Your job contains 1 sequence.
>033650
MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCT
RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033650
(114 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2180310 - symbol:AT5G27820 species:3702 "Arabi... 363 2.5e-33 1
UNIPROTKB|Q9KP00 - symbol:rplR "50S ribosomal protein L18... 140 1.1e-09 1
TIGR_CMR|VC_2580 - symbol:VC_2580 "ribosomal protein L18"... 140 1.1e-09 1
UNIPROTKB|P0C018 - symbol:rplR "50S ribosomal subunit pro... 122 8.7e-08 1
TIGR_CMR|SO_0247 - symbol:SO_0247 "ribosomal protein L18"... 117 2.9e-07 1
TIGR_CMR|CHY_2293 - symbol:CHY_2293 "ribosomal protein L1... 116 3.8e-07 1
TIGR_CMR|CPS_0617 - symbol:CPS_0617 "ribosomal protein L1... 114 6.1e-07 1
TAIR|locus:2087535 - symbol:AT3G20230 species:3702 "Arabi... 114 6.1e-07 1
TIGR_CMR|SPO_0501 - symbol:SPO_0501 "ribosomal protein L1... 112 1.0e-06 1
TAIR|locus:1005716736 - symbol:AT1G08845 species:3702 "Ar... 113 1.9e-06 1
TIGR_CMR|CBU_0254 - symbol:CBU_0254 "ribosomal protein L1... 106 4.3e-06 1
TIGR_CMR|GSU_2841 - symbol:GSU_2841 "ribosomal protein L1... 105 5.5e-06 1
TIGR_CMR|BA_0126 - symbol:BA_0126 "ribosomal protein L18"... 102 1.1e-05 1
TAIR|locus:2075934 - symbol:AT3G45020 species:3702 "Arabi... 87 0.00045 1
>TAIR|locus:2180310 [details] [associations]
symbol:AT5G27820 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] InterPro:IPR005484 Pfam:PF00861
EMBL:CP002688 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AY085957 EMBL:BT024558 IPI:IPI00535527 RefSeq:NP_198134.1
UniGene:At.30784 HSSP:P09415 ProteinModelPortal:Q8LDK5 SMR:Q8LDK5
STRING:Q8LDK5 PRIDE:Q8LDK5 EnsemblPlants:AT5G27820.1 GeneID:832844
KEGG:ath:AT5G27820 TAIR:At5g27820 HOGENOM:HOG000248743
InParanoid:Q8LDK5 OMA:KMHFTNK PhylomeDB:Q8LDK5
ProtClustDB:CLSN2687140 Genevestigator:Q8LDK5 Uniprot:Q8LDK5
Length = 114
Score = 363 (132.8 bits), Expect = 2.5e-33, P = 2.5e-33
Identities = 72/114 (63%), Positives = 86/114 (75%)
Query: 1 MVVPPPRRPLKTYQPSEPYVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCT 60
MV+PP RP + + +PYVLKMH TNK+V AQ QEKALR T+ T
Sbjct: 1 MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60
Query: 61 RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114
RDVAAASKIGK+LGERLL+KDIPAV++ +K+EQRYHGKVKA+IDS+REAGVKLL
Sbjct: 61 RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114
>UNIPROTKB|Q9KP00 [details] [associations]
symbol:rplR "50S ribosomal protein L18" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B PIR:F82057 RefSeq:NP_232208.1
ProteinModelPortal:Q9KP00 SMR:Q9KP00 PRIDE:Q9KP00 DNASU:2615597
GeneID:2615597 KEGG:vch:VC2580 PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/92 (35%), Positives = 49/92 (53%)
Query: 21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T ++V AQ EKA+R + T ++ AA +GK + ER L K
Sbjct: 26 LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
+ V+ F + +YHG+V A+ DS REAG+K
Sbjct: 86 GVTVVA-FDRSGFQYHGRVAALADSAREAGLK 116
>TIGR_CMR|VC_2580 [details] [associations]
symbol:VC_2580 "ribosomal protein L18" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:F82057
RefSeq:NP_232208.1 ProteinModelPortal:Q9KP00 SMR:Q9KP00
PRIDE:Q9KP00 DNASU:2615597 GeneID:2615597 KEGG:vch:VC2580
PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 33/92 (35%), Positives = 49/92 (53%)
Query: 21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T ++V AQ EKA+R + T ++ AA +GK + ER L K
Sbjct: 26 LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
+ V+ F + +YHG+V A+ DS REAG+K
Sbjct: 86 GVTVVA-FDRSGFQYHGRVAALADSAREAGLK 116
>UNIPROTKB|P0C018 [details] [associations]
symbol:rplR "50S ribosomal subunit protein L18"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:X01563
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 EMBL:U18997 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11
PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W
PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF
PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N
PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU
PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD
PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T
PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2
PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:A02803 RefSeq:NP_417763.1
RefSeq:YP_492128.1 ProteinModelPortal:P0C018 SMR:P0C018
DIP:DIP-47908N IntAct:P0C018 MINT:MINT-1293631 PaxDb:P0C018
PRIDE:P0C018 EnsemblBacteria:EBESCT00000004130
EnsemblBacteria:EBESCT00000018241 GeneID:12934402 GeneID:947804
KEGG:ecj:Y75_p3872 KEGG:eco:b3304 PATRIC:32122040 EchoBASE:EB0872
EcoGene:EG10879 BioCyc:EcoCyc:EG10879-MONOMER
BioCyc:ECOL316407:JW3266-MONOMER EvolutionaryTrace:P0C018
Genevestigator:P0C018 Uniprot:P0C018
Length = 117
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/92 (33%), Positives = 49/92 (53%)
Query: 21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T +++ AQ EKA+ + T + AA+ +GK + ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
I VS F + +YHG+V+A+ D+ REAG++
Sbjct: 86 GIKDVS-FDRSGFQYHGRVQALADAAREAGLQ 116
>TIGR_CMR|SO_0247 [details] [associations]
symbol:SO_0247 "ribosomal protein L18" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_715887.1 ProteinModelPortal:Q8EK53 SMR:Q8EK53
GeneID:1168130 KEGG:son:SO_0247 PATRIC:23520187 OMA:GRQTRAK
Uniprot:Q8EK53
Length = 116
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 29/92 (31%), Positives = 49/92 (53%)
Query: 21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T +++ AQ EKA++ + T +V AA +GK + ER + K
Sbjct: 26 LVVHRTPRHIYAQVINPEAQVVAAASTV-EKAVKEQLKSTGNVDAAKAVGKFVAERAIEK 84
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
+ V+ F + +YHG+V A+ D+ REAG++
Sbjct: 85 GVTNVA-FDRSGFKYHGRVAALADAAREAGLQ 115
>TIGR_CMR|CHY_2293 [details] [associations]
symbol:CHY_2293 "ribosomal protein L18" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_361102.1 ProteinModelPortal:Q3A9T2
SMR:Q3A9T2 STRING:Q3A9T2 GeneID:3727753 KEGG:chy:CHY_2293
PATRIC:21277657 BioCyc:CHYD246194:GJCN-2292-MONOMER Uniprot:Q3A9T2
Length = 122
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/98 (30%), Positives = 48/98 (48%)
Query: 15 PSEPYVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLG 74
P P L ++ + K++ AQ + LR IG ++ AA +G+L+
Sbjct: 26 PERPR-LNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRGKIGYGGNIEAAKAVGRLIA 84
Query: 75 ERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
ER K I V VF + YHG+VKA+ ++ RE G++
Sbjct: 85 ERAKAKGIEKV-VFDRGGYLYHGRVKALAEAAREGGLQ 121
>TIGR_CMR|CPS_0617 [details] [associations]
symbol:CPS_0617 "ribosomal protein L18" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 HAMAP:MF_01337_B RefSeq:YP_267367.1
ProteinModelPortal:Q488Z7 SMR:Q488Z7 STRING:Q488Z7 GeneID:3520558
KEGG:cps:CPS_0617 PATRIC:21464561 OMA:FRFHGRV
BioCyc:CPSY167879:GI48-704-MONOMER Uniprot:Q488Z7
Length = 117
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 27/87 (31%), Positives = 47/87 (54%)
Query: 26 TNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAV 85
T +++ AQ +K + + I T +VAAA+ +GK + ER + K I +
Sbjct: 31 TPRHIYAQLIAPTGSEVIASASTLDKEVSAQIEKTGNVAAATAVGKAIAERAVAKGITKI 90
Query: 86 SVFLKREQRYHGKVKAIIDSLREAGVK 112
+ F + YHG+VKA+ ++ REAG++
Sbjct: 91 A-FDRSGFLYHGRVKALAEAAREAGLQ 116
>TAIR|locus:2087535 [details] [associations]
symbol:AT3G20230 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR005484
Pfam:PF00861 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AP000383 EMBL:AY086535
EMBL:BT000934 EMBL:AK317176 IPI:IPI00522889 RefSeq:NP_566655.1
UniGene:At.26916 UniGene:At.38271 ProteinModelPortal:Q9LJX6
SMR:Q9LJX6 STRING:Q9LJX6 PaxDb:Q9LJX6 PRIDE:Q9LJX6
EnsemblPlants:AT3G20230.1 GeneID:821567 KEGG:ath:AT3G20230
TAIR:At3g20230 eggNOG:NOG290803 HOGENOM:HOG000239373
InParanoid:Q9LJX6 OMA:TDMYMRP PhylomeDB:Q9LJX6
ProtClustDB:CLSN2688588 ArrayExpress:Q9LJX6 Genevestigator:Q9LJX6
Uniprot:Q9LJX6
Length = 187
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 29/109 (26%), Positives = 52/109 (47%)
Query: 5 PPRRPLK--TYQPSEPYVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRD 62
P R+ K T P++L + + K++ A+ + +R+ I D
Sbjct: 75 PNRKSWKQRTDMYMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVD 134
Query: 63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGV 111
A IGKL+ ER + D+ AVS ++ +R GK+ +ID+++E G+
Sbjct: 135 NEACRLIGKLIAERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183
>TIGR_CMR|SPO_0501 [details] [associations]
symbol:SPO_0501 "ribosomal protein L18" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
OMA:FRFHGRV RefSeq:YP_165763.1 ProteinModelPortal:Q5LW42
GeneID:3196026 KEGG:sil:SPO0501 PATRIC:23374263 Uniprot:Q5LW42
Length = 119
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H +NK +SAQ EK L +G +V AA K+G + ER
Sbjct: 30 LSVHRSNKNISAQLIDDVRGVTLAAASTMEKDL-GVVG-KNNVEAAKKVGAAIAERAKKA 87
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ + F + +HGKVKA+ D+ RE G+K+
Sbjct: 88 GVEE-AYFDRGGFLFHGKVKALADAAREGGLKI 119
>TAIR|locus:1005716736 [details] [associations]
symbol:AT1G08845 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR005484
Pfam:PF00861 EMBL:CP002684 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 IPI:IPI00938904 RefSeq:NP_001154322.1
UniGene:At.47036 ProteinModelPortal:F4HXR7 SMR:F4HXR7 PRIDE:F4HXR7
EnsemblPlants:AT1G08845.2 GeneID:837407 KEGG:ath:AT1G08845
OMA:SFFGVED Uniprot:F4HXR7
Length = 234
Score = 113 (44.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 23/101 (22%), Positives = 48/101 (47%)
Query: 11 KTYQPSEPYVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIG 70
+T EP+ L + ++ ++VSA K +++ + D+ A IG
Sbjct: 127 RTVAYMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIG 186
Query: 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGV 111
++L ER D+ S + + ++ GK++A++ SL + G+
Sbjct: 187 RILSERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227
>TIGR_CMR|CBU_0254 [details] [associations]
symbol:CBU_0254 "ribosomal protein L18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_819298.1 ProteinModelPortal:Q83ER0 SMR:Q83ER0
GeneID:1208135 KEGG:cbu:CBU_0254 PATRIC:17929201
BioCyc:CBUR227377:GJ7S-260-MONOMER Uniprot:Q83ER0
Length = 117
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 26/92 (28%), Positives = 48/92 (52%)
Query: 21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H + ++ AQ EK +RS I ++ AA+ IGKL+ +R
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
+ V+ F + +YHG+V+A+ +++RE G++
Sbjct: 86 GVTKVA-FDRSGYKYHGRVRALAEAVREGGIE 116
>TIGR_CMR|GSU_2841 [details] [associations]
symbol:GSU_2841 "ribosomal protein L18" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_953884.2 ProteinModelPortal:Q749A3 SMR:Q749A3
GeneID:2686815 KEGG:gsu:GSU2841 PATRIC:22028529
BioCyc:GSUL243231:GH27-2807-MONOMER Uniprot:Q749A3
Length = 122
Score = 105 (42.0 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 26/91 (28%), Positives = 45/91 (49%)
Query: 21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + + +++ AQ +K ++ +V AA ++G L+ +R L K
Sbjct: 31 LNVFKSAQHIYAQIIDDTTGTTLVSASTVQKEASESLNHCGNVEAAKRVGALIAKRALEK 90
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGV 111
+I V VF + YHG++KA+ DS RE G+
Sbjct: 91 NIATV-VFDRNGFLYHGRIKALADSARENGL 120
>TIGR_CMR|BA_0126 [details] [associations]
symbol:BA_0126 "ribosomal protein L18" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256
HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060
ProtClustDB:PRK05593 HAMAP:MF_01337_B RefSeq:NP_842694.1
RefSeq:YP_016731.1 RefSeq:YP_026412.1 ProteinModelPortal:Q81VR4
SMR:Q81VR4 DNASU:1087013 EnsemblBacteria:EBBACT00000013313
EnsemblBacteria:EBBACT00000016218 EnsemblBacteria:EBBACT00000019264
GeneID:1087013 GeneID:2818212 GeneID:2851571 KEGG:ban:BA_0126
KEGG:bar:GBAA_0126 KEGG:bat:BAS0126
BioCyc:BANT260799:GJAJ-137-MONOMER
BioCyc:BANT261594:GJ7F-139-MONOMER Uniprot:Q81VR4
Length = 120
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 21 LKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + +N+++ AQ +K L + T ++ AA+K+G+ + +R + K
Sbjct: 31 LNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDL--ALNGTSNIEAATKVGESVAKRAVEK 88
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112
+ V VF + YHG+VKA+ ++ REAG++
Sbjct: 89 GVKEV-VFDRGGYLYHGRVKALAEAAREAGLQ 119
>TAIR|locus:2075934 [details] [associations]
symbol:AT3G45020 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005484 Pfam:PF00861 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AL353992 UniGene:At.1756 UniGene:At.49667 HOGENOM:HOG000248743
EMBL:BT014764 EMBL:BT014850 EMBL:AK221615 IPI:IPI00532465
PIR:T48978 RefSeq:NP_190088.1 ProteinModelPortal:Q9LXH3 SMR:Q9LXH3
EnsemblPlants:AT3G45020.1 GeneID:823637 KEGG:ath:AT3G45020
TAIR:At3g45020 eggNOG:NOG323026 InParanoid:Q9LXH3 OMA:GRSCNAK
PhylomeDB:Q9LXH3 ProtClustDB:CLSN2684628 Genevestigator:Q9LXH3
Uniprot:Q9LXH3
Length = 133
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 28/108 (25%), Positives = 53/108 (49%)
Query: 19 YVLKMHLTNKYVSAQXXXXXXXXXXXXXXXQEKALRSTIGCTR--DVAAASKIGKLLGER 76
YVL++ ++ KY++A E +++++ C R + AA+ +G++L R
Sbjct: 7 YVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVLAMR 66
Query: 77 LLLKDIP-----AVSVFLKREQRYHG-----KVKAIIDSLREAGVKLL 114
L ++ + + +K+E G KV A+I+SLR GV L+
Sbjct: 67 LKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.135 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 114 99 0.00091 102 3 11 22 0.38 30
29 0.46 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 14
No. of states in DFA: 505 (54 KB)
Total size of DFA: 92 KB (2067 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.15u 0.11s 9.26t Elapsed: 00:00:00
Total cpu time: 9.15u 0.11s 9.26t Elapsed: 00:00:00
Start: Thu May 9 22:21:50 2013 End: Thu May 9 22:21:50 2013