Query 033649
Match_columns 114
No_of_seqs 98 out of 100
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 07:21:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033649.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033649hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xmwa2 b.1.1.4 (A:113-178) CD 15.5 12 0.00085 23.1 -0.6 23 83-105 3-25 (66)
2 d1zs4a1 a.35.1.9 (A:4-81) Regu 11.8 26 0.0019 22.3 0.2 18 65-82 56-74 (78)
3 d1hd7a_ d.151.1.1 (A:) DNA rep 9.1 45 0.0032 20.9 0.7 28 78-109 20-48 (275)
4 d1qb2a_ a.36.1.1 (A:) SRP54M { 8.0 42 0.0031 21.2 0.2 7 75-81 77-83 (107)
5 d1dula_ a.36.1.1 (A:) Signal s 6.6 54 0.0039 19.8 0.2 8 74-81 36-43 (69)
6 d1tdha3 g.39.1.8 (A:247-290) E 5.7 66 0.0048 18.3 0.2 9 27-35 13-21 (44)
7 d2a40b1 d.151.1.1 (B:1-260) De 5.3 72 0.0052 18.3 0.2 8 78-85 2-9 (260)
8 d2ffha2 a.36.1.1 (A:319-418) S 4.9 77 0.0056 19.9 0.2 8 74-81 65-72 (100)
9 d1ppjd1 a.3.1.3 (D:1-195) Cyto 4.9 1E+02 0.0073 21.2 0.8 17 92-108 23-39 (195)
10 d1hq1a_ a.36.1.1 (A:) Signal s 4.8 87 0.0064 19.7 0.4 8 74-81 70-77 (104)
No 1
>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}
Probab=15.48 E-value=12 Score=23.12 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=19.8
Q ss_pred eeeeeeccchhhhhccchhhhhh
Q 033649 83 KVYTVEGKMKGSLRKSLKWVKNT 105 (114)
Q Consensus 83 k~y~vEGKvK~S~r~sfrWiK~k 105 (114)
.|+..|+||=-+--.++.|+|+.
T Consensus 3 ~v~e~edkV~L~Cn~sI~w~k~~ 25 (66)
T d1xmwa2 3 EVLEAEDKVILKCNSSITLLQGT 25 (66)
T ss_dssp EEEEETTEEEEECSSSCEEEEEC
T ss_pred ceEecCceEEEEccCeEEEccCc
Confidence 68899999988778899999984
No 2
>d1zs4a1 a.35.1.9 (A:4-81) Regulatory protein cII {Bacteriophage lambda [TaxId: 10710]}
Probab=11.78 E-value=26 Score=22.30 Aligned_cols=18 Identities=28% Similarity=0.649 Sum_probs=14.8
Q ss_pred ccccCChHHHhh-hhhhee
Q 033649 65 SWSFNDPELQRK-KRVASY 82 (114)
Q Consensus 65 sw~~~dpE~kRk-kRVA~Y 82 (114)
-|+..|.||-|- ||||.|
T Consensus 56 E~GV~D~ema~Lak~vA~~ 74 (78)
T d1zs4a1 56 EWGVVDDDMARLARQVAAI 74 (78)
T ss_dssp TTCCCHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHH
Confidence 688899999886 788865
No 3
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.09 E-value=45 Score=20.92 Aligned_cols=28 Identities=32% Similarity=0.795 Sum_probs=15.8
Q ss_pred hhheeeeeeeeccchhhhhc-cchhhhhhhhee
Q 033649 78 RVASYKVYTVEGKMKGSLRK-SLKWVKNTYTQI 109 (114)
Q Consensus 78 RVA~Yk~y~vEGKvK~S~r~-sfrWiK~k~s~i 109 (114)
||++|+| .| ++..+++ -+.||+..=-+|
T Consensus 20 ki~S~Nv---nG-lr~~~~~~~~~~i~~~~pDI 48 (275)
T d1hd7a_ 20 KICSWNV---DG-LRAWIKKKGLDWVKEEAPDI 48 (275)
T ss_dssp EEEEEEC---SS-HHHHHHTTHHHHHHHHCCSE
T ss_pred EEEEEEe---cc-HHhhhhccHHHHHHhCCCCE
Confidence 7888887 33 2233333 357887654333
No 4
>d1qb2a_ a.36.1.1 (A:) SRP54M {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.99 E-value=42 Score=21.25 Aligned_cols=7 Identities=57% Similarity=0.686 Sum_probs=6.2
Q ss_pred hhhhhhe
Q 033649 75 RKKRVAS 81 (114)
Q Consensus 75 RkkRVA~ 81 (114)
|++|||.
T Consensus 77 R~~RIA~ 83 (107)
T d1qb2a_ 77 RIQRVAR 83 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999984
No 5
>d1dula_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=6.56 E-value=54 Score=19.79 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=6.5
Q ss_pred Hhhhhhhe
Q 033649 74 QRKKRVAS 81 (114)
Q Consensus 74 kRkkRVA~ 81 (114)
-|++|||.
T Consensus 36 SR~~RIA~ 43 (69)
T d1dula_ 36 SRKRRIAA 43 (69)
T ss_dssp HHHHHHHH
T ss_pred hHHHHHHc
Confidence 49999984
No 6
>d1tdha3 g.39.1.8 (A:247-290) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.71 E-value=66 Score=18.31 Aligned_cols=9 Identities=33% Similarity=0.553 Sum_probs=6.4
Q ss_pred ccceecccC
Q 033649 27 DLRCFSANY 35 (114)
Q Consensus 27 DlRsYSasy 35 (114)
=||||+..-
T Consensus 13 WLqCY~~pg 21 (44)
T d1tdha3 13 WLRCYGMPG 21 (44)
T ss_dssp HCSSTTCTT
T ss_pred HHHHHcCCc
Confidence 389998554
No 7
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.28 E-value=72 Score=18.31 Aligned_cols=8 Identities=13% Similarity=0.688 Sum_probs=4.6
Q ss_pred hhheeeee
Q 033649 78 RVASYKVY 85 (114)
Q Consensus 78 RVA~Yk~y 85 (114)
||++|||-
T Consensus 2 rI~s~Ni~ 9 (260)
T d2a40b1 2 KIAAFNIR 9 (260)
T ss_dssp EEEEEEEE
T ss_pred EEEEEeCC
Confidence 55666664
No 8
>d2ffha2 a.36.1.1 (A:319-418) Signal sequence binding protein Ffh {Thermus aquaticus [TaxId: 271]}
Probab=4.93 E-value=77 Score=19.91 Aligned_cols=8 Identities=50% Similarity=0.879 Sum_probs=6.7
Q ss_pred Hhhhhhhe
Q 033649 74 QRKKRVAS 81 (114)
Q Consensus 74 kRkkRVA~ 81 (114)
.|++|||.
T Consensus 65 sR~~RIA~ 72 (100)
T d2ffha2 65 SRRKRIAK 72 (100)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 69999984
No 9
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.85 E-value=1e+02 Score=21.19 Aligned_cols=17 Identities=18% Similarity=0.339 Sum_probs=14.5
Q ss_pred hhhhhccchhhhhhhhe
Q 033649 92 KGSLRKSLKWVKNTYTQ 108 (114)
Q Consensus 92 K~S~r~sfrWiK~k~s~ 108 (114)
|.||++|++=+.+-|+.
T Consensus 23 kaSLQRGaqvf~nyC~g 39 (195)
T d1ppjd1 23 HTSIRRGFQVYKQVCSS 39 (195)
T ss_dssp HHHHHHHHHHHHHTGGG
T ss_pred HHHHHhHHHHHHHHHhh
Confidence 67999999999998874
No 10
>d1hq1a_ a.36.1.1 (A:) Signal sequence binding protein Ffh {Escherichia coli [TaxId: 562]}
Probab=4.83 E-value=87 Score=19.72 Aligned_cols=8 Identities=50% Similarity=0.920 Sum_probs=6.6
Q ss_pred Hhhhhhhe
Q 033649 74 QRKKRVAS 81 (114)
Q Consensus 74 kRkkRVA~ 81 (114)
.|++|||.
T Consensus 70 SR~~RIA~ 77 (104)
T d1hq1a_ 70 SRKRRIAA 77 (104)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHc
Confidence 68999984
Done!