BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033650
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=rplR PE=3 SV=1
Length = 120
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 7 RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAA 66
RR ++ P L +H T+K++ AQ++ +ASS EK LRS++ DV AA
Sbjct: 16 RRAIRAAANGRPR-LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAA 74
Query: 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
IGKL+ ER K + AV VF + YHG+VKA+ + RE G++
Sbjct: 75 KAIGKLVAERATAKGVTAV-VFDRGAYIYHGRVKALAEGAREGGLQF 120
>sp|B6EPU1|RL18_ALISL 50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain
LFI1238) GN=rplR PE=3 SV=1
Length = 117
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T ++ AQV+ + V ++AS+ EKA+R +G T + AAA IGKL+ ER + K
Sbjct: 26 LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I V+ F + +YHG+V A+ DS REAG+K
Sbjct: 86 GITNVA-FDRSGFQYHGRVAALADSAREAGLKF 117
>sp|A7IPQ4|RL18_XANP2 50S ribosomal protein L18 OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=rplR PE=3 SV=1
Length = 120
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 61/107 (57%), Gaps = 2/107 (1%)
Query: 7 RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAA 66
RR ++ P L +H T++++ AQV+ ++ASS EK LR+++ D AA
Sbjct: 16 RRAIRVAANGRPR-LSVHRTSQHIYAQVIDDANGETLAAASSLEKDLRTSLKTGADTDAA 74
Query: 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
IGKL+ ER L K + AV VF + +HG+VKA+ + RE G++
Sbjct: 75 KTIGKLVAERALAKGVTAV-VFDRGAYIFHGRVKALAEGAREGGLQF 120
>sp|Q89A81|RL18_BUCBP 50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rplR PE=3 SV=1
Length = 121
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 13 YQPSEPYVLKM--HLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIG 70
+Q + +++++ H T+K++ AQ++ S A V +SAS+ EK + + + T ++ A+ IG
Sbjct: 20 FQIKKLHLIRLVVHRTSKHIYAQIIDSKNALVLTSASTVEKEILNLVKYTGNIHASICIG 79
Query: 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
K + ER L+K I VS F + +YHG+VKA+ D+ RE+G+K
Sbjct: 80 KKIAERALMKGIINVS-FDRSGFQYHGRVKALADAARESGLKF 121
>sp|Q5E898|RL18_VIBF1 50S ribosomal protein L18 OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=rplR PE=3 SV=1
Length = 117
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T ++ AQV+ + V ++AS+ EKA+R +G T + AAA IGKL+ ER + K
Sbjct: 26 LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGSTSNKAAAEAIGKLIAERAIEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I V+ F + +YHG+V A+ +S REAG+K
Sbjct: 86 GITNVA-FDRSGFQYHGRVAALAESAREAGLKF 117
>sp|B5FG25|RL18_VIBFM 50S ribosomal protein L18 OS=Vibrio fischeri (strain MJ11) GN=rplR
PE=3 SV=1
Length = 117
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T ++ AQV+ + V ++AS+ EKA+R +G T + AAA IGKL+ ER + K
Sbjct: 26 LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGNTSNKAAAEAIGKLIAERAIEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I V+ F + +YHG+V A+ +S REAG+K
Sbjct: 86 GITNVA-FDRSGFQYHGRVAALAESAREAGLKF 117
>sp|C0QW11|RL18_BRAHW 50S ribosomal protein L18 OS=Brachyspira hyodysenteriae (strain
ATCC 49526 / WA1) GN=rplR PE=3 SV=1
Length = 118
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 10 LKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKI 69
+K SE L +H + KYVSAQ++ +SASSQEK L+S ++V A +I
Sbjct: 20 IKIEGSSERPRLTVHKSLKYVSAQIIDDSKGITLASASSQEKDLKS----GKNVDIAKEI 75
Query: 70 GKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
GK+L R K+I V VF + YHGK+K++ D REAG+K
Sbjct: 76 GKVLATRAKEKNISEV-VFDRNGYIYHGKIKSLADGAREAGLKF 118
>sp|P52863|RL18_VIBPR 50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1
Length = 117
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T ++V AQV+ S + V ++AS+ EKA+R + T +V AA +GK + ER L K
Sbjct: 26 LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ V+ F + +YHG+V A+ +S REAG+K
Sbjct: 86 GVETVA-FDRSGFQYHGRVAALAESAREAGLKF 117
>sp|A7HM36|RL18_FERNB 50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1
Length = 122
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 15 PSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLG 74
P P L + + K++ AQ++ +AS+ EKA++ + T ++ AA ++GKL+
Sbjct: 26 PERPR-LAVFRSEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTWNITAAKEVGKLIA 84
Query: 75 ERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
ER L K I V VF + +YHG+VKA+ D+ REAG+K
Sbjct: 85 ERALAKGIKEV-VFDRGGFKYHGRVKALADAAREAGLKF 122
>sp|Q3IJK1|RL18_PSEHT 50S ribosomal protein L18 OS=Pseudoalteromonas haloplanktis (strain
TAC 125) GN=rplR PE=3 SV=1
Length = 116
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T +++ AQVV + TV ++AS+ EKA+ T+ T +VAAA +GK + ER K
Sbjct: 26 LVIHRTPRHIYAQVV-TAEGTVLAAASTVEKAICETVKGTGNVAAAQAVGKAVAERAADK 84
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I ++ F + +YHG+VKA+ D+ REAG++
Sbjct: 85 GIEKIA-FDRSGFKYHGRVKALADAAREAGLQF 116
>sp|B6IRS2|RL18_RHOCS 50S ribosomal protein L18 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplR PE=3 SV=1
Length = 120
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 7 RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAA 66
R +K Y P L + ++K++ AQ++ ++ASS +K LR + D+ AA
Sbjct: 16 RARIKKYGSGRPR-LSVFRSSKHIYAQIIDDTAGHTLAAASSLDKDLREGLKTGADIDAA 74
Query: 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+GKL+ ER K + AV VF + +HG+VKA+ D+ REAG++
Sbjct: 75 KAVGKLIAERATAKGVTAV-VFDRGAYLFHGRVKALADAAREAGLQF 120
>sp|A4SUX7|RL18_POLSQ 50S ribosomal protein L18 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rplR PE=3 SV=1
Length = 117
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 26 TNKYVSAQVVHSPTAT-VASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPA 84
+N ++SAQV +SP T V ++AS+ EK LR I + AA++IGKL+ ER + +
Sbjct: 31 SNTHISAQV-YSPCGTKVVAAASTMEKDLRQAIKNGGNAQAAAQIGKLVAERAVKAGVVD 89
Query: 85 VSVFLKREQRYHGKVKAIIDSLREAGVKL 113
V+ F + RYHG++KA+ ++ REAG+K
Sbjct: 90 VA-FDRSGHRYHGRIKALAEAAREAGLKF 117
>sp|A5ELL1|RL18_BRASB 50S ribosomal protein L18 OS=Bradyrhizobium sp. (strain BTAi1 /
ATCC BAA-1182) GN=rplR PE=3 SV=1
Length = 120
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + ++K++ AQV+ +SASS EK +RS+ D+ AA +GKLL ER +
Sbjct: 29 LSVFRSSKHIYAQVIDDQKGETLASASSMEKEMRSSGNTGADIDAAKAVGKLLAERAVKA 88
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I V VF + YHG+VKA+ D+ RE+G+
Sbjct: 89 GIKEV-VFDRGGYLYHGRVKALADAARESGLSF 120
>sp|Q1MIC5|RL18_RHIL3 50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. viciae
(strain 3841) GN=rplR PE=3 SV=1
Length = 120
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 7 RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAA 66
RR LK+ P L +H ++K + AQV+ +SAS+ EK LR ++ D AAA
Sbjct: 16 RRHLKSVANGRPR-LSVHRSSKNIYAQVIDDVAGKTLASASTLEKDLRGSLKTGADTAAA 74
Query: 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ +GKLL ER + V VF + YHG++KA+ ++ RE G+
Sbjct: 75 TVVGKLLAERASKAGVTEV-VFDRGAFIYHGRIKALAEAAREGGLTF 120
>sp|A4YSK8|RL18_BRASO 50S ribosomal protein L18 OS=Bradyrhizobium sp. (strain ORS278)
GN=rplR PE=3 SV=1
Length = 120
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + ++K++ AQV+ +SASS EK +RS D+ AA +GKLL ER +
Sbjct: 29 LSVFRSSKHIYAQVIDDQKGETIASASSMEKEMRSAGNTGADIDAAKAVGKLLAERAVKA 88
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I V VF + YHG+VKA+ D+ RE+G+
Sbjct: 89 GIKEV-VFDRGGYLYHGRVKALADAARESGLSF 120
>sp|B8D833|RL18_BUCAT 50S ribosomal protein L18 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=rplR PE=3 SV=1
Length = 122
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 2 VVPPPRRPLKT---YQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIG 58
++ RR +KT + L +H T++++ AQ++ S A V AS+ E+ + ++
Sbjct: 9 IISRIRRSMKTRCKIKKLGAIRLVVHRTSRHMYAQIISSKEAKVLVFASTLERKINCSLK 68
Query: 59 CTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
T + AA+KIGK++ ER L K I VS F + +YHG+V+ + +S RE G+K
Sbjct: 69 YTGNKEAAAKIGKIIAERALSKGISHVS-FDRSGFKYHGRVQVLAESAREVGLKF 122
>sp|P57575|RL18_BUCAI 50S ribosomal protein L18 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rplR PE=3 SV=1
Length = 122
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 2 VVPPPRRPLKT---YQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIG 58
++ RR +KT + L +H T++++ AQ++ S A V AS+ E+ + ++
Sbjct: 9 IISRIRRSMKTRCKIKKLGAIRLVVHRTSRHMYAQIISSKEAKVLVFASTLERKINCSLK 68
Query: 59 CTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
T + AA+KIGK++ ER L K I VS F + +YHG+V+ + +S RE G+K
Sbjct: 69 YTGNKEAAAKIGKIIAERALSKGISHVS-FDRSGFKYHGRVQVLAESAREVGLKF 122
>sp|B8D9T1|RL18_BUCA5 50S ribosomal protein L18 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=rplR PE=3 SV=1
Length = 122
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 2 VVPPPRRPLKT---YQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIG 58
++ RR +KT + L +H T++++ AQ++ S A V AS+ E+ + ++
Sbjct: 9 IISRIRRSMKTRCKIKKLGAIRLVVHRTSRHMYAQIISSKEAKVLVFASTLERKINCSLK 68
Query: 59 CTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
T + AA+KIGK++ ER L K I VS F + +YHG+V+ + +S RE G+K
Sbjct: 69 YTGNKEAAAKIGKIIAERALSKGISHVS-FDRSGFKYHGRVQVLAESAREVGLKF 122
>sp|A1WVA6|RL18_HALHL 50S ribosomal protein L18 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rplR PE=3 SV=1
Length = 117
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/95 (37%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Query: 19 YVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLL 78
Y L +H T +++ AQV AT ++AS+ E ALR T +V+AA ++G+L+ ER
Sbjct: 24 YRLSVHRTPRHIYAQVQQPDGATTLAAASTVEPALRQRSEGTGNVSAAQEVGRLIAERAK 83
Query: 79 LKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I V+ F + +YHG+V+A+ ++ REAG+K
Sbjct: 84 AAGIEQVA-FDRGGYQYHGRVQALAEAAREAGLKF 117
>sp|B0C1E8|RL18_ACAM1 50S ribosomal protein L18 OS=Acaryochloris marina (strain MBIC
11017) GN=rplR PE=3 SV=1
Length = 118
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + +N+++ AQV+ ++AS+ E L+S+ G T D A++ +GKL+ ER + K
Sbjct: 29 LAVFRSNQHIYAQVIDDAQQHTLAAASTVESDLKSSSGATCD--ASTAVGKLVAERAIEK 86
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I AV VF + YHG+VKA+ D+ REAG++
Sbjct: 87 GIKAV-VFDRGGNLYHGRVKALADAAREAGLEF 118
>sp|Q4ZMR0|RL18_PSEU2 50S ribosomal protein L18 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=rplR PE=3 SV=1
Length = 116
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H +++++ AQV+ + + V +SAS+ +K LR G T ++ AA+K+GKL+ ER
Sbjct: 27 LCVHRSSQHIYAQVISADGSKVLASASTLDKELRD--GATGNIDAATKVGKLVAERAKAA 84
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ V+ F + +YHG+VKA+ D+ RE G++
Sbjct: 85 GVSQVA-FDRSGFKYHGRVKALADAAREGGLEF 116
>sp|Q889V5|RL18_PSESM 50S ribosomal protein L18 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=rplR PE=3 SV=1
Length = 116
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H +++++ AQV+ + + V +SAS+ +K LR G T ++ AA+K+GKL+ ER
Sbjct: 27 LCVHRSSQHIYAQVISADGSKVLASASTLDKELRD--GATGNIDAATKVGKLVAERAKAA 84
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ V+ F + +YHG+VKA+ D+ RE G++
Sbjct: 85 GVSQVA-FDRSGFKYHGRVKALADAAREGGLEF 116
>sp|Q48D52|RL18_PSE14 50S ribosomal protein L18 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=rplR PE=3 SV=1
Length = 116
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 3/93 (3%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H +++++ AQV+ + + V +SAS+ +K LR G T ++ AA+K+GKL+ ER
Sbjct: 27 LCVHRSSQHIYAQVISADGSKVLASASTLDKELRD--GATGNIDAATKVGKLVAERAKAA 84
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ V+ F + +YHG+VKA+ D+ RE G++
Sbjct: 85 GVSQVA-FDRSGFKYHGRVKALADAAREGGLEF 116
>sp|B1LBM4|RL18_THESQ 50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR
PE=3 SV=1
Length = 122
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAV 85
+NK++ AQ++ SAS+ + LR + T +V AA ++G L+G+R L K I V
Sbjct: 36 SNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTWNVEAAKEVGLLIGKRALEKGIKKV 95
Query: 86 SVFLKREQRYHGKVKAIIDSLREAGVKL 113
VF + +YHG+VKA+ D REAG++
Sbjct: 96 -VFDRGGYKYHGRVKALADGAREAGLEF 122
>sp|A5IM99|RL18_THEP1 50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1
Length = 122
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAV 85
+NK++ AQ++ SAS+ + LR + T +V AA ++G L+G+R L K I V
Sbjct: 36 SNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTWNVEAAKEVGLLIGKRALEKGIKKV 95
Query: 86 SVFLKREQRYHGKVKAIIDSLREAGVKL 113
VF + +YHG+VKA+ D REAG++
Sbjct: 96 -VFDRGGYKYHGRVKALADGAREAGLEF 122
>sp|Q9ZAE3|RL18_THEMA 50S ribosomal protein L18 OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=rplR PE=3 SV=2
Length = 122
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAV 85
+NK++ AQ++ SAS+ + LR + T +V AA ++G L+G+R L K I V
Sbjct: 36 SNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTWNVEAAKEVGLLIGKRALEKGIKKV 95
Query: 86 SVFLKREQRYHGKVKAIIDSLREAGVKL 113
VF + +YHG+VKA+ D REAG++
Sbjct: 96 -VFDRGGYKYHGRVKALADGAREAGLEF 122
>sp|B5ZYV1|RL18_RHILW 50S ribosomal protein L18 OS=Rhizobium leguminosarum bv. trifolii
(strain WSM2304) GN=rplR PE=3 SV=1
Length = 120
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 59/107 (55%), Gaps = 2/107 (1%)
Query: 7 RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAA 66
RR LK+ P L +H ++K + AQV+ ++AS+ +K LR ++ D AAA
Sbjct: 16 RRHLKSVANGRPR-LSVHRSSKNIYAQVIDDVAGKTLAAASTLDKDLRGSLKTGADTAAA 74
Query: 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ +GKL+ ER + V VF + YHG++KA+ D+ RE G+
Sbjct: 75 ALVGKLVAERASKAGVTDV-VFDRGAFIYHGRIKALADAAREGGLTF 120
>sp|B1XSR7|RL18_POLNS 50S ribosomal protein L18 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rplR PE=3 SV=1
Length = 117
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 26 TNKYVSAQVVHSPTAT-VASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPA 84
+N ++SAQV +SP T V ++AS+ EK LR I AA +IGKL+ ER + +
Sbjct: 31 SNSHISAQV-YSPCGTKVVAAASTMEKDLRQAIKNGSYAEAAKQIGKLVAERAVKAGVVD 89
Query: 85 VSVFLKREQRYHGKVKAIIDSLREAGVKL 113
V+ F + RYHG++KA+ ++ REAG+K
Sbjct: 90 VA-FDRSGHRYHGRIKALAEAAREAGLKF 117
>sp|B0UX30|RL18_HAES2 50S ribosomal protein L18 OS=Haemophilus somnus (strain 2336)
GN=rplR PE=3 SV=1
Length = 117
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T++++ AQV+ + V ++AS+ EKA+ + T + AA+ +GK++ ER L K
Sbjct: 26 LVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNKDAAAVVGKIVAERALEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I +V+ F + +YHG+V+++ D+ REAG++
Sbjct: 86 GIKSVA-FDRSGFKYHGRVQSLADAAREAGLQF 117
>sp|Q0I146|RL18_HAES1 50S ribosomal protein L18 OS=Haemophilus somnus (strain 129Pt)
GN=rplR PE=3 SV=1
Length = 117
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T++++ AQV+ + V ++AS+ EKA+ + T + AA+ +GK++ ER L K
Sbjct: 26 LVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNKDAAAVVGKIVAERALEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I +V+ F + +YHG+V+++ D+ REAG++
Sbjct: 86 GIKSVA-FDRSGFKYHGRVQSLADAAREAGLQF 117
>sp|P46899|RL18_BACSU 50S ribosomal protein L18 OS=Bacillus subtilis (strain 168) GN=rplR
PE=1 SV=1
Length = 120
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + +NK++ AQ++ +SAS+ +K L + T D +AA+K+G+L+ +R K
Sbjct: 31 LNVFRSNKHIYAQIIDDVNGVTLASASTLDKDL--NVESTGDTSAATKVGELVAKRAAEK 88
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I V VF + YHG+VKA+ D+ REAG+K
Sbjct: 89 GISDV-VFDRGGYLYHGRVKALADAAREAGLKF 120
>sp|Q211G4|RL18_RHOPB 50S ribosomal protein L18 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplR PE=3 SV=1
Length = 120
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + ++K++ AQV+ +SASS EKA+R T ++ AA +GKLL ER +
Sbjct: 29 LSVFRSSKHIYAQVIDDLKGETLASASSLEKAMRDTGNTGANIDAAKAVGKLLAERAVKN 88
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ V VF + YHG++KA+ D+ RE+G+
Sbjct: 89 GVTEV-VFDRGGYLYHGRIKALADAARESGLSF 120
>sp|B0BSU7|RL18_ACTPJ 50S ribosomal protein L18 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=rplR PE=3 SV=1
Length = 117
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T +++ AQV+ + V ++AS+ EK ++ + T + AA+ +GKL+ ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLAAASTVEKVIKEQVKYTGNKDAAAVVGKLVAERALAK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I AV+ F + +YHG+V+ + D+ REAG++
Sbjct: 86 GIQAVA-FDRSGFKYHGRVQVLADAAREAGLQF 117
>sp|B3GZ27|RL18_ACTP7 50S ribosomal protein L18 OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=rplR PE=3 SV=1
Length = 117
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T +++ AQV+ + V ++AS+ EK ++ + T + AA+ +GKL+ ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLAAASTVEKVIKEQVKYTGNKDAAAVVGKLVAERALAK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I AV+ F + +YHG+V+ + D+ REAG++
Sbjct: 86 GIQAVA-FDRSGFKYHGRVQVLADAAREAGLQF 117
>sp|A3N373|RL18_ACTP2 50S ribosomal protein L18 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=rplR PE=3 SV=1
Length = 117
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T +++ AQV+ + V ++AS+ EK ++ + T + AA+ +GKL+ ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLAAASTVEKVIKEQVKYTGNKDAAAVVGKLVAERALAK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I AV+ F + +YHG+V+ + D+ REAG++
Sbjct: 86 GIQAVA-FDRSGFKYHGRVQVLADAAREAGLQF 117
>sp|B5YDV9|RL18_DICT6 50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1
Length = 122
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 65/123 (52%), Gaps = 11/123 (8%)
Query: 1 MVVPPPRRPL----------KTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQE 50
M++ R+ L K SE L ++ + +Y+ AQ++ SASS E
Sbjct: 1 MIIKRSRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLE 60
Query: 51 KALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110
K +RS + T+++ AA +G+++ +R L K I V VF + YHGKVKA+ DS R AG
Sbjct: 61 KEIRSQLKSTKNIEAAKLVGEVIAKRALEKGIKKV-VFDRGGFLYHGKVKALADSARAAG 119
Query: 111 VKL 113
++
Sbjct: 120 LEF 122
>sp|B8E1E9|RL18_DICTD 50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rplR PE=3 SV=1
Length = 122
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 59/102 (57%), Gaps = 2/102 (1%)
Query: 12 TYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGK 71
T P P L ++ + +Y+ AQ++ +ASS EK LRS + T+++ AA +G+
Sbjct: 23 TGTPERPR-LAVYKSLRYIYAQIIDDTKGHTLVAASSLEKELRSQLKSTKNIEAAKLVGE 81
Query: 72 LLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
++ +R L K I V VF + YHGKVKA+ DS R AG++
Sbjct: 82 VIAKRALEKGIKRV-VFDRGGFLYHGKVKALADSARAAGLEF 122
>sp|B9K8A2|RL18_THENN 50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1
Length = 122
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAV 85
+NK++ AQ++ SAS+ + LR + T ++ AA ++G L+G+R + K I V
Sbjct: 36 SNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTWNIEAAKEVGLLIGKRAIEKGIKKV 95
Query: 86 SVFLKREQRYHGKVKAIIDSLREAGVKL 113
VF + +YHG+VKA+ D REAG++
Sbjct: 96 -VFDRGGYKYHGRVKALADGAREAGLEF 122
>sp|A4XZ74|RL18_PSEMY 50S ribosomal protein L18 OS=Pseudomonas mendocina (strain ymp)
GN=rplR PE=3 SV=1
Length = 116
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 17 EPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGER 76
E L ++ +++++ AQV+ + + V +SAS+ +KALR G T +V AA K+G+L+ ER
Sbjct: 23 EAVRLCVYRSSQHIYAQVISADGSKVLASASTLDKALRD--GATGNVDAAKKVGQLVAER 80
Query: 77 LLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ V+ F + +YHG+VKA+ D+ RE G++
Sbjct: 81 AKAAGVTQVA-FDRSGFKYHGRVKALADAAREGGLEF 116
>sp|B2UEK3|RL18_RALPJ 50S ribosomal protein L18 OS=Ralstonia pickettii (strain 12J)
GN=rplR PE=3 SV=1
Length = 118
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTI-GCTRDVAAASKIGKLLGERLLL 79
L +H TN ++ AQV V +SAS+ E +R + G + AAA+ +GK + E+
Sbjct: 26 LAVHRTNLHIYAQVFSEDGTKVLASASTAEAEVRKELNGNGGNTAAATLVGKRIAEKAKA 85
Query: 80 KDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I AV+ F + RYHG+VKA+ D+ REAG+K
Sbjct: 86 AGIEAVA-FDRSGFRYHGRVKALADAAREAGLKF 118
>sp|Q8XV28|RL18_RALSO 50S ribosomal protein L18 OS=Ralstonia solanacearum (strain
GMI1000) GN=rplR PE=3 SV=1
Length = 118
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 2/94 (2%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTI-GCTRDVAAASKIGKLLGERLLL 79
L +H TN ++ AQV V +SAS+ E +R + G + AAA+ +GK + E+
Sbjct: 26 LAVHRTNLHIYAQVFSEDGTKVLASASTAEAEVRKELNGNGGNTAAATLVGKRIAEKAKA 85
Query: 80 KDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I AV+ F + RYHG+VKA+ D+ REAG+K
Sbjct: 86 AGIEAVA-FDRSGFRYHGRVKALADAAREAGLKF 118
>sp|A7Z0Q4|RL18_BACA2 50S ribosomal protein L18 OS=Bacillus amyloliquefaciens (strain
FZB42) GN=rplR PE=3 SV=1
Length = 120
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + +NK++ AQ++ +SAS+ +K L + T D AAA+K+G+L+ +R K
Sbjct: 31 LNVFRSNKHIYAQIIDDVNGVTLASASTLDKDL--NVESTGDSAAAAKVGELVAKRASEK 88
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ V VF + YHG+VKA+ D+ REAG+K
Sbjct: 89 GVSDV-VFDRGGYLYHGRVKALADAAREAGLKF 120
>sp|C6DG58|RL18_PECCP 50S ribosomal protein L18 OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=rplR PE=3 SV=1
Length = 117
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T +++ AQV+ + V +AS+ EKA+ + T + AAS IGK + ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKSTGNKDAASAIGKAIAERALEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I VS F + +YHG+V+A+ D+ REAG++
Sbjct: 86 GIKDVS-FDRSGFQYHGRVQALADAAREAGLQF 117
>sp|A1TYL3|RL18_MARAV 50S ribosomal protein L18 OS=Marinobacter aquaeolei (strain ATCC
700491 / DSM 11845 / VT8) GN=rplR PE=3 SV=1
Length = 115
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 3/93 (3%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T +++ AQV + + V ++AS+ +K LR G T +V AA K+G+L+ ER
Sbjct: 26 LCVHRTPRHMYAQVTTADGSKVLATASTLDKELRQ--GATGNVDAAKKVGQLIAERAKAA 83
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I V+ F + RYHG+V+A+ D+ REAG++
Sbjct: 84 GIEKVA-FDRSGYRYHGRVQALADAAREAGLQF 115
>sp|C4KZN0|RL18_EXISA 50S ribosomal protein L18 OS=Exiguobacterium sp. (strain ATCC
BAA-1283 / AT1b) GN=rplR PE=3 SV=1
Length = 120
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + ++K++ Q++ T SASS++KAL T G +V AA +GKL ER L K
Sbjct: 31 LNVFRSSKHIYVQLIDDAAQTTLVSASSKDKALDLTNGG--NVEAAKAVGKLAAERALEK 88
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I V VF + YHG+VKA+ ++ REAG+K
Sbjct: 89 GIDTV-VFDRGGYLYHGRVKAVAEAAREAGLKF 120
>sp|B8F6Q5|RL18_HAEPS 50S ribosomal protein L18 OS=Haemophilus parasuis serovar 5 (strain
SH0165) GN=rplR PE=3 SV=1
Length = 117
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L +H T +++ AQV+ + V ++AS+ EK ++ + T + AA+ +GK++ ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERALEK 85
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
I AV+ F + +YHG+V+++ D+ REAG++
Sbjct: 86 GIKAVA-FDRSGFKYHGRVQSLADAAREAGLQF 117
>sp|B9JDU4|RL18_AGRRK 50S ribosomal protein L18 OS=Agrobacterium radiobacter (strain K84
/ ATCC BAA-868) GN=rplR PE=3 SV=1
Length = 120
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 7 RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAA 66
RR LK+ P L +H ++K + QV+ +SAS+ +K LR ++ D AAA
Sbjct: 16 RRQLKSVANGRPR-LSVHRSSKNIYVQVIDDAAGKTLASASTLDKDLRGSLKTGADTAAA 74
Query: 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ +GKL+ ER + V VF + YHG++KA+ ++ RE G+
Sbjct: 75 ALVGKLVAERATKAGVKEV-VFDRGAFIYHGRIKALAEAAREGGLSF 120
>sp|Q89JA0|RL18_BRAJA 50S ribosomal protein L18 OS=Bradyrhizobium japonicum (strain USDA
110) GN=rplR PE=3 SV=1
Length = 120
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + ++K++ AQV+ +SASS EK++R D+ AA +GKLL ER K
Sbjct: 29 LSVFRSSKHIYAQVIDDLKGETLASASSLEKSMRDGGKTGADIDAAKAVGKLLAERAAEK 88
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ V VF + YHG+VKA+ D+ RE+G+
Sbjct: 89 GVKEV-VFDRGSYLYHGRVKALADAARESGLSF 120
>sp|Q3SSV0|RL18_NITWN 50S ribosomal protein L18 OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=rplR PE=3 SV=1
Length = 120
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 1/93 (1%)
Query: 21 LKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK 80
L + ++K++ AQV+ +SASS EKA+R D+ AA +GKL+ ER +
Sbjct: 29 LSVFRSSKHIYAQVIDDLKGETLASASSLEKAMRDAGNTGADIDAAKAVGKLVAERAVKN 88
Query: 81 DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+ V VF + YHG+VKA+ D+ RE+G+
Sbjct: 89 GVKEV-VFDRGGYLYHGRVKALADAARESGLSF 120
>sp|Q11HR8|RL18_MESSB 50S ribosomal protein L18 OS=Mesorhizobium sp. (strain BNC1)
GN=rplR PE=3 SV=1
Length = 119
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 2/107 (1%)
Query: 7 RRPLKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAA 66
RR LK P L ++ ++K++ AQV+ ++ASS +K LR + DV AA
Sbjct: 15 RRKLKAVATERPR-LSVYRSSKHIYAQVIDDVKGHTLAAASSLDKDLREKLKTGADVDAA 73
Query: 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113
+GKL+ ER I V VF + YHG+VKA+ D+ RE G++
Sbjct: 74 GVVGKLIAERAKKAGIDKV-VFDRGPYIYHGRVKALADAAREGGLEF 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,086,957
Number of Sequences: 539616
Number of extensions: 1199490
Number of successful extensions: 5642
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 489
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 4570
Number of HSP's gapped (non-prelim): 773
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)