Query 033649
Match_columns 114
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 07:21:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033649.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033649hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ifp_A PF3 inovirus, major coa 24.5 19 0.00066 22.0 0.4 14 93-106 30-43 (44)
2 4g6v_B CDII; tRNAse, toxin, im 19.8 25 0.00084 25.3 0.2 8 26-33 3-10 (111)
3 1dul_A Signal recognition part 15.8 49 0.0017 21.3 0.9 8 74-81 36-43 (69)
4 3c01_A Surface presentation of 13.7 68 0.0023 19.6 1.1 11 69-79 15-25 (48)
5 1mfq_C SRP54, signal recogniti 13.2 59 0.002 23.4 0.8 11 71-81 81-96 (129)
6 1hq1_A Signal recognition part 11.3 78 0.0027 21.8 0.9 13 69-81 62-77 (105)
7 3bzy_A ESCU; auto cleavage pro 10.4 99 0.0034 19.3 1.1 11 69-79 21-31 (54)
8 3qrx_B Melittin; calcium-bindi 10.2 74 0.0025 17.6 0.4 9 98-106 16-24 (26)
9 3gk6_A Integron cassette prote 9.3 1.4E+02 0.0047 20.5 1.6 25 80-104 113-137 (170)
10 2vt1_A Surface presentation of 8.6 74 0.0025 19.7 0.0 13 69-81 19-31 (52)
No 1
>1ifp_A PF3 inovirus, major coat protein assembly; virus coat protein, helical virus; 3.10A {Pseudomonas phage PF3} SCOP: h.1.4.1
Probab=24.49 E-value=19 Score=22.03 Aligned_cols=14 Identities=14% Similarity=0.726 Sum_probs=10.0
Q ss_pred hhhhccchhhhhhh
Q 033649 93 GSLRKSLKWVKNTY 106 (114)
Q Consensus 93 ~S~r~sfrWiK~k~ 106 (114)
..+--++||||..+
T Consensus 30 aavvlgirwikaqf 43 (44)
T 1ifp_A 30 AAVVLGIRWIKAQF 43 (44)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhHhhc
Confidence 34456899999765
No 2
>4g6v_B CDII; tRNAse, toxin, immunity; 2.64A {Burkholderia pseudomallei 1026A}
Probab=19.82 E-value=25 Score=25.31 Aligned_cols=8 Identities=38% Similarity=0.800 Sum_probs=6.4
Q ss_pred cccceecc
Q 033649 26 QDLRCFSA 33 (114)
Q Consensus 26 ~DlRsYSa 33 (114)
-|||||++
T Consensus 3 IDlrCY~t 10 (111)
T 4g6v_B 3 IDLFCYLS 10 (111)
T ss_dssp CEEEEEES
T ss_pred eeEEEEEe
Confidence 38999984
No 3
>1dul_A Signal recognition particle protein (fifty-four homolog); protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.80A {Escherichia coli} SCOP: a.36.1.1 PDB: 2xkv_C
Probab=15.77 E-value=49 Score=21.34 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=6.8
Q ss_pred Hhhhhhhe
Q 033649 74 QRKKRVAS 81 (114)
Q Consensus 74 kRkkRVA~ 81 (114)
.|++|||.
T Consensus 36 SR~~RIA~ 43 (69)
T 1dul_A 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 69999984
No 4
>3c01_A Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=13.67 E-value=68 Score=19.59 Aligned_cols=11 Identities=36% Similarity=0.776 Sum_probs=8.6
Q ss_pred CChHHHhhhhh
Q 033649 69 NDPELQRKKRV 79 (114)
Q Consensus 69 ~dpE~kRkkRV 79 (114)
+|||+|-++|=
T Consensus 15 GdP~iK~~~R~ 25 (48)
T 3c01_A 15 GNPEVKSKRRE 25 (48)
T ss_pred CCHHHHHHHHH
Confidence 79999977663
No 5
>1mfq_C SRP54, signal recognition particle 54KDA protein; RNA-protein complex, A-minor motif, 3-helix junction, signaling protein/RNA complex; HET: CCC; 3.10A {Homo sapiens} SCOP: a.36.1.1
Probab=13.19 E-value=59 Score=23.35 Aligned_cols=11 Identities=36% Similarity=0.459 Sum_probs=9.3
Q ss_pred hHHH-----hhhhhhe
Q 033649 71 PELQ-----RKKRVAS 81 (114)
Q Consensus 71 pE~k-----RkkRVA~ 81 (114)
|++= |++|||.
T Consensus 81 P~ii~~~~SRk~RIA~ 96 (129)
T 1mfq_C 81 AKVFSKQPGRIQRVAR 96 (129)
T ss_dssp HHHHHHCTHHHHHHHH
T ss_pred cccccCChHHHHHHHc
Confidence 8876 9999984
No 6
>1hq1_A Signal recognition particle protein; protein-RNA complex, double helix, tetraloop, internal loop, SRP, ribonucleoprotein; HET: CCC; 1.52A {Escherichia coli} SCOP: a.36.1.1 PDB: 3lqx_A* 2pxb_A 2pxd_A 2pxe_A 2pxf_A 2pxk_A 2pxl_A 2pxp_A 2pxq_A 2pxt_A 2pxu_A 2pxv_A
Probab=11.27 E-value=78 Score=21.78 Aligned_cols=13 Identities=46% Similarity=0.930 Sum_probs=9.2
Q ss_pred CChHH---Hhhhhhhe
Q 033649 69 NDPEL---QRKKRVAS 81 (114)
Q Consensus 69 ~dpE~---kRkkRVA~ 81 (114)
.+|++ .||+|||.
T Consensus 62 ~~P~ii~~SR~~RIA~ 77 (105)
T 1hq1_A 62 AKPEIIKGSRKRRIAA 77 (105)
T ss_dssp HCGGGCCHHHHHHHHH
T ss_pred hChhhcCHHHHHHHHc
Confidence 34554 69999984
No 7
>3bzy_A ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3bzl_A 3bzv_A 3bzx_A 3bzo_A 3bzz_A 3c03_B 3c00_A
Probab=10.39 E-value=99 Score=19.33 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.6
Q ss_pred CChHHHhhhhh
Q 033649 69 NDPELQRKKRV 79 (114)
Q Consensus 69 ~dpE~kRkkRV 79 (114)
+|||+|-++|=
T Consensus 21 GdP~iK~r~R~ 31 (54)
T 3bzy_A 21 GNPEIKGERRR 31 (54)
T ss_pred CCHHHHHHHHH
Confidence 79999977663
No 8
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=10.24 E-value=74 Score=17.65 Aligned_cols=9 Identities=22% Similarity=0.737 Sum_probs=6.7
Q ss_pred cchhhhhhh
Q 033649 98 SLKWVKNTY 106 (114)
Q Consensus 98 sfrWiK~k~ 106 (114)
-+.|||+|-
T Consensus 16 liSWiK~kr 24 (26)
T 3qrx_B 16 LISWIKRKR 24 (26)
T ss_pred HHHHHHHHh
Confidence 467999874
No 9
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=9.32 E-value=1.4e+02 Score=20.51 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=20.7
Q ss_pred heeeeeeeeccchhhhhccchhhhh
Q 033649 80 ASYKVYTVEGKMKGSLRKSLKWVKN 104 (114)
Q Consensus 80 A~Yk~y~vEGKvK~S~r~sfrWiK~ 104 (114)
..|-||..+|.+-..|.+.++||=.
T Consensus 113 g~YAVF~~~G~~p~~i~~~w~~I~~ 137 (170)
T 3gk6_A 113 GKYVTFSATGEMPQVVIDLWNEVWN 137 (170)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHH
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHH
Confidence 4699999999998888888887754
No 10
>2vt1_A Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=8.62 E-value=74 Score=19.70 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=0.0
Q ss_pred CChHHHhhhhhhe
Q 033649 69 NDPELQRKKRVAS 81 (114)
Q Consensus 69 ~dpE~kRkkRVA~ 81 (114)
+|||+|-++|=..
T Consensus 19 GdP~iK~~~R~~~ 31 (52)
T 2vt1_A 19 GHFETKSRRRELH 31 (52)
T ss_dssp -------------
T ss_pred CCHHHHHHHHHHH
Confidence 7999998766443
Done!