Query 033650
Match_columns 114
No_of_seqs 120 out of 1080
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 07:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8s_O 50S ribosomal protein L 100.0 2.4E-42 8.1E-47 241.5 11.9 97 16-113 20-116 (116)
2 3bbo_Q Ribosomal protein L18; 100.0 5.1E-42 1.8E-46 250.9 6.4 101 12-113 59-161 (161)
3 1ovy_A 50S ribosomal protein L 100.0 6.6E-41 2.3E-45 235.4 6.7 99 12-113 22-120 (120)
4 3v2d_S 50S ribosomal protein L 100.0 1E-40 3.5E-45 231.9 6.8 94 13-113 19-112 (112)
5 2zjr_L 50S ribosomal protein L 100.0 2.9E-39 1E-43 225.2 1.8 94 13-113 18-114 (114)
6 1vq8_N 50S ribosomal protein L 100.0 2.8E-35 9.6E-40 219.8 12.8 98 14-113 28-130 (187)
7 3j21_O 50S ribosomal protein L 100.0 2.3E-34 7.9E-39 217.1 8.3 98 15-113 29-131 (203)
8 2zkr_n 60S ribosomal protein L 100.0 3.8E-29 1.3E-33 196.6 13.7 97 16-113 46-173 (297)
9 3u5e_D 60S ribosomal protein L 99.9 4E-27 1.4E-31 185.2 11.6 97 16-113 46-173 (297)
10 4a17_M RPL5, 60S ribosomal pro 99.9 4.3E-27 1.5E-31 185.2 11.5 97 16-113 46-173 (301)
11 3iz5_Q 60S ribosomal protein L 99.9 1.4E-23 4.7E-28 165.4 8.0 94 16-113 50-173 (304)
12 2vqe_K 30S ribosomal protein S 98.1 3E-05 1E-09 54.4 9.9 92 16-113 14-105 (129)
13 2xzm_K RPS14E; ribosome, trans 98.0 0.0001 3.5E-09 53.1 10.3 98 13-113 23-126 (151)
14 3r8n_K 30S ribosomal protein S 97.8 7.1E-05 2.4E-09 51.7 7.7 88 20-113 8-95 (117)
15 3j20_M 30S ribosomal protein S 97.8 0.00024 8.1E-09 50.4 10.4 94 17-113 13-112 (137)
16 3bbn_K Ribosomal protein S11; 97.8 4.8E-05 1.6E-09 54.2 6.0 91 17-113 28-118 (140)
17 3u5c_O RP59A, 40S ribosomal pr 97.4 0.00036 1.2E-08 49.4 6.1 101 10-113 6-112 (137)
18 4fnq_A Alpha-galactosidase AGA 80.7 1.8 6.2E-05 37.2 4.6 40 73-113 351-408 (729)
19 3b09_A Peptidyl-prolyl CIS-tra 80.2 2.3 7.7E-05 27.3 4.0 34 63-108 30-63 (88)
20 2h6r_A Triosephosphate isomera 74.2 1.1 3.7E-05 32.8 1.2 46 69-114 70-115 (219)
21 3gv0_A Transcriptional regulat 74.2 9.8 0.00034 27.2 6.5 46 67-113 112-160 (288)
22 1byk_A Protein (trehalose oper 73.3 10 0.00034 26.5 6.2 44 68-112 101-148 (255)
23 3gyb_A Transcriptional regulat 72.2 8.3 0.00028 27.3 5.6 46 67-113 103-149 (280)
24 3tev_A Glycosyl hyrolase, fami 72.1 2.3 7.8E-05 33.7 2.7 54 58-111 102-173 (351)
25 3d8u_A PURR transcriptional re 71.5 9.9 0.00034 26.7 5.9 46 67-113 105-153 (275)
26 2h0a_A TTHA0807, transcription 71.1 11 0.00039 26.5 6.1 45 68-113 100-152 (276)
27 3egc_A Putative ribose operon 70.8 10 0.00035 27.1 5.8 46 67-113 110-158 (291)
28 3qi7_A Putative transcriptiona 70.5 6.1 0.00021 31.6 4.9 46 67-113 141-191 (371)
29 3k4h_A Putative transcriptiona 70.5 11 0.00036 26.9 5.9 46 67-113 116-164 (292)
30 3miz_A Putative transcriptiona 70.2 9.5 0.00032 27.4 5.6 46 67-113 116-164 (301)
31 1dbq_A Purine repressor; trans 70.1 11 0.00036 26.8 5.8 45 68-113 112-159 (289)
32 3g85_A Transcriptional regulat 69.3 9.7 0.00033 27.1 5.4 46 67-113 112-160 (289)
33 3clk_A Transcription regulator 69.0 13 0.00044 26.6 6.1 46 67-113 110-158 (290)
34 3brq_A HTH-type transcriptiona 68.9 11 0.00037 26.7 5.6 45 68-113 125-172 (296)
35 3ff4_A Uncharacterized protein 68.1 4.4 0.00015 27.1 3.1 36 73-114 74-109 (122)
36 2fep_A Catabolite control prot 67.8 11 0.00037 27.1 5.5 45 68-113 119-167 (289)
37 3tb6_A Arabinose metabolism tr 67.4 12 0.00041 26.5 5.6 47 67-113 122-169 (298)
38 3cs3_A Sugar-binding transcrip 67.4 12 0.00041 26.5 5.6 46 67-113 103-151 (277)
39 3kke_A LACI family transcripti 66.9 12 0.00041 27.1 5.6 46 67-113 116-164 (303)
40 3k9c_A Transcriptional regulat 66.6 16 0.00055 26.1 6.2 46 67-113 111-158 (289)
41 3hcw_A Maltose operon transcri 66.5 11 0.00038 27.1 5.3 46 67-113 116-164 (295)
42 1y81_A Conserved hypothetical 66.4 7.1 0.00024 26.3 4.0 34 75-114 87-120 (138)
43 2qu7_A Putative transcriptiona 66.2 13 0.00046 26.4 5.7 45 68-113 108-155 (288)
44 3c3k_A Alanine racemase; struc 66.2 11 0.00039 26.9 5.3 45 68-113 110-157 (285)
45 2fb6_A Conserved hypothetical 66.1 13 0.00045 24.5 5.2 52 62-113 18-74 (117)
46 3rot_A ABC sugar transporter, 65.7 12 0.00041 26.9 5.4 46 67-113 113-163 (297)
47 3m0z_A Putative aldolase; MCSG 65.5 13 0.00046 28.3 5.6 36 76-111 153-188 (249)
48 3qk7_A Transcriptional regulat 65.4 12 0.00042 26.8 5.4 46 67-113 111-159 (294)
49 3huu_A Transcription regulator 65.2 13 0.00044 26.8 5.5 46 67-113 129-177 (305)
50 2hsg_A Glucose-resistance amyl 64.3 13 0.00043 27.3 5.3 46 67-113 162-211 (332)
51 3dbi_A Sugar-binding transcrip 64.2 14 0.00048 27.2 5.5 46 67-113 166-214 (338)
52 2d59_A Hypothetical protein PH 63.9 5.3 0.00018 27.0 2.9 36 73-114 93-128 (144)
53 2o20_A Catabolite control prot 63.6 16 0.00055 26.8 5.8 45 68-113 166-213 (332)
54 3ctp_A Periplasmic binding pro 62.6 15 0.00053 26.9 5.5 44 69-113 159-205 (330)
55 2rgy_A Transcriptional regulat 62.4 16 0.00055 26.1 5.5 45 68-113 114-161 (290)
56 3bbl_A Regulatory protein of L 62.4 14 0.00046 26.5 5.1 47 62-113 109-158 (287)
57 1qpz_A PURA, protein (purine n 62.4 15 0.0005 27.1 5.4 44 69-113 164-210 (340)
58 3e3m_A Transcriptional regulat 62.2 14 0.00047 27.5 5.3 46 67-113 172-221 (355)
59 3e61_A Putative transcriptiona 61.9 12 0.00042 26.3 4.7 47 66-113 106-155 (277)
60 3snr_A Extracellular ligand-bi 61.5 16 0.00055 26.5 5.4 46 67-113 120-166 (362)
61 2x41_A Beta-glucosidase; hydro 61.5 7.6 0.00026 33.3 4.1 54 58-111 88-158 (721)
62 3h5t_A Transcriptional regulat 61.3 13 0.00044 27.7 5.0 47 67-113 174-239 (366)
63 2duw_A Putative COA-binding pr 60.9 5.4 0.00018 27.0 2.5 34 75-114 88-121 (145)
64 3gbv_A Putative LACI-family tr 60.6 16 0.00056 25.9 5.2 47 67-113 118-172 (304)
65 3noy_A 4-hydroxy-3-methylbut-2 60.5 6.5 0.00022 31.6 3.3 52 61-113 68-136 (366)
66 3uw2_A Phosphoglucomutase/phos 60.2 28 0.00097 28.3 7.1 59 54-114 34-94 (485)
67 3abz_A Beta-glucosidase I; gly 60.2 9.1 0.00031 33.6 4.4 54 58-111 71-141 (845)
68 3o74_A Fructose transport syst 59.9 15 0.00051 25.7 4.9 46 67-113 105-153 (272)
69 1iuk_A Hypothetical protein TT 59.7 6.3 0.00022 26.6 2.7 35 74-114 87-121 (140)
70 3m6y_A 4-hydroxy-2-oxoglutarat 59.3 14 0.00049 28.5 4.8 37 76-112 176-212 (275)
71 2fvy_A D-galactose-binding per 59.3 24 0.00081 25.1 5.9 52 61-113 111-173 (309)
72 2w4l_A DCMP deaminse, deoxycyt 59.2 16 0.00055 26.0 4.9 39 73-113 110-149 (178)
73 3sg0_A Extracellular ligand-bi 58.2 23 0.00079 25.9 5.8 46 67-113 144-190 (386)
74 2q28_A Oxalyl-COA decarboxylas 57.9 9.4 0.00032 31.0 3.9 41 68-114 9-49 (564)
75 3bmx_A Uncharacterized lipopro 57.4 4.9 0.00017 34.1 2.1 54 58-111 145-216 (642)
76 2c31_A Oxalyl-COA decarboxylas 57.3 9.8 0.00033 31.0 3.9 41 68-114 11-51 (568)
77 3o1i_D Periplasmic protein TOR 56.7 13 0.00043 26.5 4.1 46 67-113 116-169 (304)
78 1p5d_X PMM, phosphomannomutase 56.7 33 0.0011 27.4 6.9 58 54-113 20-79 (463)
79 3l49_A ABC sugar (ribose) tran 56.7 25 0.00085 24.8 5.6 46 67-113 108-159 (291)
80 3eya_A Pyruvate dehydrogenase 55.6 12 0.0004 30.5 4.1 41 68-114 4-45 (549)
81 2yfo_A Alpha-galactosidase-suc 55.4 9.2 0.00032 32.8 3.6 40 73-113 351-408 (720)
82 3hg3_A Alpha-galactosidase A; 54.9 24 0.00081 28.4 5.7 52 61-113 33-100 (404)
83 4evq_A Putative ABC transporte 54.7 28 0.00096 25.5 5.8 45 68-113 137-182 (375)
84 4fe7_A Xylose operon regulator 54.3 28 0.00097 26.6 5.9 45 67-112 124-173 (412)
85 3lq1_A 2-succinyl-5-enolpyruvy 54.1 15 0.00051 30.1 4.5 46 63-114 7-53 (578)
86 1hjs_A Beta-1,4-galactanase; 4 53.6 16 0.00054 28.1 4.3 41 74-114 33-77 (332)
87 3kjx_A Transcriptional regulat 52.2 14 0.00047 27.3 3.7 45 68-113 171-219 (344)
88 3hut_A Putative branched-chain 52.0 27 0.00092 25.5 5.3 44 69-113 126-170 (358)
89 3g1w_A Sugar ABC transporter; 51.5 23 0.00079 25.3 4.7 46 67-113 110-159 (305)
90 3fwz_A Inner membrane protein 51.3 24 0.00081 23.0 4.4 22 68-89 17-38 (140)
91 3jvd_A Transcriptional regulat 51.3 30 0.001 25.5 5.5 45 67-112 159-206 (333)
92 4h41_A Putative alpha-L-fucosi 51.3 15 0.0005 29.0 3.9 39 74-113 60-116 (340)
93 1ovm_A Indole-3-pyruvate decar 50.3 16 0.00056 29.4 4.2 40 68-113 6-46 (552)
94 1weh_A Conserved hypothetical 50.1 38 0.0013 23.6 5.6 40 63-112 19-58 (171)
95 1zy9_A Alpha-galactosidase; TM 49.9 15 0.00052 30.6 4.0 41 71-113 215-266 (564)
96 2hc5_A ORF 99, hypothetical pr 49.3 33 0.0011 23.0 4.9 33 14-46 53-85 (117)
97 1wek_A Hypothetical protein TT 49.3 33 0.0011 25.1 5.3 40 63-112 55-94 (217)
98 4do4_A Alpha-N-acetylgalactosa 48.8 20 0.00068 27.6 4.3 50 63-113 35-99 (400)
99 2uz1_A Benzaldehyde lyase; thi 48.7 11 0.00039 30.6 3.0 41 68-114 5-45 (563)
100 2oxn_A Beta-hexosaminidase; TI 48.7 23 0.00077 27.8 4.6 51 61-111 87-155 (340)
101 3hs3_A Ribose operon repressor 47.9 25 0.00086 24.9 4.4 44 68-113 109-155 (277)
102 1jye_A Lactose operon represso 47.8 31 0.001 25.5 5.1 45 68-113 165-212 (349)
103 3e38_A Two-domain protein cont 47.7 25 0.00084 27.5 4.7 42 73-114 39-89 (343)
104 2rjo_A Twin-arginine transloca 47.6 34 0.0012 24.9 5.2 45 68-113 120-170 (332)
105 2pgn_A Cyclohexane-1,2-dione h 47.3 22 0.00075 29.1 4.5 41 68-114 5-47 (589)
106 2h3h_A Sugar ABC transporter, 46.6 25 0.00084 25.4 4.3 49 62-113 105-156 (313)
107 4eyg_A Twin-arginine transloca 46.6 45 0.0016 24.2 5.8 46 67-113 124-170 (368)
108 2yb1_A Amidohydrolase; HET: AM 46.5 24 0.00084 26.3 4.3 40 72-114 21-60 (292)
109 2vk8_A Pyruvate decarboxylase 46.4 16 0.00056 29.6 3.6 40 69-114 6-46 (563)
110 2vbf_A Branched-chain alpha-ke 46.1 21 0.00071 29.0 4.2 40 68-113 26-66 (570)
111 2csu_A 457AA long hypothetical 46.0 19 0.00064 29.0 3.8 44 70-114 77-125 (457)
112 4feg_A Pyruvate oxidase; carba 45.8 21 0.00073 29.3 4.2 41 68-114 12-54 (603)
113 3ksm_A ABC-type sugar transpor 45.1 22 0.00077 24.7 3.7 51 62-113 107-161 (276)
114 3tha_A Tryptophan synthase alp 44.9 13 0.00043 28.2 2.5 40 71-114 106-145 (252)
115 3llv_A Exopolyphosphatase-rela 44.7 51 0.0017 20.9 5.3 22 68-89 16-37 (141)
116 2wvg_A PDC, pyruvate decarboxy 44.6 18 0.0006 29.5 3.5 39 69-113 5-44 (568)
117 3zyz_A Beta-D-glucoside glucoh 44.3 20 0.00068 30.8 3.9 54 58-111 82-153 (713)
118 4g6c_A Beta-hexosaminidase 1; 44.0 47 0.0016 26.1 5.8 48 64-111 107-171 (348)
119 2yv1_A Succinyl-COA ligase [AD 44.0 31 0.001 26.1 4.6 43 70-114 83-125 (294)
120 3i09_A Periplasmic branched-ch 43.9 45 0.0015 24.5 5.4 45 68-113 126-171 (375)
121 1uas_A Alpha-galactosidase; TI 43.9 19 0.00066 27.8 3.5 52 61-113 23-90 (362)
122 2x7j_A 2-succinyl-5-enolpyruvy 43.7 18 0.0006 29.8 3.4 44 65-114 29-73 (604)
123 3bil_A Probable LACI-family tr 43.5 55 0.0019 24.2 5.9 42 69-111 171-215 (348)
124 2xn2_A Alpha-galactosidase; hy 43.4 27 0.00094 29.9 4.6 42 71-113 353-412 (732)
125 3mi6_A Alpha-galactosidase; NE 43.4 26 0.0009 30.4 4.5 42 71-113 350-409 (745)
126 3lop_A Substrate binding perip 43.1 42 0.0014 24.6 5.2 44 69-113 128-172 (364)
127 1hg3_A Triosephosphate isomera 42.6 9.6 0.00033 28.2 1.5 46 68-114 75-121 (225)
128 3o0f_A Putative metal-dependen 42.3 35 0.0012 26.2 4.7 40 72-114 32-71 (301)
129 1pea_A Amidase operon; gene re 42.3 44 0.0015 24.8 5.2 44 69-113 127-171 (385)
130 2ze3_A DFA0005; organic waste 42.1 36 0.0012 25.8 4.7 38 75-113 99-146 (275)
131 1w0m_A TIM, triosephosphate is 41.5 10 0.00035 28.2 1.5 46 68-114 72-118 (226)
132 2dri_A D-ribose-binding protei 41.4 51 0.0017 23.1 5.2 49 62-113 105-156 (271)
133 3f4w_A Putative hexulose 6 pho 41.4 52 0.0018 22.7 5.2 39 72-113 68-106 (211)
134 3ipc_A ABC transporter, substr 41.1 46 0.0016 24.1 5.1 44 69-113 124-169 (356)
135 1ozh_A ALS, acetolactate synth 41.1 16 0.00054 29.8 2.7 40 68-113 12-51 (566)
136 3uug_A Multiple sugar-binding 41.1 44 0.0015 24.0 4.9 48 61-109 107-160 (330)
137 2ekc_A AQ_1548, tryptophan syn 41.0 37 0.0013 25.1 4.5 39 71-113 112-150 (262)
138 1ybh_A Acetolactate synthase, 40.9 34 0.0012 28.0 4.7 41 68-114 13-54 (590)
139 3h5o_A Transcriptional regulat 40.8 42 0.0014 24.6 4.8 44 67-111 163-208 (339)
140 3hww_A 2-succinyl-5-enolpyruvy 40.5 28 0.00094 28.3 4.0 41 67-113 8-49 (556)
141 1qtw_A Endonuclease IV; DNA re 40.3 52 0.0018 23.2 5.1 41 73-113 17-63 (285)
142 2vbi_A Pyruvate decarboxylase; 39.4 18 0.00062 29.4 2.8 40 68-113 4-44 (566)
143 1yx1_A Hypothetical protein PA 39.3 28 0.00095 24.8 3.5 40 73-113 89-128 (264)
144 2iks_A DNA-binding transcripti 39.2 48 0.0016 23.5 4.8 44 68-112 124-170 (293)
145 2qul_A D-tagatose 3-epimerase; 39.1 61 0.0021 22.9 5.4 41 73-113 22-63 (290)
146 2yv2_A Succinyl-COA synthetase 38.9 41 0.0014 25.4 4.6 42 71-114 85-126 (297)
147 3brs_A Periplasmic binding pro 38.5 51 0.0018 23.1 4.9 44 68-112 115-163 (289)
148 1fob_A Beta-1,4-galactanase; B 38.4 33 0.0011 26.2 4.0 41 74-114 33-77 (334)
149 2ftp_A Hydroxymethylglutaryl-C 38.4 44 0.0015 25.1 4.7 41 72-113 87-140 (302)
150 2fqx_A Membrane lipoprotein TM 38.3 61 0.0021 23.9 5.4 50 61-112 108-160 (318)
151 1oi7_A Succinyl-COA synthetase 38.3 43 0.0015 25.2 4.6 42 70-113 77-118 (288)
152 3n0w_A ABC branched chain amin 38.1 59 0.002 23.9 5.3 45 68-113 128-173 (379)
153 3d02_A Putative LACI-type tran 38.0 1E+02 0.0034 21.7 6.4 43 67-110 110-157 (303)
154 2yxo_A Histidinol phosphatase; 38.0 51 0.0018 23.4 4.8 20 72-91 20-39 (267)
155 2hvw_A Deoxycytidylate deamina 37.9 22 0.00074 25.5 2.7 35 74-113 137-171 (184)
156 2zxd_A Alpha-L-fucosidase, put 37.8 40 0.0014 27.4 4.6 43 71-113 108-168 (455)
157 3a5v_A Alpha-galactosidase; be 37.5 40 0.0014 26.5 4.5 52 61-113 23-90 (397)
158 3cc1_A BH1870 protein, putativ 37.2 59 0.002 25.9 5.4 53 60-113 25-110 (433)
159 1szn_A Alpha-galactosidase; (b 37.1 37 0.0013 27.0 4.2 52 61-113 26-93 (417)
160 1fd9_A Protein (macrophage inf 36.9 35 0.0012 24.8 3.8 21 63-83 12-32 (213)
161 1vp8_A Hypothetical protein AF 36.5 44 0.0015 24.7 4.2 26 61-89 26-51 (201)
162 3i3w_A Phosphoglucosamine muta 36.5 1.2E+02 0.004 24.1 7.1 53 60-114 18-73 (443)
163 2nyt_A Probable C->U-editing e 36.0 52 0.0018 23.6 4.5 40 74-113 98-142 (190)
164 3tva_A Xylose isomerase domain 35.9 63 0.0021 23.0 5.0 41 73-113 26-67 (290)
165 3sql_A Glycosyl hydrolase fami 35.8 23 0.00079 29.6 2.9 48 64-111 125-190 (535)
166 3nav_A Tryptophan synthase alp 35.7 29 0.00099 26.2 3.2 39 71-113 115-153 (271)
167 3m9w_A D-xylose-binding peripl 35.5 58 0.002 23.3 4.8 46 67-113 107-160 (313)
168 2cw6_A Hydroxymethylglutaryl-C 35.5 52 0.0018 24.6 4.6 41 72-113 84-137 (298)
169 1usg_A Leucine-specific bindin 35.4 63 0.0021 23.2 5.0 43 70-113 125-169 (346)
170 1tg7_A Beta-galactosidase; TIM 34.7 36 0.0012 30.5 4.1 43 72-114 40-92 (971)
171 2qiw_A PEP phosphonomutase; st 33.8 33 0.0011 25.6 3.3 41 72-113 97-147 (255)
172 3osu_A 3-oxoacyl-[acyl-carrier 33.7 92 0.0032 21.8 5.6 40 67-110 14-53 (246)
173 2x7v_A Probable endonuclease 4 33.7 74 0.0025 22.4 5.1 41 73-113 17-63 (287)
174 4e8d_A Glycosyl hydrolase, fam 33.4 44 0.0015 28.4 4.2 43 72-114 36-88 (595)
175 2zvr_A Uncharacterized protein 33.4 51 0.0017 23.6 4.2 39 73-113 46-84 (290)
176 1tuo_A Putative phosphomannomu 33.3 1.6E+02 0.0054 23.4 7.4 54 58-113 24-79 (464)
177 3c85_A Putative glutathione-re 33.1 36 0.0012 22.8 3.2 21 68-88 49-70 (183)
178 2wvv_A Alpha-L-fucosidase; alp 33.0 53 0.0018 26.5 4.5 43 71-113 81-141 (450)
179 4fn4_A Short chain dehydrogena 32.9 70 0.0024 23.5 5.0 42 66-112 16-57 (254)
180 4acy_A Endo-alpha-mannosidase; 32.9 27 0.00093 27.7 2.8 40 73-113 108-149 (382)
181 4gvf_A Beta-hexosaminidase; TI 32.3 1E+02 0.0036 24.1 6.1 48 64-111 95-158 (349)
182 2qw5_A Xylose isomerase-like T 32.1 1E+02 0.0035 22.6 5.8 40 73-112 36-80 (335)
183 3pdk_A Phosphoglucosamine muta 32.0 1.3E+02 0.0045 24.1 6.8 56 57-114 35-93 (469)
184 2fp4_A Succinyl-COA ligase [GD 32.0 48 0.0016 25.2 4.0 44 69-114 83-127 (305)
185 3rrx_A EXO-1,3/1,4-beta-glucan 31.8 28 0.00095 30.6 2.9 52 58-109 131-199 (822)
186 8abp_A L-arabinose-binding pro 31.8 53 0.0018 23.2 4.0 51 61-111 109-164 (306)
187 1wdp_A Beta-amylase; (beta/alp 31.7 69 0.0024 26.7 5.0 39 75-113 40-86 (495)
188 1fa2_A Beta-amylase; TIM barre 31.5 68 0.0023 26.7 5.0 39 75-113 41-87 (498)
189 3qxb_A Putative xylose isomera 31.3 1E+02 0.0034 22.4 5.6 41 73-113 40-86 (316)
190 1gud_A ALBP, D-allose-binding 31.2 54 0.0019 23.2 4.0 48 62-113 114-167 (288)
191 2hnh_A DNA polymerase III alph 31.2 56 0.0019 29.0 4.7 41 71-114 25-65 (910)
192 3vnd_A TSA, tryptophan synthas 31.1 38 0.0013 25.5 3.2 39 71-113 113-151 (267)
193 2fn9_A Ribose ABC transporter, 31.0 56 0.0019 23.0 4.0 51 62-113 107-165 (290)
194 2x7x_A Sensor protein; transfe 30.8 44 0.0015 24.3 3.5 44 69-113 113-162 (325)
195 4iin_A 3-ketoacyl-acyl carrier 30.8 1.1E+02 0.0037 21.8 5.6 40 67-110 39-78 (271)
196 3kws_A Putative sugar isomeras 30.6 58 0.002 23.2 4.1 38 73-113 43-80 (287)
197 2pan_A Glyoxylate carboligase; 30.4 51 0.0017 27.0 4.1 40 68-113 28-68 (616)
198 1vq2_A DCMP deaminase, deoxycy 30.4 30 0.001 24.5 2.4 35 74-113 136-171 (193)
199 4gqr_A Pancreatic alpha-amylas 30.1 80 0.0027 24.1 5.0 47 68-114 23-94 (496)
200 3lmz_A Putative sugar isomeras 29.7 1.1E+02 0.0039 21.3 5.5 41 72-113 34-77 (257)
201 2jwk_A Protein TOLR; periplasm 29.6 82 0.0028 18.0 5.9 21 92-112 54-74 (74)
202 1n13_A PVLARGDC, pyruvoyl-depe 29.4 33 0.0011 20.1 2.0 17 96-112 28-44 (52)
203 3ckm_A YRAM (HI1655), LPOA; pe 29.3 49 0.0017 24.2 3.5 45 69-114 111-156 (327)
204 1ydn_A Hydroxymethylglutaryl-C 29.2 65 0.0022 23.9 4.2 40 73-113 84-136 (295)
205 2nu8_A Succinyl-COA ligase [AD 29.1 74 0.0025 23.7 4.6 43 70-114 77-119 (288)
206 1t9b_A Acetolactate synthase, 29.0 36 0.0012 28.7 3.0 41 67-113 82-123 (677)
207 2h4a_A YRAM (HI1655); perplasm 28.9 51 0.0017 24.8 3.6 44 70-114 110-154 (325)
208 1jx6_A LUXP protein; protein-l 28.6 97 0.0033 22.4 5.1 43 68-111 159-205 (342)
209 3lkb_A Probable branched-chain 28.3 71 0.0024 23.6 4.3 44 69-113 129-174 (392)
210 2ywl_A Thioredoxin reductase r 28.0 1.3E+02 0.0044 19.6 5.9 44 69-113 12-73 (180)
211 3l6u_A ABC-type sugar transpor 28.0 32 0.0011 24.2 2.2 52 62-113 112-169 (293)
212 2ioy_A Periplasmic sugar-bindi 27.8 68 0.0023 22.6 4.0 44 69-113 108-157 (283)
213 3lrk_A Alpha-galactosidase 1; 27.8 58 0.002 26.9 4.0 52 61-113 44-110 (479)
214 3ues_A Alpha-1,3/4-fucosidase; 27.8 96 0.0033 25.3 5.3 43 71-113 65-128 (478)
215 3og2_A Beta-galactosidase; TIM 27.6 50 0.0017 29.9 3.7 43 72-114 60-112 (1003)
216 1owl_A Photolyase, deoxyribodi 27.6 1E+02 0.0034 24.8 5.3 43 70-113 81-124 (484)
217 3thd_A Beta-galactosidase; TIM 27.6 61 0.0021 27.8 4.2 44 71-114 43-96 (654)
218 4g81_D Putative hexonate dehyd 27.4 74 0.0025 23.4 4.2 41 67-112 19-59 (255)
219 1rcu_A Conserved hypothetical 27.3 1.2E+02 0.004 21.7 5.2 40 63-112 44-83 (195)
220 1ydh_A AT5G11950; structural g 27.2 1.4E+02 0.0049 21.5 5.7 40 64-112 28-67 (216)
221 1v5e_A Pyruvate oxidase; oxido 27.1 21 0.00073 29.3 1.2 40 68-113 5-46 (590)
222 3lyl_A 3-oxoacyl-(acyl-carrier 27.0 1.3E+02 0.0044 20.8 5.3 39 67-110 15-53 (247)
223 4b4k_A N5-carboxyaminoimidazol 26.9 1.1E+02 0.0037 22.1 4.9 41 73-114 41-81 (181)
224 3d3a_A Beta-galactosidase; pro 26.6 53 0.0018 27.7 3.6 44 71-114 40-93 (612)
225 1wqa_A Phospho-sugar mutase; a 26.5 2.2E+02 0.0075 22.4 7.1 58 54-113 11-72 (455)
226 3i6i_A Putative leucoanthocyan 26.4 1.4E+02 0.0047 21.8 5.6 24 68-92 21-44 (346)
227 4da9_A Short-chain dehydrogena 26.4 1.4E+02 0.0047 21.5 5.5 40 67-110 39-78 (280)
228 3ewb_X 2-isopropylmalate synth 26.3 1.1E+02 0.0039 22.9 5.2 22 62-83 115-136 (293)
229 3rg8_A Phosphoribosylaminoimid 26.1 1.6E+02 0.0056 20.6 5.6 40 73-113 21-61 (159)
230 3sju_A Keto reductase; short-c 26.0 1.1E+02 0.0039 21.9 5.0 39 67-110 34-72 (279)
231 2xfr_A Beta-amylase; hydrolase 25.9 99 0.0034 26.0 5.0 39 75-113 38-84 (535)
232 2z0f_A Putative phosphoglucomu 25.7 1.4E+02 0.0048 24.1 5.9 55 59-113 38-93 (524)
233 3nkl_A UDP-D-quinovosamine 4-d 25.6 90 0.0031 19.8 4.0 35 77-113 61-95 (141)
234 3dmy_A Protein FDRA; predicted 25.6 71 0.0024 26.2 4.1 40 72-114 51-90 (480)
235 2qjg_A Putative aldolase MJ040 25.5 1.1E+02 0.0036 22.1 4.8 18 68-85 132-149 (273)
236 1q6z_A BFD, BFDC, benzoylforma 25.2 29 0.00099 27.8 1.7 38 69-113 4-41 (528)
237 2nxw_A Phenyl-3-pyruvate decar 25.1 71 0.0024 25.9 4.1 39 67-111 21-59 (565)
238 3v2g_A 3-oxoacyl-[acyl-carrier 25.0 1.5E+02 0.0053 21.2 5.6 41 66-110 40-80 (271)
239 3qc0_A Sugar isomerase; TIM ba 25.0 47 0.0016 23.3 2.6 39 73-113 23-61 (275)
240 3vup_A Beta-1,4-mannanase; TIM 24.9 1.6E+02 0.0056 20.4 5.6 44 71-114 45-107 (351)
241 3jr2_A Hexulose-6-phosphate sy 24.9 1.3E+02 0.0044 21.1 5.0 40 71-113 73-112 (218)
242 3ksu_A 3-oxoacyl-acyl carrier 24.9 1.3E+02 0.0045 21.3 5.2 42 67-110 21-62 (262)
243 3aam_A Endonuclease IV, endoiv 24.9 1.1E+02 0.0036 21.6 4.6 39 73-111 19-63 (270)
244 3p6l_A Sugar phosphate isomera 24.7 1.6E+02 0.0055 20.5 5.5 41 73-113 27-79 (262)
245 3ble_A Citramalate synthase fr 24.7 76 0.0026 24.3 4.0 40 73-113 101-153 (337)
246 3is3_A 17BETA-hydroxysteroid d 24.7 1.6E+02 0.0055 20.9 5.6 41 66-110 27-67 (270)
247 3sx6_A Sulfide-quinone reducta 24.6 1.4E+02 0.0046 23.0 5.4 52 63-114 164-226 (437)
248 4dmm_A 3-oxoacyl-[acyl-carrier 24.5 1.6E+02 0.0055 21.0 5.6 40 67-110 38-77 (269)
249 3td9_A Branched chain amino ac 24.4 1.9E+02 0.0065 20.9 6.0 46 68-113 134-181 (366)
250 1o4v_A Phosphoribosylaminoimid 24.4 1.4E+02 0.0047 21.6 5.0 41 73-114 32-72 (183)
251 2gfq_A UPF0204 protein PH0006; 24.3 1.2E+02 0.004 23.5 4.9 38 75-114 254-294 (298)
252 3l9w_A Glutathione-regulated p 24.3 94 0.0032 24.5 4.5 22 68-89 14-35 (413)
253 4grd_A N5-CAIR mutase, phospho 24.2 1.7E+02 0.0057 21.0 5.4 40 74-114 32-71 (173)
254 3obe_A Sugar phosphate isomera 24.2 75 0.0026 23.3 3.7 41 73-113 41-92 (305)
255 3tfo_A Putative 3-oxoacyl-(acy 24.1 1.5E+02 0.005 21.3 5.3 39 67-110 14-52 (264)
256 1gvf_A Tagatose-bisphosphate a 24.0 1.4E+02 0.0047 22.8 5.3 41 72-113 88-131 (286)
257 3ble_A Citramalate synthase fr 23.9 1.2E+02 0.0043 23.1 5.1 34 74-107 175-208 (337)
258 1id1_A Putative potassium chan 23.8 1.5E+02 0.0051 19.0 5.8 22 68-89 13-34 (153)
259 3c9i_A Tail needle protein GP2 23.7 39 0.0013 25.3 2.0 16 97-112 226-241 (242)
260 2whl_A Beta-mannanase, baman5; 23.6 1E+02 0.0034 22.4 4.3 41 74-114 37-81 (294)
261 2cw6_A Hydroxymethylglutaryl-C 23.6 1.3E+02 0.0045 22.3 5.1 20 63-82 116-135 (298)
262 3na5_A Phosphoglucomutase; iso 23.4 2.1E+02 0.007 23.6 6.6 53 60-114 79-134 (570)
263 3txv_A Probable tagatose 6-pho 23.4 2.2E+02 0.0076 23.3 6.6 48 62-110 105-163 (450)
264 2f7l_A 455AA long hypothetical 23.4 2.1E+02 0.0074 22.5 6.5 52 58-113 15-68 (455)
265 3tjr_A Short chain dehydrogena 23.4 1.5E+02 0.0052 21.5 5.3 40 66-110 40-79 (301)
266 3ftp_A 3-oxoacyl-[acyl-carrier 23.3 1.5E+02 0.0053 21.1 5.3 40 66-110 37-76 (270)
267 3vni_A Xylose isomerase domain 23.3 1.3E+02 0.0044 21.3 4.8 41 73-113 22-63 (294)
268 3i1j_A Oxidoreductase, short c 23.2 1.6E+02 0.0055 20.2 5.2 38 67-109 24-61 (247)
269 2pfu_A Biopolymer transport EX 23.2 1.3E+02 0.0045 18.1 4.5 21 92-112 66-86 (99)
270 3u9l_A 3-oxoacyl-[acyl-carrier 23.2 1.7E+02 0.0058 21.7 5.6 43 67-110 15-58 (324)
271 2hqb_A Transcriptional activat 23.0 1.8E+02 0.006 21.0 5.6 46 61-111 108-153 (296)
272 3f2b_A DNA-directed DNA polyme 22.9 83 0.0028 28.5 4.3 42 70-114 134-175 (1041)
273 1qyc_A Phenylcoumaran benzylic 22.8 1.3E+02 0.0044 21.3 4.7 24 68-92 15-38 (308)
274 1tjy_A Sugar transport protein 22.8 1.4E+02 0.0047 21.5 4.9 49 62-112 109-162 (316)
275 3s55_A Putative short-chain de 22.6 2E+02 0.0068 20.4 5.8 24 67-91 20-43 (281)
276 3jy6_A Transcriptional regulat 22.5 47 0.0016 23.3 2.2 44 66-110 107-154 (276)
277 3awd_A GOX2181, putative polyo 22.4 1.8E+02 0.006 20.1 5.3 22 67-88 23-44 (260)
278 3i45_A Twin-arginine transloca 22.3 1.7E+02 0.0057 21.5 5.4 46 67-113 127-175 (387)
279 3cqj_A L-ribulose-5-phosphate 22.3 2E+02 0.0067 20.4 5.7 41 73-113 35-82 (295)
280 1gtk_A Porphobilinogen deamina 22.3 1.1E+02 0.0037 23.9 4.4 45 29-85 258-302 (313)
281 4aie_A Glucan 1,6-alpha-glucos 22.1 64 0.0022 25.4 3.1 40 75-114 39-97 (549)
282 3qua_A Putative uncharacterize 22.1 2.2E+02 0.0074 20.4 5.8 41 63-112 39-79 (199)
283 3ucx_A Short chain dehydrogena 22.1 1.7E+02 0.006 20.6 5.3 38 68-110 22-59 (264)
284 2q02_A Putative cytoplasmic pr 22.0 1.4E+02 0.0049 20.7 4.8 41 73-113 24-67 (272)
285 3sbx_A Putative uncharacterize 22.0 1.7E+02 0.006 20.7 5.2 41 63-112 30-70 (189)
286 4f06_A Extracellular ligand-bi 21.9 1.4E+02 0.0048 22.0 4.9 46 67-113 124-170 (371)
287 1t35_A Hypothetical protein YV 21.8 1.5E+02 0.0051 20.8 4.8 41 63-112 19-59 (191)
288 1np7_A DNA photolyase; protein 21.8 99 0.0034 24.8 4.3 42 71-113 90-132 (489)
289 4hjh_A Phosphomannomutase; str 21.6 2.4E+02 0.0083 22.4 6.5 51 62-114 25-81 (481)
290 3zyy_X Iron-sulfur cluster bin 21.6 1.8E+02 0.0061 24.8 5.9 38 16-53 204-241 (631)
291 1ydo_A HMG-COA lyase; TIM-barr 21.6 96 0.0033 23.5 3.9 39 74-113 87-138 (307)
292 3a21_A Putative secreted alpha 21.4 1.1E+02 0.0036 25.4 4.5 54 59-113 24-93 (614)
293 4ad1_A Glycosyl hydrolase fami 21.4 74 0.0025 25.1 3.3 41 72-113 108-151 (380)
294 3l23_A Sugar phosphate isomera 21.4 90 0.0031 22.8 3.7 41 73-113 34-75 (303)
295 2zds_A Putative DNA-binding pr 21.3 1.6E+02 0.0055 21.2 5.1 41 73-113 20-67 (340)
296 2jah_A Clavulanic acid dehydro 21.2 1.9E+02 0.0065 20.1 5.3 21 68-88 18-38 (247)
297 3t7c_A Carveol dehydrogenase; 21.2 2E+02 0.0069 20.7 5.6 22 67-88 38-59 (299)
298 3h7a_A Short chain dehydrogena 21.1 1.4E+02 0.0049 21.0 4.6 24 67-91 17-40 (252)
299 2isw_A Putative fructose-1,6-b 21.0 1.7E+02 0.0057 22.9 5.2 41 72-113 89-132 (323)
300 3e8x_A Putative NAD-dependent 20.9 1.2E+02 0.0042 20.7 4.2 25 67-92 31-55 (236)
301 3ors_A N5-carboxyaminoimidazol 20.9 1.5E+02 0.0053 20.9 4.6 42 72-114 21-62 (163)
302 3ngf_A AP endonuclease, family 20.9 95 0.0033 21.9 3.6 37 73-113 28-64 (269)
303 2hq1_A Glucose/ribitol dehydro 20.9 1.9E+02 0.0064 19.7 5.2 25 67-91 15-39 (247)
304 1ujp_A Tryptophan synthase alp 20.8 58 0.002 24.4 2.5 39 71-113 109-147 (271)
305 3ijr_A Oxidoreductase, short c 20.8 1.8E+02 0.0062 21.0 5.2 22 67-88 57-78 (291)
306 3sc4_A Short chain dehydrogena 20.8 1.3E+02 0.0046 21.6 4.5 43 67-110 19-64 (285)
307 3lft_A Uncharacterized protein 20.7 1.6E+02 0.0053 20.9 4.8 42 72-113 121-165 (295)
308 3r2g_A Inosine 5'-monophosphat 20.7 1.6E+02 0.0055 23.1 5.2 41 71-113 102-144 (361)
309 3oe2_A Peptidyl-prolyl CIS-tra 20.6 21 0.00072 26.3 0.0 23 61-83 21-43 (219)
310 3nco_A Endoglucanase fncel5A; 20.4 92 0.0032 22.8 3.6 44 71-114 44-99 (320)
311 2nut_C Vesicle-trafficking pro 20.4 2.2E+02 0.0076 19.7 5.7 44 30-79 4-47 (196)
312 3rkr_A Short chain oxidoreduct 20.3 2E+02 0.0069 20.2 5.3 39 67-110 39-77 (262)
313 2dcl_A Hypothetical UPF0166 pr 20.2 70 0.0024 21.5 2.6 22 69-91 27-48 (127)
314 3qiv_A Short-chain dehydrogena 20.2 2.1E+02 0.0071 19.8 5.3 22 67-88 19-40 (253)
315 3pp8_A Glyoxylate/hydroxypyruv 20.0 1.5E+02 0.0051 22.5 4.7 42 68-111 149-196 (315)
316 1tqz_A Necap1; endocytosis, st 20.0 86 0.0029 21.6 3.0 30 18-47 44-73 (133)
No 1
>3r8s_O 50S ribosomal protein L18; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_O 3j19_O 2wwq_O 3oat_O* 3oas_O* 3ofd_O 3ofc_O 3ofr_O* 3ofz_O* 3og0_O 3ofq_O 3r8t_O 3i1n_O 1p85_M 1p86_M 1vs8_O 1vs6_O 2aw4_O 2awb_O 1vt2_O ...
Probab=100.00 E-value=2.4e-42 Score=241.48 Aligned_cols=97 Identities=35% Similarity=0.454 Sum_probs=95.2
Q ss_pred CCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcch
Q 033650 16 SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRY 95 (114)
Q Consensus 16 ~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~y 95 (114)
+++|||+|++||+|||||||||++|+||+||||+|+++++++.+++|++||+.||++||+||+++||++|+|| ||+++|
T Consensus 20 ~~rpRL~V~rSnkhIyAQiidd~~g~tlasAST~e~~~~~~~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-rgg~~y 98 (116)
T 3r8s_O 20 LGATRLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFD-RSGFQY 98 (116)
T ss_dssp TTCCEEEEEECSSCEEEEEECTTSSCEEEECCSSSHHHHTTCSCSSSHHHHHHHHHHHHHHHHTTTCCCCEEE-CTTSCS
T ss_pred CCCCEEEEEEeCCEEEEEEEEcCCCeEEEEEeeCchhhccccCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCCCcc
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999 799999
Q ss_pred hhHHHHHHHHHHHcCccc
Q 033650 96 HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 96 hGrv~a~~~~lre~Gl~~ 113 (114)
||||+||+|++||+||+|
T Consensus 99 hGrV~Ala~~are~Gl~f 116 (116)
T 3r8s_O 99 HGRVQALADAAREAGLQF 116 (116)
T ss_dssp SSHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHHHhCCCC
Confidence 999999999999999998
No 2
>3bbo_Q Ribosomal protein L18; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=100.00 E-value=5.1e-42 Score=250.88 Aligned_cols=101 Identities=27% Similarity=0.392 Sum_probs=96.0
Q ss_pred cCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccC--CCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033650 12 TYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIG--CTRDVAAASKIGKLLGERLLLKDIPAVSVFL 89 (114)
Q Consensus 12 ~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~--~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~ 89 (114)
..++.++|||+|++||+|||||||||.+|+||+||||+||++++.++ +++|++||+.||++||+||+++||++|+||
T Consensus 59 i~gt~~rPRL~V~rSnkhIyAQvIdd~~g~tLasASTlek~lk~~l~~g~~~n~~AA~~VG~liAeRA~e~GI~~VvFD- 137 (161)
T 3bbo_Q 59 VEGTPERPRLCVFRSNKHLYVQVIDDSKMHTLASASTMQKSISEELDYSSSPTIEVAKKVGEVIASACLEKGITKVAFD- 137 (161)
T ss_dssp GGGSSSCCCCEEEECSSCEEEEEECCTTSCEEEEEEHHHHHHHHCCTTCCSSSHHHHHHHHHHSSSHHHHTSSCCCCCC-
T ss_pred hccCCCCCEEEEEecCCeEEEEEEECCCCEEEEEEeCCcHHHHhhccccCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-
Confidence 35668899999999999999999999999999999999999997666 789999999999999999999999999988
Q ss_pred CCCcchhhHHHHHHHHHHHcCccc
Q 033650 90 KREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 90 r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
||+|+|||||+||+|++||+||+|
T Consensus 138 Rgg~~YhGRVkAladaaRe~GL~F 161 (161)
T 3bbo_Q 138 RGGYPYHGRVKALADAAREKGLQF 161 (161)
T ss_dssp CSSSCSSSTTHHHHHHHTTTTCCC
T ss_pred CCCCcchHHHHHHHHHHHHhCCcC
Confidence 899999999999999999999997
No 3
>1ovy_A 50S ribosomal protein L18; ribosome; NMR {Geobacillus stearothermophilus} SCOP: c.55.4.1
Probab=100.00 E-value=6.6e-41 Score=235.35 Aligned_cols=99 Identities=32% Similarity=0.487 Sum_probs=93.3
Q ss_pred cCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC
Q 033650 12 TYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKR 91 (114)
Q Consensus 12 ~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~ 91 (114)
..++.++|||+|++||+|||||||||++|+||+||||+||+++ +++++|++||+.||++||+||+++||++|+|| ||
T Consensus 22 i~gt~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAsT~e~~~~--~~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD-rg 98 (120)
T 1ovy_A 22 IFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDKEFG--LDSTNNIEAAKKVGELVAKRALEKGIKQVVFD-RG 98 (120)
T ss_dssp --CCSSCCSEEEEEETTEEEEEEECCSSCCCEEEESTTSTTTC--SSCTTSHHHHHHHHHHHHHHHHHHSSSCCCCC-ST
T ss_pred hcCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEecCchhhC--cCCCCcHHHHHHHHHHHHHHHHHCCCCEEEEe-cC
Confidence 3566889999999999999999999999999999999999987 67889999999999999999999999999988 89
Q ss_pred CcchhhHHHHHHHHHHHcCccc
Q 033650 92 EQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 92 ~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+++|||||+||+|++||+||+|
T Consensus 99 g~~yhgrV~ala~~are~GL~f 120 (120)
T 1ovy_A 99 GYLYHGRVKALADAAREAGLEF 120 (120)
T ss_dssp TCSSCSSTHHHHHHHHHHHCCC
T ss_pred CccccHHHHHHHHHHHHhCCcC
Confidence 9999999999999999999997
No 4
>3v2d_S 50S ribosomal protein L18; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_M 2hgj_R 2hgq_R 2hgu_R 1vsa_M 2j03_S 2jl6_S 2jl8_S 2v47_S 2v49_S 2wdi_S 2wdj_S 2wdl_S 2wdn_S 2wh2_S 2wh4_S 2wrj_S 2wrl_S 2wro_S 2wrr_S ...
Probab=100.00 E-value=1e-40 Score=231.93 Aligned_cols=94 Identities=27% Similarity=0.391 Sum_probs=89.4
Q ss_pred CCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC
Q 033650 13 YQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKRE 92 (114)
Q Consensus 13 ~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~ 92 (114)
.++. +|||+|++||+|||||||||++|+||+||||+||+++ ++|++||+.||++||+||+++||++|+|| ||+
T Consensus 19 ~gt~-rpRL~V~rSnkhiyAQiidd~~~~tlasAsT~e~~~k-----~~n~~AA~~vG~llA~ra~~~GI~~vvfD-rgg 91 (112)
T 3v2d_S 19 KRTG-RLRLSVFRSLKHIYAQIIDDEKGVTLVSASSLALKLK-----GNKTEVARQVGRALAEKALALGIKQVAFD-RGP 91 (112)
T ss_dssp HHTC-CCEEEEEECSSCEEEEEEETTTTEEEEEEETTTTTCC-----CCHHHHHHHHHHHHHHHHHTTTCCBCEEE-CTT
T ss_pred cCCC-CCEEEEEEeCCeEEEEEEecCCCeEEEEEEecchhcc-----CCCHHHHHHHHHHHHHHHHHCCCCEEEEe-cCC
Confidence 3455 9999999999999999999999999999999999874 68999999999999999999999999999 899
Q ss_pred cchhhHHHHHHHHHHHcCccc
Q 033650 93 QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 93 ~~yhGrv~a~~~~lre~Gl~~ 113 (114)
|+|||||+||+|++||+||+|
T Consensus 92 ~~yhGrV~Ala~~are~GL~f 112 (112)
T 3v2d_S 92 YKYHGRVKALAEGAREGGLEF 112 (112)
T ss_dssp SCSCSSTTHHHHHHHHTTCBC
T ss_pred CcccHHHHHHHHHHHHcCCCC
Confidence 999999999999999999998
No 5
>2zjr_L 50S ribosomal protein L18; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.55.4.1 PDB: 1sm1_M* 2zjp_L* 2zjq_L 1nkw_M 3cf5_L* 3dll_L* 3pio_L* 3pip_L* 1nwy_M* 1nwx_M* 1xbp_M* 1pnu_M 1pny_M 1vor_P 1vou_P 1vow_P 1voy_P 1vp0_P
Probab=100.00 E-value=2.9e-39 Score=225.20 Aligned_cols=94 Identities=28% Similarity=0.375 Sum_probs=86.8
Q ss_pred CCC---CCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033650 13 YQP---SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFL 89 (114)
Q Consensus 13 ~~~---~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~ 89 (114)
.++ +++|||+|++||+|||||||||++|+||+||||.| + ++++|++||+.||++||+||+++||++|+||
T Consensus 18 ~gt~~~~~rpRL~V~rSnkhIyAQiidd~~~~tl~sAST~e--l----~~~~n~~AA~~vG~llA~Ral~~GI~~vvfD- 90 (114)
T 2zjr_L 18 RTTTAASGRLRLSVYRSSKHIYAQIIDDSRGQTLAAASSAA--L----KSGNKTDTAAAVGKALAAAAAEKGIKQVVFD- 90 (114)
T ss_dssp HSCSTTTCSEEECCCTTSSCCCCCEEETTTTEECCCCCSCS--C----CTTCSSSSHHHHHHHHHHHHHTTCCCCCEEC-
T ss_pred ccccCCCCCCEEEEEEeCCeEEEEEEEcCCCEEEEEEEchH--h----cCCCCHHHHHHHHHHHHHHHHHCCCCEEEEe-
Confidence 566 89999999999999999999999999999999999 3 4678999999999999999999999999988
Q ss_pred CCCcchhhHHHHHHHHHHHcCccc
Q 033650 90 KREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 90 r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
||+++|||||+||+|++||+||+|
T Consensus 91 rgg~~yhgrV~Ala~~are~GL~f 114 (114)
T 2zjr_L 91 RGSYKYHGRVKALADAAREGGLDF 114 (114)
T ss_dssp CCSSCSCSHHHHHHHHHHHHC---
T ss_pred cCCccccHHHHHHHHHHHHhCCcC
Confidence 899999999999999999999997
No 6
>1vq8_N 50S ribosomal protein L18P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.55.4.1 PDB: 1vq4_N* 1vq5_N* 1vq6_N* 1vq7_N* 1s72_N* 1vq9_N* 1vqk_N* 1vql_N* 1vqm_N* 1vqn_N* 1vqo_N* 1vqp_N* 1yhq_N* 1yi2_N* 1yij_N* 1yit_N* 1yj9_N* 1yjn_N* 1yjw_N* 2otj_N* ...
Probab=100.00 E-value=2.8e-35 Score=219.80 Aligned_cols=98 Identities=24% Similarity=0.145 Sum_probs=92.0
Q ss_pred CCCCCcEEEEEEeCCceeeEEE--ECCCCeEEEEecchhHhhhhcc-CCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecC
Q 033650 14 QPSEPYVLKMHLTNKYVSAQVV--HSPTATVASSASSQEKALRSTI-GCTRDVAAASKIGKLLGERLLLKDIPAVSVFLK 90 (114)
Q Consensus 14 ~~~~~~rL~V~~Snkhi~Aqvi--~~~~~~~l~saST~e~~~k~~l-~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r 90 (114)
..+++|||+|++||+||||||| ||++|+||+||||.||+ +..+ .+++|++||+.||++||+||+++||++|+|| |
T Consensus 28 ~~~~rpRL~V~rSnkhIyAQII~~dd~~~~tlasAsT~e~~-k~~~k~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-r 105 (187)
T 1vq8_N 28 LKSGKPRLVARKSNKHVRAQLVTLGPNGDDTLASAHSSDLA-EYGWEAPTGNMPSAYLTGLLAGLRAQEAGVEEAVLD-I 105 (187)
T ss_dssp HTTCSCEEEEEECSSCEEEEEEECCTTSCEEEEEEESGGGG-GGTCCSCSSSHHHHHHHHHHHHHHHHHTTCCBCEEE-C
T ss_pred HhcCCCEEEEEEeCCcEEEEEEEecCCCCEEEEEEEccchh-ccccccCCCcHHHHHHHHHHHHHHHHHCCCCEEEEc-C
Confidence 3478999999999999999999 99999999999999999 5433 6789999999999999999999999999988 7
Q ss_pred CCcchh--hHHHHHHHHHHHcCccc
Q 033650 91 REQRYH--GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 91 ~~~~yh--Grv~a~~~~lre~Gl~~ 113 (114)
|+++|| |||+||+|++||+||+|
T Consensus 106 gg~~yh~GgRV~Ala~gAre~GL~f 130 (187)
T 1vq8_N 106 GLNSPTPGSKVFAIQEGAIDAGLDI 130 (187)
T ss_dssp TTSCCCTTCHHHHHHHHHHHTTCBC
T ss_pred CCceeccchHHHHHHHHhhcCCEec
Confidence 999999 99999999999999997
No 7
>3j21_O 50S ribosomal protein L18P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.3e-34 Score=217.08 Aligned_cols=98 Identities=17% Similarity=0.093 Sum_probs=92.2
Q ss_pred CCCCcEEEEEEeCCceeeEEEE--CCCCeEEEEecchhHhh-hhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCC
Q 033650 15 PSEPYVLKMHLTNKYVSAQVVH--SPTATVASSASSQEKAL-RSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKR 91 (114)
Q Consensus 15 ~~~~~rL~V~~Snkhi~Aqvi~--~~~~~~l~saST~e~~~-k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~ 91 (114)
.+++|||+|++||+|||||||| +++|+||+||||.|+++ .+++.+++|++||+.||++||+||+++||++|+|| ||
T Consensus 29 ~~~kpRL~V~rSnkhIyAQIId~d~~g~~tLasAST~El~lk~g~~~~~~N~~AA~~vG~llA~Ral~kGI~~vvfD-rg 107 (203)
T 3j21_O 29 KSGKPRLVVRKSLNHHIAQIIVYDPKGDRTLVSAHTRELIRDFGWKGHCGNTPSAYLLGLLIGYKAKQAGIEEAILD-IG 107 (203)
T ss_dssp TTCCCEEEEEECSSCEEEEEEECCTTSCEEEEEECSTTTSSSSSCCSCTTSHHHHHHHHHHSSSSTTSSCCCCCEEE-CC
T ss_pred hcCCCEEEEEEeCCeEEEEEEEecCCCCeEEEEEEccchhhhhcccCCCCcHHHHHHHHHHHHHHHHhCCCCEEEEe-cC
Confidence 4679999999999999999998 88899999999999996 47778899999999999999999999999999998 79
Q ss_pred Ccch--hhHHHHHHHHHHHcCccc
Q 033650 92 EQRY--HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 92 ~~~y--hGrv~a~~~~lre~Gl~~ 113 (114)
+++| ||||+||+|++||+||+|
T Consensus 108 g~~y~~hgRV~Ala~gAre~GL~i 131 (203)
T 3j21_O 108 LHPPVRGSSVFAVLKGAVDAGLNV 131 (203)
T ss_dssp SSCCCTTSHHHHHHHHHHHHTCCC
T ss_pred cceeccCcchhhhhhhcccCCeec
Confidence 9999 899999999999999987
No 8
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.96 E-value=3.8e-29 Score=196.56 Aligned_cols=97 Identities=19% Similarity=0.174 Sum_probs=89.8
Q ss_pred CCCcEEEEEEeCCceeeEEEECC--CCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhC-------------
Q 033650 16 SEPYVLKMHLTNKYVSAQVVHSP--TATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK------------- 80 (114)
Q Consensus 16 ~~~~rL~V~~Snkhi~Aqvi~~~--~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~------------- 80 (114)
+.+|||+|++||+|||||||++. +|+||+||||.|+.-.++..+++|.+||+.||.+||+||+++
T Consensus 46 t~kpRLvVrrSNk~I~aQII~~~~~gd~tLasAsS~El~kyg~k~g~tN~aAAy~tGlLlArRal~k~~ld~~y~G~~e~ 125 (297)
T 2zkr_n 46 TPKYRMIVRVTNRDIICQIAYARIEGDMIVCARYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEV 125 (297)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSSSCEEEEEEEGGGGGGTCCCSCSSSHHHHHHHHHHHHHHHHCCCSCCCCCSSCCSS
T ss_pred CCCceEEEEEecCcEEEEEEeccCCCCEEEEEeecCcccccccccCCCcHHHHHHHHHHHHHHHHHhhccchhhcCcccc
Confidence 45699999999999999999977 999999999999983355557899999999999999999999
Q ss_pred --------------CCCEEEEecCCCcch--hhHHHHHHHHHHHcCccc
Q 033650 81 --------------DIPAVSVFLKREQRY--HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 81 --------------gI~~v~~d~r~~~~y--hGrv~a~~~~lre~Gl~~ 113 (114)
||.+++|| +|+++| ||||+|+++|++|+||+|
T Consensus 126 ~g~~~~ve~~~~~~gi~~vvfD-rGl~ryttggRVfa~akGArDgGL~~ 173 (297)
T 2zkr_n 126 TGDEYNVESIDGQPGAFTCYLD-AGLARTTTGNKVFGALKGAVDGGLSI 173 (297)
T ss_dssp SSCCCCCSSSCSSSCCCBEEEE-CTTSCCCTTCHHHHHHHHHHHTTCBC
T ss_pred ccccccccccccCCCceEEEEe-cCCcccCCCchHHHHHHHHHhcCccc
Confidence 99999999 799999 999999999999999987
No 9
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_D 4b6a_D 3izc_Q 3izs_Q 3o58_E 3o5h_E 3jyw_E 1s1i_E
Probab=99.94 E-value=4e-27 Score=185.21 Aligned_cols=97 Identities=25% Similarity=0.248 Sum_probs=90.2
Q ss_pred CCCcEEEEEEeCCceeeEEEEC--CCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhC--------CCCE-
Q 033650 16 SEPYVLKMHLTNKYVSAQVVHS--PTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK--------DIPA- 84 (114)
Q Consensus 16 ~~~~rL~V~~Snkhi~Aqvi~~--~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~--------gI~~- 84 (114)
+.+|||+|++||+||||||||+ ++|+||+||||.|++..++...++|++||+.||.+||+||+++ |+++
T Consensus 46 t~kpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~k~g~k~~~~N~~AAy~vG~LiAeRAl~k~~ld~~y~G~~e~ 125 (297)
T 3u5e_D 46 TPKYRLVVRFTNKDIICQIISSTITGDVVLAAAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQKLGLDETYKGVEEV 125 (297)
T ss_dssp CCCCEEEEEEETTEEEEEEEECCTTCCEEEEEEEGGGGGGGTCCSCTTSHHHHHHHHHHHHHHHHHHTSTTSSCCCCSSC
T ss_pred CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeecchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCcccccCcccc
Confidence 4699999999999999999998 6899999999999997777667889999999999999999999 9988
Q ss_pred ------------------EEEecCCCcch--hhHHHHHHHHHHHcCccc
Q 033650 85 ------------------VSVFLKREQRY--HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 85 ------------------v~~d~r~~~~y--hGrv~a~~~~lre~Gl~~ 113 (114)
++|| .|+.++ |+||+++++|++|+||++
T Consensus 126 ~g~~~~ve~~~~~~~~f~~~LD-vGl~rtttG~RVfaalKGA~DgGL~I 173 (297)
T 3u5e_D 126 EGEYELTEAVEDGPRPFKVFLD-IGLQRTTTGARVFGALKGASDGGLYV 173 (297)
T ss_dssp CCCCCCCCCCSSSCCCCBCEEE-CTTCCCCTTCSHHHHHHHHHHHTCBC
T ss_pred ccceeccccccCCCCceeEEEe-cCCCccCccceehhhhhcccccCccc
Confidence 8889 699998 999999999999999975
No 10
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_M 4a1c_M 4a1e_M
Probab=99.94 E-value=4.3e-27 Score=185.21 Aligned_cols=97 Identities=24% Similarity=0.208 Sum_probs=90.1
Q ss_pred CCCcEEEEEEeCCceeeEEEEC--CCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhC--------CCC--
Q 033650 16 SEPYVLKMHLTNKYVSAQVVHS--PTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK--------DIP-- 83 (114)
Q Consensus 16 ~~~~rL~V~~Snkhi~Aqvi~~--~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~--------gI~-- 83 (114)
+.+|||+|++||+||||||||+ ++|+||+||||.|++..++...++|++||+.||.+||+||+++ |++
T Consensus 46 spkpRLvV~rSNrhIyAQIIdd~~~Gd~tLaSASS~El~~~g~k~~~~N~~AAy~vG~LiAeRAl~k~~~d~~y~G~~e~ 125 (301)
T 4a17_M 46 TPKYRLVARATNTRIIAQIVYATLKCDRVLCAADSYELKRFGVSTGLASYAAAYATGLLLARRLLKQIGLDTVYAGQTKV 125 (301)
T ss_dssp CCCEEEEEEECSSCEEEEEEEECSSCEEEEEEEETTHHHHTTCCSCTTSHHHHHHHHHHHHHHHHHHHTCTTTCCCCSSC
T ss_pred CCCceEEEEEcCCeEEEEEeecCCCCCEEEEEEeeccchhccccCCCCcHHHHHHHHHHHHHHHHHhcCCcccccCcccc
Confidence 5589999999999999999998 6889999999999998887778899999999999999999999 999
Q ss_pred -----------------EEEEecCCCcch--hhHHHHHHHHHHHcCccc
Q 033650 84 -----------------AVSVFLKREQRY--HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 84 -----------------~v~~d~r~~~~y--hGrv~a~~~~lre~Gl~~ 113 (114)
.++|| .|+.++ |+||+++++|++|+||++
T Consensus 126 ~g~~~~ve~~~~~~~~f~~~LD-~Gl~rtt~G~RVfaalKGA~DgGL~I 173 (301)
T 4a17_M 126 DGAYFNVDEDQKEKKPFKAILD-AGLVRTTTGNRVFGVLKGACDGGINI 173 (301)
T ss_dssp CCSCCCGGGTCCSSCCCBCEEE-CTTSCCCSSCHHHHHHHHHHHTTCBC
T ss_pred ccceeecccccCCCCceEEEEe-cCCcccCcccchhhhhhcccccCccc
Confidence 58889 699998 999999999999999975
No 11
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Q
Probab=99.89 E-value=1.4e-23 Score=165.35 Aligned_cols=94 Identities=23% Similarity=0.180 Sum_probs=86.3
Q ss_pred CCCcEEEEEEeCCceeeEEEEC--CCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhC--------CCCE-
Q 033650 16 SEPYVLKMHLTNKYVSAQVVHS--PTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLK--------DIPA- 84 (114)
Q Consensus 16 ~~~~rL~V~~Snkhi~Aqvi~~--~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~--------gI~~- 84 (114)
+.+|||+ ||+|||||||++ ++++||+||||.|+..++|..+++|.+||+.||.+||+||+++ |+++
T Consensus 50 tpKpRLV---SNrhIyaQII~~~i~GD~tLaSAsS~EL~kyG~k~g~~N~aAAy~tGlLiA~RAl~k~~ld~~y~G~~e~ 126 (304)
T 3iz5_Q 50 TPKYRFV---TNKDITAQIVYATIAGDIVMAAAYSHELPRYGLEVGLTNYAAAYCTGLLLARRVLTLRGLDQEYEGNVEA 126 (304)
T ss_dssp CCCSSSS---CSSCCEEEEEEEETTEEEEEEEEETTTGGGGSCCSCTTSHHHHHHHHHHHHHHHHTTCSSCCCCCSSSCC
T ss_pred CCCceee---cCCcEEEEEEecCCCCCEEEEEEecCchhhcccCCCCCcHHHHHHHHHHHHHHHHHhhCCccccCCcccc
Confidence 3468998 999999999997 5779999999999998887668899999999999999999999 9998
Q ss_pred -----------------EEEecCCCcchh--hHHHHHHHHHHHcCccc
Q 033650 85 -----------------VSVFLKREQRYH--GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 85 -----------------v~~d~r~~~~yh--Grv~a~~~~lre~Gl~~ 113 (114)
++|| .|+.+++ +||+++++|++|+||++
T Consensus 127 ~g~~~~ve~~~~~~~f~~~LD-iGL~rtttG~RVfaalKGA~DgGL~I 173 (304)
T 3iz5_Q 127 TGEDYYVEPADERRPFRALLD-VGLIRTTTGNRVFGALKGALDGGLDI 173 (304)
T ss_dssp CSCCCSSCCSSCSCCCSCEEE-CTTCCCCSSCHHHHHHHHHHTTTCCC
T ss_pred ccceecccccCCCCCceEEEe-cCCcccccCceeEEeeccccccCccc
Confidence 8899 6999998 99999999999999975
No 12
>2vqe_K 30S ribosomal protein S11, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.55.4.1 PDB: 1gix_N* 1hnw_K* 1hnx_K* 1hnz_K* 1hr0_K 1ibk_K* 1ibl_K* 1ibm_K 1j5e_K 1jgo_N* 1jgp_N* 1jgq_N* 1ml5_N* 1n32_K* 1n33_K* 1n34_K 1n36_K 1xmo_K* 1xmq_K* 1xnq_K* ...
Probab=98.11 E-value=3e-05 Score=54.43 Aligned_cols=92 Identities=12% Similarity=0.159 Sum_probs=73.6
Q ss_pred CCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcch
Q 033650 16 SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRY 95 (114)
Q Consensus 16 ~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~y 95 (114)
-....+.|+-|-+.+..+|.| .+|.++..+|+-...+++.. .+.--||..+++.++++|+|.||..+.+..+|.-
T Consensus 14 ~~~gi~hI~as~NNTivtiTd-~~G~~~~~~SaG~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~V~vkG~G-- 88 (129)
T 2vqe_K 14 VASGRAYIHASYNNTIVTITD-PDGNPITWSSGGVIGYKGSR--KGTPYAAQLAALDAAKKAMAYGMQSVDVIVRGTG-- 88 (129)
T ss_dssp CSEEEEEEEECSSCEEEEEEC-TTSCEEEECCTTTTTCCSGG--GGSHHHHHHHHHHHHHHHHTTTCCEEEEEEESCC--
T ss_pred ccceEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEcCCC--cCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCC--
Confidence 445889999999999999998 55677788888766676542 4678899999999999999999999887776531
Q ss_pred hhHHHHHHHHHHHcCccc
Q 033650 96 HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 96 hGrv~a~~~~lre~Gl~~ 113 (114)
-|| ++++.+|...||++
T Consensus 89 ~Gr-e~airaL~~~Gl~I 105 (129)
T 2vqe_K 89 AGR-EQAIRALQASGLQV 105 (129)
T ss_dssp TTH-HHHHHHHHTSSSEE
T ss_pred CCH-HHHHHHHHHCCCEE
Confidence 244 57788999899875
No 13
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Probab=97.95 E-value=0.0001 Score=53.07 Aligned_cols=98 Identities=13% Similarity=0.055 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC
Q 033650 13 YQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKRE 92 (114)
Q Consensus 13 ~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~ 92 (114)
.+......+.|+-|-+.+...|.|..+..++.++|. ...+++. ...+.--||...++.+|++|++.||+.+.+..+|.
T Consensus 23 ~~~~~~gi~hI~asfNNTiVtiTD~~G~~~~~~ssg-g~~~k~~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~vkG~ 100 (151)
T 2xzm_K 23 ANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTG-GMKVKAD-REESSPYAAMQAAIDVVNRCKELKINALHIKLRAK 100 (151)
T ss_dssp TTCCCEEEEEEEBCSSCBCCEEECTTCCSEEEECCH-HHHCSSG-GGGSCHHHHHHHHHHHHHHHHHHTCCEEEEEEECC
T ss_pred CCCeeeeEEEEEccCCCEEEEEECCCCCEEEEEecC-cceEeCC-CCcCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEcC
Confidence 444556889999999999999998766666655443 3333321 12456788999999999999999999998877642
Q ss_pred --cc---h-hhHHHHHHHHHHHcCccc
Q 033650 93 --QR---Y-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 93 --~~---y-hGrv~a~~~~lre~Gl~~ 113 (114)
.+ + -|| ++++.+|..+||++
T Consensus 101 gg~~~kgpG~Gr-esairaL~~~GlkI 126 (151)
T 2xzm_K 101 GGVETKQPGPGA-QSALRALARSGMKI 126 (151)
T ss_dssp CTTSCCSCCSHH-HHHHHHHHHTSCEE
T ss_pred CCCCccCCCccH-HHHHHHHHHCCCEE
Confidence 21 2 244 67888898999976
No 14
>3r8n_K 30S ribosomal protein S11; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_K 3fih_K* 3iy8_K 3j18_K* 2wwl_K 3oar_K 3oaq_K 3ofb_K 3ofa_K 3ofp_K 3ofx_K 3ofy_K 3ofo_K 3r8o_K 4a2i_K 4gd1_K 4gd2_K 3i1m_K 1vs7_K* 3e1a_C ...
Probab=97.85 E-value=7.1e-05 Score=51.71 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=67.3
Q ss_pred EEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHH
Q 033650 20 VLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKV 99 (114)
Q Consensus 20 rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv 99 (114)
.+.|+-|-+.+..+|.| .+|.+++.+|+-...+++.. .+.-.||...++.++++|+|.||+.+.+..+|.-. | -
T Consensus 8 i~hI~as~NNTivtiTD-~~G~~i~~~S~G~~gfKg~r--k~tp~AA~~aa~~~~~~~~~~Gi~~v~v~vkG~G~--G-r 81 (117)
T 3r8n_K 8 VAHIHASFNNTIVTITD-RQGNALGWATAGGSGFRGSR--KSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGP--G-R 81 (117)
T ss_dssp EEEEEECSSCEEEEEEC-TTSCCSEEEETGGGSCCGGG--GSSHHHHHHHHHHHHHHHTTSCCCEEEEEEECSSS--S-T
T ss_pred EEEEEcccCCEEEEEEc-CCCCEEEEEcCCccccCCCc--cCCHHHHHHHHHHHHHHHHHhCCcEEEEEEeCCCc--c-H
Confidence 56788899999999997 45567788887666676543 45678999999999999999999998877765311 2 3
Q ss_pred HHHHHHHHHcCccc
Q 033650 100 KAIIDSLREAGVKL 113 (114)
Q Consensus 100 ~a~~~~lre~Gl~~ 113 (114)
++++.+|...|+++
T Consensus 82 ~~airaL~~~Gl~I 95 (117)
T 3r8n_K 82 ESTIRALNAAGFRI 95 (117)
T ss_dssp THHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCEE
Confidence 45667777889875
No 15
>3j20_M 30S ribosomal protein S11P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.83 E-value=0.00024 Score=50.38 Aligned_cols=94 Identities=18% Similarity=0.100 Sum_probs=71.2
Q ss_pred CCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC--cc
Q 033650 17 EPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKRE--QR 94 (114)
Q Consensus 17 ~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~--~~ 94 (114)
....+.|+-|-+.+...|.|..+..+|+.+|.-..-+++ ...+.--||...++.++++|++.||+.+.+..+|. .+
T Consensus 13 ~~gi~hI~asfNNTivtiTD~~G~~~i~~~S~G~~gfkg--~~ksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~gg~~ 90 (137)
T 3j20_M 13 KWGIAHIYSSFNNTIIHITDITGAETISRWSGGMVVKAD--RDEPSPYAAMLAARRAAEEALEKGIVGVHIRVRAPGGSK 90 (137)
T ss_dssp EEEEEEEEECSSCEEEEEEESSSCSEEEEEEGGGTCSCT--TTSSSHHHHHHHHHHHHHHHHHHTEEEEEEEEECCCSSS
T ss_pred cceEEEEEcCCCCEEEEEEcCCCCEEEEEEccceeeecC--CccCCHHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCCC
Confidence 456788999999999999996665788877776555554 23456779999999999999999999998877662 21
Q ss_pred ---h-hhHHHHHHHHHHHcCccc
Q 033650 95 ---Y-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 95 ---y-hGrv~a~~~~lre~Gl~~ 113 (114)
+ -|| ++++.+|...||++
T Consensus 91 ~~~pG~Gr-esairaL~~~Gl~I 112 (137)
T 3j20_M 91 SKTPGPGA-QAAIRALARAGLKI 112 (137)
T ss_dssp CCSCCTHH-HHHHHHHHHHTCEE
T ss_pred CcCCCCcH-HHHHHHHHhCCCEE
Confidence 2 244 55577888889876
No 16
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=97.77 E-value=4.8e-05 Score=54.15 Aligned_cols=91 Identities=19% Similarity=0.183 Sum_probs=72.3
Q ss_pred CCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchh
Q 033650 17 EPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYH 96 (114)
Q Consensus 17 ~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yh 96 (114)
..+.+.|+-|-+.+...|.| .+|.++..+|+-...+++. ..+.--||..+++.++++|+|.||+.+.+..+|.- -
T Consensus 28 ~~gi~hI~as~NNTivtiTD-~~G~~i~~~SaG~~GfKg~--rksTp~AA~~aa~~~~~~a~e~Gi~~v~V~vkG~G--~ 102 (140)
T 3bbn_K 28 PKGVIHVQASFNNTIVTVTD-VRGRVVSWASAGTCGFRGT--KRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPG--L 102 (140)
T ss_dssp CCCEEEEEECSSCEEEEEEC-SSSCEEEEEETTTSSCCTT--SCSSHHHHHHHHTSGGGTSTTTCCCEEEEEEESCS--T
T ss_pred eeeEEEEEecCCCEEEEEEc-CCCCEEEEEeccceeEccc--ccCCHHHHHHHHHHHHHHHHHhCCeEEEEEEECCC--C
Confidence 35889999999999999998 5567778888866667763 35678899999999999999999999887776531 1
Q ss_pred hHHHHHHHHHHHcCccc
Q 033650 97 GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 97 Grv~a~~~~lre~Gl~~ 113 (114)
|| ++++.+|...||++
T Consensus 103 GR-eaairaL~~~Gl~I 118 (140)
T 3bbn_K 103 GR-DAALRAIRRSGILL 118 (140)
T ss_dssp TS-SHHHHHHHTTTCEE
T ss_pred cH-HHHHHHHHHCCCEE
Confidence 33 46788888889875
No 17
>3u5c_O RP59A, 40S ribosomal protein S14-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_K 3o30_H 3o2z_H 3u5g_O 1s1h_K 3jyv_K*
Probab=97.38 E-value=0.00036 Score=49.41 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=68.0
Q ss_pred CccCCCCCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033650 10 LKTYQPSEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFL 89 (114)
Q Consensus 10 ~~~~~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~ 89 (114)
|.....-....+.|+-|-+.+...|.|..+..+ ...|+-...+++. ...+.--||...++.++++|+|.||+.+.+..
T Consensus 6 ~~~~~~~~~gi~hI~asfNNTivtvTD~~G~~~-~~~ssG~~gfKg~-r~ksTpyAAq~aa~~~a~~a~e~Gi~~v~V~v 83 (137)
T 3u5c_O 6 QARDNSQVFGVARIYASFNDTFVHVTDLSGKET-IARVTGGMKVKAD-RDESSPYAAMLAAQDVAAKCKEVGITAVHVKI 83 (137)
T ss_dssp -----CCCEEECCEEEETTEEEECCEETTSSSC-CCCCBTTTTSCCS-TTTTCHHHHHHHHHHHHHHHHHHTCCEEECEE
T ss_pred eeccCceeeEEEEEEccCCCEEEEEEcCCCCEE-EEEeCCCcEEeCC-cccCCHHHHHHHHHHHHHHHHHcCCeEEEEEE
Confidence 334444555667899999999999998655444 5555554455542 11356778999999999999999999988776
Q ss_pred CC--Ccch----hhHHHHHHHHHHHcCccc
Q 033650 90 KR--EQRY----HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 90 r~--~~~y----hGrv~a~~~~lre~Gl~~ 113 (114)
|+ +.+. -| -++++.+|..+||++
T Consensus 84 ra~gg~~~kgpG~G-r~sairaL~~~Gl~I 112 (137)
T 3u5c_O 84 RATGGTRTKTPGPG-GQAALRALARSGLRI 112 (137)
T ss_dssp ECSCTTSCCSCCGG-GHHHHHHHHTTTCEE
T ss_pred eccCCCcccCCCcc-hHHHHHHHHhCCCEE
Confidence 52 2221 23 456677888889876
No 18
>4fnq_A Alpha-galactosidase AGAB; glycoside hydrolase, hydrolase; 1.80A {Geobacillus stearothermophilus} PDB: 4fnr_A 4fnu_A* 4fnt_A* 4fns_A* 4fnp_A*
Probab=80.68 E-value=1.8 Score=37.20 Aligned_cols=40 Identities=8% Similarity=0.077 Sum_probs=32.5
Q ss_pred HHHHHhhCCCCEEEEecCCC------------------cchhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKRE------------------QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~------------------~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+|++|++.|++-+++|| |= .++-+-+++++|.+++.|++|
T Consensus 351 ~ad~aa~lG~e~fviDD-GWf~~r~~d~~~lGdW~~d~~kFP~Glk~Lad~vh~~Gmkf 408 (729)
T 4fnq_A 351 IAKTEAELGIELFVLDD-GWFGKRDDDRRSLGDWIVNRRKLPNGLDGLAKQVNELGMQF 408 (729)
T ss_dssp HHHHHHHHTCCEEEECS-CCBTTCCSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCccEEEEcc-eeecCCCCCcccCCcEEEChhhcCccHHHHHHHHHHCCCEE
Confidence 67889999999999997 31 123345999999999999987
No 19
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=80.17 E-value=2.3 Score=27.32 Aligned_cols=34 Identities=21% Similarity=0.377 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHH
Q 033650 63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLRE 108 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre 108 (114)
-.++|.+|..+|+..++.|++.+ | +.+|++|+++
T Consensus 30 ~K~SYaIG~~mG~~L~~~g~~~l--D----------~dav~~Gl~D 63 (88)
T 3b09_A 30 QHASYGVGRQMGEQLAANSFEGI--D----------IPAVQAGLAD 63 (88)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTC--C----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcccc--C----------HHHHHHHHHH
Confidence 35899999999999999988764 5 4566666665
No 20
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=74.25 E-value=1.1 Score=32.79 Aligned_cols=46 Identities=13% Similarity=0.251 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
+|++.++.|++.|++-|.+.......+.+.+..+.+.+++.|+..+
T Consensus 70 tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl~~i 115 (219)
T 2h6r_A 70 TGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGLETI 115 (219)
T ss_dssp TTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTCEEE
T ss_pred cCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCCeEE
Confidence 6777789999999999988642223556779999999999999753
No 21
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=74.15 E-value=9.8 Score=27.23 Aligned_cols=46 Identities=15% Similarity=0.045 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.|- .+.. ...-|...|.+++++.|+.+
T Consensus 112 ~~~g~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 160 (288)
T 3gv0_A 112 EAYAYEAVERLAQCGRKRIAVI-VPPSRFSFHDHARKGFNRGIRDFGLTE 160 (288)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE-CCCTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCCCCeEEEE-cCCcccchHHHHHHHHHHHHHHcCCCc
Confidence 4456677777778899998766 2332 23469999999999999864
No 22
>1byk_A Protein (trehalose operon repressor); LACI family, phosphate binding, protein structure, trehalose repressor, gene regulation; HET: T6P; 2.50A {Escherichia coli} SCOP: c.93.1.1
Probab=73.27 E-value=10 Score=26.54 Aligned_cols=44 Identities=14% Similarity=0.061 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCC----cchhhHHHHHHHHHHHcCcc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKRE----QRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~----~~yhGrv~a~~~~lre~Gl~ 112 (114)
..|+.+++.+.+.|..++.|- .+. .....|...|.+++++.|+.
T Consensus 101 ~~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~~R~~gf~~al~~~g~~ 148 (255)
T 1byk_A 101 GAIKILMQRLYDQGHRNISYL-GVPHSDVTTGKRRHEAYLAFCKAHKLH 148 (255)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE-CCCTTSTTTTHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcCCCeEEEE-ecCCCCcccHHHHHHHHHHHHHHcCCC
Confidence 345566666666799988765 232 12357999999999999985
No 23
>3gyb_A Transcriptional regulators (LACI-family transcriptional regulatory protein); protein structure initiative II(PSI II), nysgxrc; 1.60A {Corynebacterium glutamicum}
Probab=72.16 E-value=8.3 Score=27.31 Aligned_cols=46 Identities=7% Similarity=0.091 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcc-hhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQR-YHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~-yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.+- .+... ...|...|.+++++.|+.+
T Consensus 103 ~~~g~~a~~~L~~~G~~~i~~i-~~~~~~~~~R~~gf~~~l~~~~~~~ 149 (280)
T 3gyb_A 103 FRGAEIATKHLIDLGHTHIAHL-RVGSGAGLRRFESFEATMRAHGLEP 149 (280)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEE-CCSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEE-eCCCchHHHHHHHHHHHHHHcCcCC
Confidence 3445666666666799988766 23322 4579999999999999864
No 24
>3tev_A Glycosyl hyrolase, family 3; PSI-biology, midwest center for structural genomics, structu genomic, MCSG, hydrolase; 2.30A {Deinococcus radiodurans}
Probab=72.10 E-value=2.3 Score=33.69 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=38.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCEE---EEe----cCCC---cc-hh-------hHHHHHHHHHHHcCc
Q 033650 58 GCTRDVAAASKIGKLLGERLLLKDIPAV---SVF----LKRE---QR-YH-------GKVKAIIDSLREAGV 111 (114)
Q Consensus 58 ~~~~n~~AA~~vG~~la~ra~e~gI~~v---~~d----~r~~---~~-yh-------Grv~a~~~~lre~Gl 111 (114)
..+.|.+.++.+|+.+|+.+++.||+-. ++| ++++ .+ |+ --..|+++|++++|+
T Consensus 102 aat~d~~l~~~~g~~~a~E~ra~Gi~~~~aPv~Dv~r~p~~~rig~RsfgeDP~lv~~~a~a~v~Glq~~gV 173 (351)
T 3tev_A 102 GAADDQQLTEDVNAALARQLRSVGINWNFTPVLDINVNPANPVIGDRAYGSDAARVTRHGRAALAGHTREGV 173 (351)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCCSSGGGSSCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCCEeccceeEeccCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 4467999999999999999999999963 123 2222 11 21 145688999999987
No 25
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=71.47 E-value=9.9 Score=26.74 Aligned_cols=46 Identities=11% Similarity=0.135 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.+- .+.. ....|...|.+++.+.|+.+
T Consensus 105 ~~~~~~a~~~L~~~G~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 153 (275)
T 3d8u_A 105 FEVGKACTRHLIEQGFKNVGFI-GARGNHSTLQRQLHGWQSAMIENYLTP 153 (275)
T ss_dssp HHHHHHHHHHHHTTTCCCEEEE-ECSCSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEE-cCCCCCchHHHHHHHHHHHHHHcCCCC
Confidence 3456666666777798887655 2322 23469999999999999863
No 26
>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}
Probab=71.10 E-value=11 Score=26.45 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc-------chh-hHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ-------RYH-GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~-------~yh-Grv~a~~~~lre~Gl~~ 113 (114)
..|+.+++.+.+.|..++.+-. +.. ... .|...|.+++++.|+++
T Consensus 100 ~~~~~a~~~L~~~G~~~i~~i~-~~~~~~~~~~~~~~~R~~gf~~~l~~~g~~~ 152 (276)
T 2h0a_A 100 LGGRLAGAYLARFPGPIFAIAV-EEEPDRAFRRTVFAERMAGFQEALKEAGRPF 152 (276)
T ss_dssp HHHHHHHHHHTTSSSCEEEEEE-CCSCCC---CCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCCeEEEEe-cCcccccccchhHHHHHHHHHHHHHHcCCCC
Confidence 3455566666677999886542 322 235 78999999999999864
No 27
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=70.78 E-value=10 Score=27.06 Aligned_cols=46 Identities=11% Similarity=0.175 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.|- .+.. ....|...|.+++++.|+.+
T Consensus 110 ~~~g~~a~~~L~~~G~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 158 (291)
T 3egc_A 110 VRGARTAVEYLIARGHTRIGAI-VGSAGLMTSRERLKGFRAAMSAAGLPV 158 (291)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEE-CSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEE-eCCCCCcCHHHHHHHHHHHHHHcCCCC
Confidence 3445666666667799988766 2332 34569999999999999864
No 28
>3qi7_A Putative transcriptional regulator; periplasmic binding protein-like, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.86A {Clostridium difficile}
Probab=70.54 E-value=6.1 Score=31.60 Aligned_cols=46 Identities=17% Similarity=0.270 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcc-----hhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQR-----YHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~-----yhGrv~a~~~~lre~Gl~~ 113 (114)
+.=|+.+++.+.+.|.+++.+- .+... ..-|.+.+.++|.|+||+|
T Consensus 141 ~~Ggy~A~~~Li~~Ghk~Ia~I-sgp~~~~~~~~~~R~~Gyk~Al~e~Gi~~ 191 (371)
T 3qi7_A 141 EERGKVLAERSKEMGAKAFIHY-ASTDDLKDVNIAKRLEMIKETCKNIGLPF 191 (371)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEE-EETTGGGSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-eccccccchhHHHHHHHHHHHHHHcCCCc
Confidence 3457788899999999998755 34321 2238999999999999986
No 29
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=70.48 E-value=11 Score=26.85 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.+-. +.. ....|...|.+++.+.|+.+
T Consensus 116 ~~~g~~a~~~L~~~G~~~i~~i~-~~~~~~~~~~R~~gf~~~l~~~g~~~ 164 (292)
T 3k4h_A 116 YTAAREVAEYLISLGHKQIAFIG-GGSDLLVTRDRLAGMSDALKLADIVL 164 (292)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEE-SCTTBHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCceEEEEe-CcccchhHHHHHHHHHHHHHHcCCCC
Confidence 44566666677778999887652 322 23469999999999999864
No 30
>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}
Probab=70.19 E-value=9.5 Score=27.45 Aligned_cols=46 Identities=13% Similarity=0.041 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.|-. +.. ....|...|.+++++.|+.+
T Consensus 116 ~~~g~~a~~~L~~~G~~~I~~i~-~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (301)
T 3miz_A 116 YQGARDLTRYLLERGHRRIGYIR-LNPILLGAELRLDAFRRTTSEFGLTE 164 (301)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEE-CCTTSHHHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHcCCCeEEEEe-cCccchhHHHHHHHHHHHHHHcCCCC
Confidence 44566666777778999886652 322 23479999999999999864
No 31
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=70.14 E-value=11 Score=26.81 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
..|+.+++.+.+.|..++.+- .+.. ....|...|.+++.++|+++
T Consensus 112 ~~~~~~~~~L~~~G~~~i~~i-~~~~~~~~~~~R~~g~~~~l~~~g~~~ 159 (289)
T 1dbq_A 112 EGGYMAGRYLIERGHREIGVI-PGPLERNTGAGRLAGFMKAMEEAMIKV 159 (289)
T ss_dssp HHHHHHHHHHHHTTCCSEEEE-CCC------CHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCeEEEE-ecCCccccHHHHHHHHHHHHHHCCCCC
Confidence 345666666666798888655 2321 23579999999999999864
No 32
>3g85_A Transcriptional regulator (LACI family); transcription regulator, PSI-II, structural genomics structure initiative; 1.84A {Clostridium acetobutylicum atcc 824}
Probab=69.29 E-value=9.7 Score=27.07 Aligned_cols=46 Identities=20% Similarity=0.321 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.|-. +.. ...-|...|.+++++.|+.+
T Consensus 112 ~~~~~~a~~~L~~~G~~~i~~i~-~~~~~~~~~~R~~gf~~~l~~~~~~~ 160 (289)
T 3g85_A 112 YKMGEKASLLFAKKRYKSAAAIL-TESLNDAMDNRNKGFIETCHKNGIKI 160 (289)
T ss_dssp HHHHHHHHHHHHHTTCCBCEEEE-CCCSSHHHHHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe-CCcccccHHHHHHHHHHHHHHcCCCC
Confidence 34566666667778988876652 322 23469999999999999864
No 33
>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}
Probab=69.02 E-value=13 Score=26.57 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCC---cchhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKRE---QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~---~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.+- .+. .....|...|.+++.+.|+++
T Consensus 110 ~~~g~~a~~~L~~~G~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 158 (290)
T 3clk_A 110 EDIGYQATNLLINEGHRQIGIA-GIDQYPYTGRKRLAGYKKALKEANIAI 158 (290)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEE-SCCCCTTTHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcCCCEEEEE-eCCCCCcchHHHHHHHHHHHHHcCCCC
Confidence 3456677777777899888665 232 123579999999999999864
No 34
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=68.93 E-value=11 Score=26.71 Aligned_cols=45 Identities=11% Similarity=0.126 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
..|+.+++.+.+.|..++.+- .+.. ....|...|.+++.+.|+++
T Consensus 125 ~~~~~a~~~l~~~G~~~I~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 172 (296)
T 3brq_A 125 QTSFNAVAELINAGHQEIAFL-TGSMDSPTSIERLAGYKDALAQHGIAL 172 (296)
T ss_dssp HHHHHHHHHHHHTTCCSEEEE-CCCTTCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHCCCceEEEE-cCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 345666666666798888665 2321 23568999999999999864
No 35
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=68.05 E-value=4.4 Score=27.12 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=25.8
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
+.+.|.++|+..+++. .|+. -..+++.++++||.++
T Consensus 74 ~v~e~~~~g~k~v~~~--~G~~----~~e~~~~a~~~Girvv 109 (122)
T 3ff4_A 74 EYNYILSLKPKRVIFN--PGTE----NEELEEILSENGIEPV 109 (122)
T ss_dssp GHHHHHHHCCSEEEEC--TTCC----CHHHHHHHHHTTCEEE
T ss_pred HHHHHHhcCCCEEEEC--CCCC----hHHHHHHHHHcCCeEE
Confidence 3456777899987655 3432 2588999999999864
No 36
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=67.78 E-value=11 Score=27.10 Aligned_cols=45 Identities=13% Similarity=0.043 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc----chhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ----RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~----~yhGrv~a~~~~lre~Gl~~ 113 (114)
..|+.+++.+.+.|..++.+- .+.. ....|...|.+++++.|+++
T Consensus 119 ~~g~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 167 (289)
T 2fep_A 119 QAIYDAVKLLVDKGHTDIAFV-SGPMAEPINRSKKLQGYKRALEEANLPF 167 (289)
T ss_dssp HHHHHHHHHHHHTTCSSEEEE-ESCTTSHHHHTTHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCeEEEE-eCCccccccHHHHHHHHHHHHHHcCCCC
Confidence 345556666666798888665 2332 13569999999999999864
No 37
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=67.43 E-value=12 Score=26.49 Aligned_cols=47 Identities=17% Similarity=0.146 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCCEEEEec-CCCcchhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFL-KREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~-r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.+-. ........|...|.++++++|+.+
T Consensus 122 ~~~~~~a~~~L~~~G~~~i~~i~~~~~~~~~~R~~gf~~~l~~~g~~~ 169 (298)
T 3tb6_A 122 VKGGMMAAEHLLSLGHTHMMGIFKADDTQGVKRMNGFIQAHRERELFP 169 (298)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEEESSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCcEEEEcCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 44566666677777988875542 112234579999999999999864
No 38
>3cs3_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative; 2.40A {Enterococcus faecalis}
Probab=67.39 E-value=12 Score=26.52 Aligned_cols=46 Identities=9% Similarity=0.041 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.+- .+.. ....|...|.+++++.|+++
T Consensus 103 ~~~~~~a~~~L~~~G~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 151 (277)
T 3cs3_A 103 RGGATQAIEQFVNVGSKKVLLL-SGPEKGYDSQERLAVSTRELTRFGIPY 151 (277)
T ss_dssp HHHHHHHHHHHHHTTCSCEEEE-ECCTTSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHHcCCceEEEE-eCCccCccHHHHHHHHHHHHHHcCCCe
Confidence 3456666666667798887655 2321 23569999999999999864
No 39
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=66.91 E-value=12 Score=27.06 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.|-. +.. ....|...|.+++++.|+.+
T Consensus 116 ~~~g~~a~~~L~~~G~~~I~~i~-~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (303)
T 3kke_A 116 QKGGGIATEHLITLGHSRIAFIS-GTAIHDTAQRRKEGYLETLASAGLRS 164 (303)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE-SCSSCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe-CCCcCccHHHHHHHHHHHHHHcCCCC
Confidence 34566666666778999886652 322 24569999999999999864
No 40
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=66.60 E-value=16 Score=26.14 Aligned_cols=46 Identities=7% Similarity=0.000 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc--chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ--RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~--~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.|- .+.. ....|...|.+++++.|+.+
T Consensus 111 ~~~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~R~~Gf~~al~~~g~~~ 158 (289)
T 3k9c_A 111 VAGITLAVDHLTELGHRNIAHI-DGADAPGGADRRAGFLAAMDRHGLSA 158 (289)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEE-CCTTSTTHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHCCCCcEEEE-eCCCCccHHHHHHHHHHHHHHCCCCC
Confidence 3345556666666799988665 2322 34579999999999999874
No 41
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=66.51 E-value=11 Score=27.11 Aligned_cols=46 Identities=2% Similarity=0.050 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.|-. +.. ....|...|.++++++|+.+
T Consensus 116 ~~~~~~a~~~L~~~G~~~I~~i~-~~~~~~~~~~R~~Gf~~al~~~g~~~ 164 (295)
T 3hcw_A 116 ILASENLTRHVIEQGVDELIFIT-EKGNFEVSKDRIQGFETVASQFNLDY 164 (295)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEE-ESSCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcCCccEEEEc-CCccchhHHHHHHHHHHHHHHcCCCe
Confidence 34455666666667999986652 322 24569999999999999864
No 42
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=66.42 E-value=7.1 Score=26.30 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=26.6
Q ss_pred HHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 75 ERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 75 ~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
+.|.++|+..++++. +.. -..+++.+++.|+.++
T Consensus 87 ~~~~~~g~~~i~~~~-~~~-----~~~l~~~a~~~Gi~~i 120 (138)
T 1y81_A 87 KEAVEAGFKKLWFQP-GAE-----SEEIRRFLEKAGVEYS 120 (138)
T ss_dssp HHHHHTTCCEEEECT-TSC-----CHHHHHHHHHHTCEEE
T ss_pred HHHHHcCCCEEEEcC-ccH-----HHHHHHHHHHCCCEEE
Confidence 457789999998884 543 4788889999999874
No 43
>2qu7_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 2.30A {Staphylococcus saprophyticus subsp}
Probab=66.24 E-value=13 Score=26.38 Aligned_cols=45 Identities=11% Similarity=0.162 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCC--c-chhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKRE--Q-RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~--~-~yhGrv~a~~~~lre~Gl~~ 113 (114)
..|+.+++.+.+.|..++.+- .+. . ....|...|.+++++.|+++
T Consensus 108 ~~g~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 155 (288)
T 2qu7_A 108 EAAYIATKRVLESTCKEVGLL-LANPNISTTIGRKNGYNKAISEFDLNV 155 (288)
T ss_dssp HHHHHHHHHHHTSSCCCEEEE-ECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcCCCcEEEE-ecCCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 345566666667798887654 232 1 23569999999999999864
No 44
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=66.17 E-value=11 Score=26.87 Aligned_cols=45 Identities=7% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
..|+.+++.+.+.|..++.+- .+.. ....|...|.+++.+.|+++
T Consensus 110 ~~g~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 157 (285)
T 3c3k_A 110 AASEYVVDQLVKSGKKRIALI-NHDLAYQYAQHRESGYLNRLKFHGLDY 157 (285)
T ss_dssp HHHHHHHHHHHHTTCCCEEEE-ECCTTSHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHcCCCeEEEE-eCCCccccHHHHHHHHHHHHHHcCCCc
Confidence 345666666667798887655 2322 23568999999999999865
No 45
>2fb6_A Conserved hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.46A {Bacteroides thetaiotaomicron}
Probab=66.11 E-value=13 Score=24.50 Aligned_cols=52 Identities=8% Similarity=0.101 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHHHHhhCCC-CEEEEecCCCc----chhhHHHHHHHHHHHcCccc
Q 033650 62 DVAAASKIGKLLGERLLLKDI-PAVSVFLKREQ----RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~gI-~~v~~d~r~~~----~yhGrv~a~~~~lre~Gl~~ 113 (114)
|.+.+...+..+|..++++|- ++|.+.--|.- ....-++...+.+++.|+.+
T Consensus 18 d~~~~~~~al~~A~~a~~~G~~~eV~i~~~G~~v~L~~~~~~l~~~~~~~~~~Gv~~ 74 (117)
T 2fb6_A 18 NKDTVFNMLAMYALNSKNRGWWKHINIILWGASVKLVANDTQVQTEILEMLQSGITI 74 (117)
T ss_dssp CHHHHHHTHHHHHHHHHHHTSCSEEEEEECSHHHHHHHHCHHHHHHHHHHHHHTCEE
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCcEEEEEECCeeeeccCCccHHHHHHHHHHcCCeE
Confidence 555555779999999999995 66644332321 12345889999999999875
No 46
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=65.75 E-value=12 Score=26.89 Aligned_cols=46 Identities=22% Similarity=0.263 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCC--CCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKD--IPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~g--I~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.| ..++.+- .+.. ....|...|.+++.+.|+++
T Consensus 113 ~~~g~~a~~~l~~~g~~~~~i~~i-~g~~~~~~~~~R~~Gf~~~l~~~g~~~ 163 (297)
T 3rot_A 113 LLAGKKLGEKALELTPSAKRALVL-NPQPGHIGLEKRAYGIKTILQDKGIFF 163 (297)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEE-ESCTTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHhcCCCceEEEE-eCCCCcHHHHHHHHHHHHHHHhcCCeE
Confidence 334555666666667 7777655 2322 23469999999999999875
No 47
>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A
Probab=65.50 E-value=13 Score=28.28 Aligned_cols=36 Identities=8% Similarity=0.013 Sum_probs=32.3
Q ss_pred HHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCc
Q 033650 76 RLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGV 111 (114)
Q Consensus 76 ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl 111 (114)
-+++.|++.+.|++=+|..+-.-++|+++++-++|+
T Consensus 153 ml~dmG~~SvKffPm~Gl~~l~E~~avAka~a~~g~ 188 (249)
T 3m0z_A 153 LLKDMGGSSIKYFPMGGLKHRAEFEAVAKACAAHDF 188 (249)
T ss_dssp HHHHTTCCEEEECCCTTTTTHHHHHHHHHHHHHTTC
T ss_pred HHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCc
Confidence 467899999999987888888889999999999997
No 48
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=65.35 E-value=12 Score=26.85 Aligned_cols=46 Identities=15% Similarity=0.196 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.|-. +.. ....|...|.+++++.|+.+
T Consensus 111 ~~~~~~a~~~L~~~G~~~I~~i~-~~~~~~~~~~R~~Gf~~al~~~g~~~ 159 (294)
T 3qk7_A 111 HAGASLAVKRLLELGHQRIAFVS-TDARISYVDQRLQGYVQTMSEAGLMP 159 (294)
T ss_dssp HHHHHHHHHHHHHTTCCCEEEEE-ESSCCHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCCCceEEEEe-CCcccchHHHHHHHHHHHHHHCCCCC
Confidence 44566666667778999886652 322 23469999999999999864
No 49
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=65.21 E-value=13 Score=26.83 Aligned_cols=46 Identities=4% Similarity=-0.070 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.|-. +.. ....|...|.+++++.|+.+
T Consensus 129 ~~~g~~a~~~L~~~G~~~I~~i~-~~~~~~~~~~R~~Gf~~~l~~~g~~~ 177 (305)
T 3huu_A 129 IDAAYQLTQYLYHLGHRHILFLQ-ESGHYAVTEDRSVGFKQYCDDVKISN 177 (305)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE-ESSCBHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEc-CCcccchhHHHHHHHHHHHHHcCCCc
Confidence 44566677777778998876552 322 23469999999999999875
No 50
>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*
Probab=64.33 E-value=13 Score=27.32 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc----chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ----RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~----~yhGrv~a~~~~lre~Gl~~ 113 (114)
+.-|+.+++.+.+.|..++.|- .+.. ....|...|.+++++.|+++
T Consensus 162 ~~~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 211 (332)
T 2hsg_A 162 EQAAFDAVQSLIDSGHKNIAFV-SGTLEEPINHAKKVKGYKRALTESGLPV 211 (332)
T ss_dssp HHHHHHHHHHHHTTTCSCEEEE-ESCTTSHHHHTTHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-eCCcccCccHHHHHHHHHHHHHHcCCCC
Confidence 3446666777777899988665 2332 13469999999999999864
No 51
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=64.16 E-value=14 Score=27.16 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+.-|+.+++.+.+.|..++.|- .+.. ....|...|.+++++.|+.+
T Consensus 166 ~~~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~al~~~g~~~ 214 (338)
T 3dbi_A 166 KQTSFNAVAELINAGHQEIAFL-TGSMDSPTSIERLAGYKDALAQHGIAL 214 (338)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEE-CCCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEE-eCCCCCccHHHHHHHHHHHHHHCCCCC
Confidence 4456667777778899998765 2321 23469999999999999864
No 52
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=63.87 E-value=5.3 Score=26.98 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=27.0
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
+++.|.++|+..+++.. |.. -..+++.++++|+.++
T Consensus 93 vv~~~~~~gi~~i~~~~-g~~-----~~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 93 YVEQAIKKGAKVVWFQY-NTY-----NREASKKADEAGLIIV 128 (144)
T ss_dssp HHHHHHHHTCSEEEECT-TCC-----CHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCCEEEECC-Cch-----HHHHHHHHHHcCCEEE
Confidence 34677788999887763 443 4778899999999764
No 53
>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}
Probab=63.57 E-value=16 Score=26.79 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
..|+.+++.+.+.|..++.|- .+.. ....|...|.++++++|+++
T Consensus 166 ~~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~al~~~g~~~ 213 (332)
T 2o20_A 166 LAAYQSTKKLIDSGNKKIAYI-MGSLKDVENTERMVGYQEALLEANIEF 213 (332)
T ss_dssp HHHHHHHHHHHHTTCSSEEEE-CSCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCeEEEE-eCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 345666666677799988665 2332 23468999999999999864
No 54
>3ctp_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; HET: XLF; 1.41A {Alkaliphilus metalliredigens}
Probab=62.63 E-value=15 Score=26.87 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=30.7
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
.|+.+++.+.+.|..++.|- .+.. ....|...|.++++++|+++
T Consensus 159 ~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~al~~~g~~~ 205 (330)
T 3ctp_A 159 GGRMAFDHLYEKGCRKILHI-KGPEVFEATELRYKGFLDGARAKDLEI 205 (330)
T ss_dssp HHHHHHHHHHHTTCCSEEEE-ECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCeEEEE-eCCccCccHHHHHHHHHHHHHHcCCCc
Confidence 35555566666798887655 2322 23579999999999999864
No 55
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=62.44 E-value=16 Score=26.10 Aligned_cols=45 Identities=16% Similarity=0.236 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
..|+.+++.+.+.|..++.+- .+.. ....|...|.+++.+.|+++
T Consensus 114 ~~g~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~al~~~g~~~ 161 (290)
T 2rgy_A 114 RGGELAAATLIEHGHRKLAVI-SGPFTASDNVERLDGFFDELARHGIAR 161 (290)
T ss_dssp HHHHHHHHHHHHTTCCSEEEE-ESCTTCHHHHHHHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHHHHCCCceEEEE-eCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 345556666666798887655 2321 23468999999999999864
No 56
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=62.39 E-value=14 Score=26.46 Aligned_cols=47 Identities=6% Similarity=0.210 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 62 DVAAASKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
|..+++..++.| .+.|..++.|- .+.. ....|...|.+++++.|+++
T Consensus 109 ~~~~g~~a~~~L----~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~~l~~~g~~~ 158 (287)
T 3bbl_A 109 GTAGTRQAVEYL----IGRGHRRIAIL-AWPEDSRVGNDRLQGYLEAMQTAQLPI 158 (287)
T ss_dssp HHHHHHHHHHHH----HHHTCCCEEEE-ECCTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred cHHHHHHHHHHH----HHCCCCeEEEE-eCCcccccHHHHHHHHHHHHHHcCCCC
Confidence 344555555444 44588887654 2321 23469999999999999864
No 57
>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...
Probab=62.39 E-value=15 Score=27.11 Aligned_cols=44 Identities=18% Similarity=0.303 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
.|+.+++.+.+.|..++.|- .+.. ....|...|.+++.++|+.+
T Consensus 164 ~~~~a~~~L~~~G~~~I~~i-~g~~~~~~~~~R~~Gf~~al~~~g~~~ 210 (340)
T 1qpz_A 164 GGYMAGRYLIERGHREIGVI-PGPLERNTGAGRLAGFMKAMEEAMIKV 210 (340)
T ss_dssp HHHHHHHHHHHHTCCCEEEE-CCCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHCCCCEEEEE-eCCCccccHHHHHHHHHHHHHHCCCCC
Confidence 34455555555698888665 2322 23569999999999999864
No 58
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=62.25 E-value=14 Score=27.50 Aligned_cols=46 Identities=13% Similarity=0.194 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---c-hhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---R-YHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~-yhGrv~a~~~~lre~Gl~~ 113 (114)
+.-|+.+++.+.+.|..++.|-. +.. . ...|...|.++++++|+.+
T Consensus 172 ~~~~~~a~~~L~~~G~r~I~~i~-~~~~~~~~~~~R~~Gf~~al~~~g~~~ 221 (355)
T 3e3m_A 172 ERAAYDMTNALLARGFRKIVFLG-EKDDDWTRGAARRAGFKRAMREAGLNP 221 (355)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE-ESSCTTSHHHHHHHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHHHHCCCCeEEEEc-cCcccChhHHHHHHHHHHHHHHCCcCC
Confidence 44566667777778999886552 321 2 3579999999999999864
No 59
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=61.87 E-value=12 Score=26.35 Aligned_cols=47 Identities=19% Similarity=0.174 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 66 ASKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 66 A~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
-+..|+.+++.+.+.|..++.|-. +.. ....|...|.+++.+.|+.+
T Consensus 106 ~~~~g~~a~~~L~~~G~~~i~~i~-~~~~~~~~~~R~~gf~~~l~~~~~~~ 155 (277)
T 3e61_A 106 HFKGGQLQAEVVRKGKGKNVLIVH-ENLLIDAFHQRVQGIKYILDQQRIDY 155 (277)
T ss_dssp HHHHHHHHHHHHHHTTCCSEEEEE-SCTTSHHHHHHHHHHHHHHHC---CE
T ss_pred hHHHHHHHHHHHHHCCCCeEEEEe-CCCCCccHHHHHHHHHHHHHHcCCCc
Confidence 445677788888888999887652 322 23469999999999999864
No 60
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=61.53 E-value=16 Score=26.46 Aligned_cols=46 Identities=15% Similarity=0.146 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcc-hhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQR-YHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~-yhGrv~a~~~~lre~Gl~~ 113 (114)
...++.+++-+.+.|.+++.+-. .... -..+...|.+++.+.|+++
T Consensus 120 ~~~~~~~~~~l~~~g~~~ia~i~-~~~~~~~~~~~~~~~~l~~~g~~v 166 (362)
T 3snr_A 120 PIMGKVLYEHMKKNNVKTVGYIG-YSDSYGDLWFNDLKKQGEAMGLKI 166 (362)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEe-cCchHHHHHHHHHHHHHHHcCCEE
Confidence 34566666677778999875542 2233 3568999999999999875
No 61
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=61.46 E-value=7.6 Score=33.30 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=39.1
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCEE---EE----ecCCCcc---hh------h-HHHHHHHHHHHcCc
Q 033650 58 GCTRDVAAASKIGKLLGERLLLKDIPAV---SV----FLKREQR---YH------G-KVKAIIDSLREAGV 111 (114)
Q Consensus 58 ~~~~n~~AA~~vG~~la~ra~e~gI~~v---~~----d~r~~~~---yh------G-rv~a~~~~lre~Gl 111 (114)
..+.|.+.++.+|+.+|+.+++.||+-. ++ |++++.. |+ | -..|+++|+++.|+
T Consensus 88 aat~d~~l~~~~g~~~a~E~~a~Gi~~~~aP~vdi~r~p~~gR~~e~fgeDP~l~~~~a~a~v~G~q~~gV 158 (721)
T 2x41_A 88 ASTWNRELLEEVGKAMGEEVREYGVDVLLAPAMNIHRNPLCGRNFEYYSEDPVLSGEMASSFVKGVQSQGV 158 (721)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHTTCSEECCCBCCCCCSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHTTTC
T ss_pred hhcCCHHHHHHHHHHHHHHHHHhCCCEEeeceECCCCCCCCCcccccCCCCHHHHHHHHHHHHHHhhhCCe
Confidence 4568999999999999999999999853 12 2233311 11 1 35789999999986
No 62
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=61.33 E-value=13 Score=27.71 Aligned_cols=47 Identities=15% Similarity=0.185 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhhCCCCEEEEec-C-------C-----------CcchhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFL-K-------R-----------EQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~-r-------~-----------~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+.-|+.+++.+.+.|..++.|-. + | ......|...|.+++.++|+.+
T Consensus 174 ~~~~~~a~~~L~~~G~r~I~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 239 (366)
T 3h5t_A 174 RKAIAPAAQALIDAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRGAMEVFIEAGIDP 239 (366)
T ss_dssp HHHTHHHHHHHHHTTCCSEEEEEECCSSSCCCEECCHHHHHTCCCTTHHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHHHHHHHCCCCcEEEEecccccccccCccccccccccccchHHHHHHHHHHHHHHCCCCC
Confidence 44566667777778998875541 0 1 1223569999999999999864
No 63
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=60.91 E-value=5.4 Score=27.05 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=25.9
Q ss_pred HHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 75 ERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 75 ~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
+.|.++|+..++++. +.. -..+++.+++.|+.++
T Consensus 88 ~~~~~~g~~~i~i~~-~~~-----~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 88 QEAIAIGAKTLWLQL-GVI-----NEQAAVLAREAGLSVV 121 (145)
T ss_dssp HHHHHHTCCEEECCT-TCC-----CHHHHHHHHTTTCEEE
T ss_pred HHHHHcCCCEEEEcC-ChH-----HHHHHHHHHHcCCEEE
Confidence 346678999998884 443 5788889999999874
No 64
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=60.63 E-value=16 Score=25.87 Aligned_cols=47 Identities=13% Similarity=0.179 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhCCC--CEEEEecC---CC---cchhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDI--PAVSVFLK---RE---QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI--~~v~~d~r---~~---~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|. .++.+-.. +. .....|...|.+++.+.|+.+
T Consensus 118 ~~~g~~a~~~l~~~g~~~~~i~~i~~~~~g~~~~~~~~~R~~gf~~~l~~~g~~~ 172 (304)
T 3gbv_A 118 HQSGYFAARMLMLLAVNDREIVIFRKIHEGVIGSNQQESREIGFRQYMQEHHPAC 172 (304)
T ss_dssp HHHHHHHHHHHHHHSTTCSEEEEEEEEBTTBCCCHHHHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEecccCCccchhHHHHHHHHHHHHHhhCCCc
Confidence 3445666666666676 77755410 21 234579999999999999864
No 65
>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}
Probab=60.52 E-value=6.5 Score=31.62 Aligned_cols=52 Identities=10% Similarity=0.151 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHH-----------------HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 61 RDVAAASKIGKL-----------------LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 61 ~n~~AA~~vG~~-----------------la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
.+.++|..+.++ +|..|.+.|++.+.+++ |..--..+++.+++.+++.|+.+
T Consensus 68 p~~~~a~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRINP-GNig~~~~~~~vv~~ak~~~~pi 136 (366)
T 3noy_A 68 PHKEDVEALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRINP-GNIGKEEIVREIVEEAKRRGVAV 136 (366)
T ss_dssp CSHHHHHHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEECH-HHHSCHHHHHHHHHHHHHHTCEE
T ss_pred CChHHHHHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEECC-cccCchhHHHHHHHHHHHcCCCE
Confidence 456777777765 78889999999999986 54333568999999999999854
No 66
>3uw2_A Phosphoglucomutase/phosphomannomutase family PROT; structural genomics, seattle structural genomics center for infectious disease; 1.95A {Burkholderia thailandensis}
Probab=60.22 E-value=28 Score=28.27 Aligned_cols=59 Identities=37% Similarity=0.504 Sum_probs=42.3
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhH--HHHHHHHHHHcCcccC
Q 033650 54 RSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGK--VKAIIDSLREAGVKLL 114 (114)
Q Consensus 54 k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGr--v~a~~~~lre~Gl~~~ 114 (114)
++..+..-|.+.++.+|..+|.-+.+.|...|++=. -.++.+. -.+++.++..+|++++
T Consensus 34 RG~~~~~lt~~~~~~ig~A~~~~l~~~~~~~VvVG~--D~R~ss~~~~~a~a~gl~a~Gi~V~ 94 (485)
T 3uw2_A 34 RGVIGKTLDADVARSIGRAFGSEVRAQGGDAVVVAR--DGRLSGPELVGALADGLRAAGVDVV 94 (485)
T ss_dssp EEEBTTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEE--CSCTTHHHHHHHHHHHHHHTTCEEE
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEEE--CCCcCHHHHHHHHHHHHHHCCCEEE
Confidence 333445568899999999999988877767766541 2345554 4577899999999863
No 67
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=60.21 E-value=9.1 Score=33.61 Aligned_cols=54 Identities=15% Similarity=0.308 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCEE---EE----ecCCCc---chh------h-HHHHHHHHHHHcCc
Q 033650 58 GCTRDVAAASKIGKLLGERLLLKDIPAV---SV----FLKREQ---RYH------G-KVKAIIDSLREAGV 111 (114)
Q Consensus 58 ~~~~n~~AA~~vG~~la~ra~e~gI~~v---~~----d~r~~~---~yh------G-rv~a~~~~lre~Gl 111 (114)
..+.|.+.++.+|+.+|+.+++.||+-. ++ |++++. .|+ | -..|+++|+++.|+
T Consensus 71 aat~d~~l~~~~g~~~g~E~ra~Gi~~~laP~vdi~r~P~~gR~~EsfgeDP~lv~~~a~a~v~GlQ~~gV 141 (845)
T 3abz_A 71 ASTFDRDLLETAGKLMAKESIAKNAAVILGPTTNMQRGPLGGRGFESFSEDPYLAGMATSSVVKGMQGEGI 141 (845)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHTTCSEEECCBCCCCSSTTCTTGGGSCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHHcCCCEEecceECCCcCCCCCcccccCCCCHHHHHHHHHHHHHHHhhCCe
Confidence 4568999999999999999999999864 11 223331 111 1 35679999999986
No 68
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=59.94 E-value=15 Score=25.65 Aligned_cols=46 Identities=9% Similarity=0.099 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCC---cchhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKRE---QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~---~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.|..++.+-. +. .....|...|.+++++.|+++
T Consensus 105 ~~~~~~a~~~L~~~G~~~i~~i~-~~~~~~~~~~R~~gf~~~l~~~~~~~ 153 (272)
T 3o74_A 105 RDASRQLAASLLSSAPRSIALIG-ARPELSVSQARAGGFDEALQGYTGEV 153 (272)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEE-ECTTSHHHHHHHHHHHHHTTTCCSEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEEe-cCCCCccHHHHHHHHHHHHHHcCCCh
Confidence 44567777777888999987652 32 224579999999999999763
No 69
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=59.66 E-value=6.3 Score=26.56 Aligned_cols=35 Identities=17% Similarity=0.097 Sum_probs=26.5
Q ss_pred HHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 74 GERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 74 a~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.+.|.++|+..++++. +.. -..+++.++++|+.++
T Consensus 87 ~~~~~~~gi~~i~~~~-g~~-----~~~~~~~a~~~Gir~v 121 (140)
T 1iuk_A 87 LPEVLALRPGLVWLQS-GIR-----HPEFEKALKEAGIPVV 121 (140)
T ss_dssp HHHHHHHCCSCEEECT-TCC-----CHHHHHHHHHTTCCEE
T ss_pred HHHHHHcCCCEEEEcC-CcC-----HHHHHHHHHHcCCEEE
Confidence 3667788999988773 443 3788899999999764
No 70
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=59.30 E-value=14 Score=28.49 Aligned_cols=37 Identities=11% Similarity=0.055 Sum_probs=32.3
Q ss_pred HHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 76 RLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 76 ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
-+++.|++.+.|++=+|-.+-.-++|+++++-++|+-
T Consensus 176 ml~dmG~~SvKffPM~Gl~~leEl~avAkAca~~g~~ 212 (275)
T 3m6y_A 176 LVRDMGGNSLKYFPMKGLAHEEEYRAVAKACAEEGFA 212 (275)
T ss_dssp HHHHHTCCEEEECCCTTTTTHHHHHHHHHHHHHHTCE
T ss_pred HHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCce
Confidence 4678899999999878888888899999999999973
No 71
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=59.25 E-value=24 Score=25.12 Aligned_cols=52 Identities=15% Similarity=0.247 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHHHhh--------CCCCEEEEecCCC--c-chhhHHHHHHHHHHHcCccc
Q 033650 61 RDVAAASKIGKLLGERLLL--------KDIPAVSVFLKRE--Q-RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 61 ~n~~AA~~vG~~la~ra~e--------~gI~~v~~d~r~~--~-~yhGrv~a~~~~lre~Gl~~ 113 (114)
.|..+++.+++.|.+.+++ .|..++.+- .+. . ....|...|.+++.+.|+.+
T Consensus 111 d~~~~g~~~~~~L~~~~~~~~~~~~~g~g~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 173 (309)
T 2fvy_A 111 DSKESGIIQGDLIAKHWAANQGWDLNKDGQIQFVLL-KGEPGHPDAEARTTYVIKELNDKGIKT 173 (309)
T ss_dssp CHHHHHHHHHHHHHHHHHHCGGGCTTCSSSEEEEEE-ECSTTCHHHHHHHHHHHHHHHHTTCCE
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccCCCceEEEEE-EcCCCCccHHHHHHHHHHHHHhcCCce
Confidence 3556777777777776643 677666543 232 1 23579999999999999864
No 72
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=59.16 E-value=16 Score=25.96 Aligned_cols=39 Identities=15% Similarity=0.099 Sum_probs=24.9
Q ss_pred HHHHHhhCCCCEEEEecCCCcc-hhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQR-YHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~-yhGrv~a~~~~lre~Gl~~ 113 (114)
=++...++||.+|+|-. ..+. ....+ +-.+-|+++||++
T Consensus 110 Ca~aIi~agI~rVVy~~-~~~~d~~~~~-~~~~~L~~aGI~V 149 (178)
T 2w4l_A 110 CAKLIIQAGIKEVIFMS-DKYHDSDEAT-AARLLFNMAGVTF 149 (178)
T ss_dssp HHHHHHHTTCCEEEEEE-CTTTTSHHHH-HHHHHHHHHTCEE
T ss_pred HHHHHHHHCCCEEEEEe-ccCCCCcchH-HHHHHHHHCCCEE
Confidence 35667789999998752 2111 12223 3378899999986
No 73
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=58.17 E-value=23 Score=25.92 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
...++.+++-+.+.|.+++.+-. ....| .++...|.+++.+.|+++
T Consensus 144 ~~~~~~~~~~l~~~g~~~ia~i~-~~~~~~~~~~~~~~~~l~~~g~~v 190 (386)
T 3sg0_A 144 DIMAEAIGKYIAKTGAKKVGYIG-FSDAYGEGYYKVLAAAAPKLGFEL 190 (386)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEEe-cCchHHHHHHHHHHHHHHHcCCEE
Confidence 34555666666778999875542 23333 468999999999999876
No 74
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=57.92 E-value=9.4 Score=31.03 Aligned_cols=41 Identities=12% Similarity=0.158 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.+++.|++.+.+.||+.+..-+ | +.+..|.+++.+.||+++
T Consensus 9 ~~a~~l~~~L~~~GV~~vfg~P-G-----~~~~~l~~al~~~~i~~i 49 (564)
T 2q28_A 9 DGMHIIVEALKQNNIDTIYGVV-G-----IPVTDMARHAQAEGIRYI 49 (564)
T ss_dssp EHHHHHHHHHHHTTCCEEEECC-C-----TTTHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHcCCCEEEECC-C-----cchHHHHHHHHhCCCcEE
Confidence 3688999999999999985543 3 567778888887788753
No 75
>3bmx_A Uncharacterized lipoprotein YBBD; beta-N-hexosaminidase, TIM barrel, glycos hydrolase, membrane, palmitate; HET: P4G; 1.40A {Bacillus subtilis} PDB: 3cqm_A* 3nvd_A* 3lk6_A*
Probab=57.40 E-value=4.9 Score=34.07 Aligned_cols=54 Identities=17% Similarity=0.220 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCEE-------EEecCCC---cc-hh------h-HHHHHHHHHHHcCc
Q 033650 58 GCTRDVAAASKIGKLLGERLLLKDIPAV-------SVFLKRE---QR-YH------G-KVKAIIDSLREAGV 111 (114)
Q Consensus 58 ~~~~n~~AA~~vG~~la~ra~e~gI~~v-------~~d~r~~---~~-yh------G-rv~a~~~~lre~Gl 111 (114)
..+.|.+.++.+|+.+|+.+.+.||+-. .-|+|++ ++ |+ + -..|+++|+++.|+
T Consensus 145 aat~d~~l~~~~g~~~a~E~ra~Gi~~~~aPvvDv~r~p~~grig~rsfgeDP~lv~~~a~a~v~Glq~~gV 216 (642)
T 3bmx_A 145 GAARSRINAYQTGSIIGKELSALGINTDFSPVVDINNNPDNPVIGVRSFSSNRELTSRLGLYTMKGLQRQDI 216 (642)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCSSSGGGSSCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HhhCCHHHHHHHHHHHHHHHHHcCCCEEECCccccCCCCCCCcccccccCCCHHHHHHHHHHHHHHHHhCCc
Confidence 3457999999999999999999999863 1133322 11 21 1 35789999999986
No 76
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=57.26 E-value=9.8 Score=31.01 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.+++.|++.+.+.||+.+..-+ | +.+..|.+++.+.||+++
T Consensus 11 ~~a~~l~~~L~~~GV~~vfg~P-G-----~~~~~l~~al~~~~i~~i 51 (568)
T 2c31_A 11 DGFHVLIDALKMNDIDTMYGVV-G-----IPITNLARMWQDDGQRFY 51 (568)
T ss_dssp EHHHHHHHHHHHTTCCEEEECC-C-----TTTHHHHHHHHHTTCEEE
T ss_pred cHHHHHHHHHHHcCCCEEEEeC-C-----CccHHHHHHHHhCCCcEE
Confidence 4688999999999999985443 3 567778888887788753
No 77
>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C
Probab=56.73 E-value=13 Score=26.53 Aligned_cols=46 Identities=7% Similarity=0.172 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCC-----CCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKD-----IPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~g-----I~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+.| ..++.+- .+.. ....|...|.+++.+.|+++
T Consensus 116 ~~~g~~a~~~l~~~g~~~~~~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~~~~~ 169 (304)
T 3o1i_D 116 YWMGYEAGKYLAERHPKGSGKTNIALL-LGPRTRGGTKPVTTGFYEAIKNSDIHI 169 (304)
T ss_dssp HHHHHHHHHHHHTTSBTTTCCEEEEEE-CCCC-----CHHHHHHHHTTTTBTEEE
T ss_pred HHHHHHHHHHHHHhcccCCCCCEEEEE-ECCCCcchHHHHHHHHHHHHhcCCCEE
Confidence 345666666777777 7777665 2322 23569999999999999875
No 78
>1p5d_X PMM, phosphomannomutase; alpha/beta protein, phosphohexomutase, phosphoserine, enzyme complex, enzyme-metal complex, isomerase; HET: SEP G1P; 1.60A {Pseudomonas aeruginosa} SCOP: c.84.1.1 c.84.1.1 c.84.1.1 d.129.2.1 PDB: 1k35_A* 1p5g_X* 1pcj_X* 1pcm_X* 1k2y_X* 2h5a_X* 2h4l_X* 2fkf_A* 3rsm_A 3bkq_X* 3c04_A* 2fkm_X*
Probab=56.69 E-value=33 Score=27.37 Aligned_cols=58 Identities=31% Similarity=0.477 Sum_probs=41.3
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhH--HHHHHHHHHHcCccc
Q 033650 54 RSTIGCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGK--VKAIIDSLREAGVKL 113 (114)
Q Consensus 54 k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGr--v~a~~~~lre~Gl~~ 113 (114)
++..+..-|-+.++.+|..+|.-+.+.|-..|++=. -.+++|. -.++++++..+|+++
T Consensus 20 RG~~~~~~t~~~~~~i~~a~~~~l~~~~~~~VvVG~--D~R~ss~~l~~a~~~gl~a~G~~V 79 (463)
T 1p5d_X 20 RGVVGDTLTAETAYWIGRAIGSESLARGEPCVAVGR--DGRLSGPELVKQLIQGLVDCGCQV 79 (463)
T ss_dssp EEEBTTTBCHHHHHHHHHHHHHHHHHTTCCEEEEEE--CSCTTHHHHHHHHHHHHHTBTCEE
T ss_pred ceeCCCCCCHHHHHHHHHHHHHHHHHcCCCeEEEEE--CCCCCHHHHHHHHHHHHHHCCCEE
Confidence 333444568899999999999988887655665431 2234554 467899999999976
No 79
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=56.67 E-value=25 Score=24.83 Aligned_cols=46 Identities=20% Similarity=0.124 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhh--CCCCEEEEecCCCc---chhhHHHHHHHHHHHc-Cccc
Q 033650 67 SKIGKLLGERLLL--KDIPAVSVFLKREQ---RYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e--~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~-Gl~~ 113 (114)
+..|+.+++.+.+ .|..++.+- .+.. ....|...|.+++++. |+++
T Consensus 108 ~~~g~~~~~~l~~~~~g~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 159 (291)
T 3l49_A 108 YSIGAELALQMVADLGGKGNVLVF-NGFYSVPVCKIRYDQMKYVLEAFPDVKI 159 (291)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEEE-CSCTTSHHHHHHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEEE-eCCCCCchHHHHHHHHHHHHHHCCCCEE
Confidence 3445555555566 788888766 2322 2345899999999999 6763
No 80
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=55.63 E-value=12 Score=30.47 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-CcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~~ 114 (114)
.+++.|++++.+.||+.+..-+ ++.+..|.+++.+. ||+++
T Consensus 4 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~dal~~~~~i~~i 45 (549)
T 3eya_A 4 TVAAYIAKTLESAGVKRIWGVT------GDSLNGLSDSLNRMGTIEWM 45 (549)
T ss_dssp BHHHHHHHHHHHTTCCEEEECC------CGGGHHHHHHHHHHCSSEEE
T ss_pred cHHHHHHHHHHHCCCCEEEEcC------CCchHHHHHHHHhcCCCeEE
Confidence 4788999999999999985443 45678888988876 77653
No 81
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL; 1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Probab=55.39 E-value=9.2 Score=32.84 Aligned_cols=40 Identities=20% Similarity=0.210 Sum_probs=31.1
Q ss_pred HHHHHhhCCCCEEEEecCCCc------------------chhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQ------------------RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~------------------~yhGrv~a~~~~lre~Gl~~ 113 (114)
+|+.+++.|++-+++|| +=+ ++-+-++++++.+.+.|++|
T Consensus 351 ~ad~~~~~G~~~~viDD-gW~~~r~~~~~~~Gdw~~d~~kFP~Glk~lvd~ih~~Glk~ 408 (720)
T 2yfo_A 351 LAKEAASLGIDMVVMDD-GWFGKRNDDNSSLGDWQVNETKLGGSLAELITRVHEQGMKF 408 (720)
T ss_dssp HHHHHHHHTCCEEEECS-SSBTTCSSTTSCTTCCSBCHHHHTSCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCcEEEECc-ccccCCCcccccCCCCeeChhhcCccHHHHHHHHHHCCCEE
Confidence 67888999999999996 321 11122999999999999987
No 82
>3hg3_A Alpha-galactosidase A; glycoprotein, carbohydrate-binding protein, glycosidase, Lys enzyme, (beta/alpha)8 barrel, disease mutation; HET: NAG BMA MAN GLA GLC 2PE; 1.90A {Homo sapiens} PDB: 3tv8_A* 3lx9_A* 3lxa_A* 3lxb_A* 3lxc_A* 3s5z_A* 1r47_A* 1r46_A* 3gxn_A* 3gxt_A* 3hg2_A* 3hg4_A* 3hg5_A* 3gxp_A* 3s5y_A*
Probab=54.92 E-value=24 Score=28.41 Aligned_cols=52 Identities=12% Similarity=0.095 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHHH-HhhCCCCEEEEecCCC---------------cchhhHHHHHHHHHHHcCccc
Q 033650 61 RDVAAASKIGKLLGER-LLLKDIPAVSVFLKRE---------------QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 61 ~n~~AA~~vG~~la~r-a~e~gI~~v~~d~r~~---------------~~yhGrv~a~~~~lre~Gl~~ 113 (114)
-|.+........+++. +++.|++-+++|| |= .++-+-++++++.+++.|++|
T Consensus 33 i~e~~i~~~ad~~~~~Gl~~~G~~~~~iDD-gW~~~~rd~~G~~~~~~~kFP~Gl~~l~~~ih~~Glk~ 100 (404)
T 3hg3_A 33 ISEKLFMEMAELMVSEGWKDAGYEYLCIDD-CWMAPQRDSEGRLQADPQRFPHGIRQLANYVHSKGLKL 100 (404)
T ss_dssp SSHHHHHHHHHHHHHTTHHHHTCCEEECCS-SCBCSSCCTTSCCCBCTTTSTTHHHHHHHHHHHTTCEE
T ss_pred cCHHHHHHHHHHHHHCCcHhhCCeEEEECC-CcCCCCCCCCCCeeeChhhcCCCHHHHHHHHHHCCCee
Confidence 3566666777777654 6789999999996 31 133345999999999999987
No 83
>4evq_A Putative ABC transporter subunit, substrate-bindi component; structural genomics, PSI-biology, midwest center for structu genomics; HET: MSE PHB; 1.40A {Rhodopseudomonas palustris} PDB: 4evr_A
Probab=54.73 E-value=28 Score=25.48 Aligned_cols=45 Identities=11% Similarity=0.178 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
..++.+++-+.+.|.+++.+-. ....| ..+...|.+++.+.|+++
T Consensus 137 ~~~~~~~~~l~~~g~~~ia~i~-~~~~~~~~~~~~~~~~l~~~G~~v 182 (375)
T 4evq_A 137 QIGRATGDAMIKAGLKKAVTVT-WKYAAGEEMVSGFKKSFTAGKGEV 182 (375)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHHcCCcEEEEEe-cCchHHHHHHHHHHHHHHHcCCeE
Confidence 4556667777778999875542 22333 468999999999999875
No 84
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=54.28 E-value=28 Score=26.56 Aligned_cols=45 Identities=9% Similarity=-0.025 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcc-----hhhHHHHHHHHHHHcCcc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQR-----YHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~-----yhGrv~a~~~~lre~Gl~ 112 (114)
+..|+.+++.+.+.|..++.+- .+... ...|...|.+++++.|+.
T Consensus 124 ~~~g~~a~~~L~~~G~r~I~~i-~~~~~~~~~~~~~R~~Gf~~al~~~g~~ 173 (412)
T 4fe7_A 124 YALVESAFLHLKEKGVNRFAFY-GLPESSGKRWATEREYAFRQLVAEEKYR 173 (412)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEE-CCCTTSCCHHHHHHHHHHHHHHTTSSSC
T ss_pred HHHHHHHHHHHHHcCCceEEEe-cccccccccHHHHHHHHHHHHHHHcCCC
Confidence 4556677777778899998765 23322 456999999999999975
No 85
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=54.09 E-value=15 Score=30.05 Aligned_cols=46 Identities=9% Similarity=0.019 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-CcccC
Q 033650 63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKLL 114 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~~ 114 (114)
.+.-..+++.|++.+.+.||+.+.--+ ++.+..|.|++.+. ||+++
T Consensus 7 ~~~~~~~a~~lv~~L~~~GV~~vFg~P------G~~~~~l~dal~~~~~i~~i 53 (578)
T 3lq1_A 7 EQVLTDYLAAFIEELVQAGVKEAIISP------GSRSTPLALMMAEHPILKIY 53 (578)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEECC------CTTTHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECC------CCccHHHHHHHHhCCCceEE
Confidence 345678999999999999999985443 45677888888774 77653
No 86
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*
Probab=53.60 E-value=16 Score=28.13 Aligned_cols=41 Identities=15% Similarity=0.084 Sum_probs=30.3
Q ss_pred HHHHhhCCCCEEEEec----CCCcchhhHHHHHHHHHHHcCcccC
Q 033650 74 GERLLLKDIPAVSVFL----KREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 74 a~ra~e~gI~~v~~d~----r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
-+.+++.|++.|.+.. .+++..-..+..+++.++++||+++
T Consensus 33 ~~ilk~~G~N~VRi~~w~~P~~g~~~~~~~~~~~~~A~~~GlkV~ 77 (332)
T 1hjs_A 33 ENILAANGVNTVRQRVWVNPADGNYNLDYNIAIAKRAKAAGLGVY 77 (332)
T ss_dssp HHHHHHTTCCEEEEEECSSCTTCTTSHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHCCCCEEEEeeeeCCCCCcCCHHHHHHHHHHHHHCCCEEE
Confidence 4556789999987632 2344445688899999999999874
No 87
>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}
Probab=52.19 E-value=14 Score=27.32 Aligned_cols=45 Identities=13% Similarity=0.334 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCC----cchhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKRE----QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~----~~yhGrv~a~~~~lre~Gl~~ 113 (114)
.-|+.+++.+.+.|..++.|- .+. .....|...|.++++++|+.+
T Consensus 171 ~~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~~R~~Gf~~al~~~g~~~ 219 (344)
T 3kjx_A 171 RAGREMAQAILKAGYRRIGFM-GTKMPLDYRARKRFEGFTEVLGKNGVEI 219 (344)
T ss_dssp HHHHHHHHHHHHHTCCSCCEE-ESSTTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCeEEEE-ecCcccCccHHHHHHHHHHHHHHcCCCC
Confidence 345555555556688876554 232 223469999999999999864
No 88
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=51.95 E-value=27 Score=25.46 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=30.9
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
.++.+++-+.+.|.+++.+-. ....| ..+...|.+++.+.|+++
T Consensus 126 ~~~~~~~~l~~~g~~~ia~i~-~~~~~~~~~~~~~~~~l~~~g~~v 170 (358)
T 3hut_A 126 EGPNNAAWMIGDGFTSVAVIG-VTTDWGLSSAQAFRKAFELRGGAV 170 (358)
T ss_dssp HHHHHHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHcCCCEEEEEe-cCcHHHHHHHHHHHHHHHHcCCEE
Confidence 455566666667999875542 22233 468999999999999875
No 89
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=51.48 E-value=23 Score=25.26 Aligned_cols=46 Identities=9% Similarity=0.020 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhhC--CCCEEEEecCCCc--chhhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLK--DIPAVSVFLKREQ--RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~--gI~~v~~d~r~~~--~yhGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.+++.+.+. |..++.+-. +.. ....|...|.+++++.|+.+
T Consensus 110 ~~~g~~~~~~l~~~~~g~~~i~~i~-~~~~~~~~~R~~gf~~~l~~~~~~~ 159 (305)
T 3g1w_A 110 YNAGMNAAYKMAELLDGEGEVAVIT-LPNQLNHQERTTGFKETLEAEFPAI 159 (305)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEEE-CTTCHHHHHHHHHHHHHHHHHCTTE
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEe-CCCcccHHHHHHHHHHHHHhhCCCC
Confidence 34455556666666 888876652 322 23469999999999998753
No 90
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=51.32 E-value=24 Score=22.95 Aligned_cols=22 Identities=50% Similarity=0.844 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhCCCCEEEEec
Q 033650 68 KIGKLLGERLLLKDIPAVSVFL 89 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~ 89 (114)
.+|..+|+.+.+.|++-+++|.
T Consensus 17 ~~G~~la~~L~~~g~~v~vid~ 38 (140)
T 3fwz_A 17 RVGSLLGEKLLASDIPLVVIET 38 (140)
T ss_dssp HHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHCCCCEEEEEC
Confidence 5899999999999999888883
No 91
>3jvd_A Transcriptional regulators; structural genomics, PSI-2, sugar binding protein, transcrip regulation, protein structure initiative; 2.30A {Corynebacterium glutamicum}
Probab=51.28 E-value=30 Score=25.47 Aligned_cols=45 Identities=13% Similarity=0.066 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCcc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~ 112 (114)
+..|+.+++.+.+.|..++.|-. +.. ....|...|.+++++.|+.
T Consensus 159 ~~~~~~a~~~L~~~G~~~I~~i~-~~~~~~~~~~R~~Gf~~al~~~g~~ 206 (333)
T 3jvd_A 159 EAGFFQLTESVLGGSGMNIAALV-GEESLSTTQERMRGISHAASIYGAE 206 (333)
T ss_dssp HHHHHHHHHHHCCSSSCEEEEEE-SCTTSHHHHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe-CCCCCccHHHHHHHHHHHHHHCCCC
Confidence 44567777788888999987652 332 2457999999999999975
No 92
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron}
Probab=51.26 E-value=15 Score=28.98 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=27.9
Q ss_pred HHHHhhCCCCEEEEecCCCc----ch--------------hhHHHHHHHHHHHcCccc
Q 033650 74 GERLLLKDIPAVSVFLKREQ----RY--------------HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 74 a~ra~e~gI~~v~~d~r~~~----~y--------------hGrv~a~~~~lre~Gl~~ 113 (114)
-+.++++||+.|++- +.++ .| .--|..+++++++.||+|
T Consensus 60 ~~~mK~~GikyvIl~-~~~~~gf~~~pS~~~~~~~~~~p~~Dlv~~~l~aa~k~Gmkv 116 (340)
T 4h41_A 60 FQHMKRIGIDTVIMI-RSGYRKFMTYPSPYLLKKGCYMPSVDLVDMYLRLAEKYNMKF 116 (340)
T ss_dssp HHHHHHTTCCEEEES-CSEETTEESSCCHHHHHTTCCCCSBCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHcCCCEEEEE-EEeeCCeeccCcccccccCccCCcccHHHHHHHHHHHhCCeE
Confidence 345689999999874 2211 11 123999999999999986
No 93
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=50.34 E-value=16 Score=29.43 Aligned_cols=40 Identities=10% Similarity=-0.007 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-Cccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~ 113 (114)
.+++.|++.+.+.||+.+..-+ ++.+..|+|++.+. +|++
T Consensus 6 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~i~~ 46 (552)
T 1ovm_A 6 CVADYLLDRLTDCGADHLFGVP------GDYNLQFLDHVIDSPDICW 46 (552)
T ss_dssp BHHHHHHHHHHHTTCCEEEECC------CGGGHHHHHHHHHCSSCEE
T ss_pred CHHHHHHHHHHHcCCCEEEECC------ChhHHHHHHHHhcCCCceE
Confidence 3688999999999999985443 45677799998875 6765
No 94
>1weh_A Conserved hypothetical protein TT1887; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.129.1.1
Probab=50.07 E-value=38 Score=23.57 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
.++|+.+|+.||++ |+.=| . |+.. |-..|..+++.++|-.
T Consensus 19 ~~~A~~lg~~La~~----g~~lV--~--Ggg~--GiM~aa~~gAl~~gG~ 58 (171)
T 1weh_A 19 YARWVRYGEVLAEE----GFGLA--C--GGYQ--GGMEALARGVKAKGGL 58 (171)
T ss_dssp HHHHHHHHHHHHHT----TEEEE--E--CCSS--THHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHC----CCEEE--e--CChh--hHHHHHHHHHHHcCCc
Confidence 45788888888775 54433 4 5543 9999999999998854
No 95
>1zy9_A Alpha-galactosidase; TM1192, struc genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI, hydrolase; 2.34A {Thermotoga maritima} SCOP: b.30.5.11 c.1.8.13
Probab=49.88 E-value=15 Score=30.57 Aligned_cols=41 Identities=7% Similarity=-0.086 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCCEEEEecCC-----------CcchhhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKR-----------EQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~-----------~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+|+.+.+.|++-+++|+ + ..++-+ ++++++.+.+.|++|
T Consensus 215 ~~~ad~~~~~G~~~~~IDd-gW~~~~Gdw~~d~~kFP~-lk~lvd~lh~~Glk~ 266 (564)
T 1zy9_A 215 LKNLKLAKNFPFEVFQIDD-AYEKDIGDWLVTRGDFPS-VEEMAKVIAENGFIP 266 (564)
T ss_dssp HHHHHHGGGTTCSEEEECT-TSEEETTEEEEECTTCCC-HHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhcCCcEEEECc-ccccccCCcccCcccCCC-HHHHHHHHHHCCCEE
Confidence 4456677799999999996 2 224556 999999999999986
No 96
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=49.32 E-value=33 Score=22.96 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=27.6
Q ss_pred CCCCCcEEEEEEeCCceeeEEEECCCCeEEEEe
Q 033650 14 QPSEPYVLKMHLTNKYVSAQVVHSPTATVASSA 46 (114)
Q Consensus 14 ~~~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~sa 46 (114)
......+..+.....-++++|+|..+|++|=-.
T Consensus 53 ~~n~~L~F~vdee~~~~vVkVvD~~TgEVIRqI 85 (117)
T 2hc5_A 53 PSQVHLKFELHDKLNEYYVKVIEDSTNEVIREI 85 (117)
T ss_dssp TSSCCEEEEEEEETTEEEEEEEETTTTEEEEEE
T ss_pred hcCCceEEEEecCCCcEEEEEEECCCCcEEEeC
Confidence 345678889999999999999999999997433
No 97
>1wek_A Hypothetical protein TT1465; rossman fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: c.129.1.1
Probab=49.29 E-value=33 Score=25.08 Aligned_cols=40 Identities=25% Similarity=0.277 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
.++|+.+|+.||++ |+.=| . |+. .|-..|+.+++.++|-.
T Consensus 55 ~~~A~~lg~~La~~----g~~lV--s--GGg--~GiM~aa~~gAl~~gG~ 94 (217)
T 1wek_A 55 YEAGYRLGRALAEA----GFGVV--T--GGG--PGVMEAVNRGAYEAGGV 94 (217)
T ss_dssp HHHHHHHHHHHHHH----TCEEE--E--CSC--SHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHC----CCEEE--e--CCh--hhHHHHHHHHHHHcCCC
Confidence 46788888888875 65544 3 554 69999999999998743
No 98
>4do4_A Alpha-N-acetylgalactosaminidase; pharmacological chaperone, (beta/alpha)8 barrel, glycosidase carbohydrate-binding protein, glycoprotein, lysosome; HET: NAG BMA MAN DJN CIT FUC; 1.40A {Homo sapiens} PDB: 3h54_A* 3h53_A* 3igu_A* 3h55_A* 4do5_A* 4do6_A* 1ktb_A* 1ktc_A*
Probab=48.75 E-value=20 Score=27.61 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHH-HhhCCCCEEEEecCCC--------------cchhhHHHHHHHHHHHcCccc
Q 033650 63 VAAASKIGKLLGER-LLLKDIPAVSVFLKRE--------------QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 63 ~~AA~~vG~~la~r-a~e~gI~~v~~d~r~~--------------~~yhGrv~a~~~~lre~Gl~~ 113 (114)
.+........+++. .++.|++-+++|+ |= .++-.-+++|++-+.+.||+|
T Consensus 35 e~~i~~~ad~~~~~gl~~~Gy~yv~iDd-gW~~~rd~~G~~~~d~~rFP~G~k~ladyih~~Glk~ 99 (400)
T 4do4_A 35 EQLFMEMADRMAQDGWRDMGYTYLNIDD-CWIGGRDASGRLMPDPKRFPHGIPFLADYVHSLGLKL 99 (400)
T ss_dssp HHHHHHHHHHHHHSSHHHHTCCEEECCS-SCEEEECTTCCEEECTTTSTTCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHCcchhhCCeEEEECC-CcccCCCCCCCEeECcccCCcccHHHHHHHHHCCceE
Confidence 34455556666665 5678999999996 21 122223999999999999987
No 99
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=48.67 E-value=11 Score=30.56 Aligned_cols=41 Identities=12% Similarity=0.211 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.+++.|++.+.+.||+.+..-+ ++.+..|.+++.+.||+++
T Consensus 5 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~i~~i 45 (563)
T 2uz1_A 5 TGGELVVRTLIKAGVEHLFGLH------GAHIDTIFQACLDHDVPII 45 (563)
T ss_dssp EHHHHHHHHHHHHTCCCEEECC------CGGGHHHHHHHHHHTCCEE
T ss_pred CHHHHHHHHHHHCCCCEEEECC------CCchHHHHHHHHhcCCcEE
Confidence 3688999999999999985443 4567788898887777653
No 100
>2oxn_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: OAN; 1.70A {Vibrio cholerae} PDB: 3gs6_A* 3gsm_A* 1y65_A* 1tr9_A
Probab=48.65 E-value=23 Score=27.76 Aligned_cols=51 Identities=16% Similarity=0.276 Sum_probs=36.7
Q ss_pred CC--HHHHHHHHHHHHHHHhhCCCCEE---EEec-CC-----Ccchh------h-HHHHHHHHHHHcCc
Q 033650 61 RD--VAAASKIGKLLGERLLLKDIPAV---SVFL-KR-----EQRYH------G-KVKAIIDSLREAGV 111 (114)
Q Consensus 61 ~n--~~AA~~vG~~la~ra~e~gI~~v---~~d~-r~-----~~~yh------G-rv~a~~~~lre~Gl 111 (114)
.| .+.++.+|+++|+.+.+.||+-. ++|. |+ +..|+ + -..|+++|++++|+
T Consensus 87 ~d~~~~la~~~g~~~a~E~ra~Gi~~~~aPv~Dv~~~~~~ig~rsfgeDP~lv~~~a~a~v~Glq~~gV 155 (340)
T 2oxn_A 87 AENGVELAEQGGWLMAAELIAHDVDLSFAPVLDMGFACKAIGNRAFGEDVQTVLKHSSAFLRGMKAVGM 155 (340)
T ss_dssp STTHHHHHHHHHHHHHHHHHTTTCCEECCCBCCCCSCSTTTGGGSSCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCCCEEecCccCCCCCCCcCcCCCCCCCHHHHHHHHHHHHHHHHHCCc
Confidence 57 89999999999999999999963 1232 22 11121 1 35789999999987
No 101
>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}
Probab=47.89 E-value=25 Score=24.92 Aligned_cols=44 Identities=18% Similarity=0.110 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
..|+.+++.+. .|..++.|-. +.. ....|...|.+++++.|+.+
T Consensus 109 ~~g~~a~~~L~-~G~~~I~~i~-~~~~~~~~~~R~~Gf~~~l~~~g~~~ 155 (277)
T 3hs3_A 109 KGGKESIKLLS-KKIEKVLIQH-WPLSLPTIRERIEAMTAEASKLKIDY 155 (277)
T ss_dssp HHHHHHHHTSC-TTCCEEEEEE-SCTTSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHH-hCCCEEEEEe-CCCcCccHHHHHHHHHHHHHHCCCCC
Confidence 34556666666 8999987652 322 24569999999999999874
No 102
>1jye_A Lactose operon repressor; gene regulation, protein stability, protein DNA-binding, transcription; 1.70A {Escherichia coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A 3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A* 1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A 1lqc_A 1lcc_A* ...
Probab=47.78 E-value=31 Score=25.54 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
.-|+.+++.+.+.|..++.|- .+.. ....|...|.+++++.|+.+
T Consensus 165 ~~~~~a~~~L~~~G~~~I~~i-~g~~~~~~~~~R~~Gf~~al~~~gi~~ 212 (349)
T 1jye_A 165 DGTRLGVEHLVALGHQQIALL-AGPLSSVSARLRLAGWHKYLTRNQIQP 212 (349)
T ss_dssp HHHHHHHHHHHHHTCCSEEEE-ECCTTSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEE-eCCCCCccHHHHHHHHHHHHHHcCCCc
Confidence 345555566666798887665 2322 23468999999999999863
No 103
>3e38_A Two-domain protein containing predicted PHP-like dependent phosphoesterase; structural genomics; 2.20A {Bacteroides vulgatus atcc 8482}
Probab=47.69 E-value=25 Score=27.48 Aligned_cols=42 Identities=17% Similarity=0.165 Sum_probs=28.7
Q ss_pred HHHHHhhCCCCEEEEecCCCcchh---------hHHHHHHHHHHHcCcccC
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYH---------GKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yh---------Grv~a~~~~lre~Gl~~~ 114 (114)
++++|++.|++.+.+-|...+..+ ..+..+.+.+++.|+.++
T Consensus 39 lv~~A~~~Gl~~iaiTDH~~~~~~~~~~~~d~~~g~~~~~~~a~~~gi~vi 89 (343)
T 3e38_A 39 RVDEAYRDGLDAISLTEHIEYRPHKQDVVSDHNRSFDLCREQAEKLGILLI 89 (343)
T ss_dssp HHHHHHHTTCSEECCEEESSCCTTTTTBCCCTTHHHHHHHHHHHHHTCEEC
T ss_pred HHHHHHHcCCCEEEECCCCcccccccccchhHHHHHHHHHHHHHhCCCEEE
Confidence 889999999999877765322111 234555666778888765
No 104
>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}
Probab=47.60 E-value=34 Score=24.91 Aligned_cols=45 Identities=13% Similarity=0.127 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhh--CCCCEEEEecCCCc---chhhHHHHHHHHHHHc-Cccc
Q 033650 68 KIGKLLGERLLL--KDIPAVSVFLKREQ---RYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e--~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~-Gl~~ 113 (114)
..|+.+++.+.+ .|..++.|- .+.. ....|...|.+++.+. |+++
T Consensus 120 ~~g~~a~~~L~~~~~G~~~I~~i-~g~~~~~~~~~R~~Gf~~al~~~pgi~~ 170 (332)
T 2rjo_A 120 AYGEETATQLFKSMGGKGGVVAL-GGIFSNVPAIERKAGLDAALKKFPGIQL 170 (332)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEE-ECCTTCHHHHHHHHHHHHHHHTCTTEEE
T ss_pred HHHHHHHHHHHHHcCCCCeEEEE-ECCCCCccHHHHHHHHHHHHHhCCCcEE
Confidence 345555555555 688887655 2321 2357999999999999 9864
No 105
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=47.26 E-value=22 Score=29.14 Aligned_cols=41 Identities=17% Similarity=0.235 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc--CcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA--GVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~--Gl~~~ 114 (114)
.+++.|++.+.+.||+.+..-+ ++.+..|++++.+. ||+++
T Consensus 5 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~~i~~v 47 (589)
T 2pgn_A 5 RGADLIVEALEEYGTEQVVGFI------GHTSHFVADAFSKSHLGKRVI 47 (589)
T ss_dssp EHHHHHHHHHHHTTCCEEEEEC------SGGGHHHHHHHHTSTTSTTCB
T ss_pred cHHHHHHHHHHHcCCCEEEEec------CCchHHHHHHHHhcCCCCeEE
Confidence 3688999999999999985553 45677899998774 57653
No 106
>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*
Probab=46.63 E-value=25 Score=25.40 Aligned_cols=49 Identities=12% Similarity=0.230 Sum_probs=31.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEecCCC--c-chhhHHHHHHHHHHHcCccc
Q 033650 62 DVAAASKIGKLLGERLLLKDIPAVSVFLKRE--Q-RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~--~-~yhGrv~a~~~~lre~Gl~~ 113 (114)
|..+++..++.|.+++ .|..++.+- .+. . ....|...|.+++++.|+++
T Consensus 105 ~~~~g~~a~~~L~~~~--~G~~~I~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~~ 156 (313)
T 2h3h_A 105 NYQAGYTAGLIMKELL--GGKGKVVIG-TGSLTAMNSLQRIQGFKDAIKDSEIEI 156 (313)
T ss_dssp HHHHHHHHHHHHHHHH--TSCSEEEEE-ESCSSCHHHHHHHHHHHHHHTTSSCEE
T ss_pred HHHHHHHHHHHHHHHc--CCCCEEEEE-ECCCCCccHHHHHHHHHHHhcCCCCEE
Confidence 3445555555555443 277887655 232 2 23569999999999999875
No 107
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=46.56 E-value=45 Score=24.24 Aligned_cols=46 Identities=9% Similarity=0.184 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
...++.+++-+.+.|.+++.+-. ..+.| ..+...|.+++.+.|+++
T Consensus 124 ~~~~~~~~~~l~~~g~~~ia~i~-~~~~~g~~~~~~~~~~l~~~g~~v 170 (368)
T 4eyg_A 124 AQSSIIIGDWAAKNGIKKVATLT-SDYAPGNDALAFFKERFTAGGGEI 170 (368)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEEe-cCchHhHHHHHHHHHHHHHcCCEE
Confidence 34566677777778999875432 22223 356899999999999875
No 108
>2yb1_A Amidohydrolase; HET: AMP; 1.90A {Chromobacterium violaceum} PDB: 2yb4_A
Probab=46.51 E-value=24 Score=26.29 Aligned_cols=40 Identities=10% Similarity=0.086 Sum_probs=28.6
Q ss_pred HHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 72 LLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.++++|++.|++.+.+-|... ..| +..+.+.+++.||++|
T Consensus 21 elv~~A~~~Gl~~iaiTDH~~--~~g-~~~~~~~~~~~gi~vi 60 (292)
T 2yb1_A 21 EVIDRAAARAPALLALTDHDC--TGG-LAEAAAAAARRGIPFL 60 (292)
T ss_dssp HHHHHHHTTCCSEEEECCBTC--CTT-HHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHCCCCEEEEecCCc--ccc-HHHHHHHHHHcCCEEE
Confidence 389999999999998876432 223 3456667778888764
No 109
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=46.39 E-value=16 Score=29.57 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-CcccC
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKLL 114 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~~ 114 (114)
+++.|++.+.+.||+.+..-+ ++.+..|++++.+. ||+++
T Consensus 6 ~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~i~~v 46 (563)
T 2vk8_A 6 LGKYLFERLKQVNVNTVFGLP------GDFNLSLLDKIYEVEGMRWA 46 (563)
T ss_dssp HHHHHHHHHHHTTCCEEEECC------CGGGHHHHHGGGGSTTCEEC
T ss_pred HHHHHHHHHHHcCCCEEEEcC------CcchHHHHHHHhhcCCceEE
Confidence 688999999999999985443 45677789998775 67754
No 110
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=46.06 E-value=21 Score=29.04 Aligned_cols=40 Identities=18% Similarity=0.151 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-Cccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~ 113 (114)
..++.|++.+.+.||+.+..-+ ++.+..|++++.+. +|++
T Consensus 26 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~i~~ 66 (570)
T 2vbf_A 26 TVGDYLLDRLHELGIEEIFGVP------GDYNLQFLDQIISREDMKW 66 (570)
T ss_dssp BHHHHHHHHHHHTTCCEEEECC------CGGGHHHHHHHHHCSSCEE
T ss_pred CHHHHHHHHHHHcCCCEEEECC------CcchHHHHHHHhcCCCCeE
Confidence 5789999999999999985443 45677889998875 6765
No 111
>2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1
Probab=46.01 E-value=19 Score=29.00 Aligned_cols=44 Identities=14% Similarity=0.113 Sum_probs=32.3
Q ss_pred HHHHHHHHhhCCCCEEEEecCCCcchhh-----HHHHHHHHHHHcCcccC
Q 033650 70 GKLLGERLLLKDIPAVSVFLKREQRYHG-----KVKAIIDSLREAGVKLL 114 (114)
Q Consensus 70 G~~la~ra~e~gI~~v~~d~r~~~~yhG-----rv~a~~~~lre~Gl~~~ 114 (114)
..-+.+.|.++|++.+++.. .++.-.| .-..+.+.++++|+.++
T Consensus 77 ~~~~v~e~~~~Gi~~vv~~s-~G~~e~g~~g~~~~~~l~~~a~~~g~~vi 125 (457)
T 2csu_A 77 VKDTLIQCGEKGVKGVVIIT-AGFGETGEEGKREEKELVEIAHKYGMRII 125 (457)
T ss_dssp HHHHHHHHHHHTCCEEEECC-CSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHcCCCEEEEec-CCCCccccccHHHHHHHHHHHHHcCCEEE
Confidence 34556778888999988774 6665333 26788899999999764
No 112
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=45.78 E-value=21 Score=29.34 Aligned_cols=41 Identities=15% Similarity=0.197 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc--CcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA--GVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~--Gl~~~ 114 (114)
.+++.|++.+.+.||+.+.--+ ++.+..|.+++.+. ||+++
T Consensus 12 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~dal~~~~~~i~~i 54 (603)
T 4feg_A 12 LAGAAVIKVLEAWGVDHLYGIP------GGSINSIMDALSAERDRIHYI 54 (603)
T ss_dssp EHHHHHHHHHHHTTCCEEEECC------CGGGHHHHHHHHHTTTTSEEE
T ss_pred eHHHHHHHHHHHCCCCEEEEeC------CCchHHHHHHHHhccCCCeEE
Confidence 4788999999999999984333 56678899999874 77753
No 113
>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}
Probab=45.08 E-value=22 Score=24.70 Aligned_cols=51 Identities=16% Similarity=0.255 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHc-Cccc
Q 033650 62 DVAAASKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~-Gl~~ 113 (114)
|..+++..++.|.+++.+.|..++.|- .+.. ....|...|.+++.+. |+++
T Consensus 107 ~~~~g~~~~~~l~~~~~~~G~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~~~~~~ 161 (276)
T 3ksm_A 107 NYAAGQLAARALLATLDLSKERNIALL-RLRAGNASTDQREQGFLDVLRKHDKIRI 161 (276)
T ss_dssp HHHHHHHHHHHHHHHSCTTSCEEEEEC-BCCTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred HHHHHHHHHHHHHHhcCcCCCceEEEE-EcCCCchhHHHHHHHHHHHHHhCCCcEE
Confidence 445555555555554433388888765 2322 2346999999999998 8864
No 114
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=44.93 E-value=13 Score=28.16 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
+.++++|.++|++.+.+-| =+ + .-...+.+.+++.||+++
T Consensus 106 e~F~~~~~~aGvdG~IipD-LP--~-eE~~~~~~~~~~~Gl~~I 145 (252)
T 3tha_A 106 EKFVKKAKSLGICALIVPE-LS--F-EESDDLIKECERYNIALI 145 (252)
T ss_dssp HHHHHHHHHTTEEEEECTT-CC--G-GGCHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHcCCCEEEeCC-CC--H-HHHHHHHHHHHHcCCeEE
Confidence 4588999999999987553 22 2 226678888889998764
No 115
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=44.68 E-value=51 Score=20.95 Aligned_cols=22 Identities=18% Similarity=-0.011 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhhCCCCEEEEec
Q 033650 68 KIGKLLGERLLLKDIPAVSVFL 89 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~ 89 (114)
.+|..+|+.+.+.|.+-+.+|.
T Consensus 16 ~iG~~la~~L~~~g~~V~~id~ 37 (141)
T 3llv_A 16 AAGVGLVRELTAAGKKVLAVDK 37 (141)
T ss_dssp HHHHHHHHHHHHTTCCEEEEES
T ss_pred HHHHHHHHHHHHCCCeEEEEEC
Confidence 4899999999999998888883
No 116
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=44.61 E-value=18 Score=29.46 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-Cccc
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~ 113 (114)
+++.|++.+.+.||+.+..-+ ++.+..|++++.+. ||++
T Consensus 5 ~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~i~~ 44 (568)
T 2wvg_A 5 VGTYLAERLVQIGLKHHFAVA------GDYNLVLLDNLLLNKNMEQ 44 (568)
T ss_dssp HHHHHHHHHHHTTCSEEEECC------CTTTHHHHHHHHTCTTSEE
T ss_pred HHHHHHHHHHHcCCCEEEeCC------CCccHHHHHHHhccCCceE
Confidence 688999999999999985443 45677788888765 6765
No 117
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=44.28 E-value=20 Score=30.79 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCEE---EEe-----cCCCc--chh-------h-HHHHHHHHHHHcCc
Q 033650 58 GCTRDVAAASKIGKLLGERLLLKDIPAV---SVF-----LKREQ--RYH-------G-KVKAIIDSLREAGV 111 (114)
Q Consensus 58 ~~~~n~~AA~~vG~~la~ra~e~gI~~v---~~d-----~r~~~--~yh-------G-rv~a~~~~lre~Gl 111 (114)
..+.|.+.++.+|+.+|+.+++.||+-. ++| +|++. ++- | -..|+++++++.|+
T Consensus 82 aat~d~~l~~~~g~~~g~E~ra~Gi~~~laP~vd~v~r~P~~gR~~e~fgeDP~l~~~~a~a~v~Glq~~gV 153 (713)
T 3zyz_A 82 ASTWDVNLIRERGQFIGEEVKASGIHVILGPVAGPLGKTPQGGRNWEGFGVDPYLTGIAMGQTINGIQSVGV 153 (713)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCSEECCCBCSSCCCSTTCTTGGGTTCSCHHHHHHHHHHHHHHHHHTTC
T ss_pred HhcCCHHHHHHHHHHHHHHHHhcCCCEEECCeecccCCCCCCCcccccccCCHHHHHHHHHHHHHHHhhCCe
Confidence 3467999999999999999999999864 223 23221 111 1 35788999999986
No 118
>4g6c_A Beta-hexosaminidase 1; ssgcid, niaid, structural genomics, Na institute of allergy and infectious diseases; 1.38A {Burkholderia cenocepacia} PDB: 4gnv_A*
Probab=44.04 E-value=47 Score=26.06 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCEE---EEecC---CC----cchh------h-HHHHHHHHHHHcCc
Q 033650 64 AAASKIGKLLGERLLLKDIPAV---SVFLK---RE----QRYH------G-KVKAIIDSLREAGV 111 (114)
Q Consensus 64 ~AA~~vG~~la~ra~e~gI~~v---~~d~r---~~----~~yh------G-rv~a~~~~lre~Gl 111 (114)
+.++.+|+++|+.+++.||+-. ++|.. +. ..|+ + -..|+++|++++|+
T Consensus 107 ~la~~~g~~~a~El~a~Gi~~~~aPv~Dv~~gr~~~iG~rsfgeDP~lv~~~a~A~v~Glq~~GV 171 (348)
T 4g6c_A 107 KVATAVGYILAAELRACGIDMSFTPVLDLDYGHSKVIGDRAFHRDPRVVTLLAKSLNHGLSLAGM 171 (348)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEECCCBCCCCCSCCTTTGGGSCCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCCEeecCccCCCCCCCCCccCcCCCCCHHHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999963 23442 11 1122 1 35789999999997
No 119
>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}
Probab=44.04 E-value=31 Score=26.07 Aligned_cols=43 Identities=16% Similarity=0.183 Sum_probs=31.1
Q ss_pred HHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 70 GKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 70 G~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
-.-+++.|.++|+..+++.. .++.-++ ...+.+.+++.|+.++
T Consensus 83 ~~~~v~ea~~~Gi~~vVi~t-~G~~~~~-~~~l~~~A~~~gi~vi 125 (294)
T 2yv1_A 83 AKDAVFEAIDAGIELIVVIT-EHIPVHD-TMEFVNYAEDVGVKII 125 (294)
T ss_dssp HHHHHHHHHHTTCSEEEECC-SCCCHHH-HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEEC-CCCCHHH-HHHHHHHHHHcCCEEE
Confidence 34567788899999877763 5654433 6788889999998653
No 120
>3i09_A Periplasmic branched-chain amino acid-binding Pro; type I periplasmic binding protein, structural genomics, JOI for structural genomics; HET: MSE CIT; 1.80A {Burkholderia mallei}
Probab=43.94 E-value=45 Score=24.55 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
..++.+++-+.+.|.+++.+-. ..+.| .++...|.+.+.+.|+++
T Consensus 126 ~~~~~~~~~l~~~g~~~vaii~-~~~~~g~~~~~~~~~~~~~~G~~v 171 (375)
T 3i09_A 126 ALAKGTGSAVVKQGGKTWFFLT-ADYAFGKALEKNTADVVKANGGKV 171 (375)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHcCCceEEEEe-cccHHHHHHHHHHHHHHHHcCCEE
Confidence 3455666667778999875542 23333 458899999999999875
No 121
>1uas_A Alpha-galactosidase; TIM-barrel, beta-alpha-barrel, greek KEY motif, hydrolase; HET: GLA; 1.50A {Oryza sativa} SCOP: b.71.1.1 c.1.8.1
Probab=43.90 E-value=19 Score=27.80 Aligned_cols=52 Identities=17% Similarity=0.128 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHH-HhhCCCCEEEEecCCCc---------------chhhHHHHHHHHHHHcCccc
Q 033650 61 RDVAAASKIGKLLGER-LLLKDIPAVSVFLKREQ---------------RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 61 ~n~~AA~~vG~~la~r-a~e~gI~~v~~d~r~~~---------------~yhGrv~a~~~~lre~Gl~~ 113 (114)
-|.+........+++. +.+.|++-+++|+ |=+ ++-.-++++++-+++.|++|
T Consensus 23 ~~e~~i~~~ad~~~~~gl~~~G~~~v~iDd-gW~~~~rd~~G~~~~~~~~FP~Gl~~l~~~ih~~Glk~ 90 (362)
T 1uas_A 23 INEQIIRETADALVNTGLAKLGYQYVNIDD-CWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKL 90 (362)
T ss_dssp CCHHHHHHHHHHHHHTSHHHHTCCEEECCS-SCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHHcCchhcCCcEEEECC-CcCCCCCCCCCCeeEChhccCccHHHHHHHHHHCCCEe
Confidence 4555555544444333 3678999999996 311 13234999999999999987
No 122
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=43.71 E-value=18 Score=29.80 Aligned_cols=44 Identities=7% Similarity=0.006 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-CcccC
Q 033650 65 AASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKLL 114 (114)
Q Consensus 65 AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~~ 114 (114)
.-...++.|++.+.+.||+.|..-+ ++.+..|.+++.+. +|+++
T Consensus 29 ~~~~~a~~lv~~L~~~GV~~vFg~P------G~~~~~l~dal~~~~~i~~i 73 (604)
T 2x7j_A 29 PITHYIGSFIDEFALSGITDAVVCP------GSRSTPLAVLCAAHPDISVH 73 (604)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEECC------CSTTHHHHHHHHHCTTCEEE
T ss_pred hhHHHHHHHHHHHHHcCCCEEEECc------CcccHHHHHHHHhCCCceEE
Confidence 3457899999999999999985443 45677789988764 67653
No 123
>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}
Probab=43.51 E-value=55 Score=24.18 Aligned_cols=42 Identities=5% Similarity=-0.061 Sum_probs=29.1
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCc
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGV 111 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl 111 (114)
.|+.+++.+.+.|..++.|- .+.. ....|...|.+++.+.|+
T Consensus 171 ~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~al~~~g~ 215 (348)
T 3bil_A 171 GIAAAVELLAHNNALPIGYL-SGPMDTSTGRERLEDFKAACANSKI 215 (348)
T ss_dssp HHHHHHHHHHHTTCCSEEEE-CCCTTSHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHCCCCeEEEE-eCCCCCccHHHHHHHHHHHHHHcCc
Confidence 34555555556798888665 2332 235699999999999997
No 124
>2xn2_A Alpha-galactosidase; hydrolase, glycosidase; HET: SME GLA IMD; 1.58A {Lactobacillus acidophilus ncfm} PDB: 2xn1_A* 2xn0_A*
Probab=43.44 E-value=27 Score=29.93 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=31.9
Q ss_pred HHHHHHHhhCCCCEEEEecCCCc------------------chhhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQ------------------RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~------------------~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+|+.+++.|++-+++|+ |=+ ++-+-++++++.+++.|++|
T Consensus 353 ~~~ad~~~~~G~~~~viDD-GW~~~r~~~~~~~Gd~~~d~~kFP~Glk~lv~~ih~~Glk~ 412 (732)
T 2xn2_A 353 KTIVDKAKKLGLEMFVLDD-GWFGHRDDDNSSLGDWKVYKKKFPNGLGHFADYVHEQGLKF 412 (732)
T ss_dssp HHHHHHHHHTTCCEEEECS-SSBTTCSSTTSCTTCCSBCTTTCTTCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCcEEEEcC-cccccCCCCccccCceeeCchhcCccHHHHHHHHHHcCCEE
Confidence 3367788899999999996 211 12223999999999999987
No 125
>3mi6_A Alpha-galactosidase; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, hydrolase; 2.70A {Lactobacillus brevis}
Probab=43.42 E-value=26 Score=30.44 Aligned_cols=42 Identities=7% Similarity=0.088 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCCEEEEecCCC------------------cchhhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKRE------------------QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~------------------~~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+|+.+++.|++-+++|| |= .++-+-++.+++.+++.|++|
T Consensus 350 l~~ad~~~~~G~e~fviDD-GW~~~r~~d~~~~Gdw~~d~~kFP~Gl~~lv~~ih~~Glk~ 409 (745)
T 3mi6_A 350 MTIVNQAKRLGIEMFVLDD-GWFGHRDDDTTSLGDWFVDQRKFPDGIEHFSQAVHQQGMKF 409 (745)
T ss_dssp HHHHHHHHHHTCCEEEECT-TCBTTCSSTTSCTTCCSBCTTTCTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCcEEEECc-ccccCCCCCcccCCCceeChhhcCccHHHHHHHHHHCCCEE
Confidence 4457778899999999997 21 123345999999999999987
No 126
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=43.15 E-value=42 Score=24.57 Aligned_cols=44 Identities=9% Similarity=0.180 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
.+..+++-+.+.|.+++.+-. ....| ..+...|.+++.+.|+++
T Consensus 128 ~~~~~~~~l~~~g~~~iaii~-~~~~~g~~~~~~~~~~~~~~G~~v 172 (364)
T 3lop_A 128 EIDKMITALVTIGVTRIGVLY-QEDALGKEAITGVERTLKAHALAI 172 (364)
T ss_dssp HHHHHHHHHHHTTCCCEEEEE-ETTHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHcCCceEEEEE-eCchhhHHHHHHHHHHHHHcCCcE
Confidence 355666777788998875432 22333 368899999999999876
No 127
>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1
Probab=42.65 E-value=9.6 Score=28.23 Aligned_cols=46 Identities=17% Similarity=0.181 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCC-cchhhHHHHHHHHHHHcCcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKRE-QRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~-~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
-+|++-+.-+++.|++.|.+-- +- ..+++-+..+++.+.+.||+.|
T Consensus 75 ~TGeis~~~l~~~Ga~~Vllgh-seRR~~~~e~~~k~~~A~~~GL~~i 121 (225)
T 1hg3_A 75 HTGHVLPEAVKEAGAVGTLLNH-SENRMILADLEAAIRRAEEVGLMTM 121 (225)
T ss_dssp CTTCCCHHHHHHTTCCEEEESC-GGGCCBHHHHHHHHHHHHHHTCEEE
T ss_pred ccCcccHHHHHHcCCCEEEECc-chhcCCHHHHHHHHHHHHHCCCEEE
Confidence 4788889999999999986542 22 2567789999999999999753
No 128
>3o0f_A Putative metal-dependent phosphoesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: AMP; 1.94A {Bifidobacterium adolescentis} PDB: 3e0f_A*
Probab=42.29 E-value=35 Score=26.17 Aligned_cols=40 Identities=20% Similarity=0.183 Sum_probs=28.8
Q ss_pred HHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 72 LLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.+.++|++.|++.+.+-|.. ...| +..+.+.+++.||.+|
T Consensus 32 elv~~A~~~Gl~~iaiTDH~--~~~g-~~~~~~~~~~~gi~~i 71 (301)
T 3o0f_A 32 TLVEQARKLGLHGVAIADHD--TTAG-WDEATEASEEIGLPLL 71 (301)
T ss_dssp HHHHHHHHTTCSEEEECCBT--CCTT-HHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHcCCCEEEEcCCC--cccc-HHHHHHHHHhcCCEEE
Confidence 48899999999999887632 2223 4456667788898764
No 129
>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A
Probab=42.26 E-value=44 Score=24.78 Aligned_cols=44 Identities=14% Similarity=0.058 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
.++.+++-+.+.|.+++.+-. +...| ..+...|.+++.+.|+++
T Consensus 127 ~~~~~~~~l~~~g~~~ia~i~-~~~~~~~~~~~~~~~~l~~~G~~v 171 (385)
T 1pea_A 127 NSAPLAAYLIRHYGERVVFIG-SDYIYPRESNHVMRHLYRQHGGTV 171 (385)
T ss_dssp THHHHHHHHHTTTCSEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHHHHHccCcEEEEEe-CCChHHHHHHHHHHHHHHHcCCEE
Confidence 466777778888888875432 23333 468899999999999865
No 130
>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}
Probab=42.12 E-value=36 Score=25.76 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=28.9
Q ss_pred HHHhhCCCCEEEEecCCCc----------chhhHHHHHHHHHHHcCccc
Q 033650 75 ERLLLKDIPAVSVFLKREQ----------RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 75 ~ra~e~gI~~v~~d~r~~~----------~yhGrv~a~~~~lre~Gl~~ 113 (114)
++..++|+..|.+.| +.. ..-.||+++.++.++.|+.|
T Consensus 99 ~~l~~aGaagv~iED-~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~ 146 (275)
T 2ze3_A 99 EHFAALGVAGVNLED-ATGLTPTELYDLDSQLRRIEAARAAIDASGVPV 146 (275)
T ss_dssp HHHHHTTCSEEEEEC-BCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHcCCcEEEECC-CcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCe
Confidence 344458999999986 432 35679999999999889876
No 131
>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1
Probab=41.55 E-value=10 Score=28.16 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCC-cchhhHHHHHHHHHHHcCcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKRE-QRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~-~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
-+|++-+.-+++.|++.|.+-- +- ..+.+.+..+++.+.+.||+.|
T Consensus 72 ~TGeis~~~l~~~Ga~~Vllgh-seRR~~~~e~~~k~~~A~~~GL~~i 118 (226)
T 1w0m_A 72 HTAHVSLENIKEAGGSGVILNH-SEAPLKLNDLARLVAKAKSLGLDVV 118 (226)
T ss_dssp CTTCCBHHHHHHHTCCEEEECC-TTSCCBHHHHHHHHHHHHHTTCEEE
T ss_pred ccCCCCHHHHHHcCCCEEEEee-eeccCCHHHHHHHHHHHHHCCCEEE
Confidence 3788888899999999987652 22 2567789999999999999753
No 132
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=41.38 E-value=51 Score=23.10 Aligned_cols=49 Identities=6% Similarity=0.070 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCccc
Q 033650 62 DVAAASKIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~~ 113 (114)
|..+++..++.|.++.. |..++.+- .|.. ....|...|.+++++.|+++
T Consensus 105 ~~~~g~~a~~~L~~~g~--g~~~I~~i-~g~~~~~~~~~R~~Gf~~al~~~g~~~ 156 (271)
T 2dri_A 105 NVLGGKIAGDYIAKKAG--EGAKVIEL-QGIAGTSAARERGEGFQQAVAAHKFNV 156 (271)
T ss_dssp HHHHHHHHHHHHHHHHC--TTCEEEEE-ECCTTCHHHHHHHHHHHHHHHHHTCEE
T ss_pred hHHHHHHHHHHHHHHcC--CCCeEEEE-ECCCCCccHhHHHHHHHHHHhcCCCEE
Confidence 44555555555555432 44566544 2321 23469999999999999864
No 133
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=41.36 E-value=52 Score=22.72 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 72 LLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
.+++.|.++|.+.+.+... . ....+..+.+.+++.|+++
T Consensus 68 ~~~~~~~~~Gad~v~v~~~-~--~~~~~~~~~~~~~~~g~~~ 106 (211)
T 3f4w_A 68 FESQLLFDAGADYVTVLGV-T--DVLTIQSCIRAAKEAGKQV 106 (211)
T ss_dssp HHHHHHHHTTCSEEEEETT-S--CHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHhcCCCEEEEeCC-C--ChhHHHHHHHHHHHcCCeE
Confidence 4588899999999887642 2 1245688888888888764
No 134
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=41.14 E-value=46 Score=24.13 Aligned_cols=44 Identities=20% Similarity=0.272 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhC-CCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 69 IGKLLGERLLLK-DIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~-gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
.+..+++-+.+. |.+++.+-. ....| ..+...|.+++.+.|+++
T Consensus 124 ~~~~~~~~l~~~~g~~~iaii~-~~~~~~~~~~~~~~~~l~~~g~~v 169 (356)
T 3ipc_A 124 QGGIAGKYLADHFKDAKVAIIH-DKTPYGQGLADETKKAANAAGVTE 169 (356)
T ss_dssp HHHHHHHHHHHHCTTCCEEEEE-CSSHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEEe-CCChHHHHHHHHHHHHHHHcCCEE
Confidence 445555555554 888875542 33333 468899999999999875
No 135
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=41.10 E-value=16 Score=29.82 Aligned_cols=40 Identities=18% Similarity=0.268 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
.+++.|++.+.+.||+.+..-+ ++.+..|.+++.+.||++
T Consensus 12 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~i~~ 51 (566)
T 1ozh_A 12 HGADLVVSQLEAQGVRQVFGIP------GAKIDKVFDSLLDSSIRI 51 (566)
T ss_dssp CHHHHHHHHHHHHTCCEEEEEC------CTTTHHHHHHGGGSSSEE
T ss_pred cHHHHHHHHHHHCCCCEEEEcC------CCchHHHHHHHHhCCCcE
Confidence 4688999999999999986554 345777888887667765
No 136
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=41.05 E-value=44 Score=24.04 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHHHhh---CCCCEEEEecCCCc---chhhHHHHHHHHHHHc
Q 033650 61 RDVAAASKIGKLLGERLLL---KDIPAVSVFLKREQ---RYHGKVKAIIDSLREA 109 (114)
Q Consensus 61 ~n~~AA~~vG~~la~ra~e---~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~ 109 (114)
.|..+++..++.|.+.+.+ .|..++.+- .+.. ....|...|.+++.+.
T Consensus 107 D~~~~g~~a~~~l~~~~~~~~~~G~~~i~~i-~g~~~~~~~~~R~~Gf~~al~~~ 160 (330)
T 3uug_A 107 DNFQVGVLQATSITDKLGLKDGKGPFNIELF-GGSPDDNNAFFFYDGAMSVLKPY 160 (330)
T ss_dssp CHHHHHHHHHHHHHHHHTGGGTCCCEEEEEC-BCCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCceEEEEE-ECCCCCchHHHHHHHHHHHHHhc
Confidence 3566777777777776665 488888665 2322 2346899999999987
No 137
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=40.95 E-value=37 Score=25.06 Aligned_cols=39 Identities=8% Similarity=-0.052 Sum_probs=29.8
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+.++++|.++|++.+++-| -. ...+..+.+.+++.|+++
T Consensus 112 ~~f~~~~~~aG~dgvii~d-l~---~ee~~~~~~~~~~~gl~~ 150 (262)
T 2ekc_A 112 EKFCRLSREKGIDGFIVPD-LP---PEEAEELKAVMKKYVLSF 150 (262)
T ss_dssp HHHHHHHHHTTCCEEECTT-CC---HHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCEEEECC-CC---HHHHHHHHHHHHHcCCcE
Confidence 5678889999999876542 22 256889999999999874
No 138
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=40.89 E-value=34 Score=27.95 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-CcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~~ 114 (114)
.+++.|++.+.+.||+.+..-+ ++.+..|.+++.+. +|+++
T Consensus 13 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~i~~i 54 (590)
T 1ybh_A 13 KGADILVEALERQGVETVFAYP------GGASMEIHQALTRSSSIRNV 54 (590)
T ss_dssp EHHHHHHHHHHTTTCCEEEECC------CGGGHHHHHHHHHCSSCEEC
T ss_pred cHHHHHHHHHHHcCCCEEEEcC------CCchHHHHHHHhccCCccEE
Confidence 4789999999999999985443 46678899998764 57754
No 139
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=40.79 E-value=42 Score=24.57 Aligned_cols=44 Identities=14% Similarity=0.209 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCC--cchhhHHHHHHHHHHHcCc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKRE--QRYHGKVKAIIDSLREAGV 111 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~--~~yhGrv~a~~~~lre~Gl 111 (114)
+.-|+.+++.+.+.|..++.|-. +. .....|...|.++++++|+
T Consensus 163 ~~~~~~a~~~L~~~G~~~I~~i~-~~~~~~~~~R~~Gf~~al~~~g~ 208 (339)
T 3h5o_A 163 EDAGAAITRHLLSRGKRRIGFLG-AQLDERVMKRLDGYRAALDAADC 208 (339)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEE-ESCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCeEEEEe-CCCCccHHHHHHHHHHHHHHCCC
Confidence 34456666677778999876552 32 2234689999999999998
No 140
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=40.46 E-value=28 Score=28.31 Aligned_cols=41 Identities=7% Similarity=0.057 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHH-cCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLRE-AGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre-~Gl~~ 113 (114)
..+++.|++.+.+.||+.+..-+ ++.+-.|.|++.+ .++++
T Consensus 8 ~~~a~~lv~~L~~~GV~~vFg~P------G~~~~~l~dal~~~~~i~~ 49 (556)
T 3hww_A 8 RRWAAVILEALTRHGVRHICIAP------GSRSTLLTLAAAENSAFIH 49 (556)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECC------CTTSHHHHHHHHHCTTCEE
T ss_pred hHHHHHHHHHHHHCCCCEEEEcC------CCCcHHHHHHHhhCCCceE
Confidence 46899999999999999985443 4556778888865 46654
No 141
>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*
Probab=40.33 E-value=52 Score=23.25 Aligned_cols=41 Identities=12% Similarity=0.139 Sum_probs=29.3
Q ss_pred HHHHHhhCCCCEEEEecCCCcch------hhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRY------HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~y------hGrv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.+.++......+ ...+..+.+.+.+.||.+
T Consensus 17 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 63 (285)
T 1qtw_A 17 AAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTS 63 (285)
T ss_dssp HHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCCEEEeeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 35678889999998753222211 157889999999999973
No 142
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=39.43 E-value=18 Score=29.38 Aligned_cols=40 Identities=20% Similarity=0.201 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-Cccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~ 113 (114)
.+++.|++.+.+.||+.+..-+ ++.+..|++++.+. +|++
T Consensus 4 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~i~~ 44 (566)
T 2vbi_A 4 TVGMYLAERLVQIGLKHHFAVA------GDYNLVLLDQLLLNKDMKQ 44 (566)
T ss_dssp BHHHHHHHHHHHHTCSEEEECC------CTTTHHHHHHHHTCTTSEE
T ss_pred CHHHHHHHHHHHcCCCEEEeCC------CCccHHHHHHHhcCCCCeE
Confidence 3688999999999999985443 45677788888775 6765
No 143
>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7
Probab=39.32 E-value=28 Score=24.79 Aligned_cols=40 Identities=18% Similarity=0.016 Sum_probs=28.3
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+.|.+.|+..+++.. |.+.....+..+++.+.+.|+.+
T Consensus 89 ~i~~A~~lGa~~v~~~~-g~~~~~~~l~~l~~~a~~~Gv~l 128 (264)
T 1yx1_A 89 TLRRAEACGAGWLKVSL-GLLPEQPDLAALGRRLARHGLQL 128 (264)
T ss_dssp HHHHHHHTTCSEEEEEE-ECCCSSCCHHHHHHHHTTSSCEE
T ss_pred HHHHHHHcCCCEEEEec-CCCCcHHHHHHHHHHHHhcCCEE
Confidence 45667778888887764 44433346888888888888875
No 144
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}
Probab=39.22 E-value=48 Score=23.50 Aligned_cols=44 Identities=9% Similarity=-0.010 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCc---chhhHHHHHHHHHHHcCcc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQ---RYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~Gl~ 112 (114)
..|+.+++.+.+.|..++.|- .+.. ....|...|.+++++.|++
T Consensus 124 ~~~~~a~~~L~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~~l~~~g~~ 170 (293)
T 2iks_A 124 DDAEMLAEELRKFPAETVLYL-GALPELSVSFLREQGFRTAWKDDPRE 170 (293)
T ss_dssp HHHHHHHHHHHTSCCSSEEEE-EECTTSHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHCCCCEEEEE-ecCcccccHHHHHHHHHHHHHHcCCC
Confidence 446666777777898887654 2321 2346999999999999963
No 145
>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*
Probab=39.14 E-value=61 Score=22.93 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=29.1
Q ss_pred HHHHHhhCCCCEEEEecCCCcchh-hHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYH-GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yh-Grv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.|.+.......+. ..+..+.+.+.+.||.+
T Consensus 22 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~ 63 (290)
T 2qul_A 22 TAKRIAGLGFDLMEISLGEFHNLSDAKKRELKAVADDLGLTV 63 (290)
T ss_dssp HHHHHHHTTCSEEEEESTTGGGSCHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHhCCCEEEEecCCccccchhhHHHHHHHHHHcCCce
Confidence 456677889999987742222211 57889999999999875
No 146
>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}
Probab=38.89 E-value=41 Score=25.41 Aligned_cols=42 Identities=14% Similarity=0.111 Sum_probs=30.1
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.-+++.|.++|+..+++.. .++.-++ ...+.+.+++.|+.++
T Consensus 85 ~~~v~ea~~~Gi~~vVi~t-~G~~~~~-~~~l~~~A~~~gi~vi 126 (297)
T 2yv2_A 85 PDAVYEAVDAGIRLVVVIT-EGIPVHD-TMRFVNYARQKGATII 126 (297)
T ss_dssp HHHHHHHHHTTCSEEEECC-CCCCHHH-HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHCCCCEEEEEC-CCCCHHH-HHHHHHHHHHcCCEEE
Confidence 4566778889999877763 5654333 6778888899998653
No 147
>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}
Probab=38.53 E-value=51 Score=23.08 Aligned_cols=44 Identities=11% Similarity=0.038 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhC-C-CCEEEEecCCC--c-chhhHHHHHHHHHHHcCcc
Q 033650 68 KIGKLLGERLLLK-D-IPAVSVFLKRE--Q-RYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 68 ~vG~~la~ra~e~-g-I~~v~~d~r~~--~-~yhGrv~a~~~~lre~Gl~ 112 (114)
..|+.+++.+.+. | ..++.+- .+. . ....|...|.+++++.|+.
T Consensus 115 ~~g~~~~~~L~~~~G~~~~i~~i-~~~~~~~~~~~R~~gf~~~l~~~g~~ 163 (289)
T 3brs_A 115 QAGIRIGAVTKNLVRKSGKIGVI-SFVKNSKTAMDREEGLKIGLSDDSNK 163 (289)
T ss_dssp HHHHHHHHHHHHHTSSSCEEEEE-ESCTTSHHHHHHHHHHHHHHGGGGGG
T ss_pred HHHHHHHHHHHHHcCCCceEEEE-ECCCCCccHHHHHHHHHHHHHhCCCc
Confidence 3455555555554 6 8887655 232 1 2356999999999999975
No 148
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=38.42 E-value=33 Score=26.21 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=29.7
Q ss_pred HHHHhhCCCCEEEEe----cCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 74 GERLLLKDIPAVSVF----LKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 74 a~ra~e~gI~~v~~d----~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
-+.+++.|++.+.+. +.+++-.-..+..+++.+++.||+++
T Consensus 33 ~~ilk~~G~n~vRlri~v~P~~g~~d~~~~~~~~~~ak~~Gl~v~ 77 (334)
T 1fob_A 33 ETILADAGINSIRQRVWVNPSDGSYDLDYNLELAKRVKAAGMSLY 77 (334)
T ss_dssp HHHHHHHTCCEEEEEECSCCTTCTTCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHcCCCEEEEEEEECCCCCccCHHHHHHHHHHHHHCCCEEE
Confidence 355667899998763 23343334678899999999999874
No 149
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=38.35 E-value=44 Score=25.09 Aligned_cols=41 Identities=17% Similarity=0.221 Sum_probs=29.5
Q ss_pred HHHHHHhhCCCCEEEEecCCCcchh-------------hHHHHHHHHHHHcCccc
Q 033650 72 LLGERLLLKDIPAVSVFLKREQRYH-------------GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~yh-------------Grv~a~~~~lre~Gl~~ 113 (114)
.-.++|.++|++.|.+++ +....| .++...++.+++.|+++
T Consensus 87 ~~i~~a~~aG~~~v~i~~-~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V 140 (302)
T 2ftp_A 87 KGFEAALESGVKEVAVFA-AASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRV 140 (302)
T ss_dssp HHHHHHHHTTCCEEEEEE-ESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHhCCcCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 356788899999998764 443333 35677888888998864
No 150
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=38.35 E-value=61 Score=23.89 Aligned_cols=50 Identities=6% Similarity=-0.077 Sum_probs=34.7
Q ss_pred CCHHHHHHHHHHHHHHHhhCCC-CEEEEecCCCc--chhhHHHHHHHHHHHcCcc
Q 033650 61 RDVAAASKIGKLLGERLLLKDI-PAVSVFLKREQ--RYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 61 ~n~~AA~~vG~~la~ra~e~gI-~~v~~d~r~~~--~yhGrv~a~~~~lre~Gl~ 112 (114)
.+.++++..| .+|..+.+.|. .++-|- .+.. .-.-|+..|.+++++.|++
T Consensus 108 d~~~~~~lag-~~a~~l~~~Gh~r~Ig~i-~g~~~~~~~~r~~Gf~~~~~~~~~~ 160 (318)
T 2fqx_A 108 GQNEGSFLVG-VAAALKAKEAGKSAVGFI-VGMELGMMPLFEAGFEAGVKAVDPD 160 (318)
T ss_dssp CHHHHHHHHH-HHHHHHHHHTTCCEEEEE-ESCCSTTTHHHHHHHHHHHHHHCTT
T ss_pred chHHHHHHHH-HHHHHHhccCCCcEEEEE-eCcccHHHHHHHHHHHHHHHHHCCC
Confidence 3567888888 55667778887 666443 2321 2346899999999999975
No 151
>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1
Probab=38.33 E-value=43 Score=25.17 Aligned_cols=42 Identities=10% Similarity=0.134 Sum_probs=30.5
Q ss_pred HHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 70 GKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 70 G~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
..-+++.|.++|+..+++.. .++.-+. ...+.+.+++.|+.+
T Consensus 77 ~~~~~~ea~~~Gi~~vVi~t-~G~~~~~-~~~l~~~a~~~gi~v 118 (288)
T 1oi7_A 77 AADAALEAAHAGIPLIVLIT-EGIPTLD-MVRAVEEIKALGSRL 118 (288)
T ss_dssp HHHHHHHHHHTTCSEEEECC-SCCCHHH-HHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHCCCCEEEEEC-CCCCHHH-HHHHHHHHHHcCCEE
Confidence 34567788899999877763 5655443 567888889999865
No 152
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=38.08 E-value=59 Score=23.95 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
..++.+++-+.+.|.+++.+-. ..+.| .+....|.+.+.+.|+++
T Consensus 128 ~~~~~~~~~l~~~g~~~vaii~-~~~~~g~~~~~~~~~~~~~~G~~v 173 (379)
T 3n0w_A 128 SIVKTVVQAQLAKGYKTWFLML-PDAAYGDLMNAAIRRELTAGGGQI 173 (379)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHHcCCcEEEEEe-cccchhHHHHHHHHHHHHHcCCEE
Confidence 4456666777777999875542 23333 358899999999999875
No 153
>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}
Probab=38.02 E-value=1e+02 Score=21.67 Aligned_cols=43 Identities=7% Similarity=-0.039 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhh-CCCC-EEEEecCCCc---chhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLL-KDIP-AVSVFLKREQ---RYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e-~gI~-~v~~d~r~~~---~yhGrv~a~~~~lre~G 110 (114)
+..|+.+++.+.+ .|.. ++.+- .+.. ....|...|.+++++.|
T Consensus 110 ~~~g~~a~~~l~~~~g~~~~i~~i-~g~~~~~~~~~R~~gf~~~l~~~~ 157 (303)
T 3d02_A 110 EKFAAEYVEHMAKRMGGKGGYVIY-VGSLTVPQHNLWADLLVKYQKEHY 157 (303)
T ss_dssp HHHHHHHHHHHHHHTTTCEEEEEE-CSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCcCceEEEE-ecCCCCccHHHHHHHHHHHHHhhC
Confidence 3455666666666 6876 76555 2322 23469999999999876
No 154
>2yxo_A Histidinol phosphatase; metal-dependent, hydrolase; 1.60A {Thermus thermophilus} PDB: 2yz5_A 2z4g_A
Probab=37.96 E-value=51 Score=23.37 Aligned_cols=20 Identities=15% Similarity=-0.056 Sum_probs=17.0
Q ss_pred HHHHHHhhCCCCEEEEecCC
Q 033650 72 LLGERLLLKDIPAVSVFLKR 91 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~ 91 (114)
.++++|.+.|++.+.+-|..
T Consensus 20 e~v~~A~~~Gl~~iaiTDH~ 39 (267)
T 2yxo_A 20 AYLEEARAKGLKGVVFTDHS 39 (267)
T ss_dssp HHHHHHHHTTCSEEEEEEEC
T ss_pred HHHHHHHHcCCCEEEEcCCC
Confidence 57899999999999887643
No 155
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=37.92 E-value=22 Score=25.50 Aligned_cols=35 Identities=11% Similarity=0.087 Sum_probs=22.6
Q ss_pred HHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 74 GERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 74 a~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
++...++||.+|+|-...... .+ ..+-|+++||++
T Consensus 137 a~aIi~agI~rVVy~~~~~~~-~~----~~~~L~~aGIeV 171 (184)
T 2hvw_A 137 TKALLQAGVKKITYNTAYRIH-PF----AIELMTQKEVEY 171 (184)
T ss_dssp HHHHHHHTEEEEEEEECCSCC-HH----HHHHHHHHTCEE
T ss_pred HHHHHHHCCCeEEEEecCCCC-HH----HHHHHHHCCCEE
Confidence 455667899999875311111 11 278899999986
No 156
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD; 2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A* 2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A* 1hl8_A* 1odu_A* 2wsp_A*
Probab=37.80 E-value=40 Score=27.35 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCCEEEEecCC--Cc--------ch--------hhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKR--EQ--------RY--------HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~--~~--------~y--------hGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.++++|.+.+++.-+- |+ .| .--|+.+++++|+.||+|
T Consensus 108 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~ns~~~~pkrDlv~El~~A~rk~Glk~ 168 (455)
T 2zxd_A 108 QEWADLFKKAGAKYVIPTTKHHDGFCLWGTKYTDFNSVKRGPKRDLVGDLAKAVREAGLRF 168 (455)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCSSCSCBTTTSTTCSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhCCCEEEEEeeccCCccccCCCCCCCcccccCCCCChHHHHHHHHHHcCCeE
Confidence 567899999999999875320 10 11 246999999999999987
No 157
>3a5v_A Alpha-galactosidase; beta/alpha barrel, N-glycosylation, hydrolase; HET: MAN NAG BMA 1PG; 2.00A {Umbelopsis vinacea}
Probab=37.55 E-value=40 Score=26.53 Aligned_cols=52 Identities=17% Similarity=0.140 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHH-HHhhCCCCEEEEecCCCc---------------chhhHHHHHHHHHHHcCccc
Q 033650 61 RDVAAASKIGKLLGE-RLLLKDIPAVSVFLKREQ---------------RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 61 ~n~~AA~~vG~~la~-ra~e~gI~~v~~d~r~~~---------------~yhGrv~a~~~~lre~Gl~~ 113 (114)
-|.+........+++ .+++.|++-+++|+ |=+ ++-.-++++++-+++.|++|
T Consensus 23 ~~e~~i~~~ad~~~~~gl~~~G~~~~~iDd-gW~~~~r~~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~ 90 (397)
T 3a5v_A 23 VDEQLILDAAKAIASSGLKDLGYNYVIIDD-CWQKNERESSKTLLADPTKFPRGIKPLVDDIHNLGLKA 90 (397)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHTCCEEECCS-SCBCSSCCTTSCCCBCTTTCTTCHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHHcCCcccCceEEEECC-CcCCCCCCCCCCeEEChhcCCcCHHHHHHHHHHcCCEE
Confidence 456666666666666 44558999999996 311 23224999999999999987
No 158
>3cc1_A BH1870 protein, putative alpha-N-acetylgalactosaminidase; structural genomic center for structural genomics, JCSG; HET: MSE PGE PG4 P33; 2.00A {Bacillus halodurans c-125}
Probab=37.23 E-value=59 Score=25.86 Aligned_cols=53 Identities=13% Similarity=0.191 Sum_probs=40.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCC----------------------------cchhh-----HHHHHHHHH
Q 033650 60 TRDVAAASKIGKLLGERLLLKDIPAVSVFLKRE----------------------------QRYHG-----KVKAIIDSL 106 (114)
Q Consensus 60 ~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~----------------------------~~yhG-----rv~a~~~~l 106 (114)
.-|.+........+++..++.|++-+++|+ += .++-+ -++++++.+
T Consensus 25 ~i~e~~i~~~ad~~~~gl~~~G~~~~~iDD-gW~~~~~~~~~y~~~~~~~~d~~G~~~~~~~kFP~~~~~~Gl~~l~~~i 103 (433)
T 3cc1_A 25 SVTEEEVLGNAEYMANHLKKYGWEYIVVDI-QWYEPTANSSAYNPFAPLCMDEYGRLLPATNRFPSAKNGAGFKPLSDAI 103 (433)
T ss_dssp CCCHHHHHHHHHHHHHHTGGGTCCEEEECS-CTTCCCTTSTTCCTTSCSCBCTTSCBCCCTTTCGGGTTTTTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcchhhCCeEEEECC-CcCCCCCcccccccccccccCCCCCEeECCccCCCcccCCCHHHHHHHH
Confidence 356666777777778888999999999997 21 11222 499999999
Q ss_pred HHcCccc
Q 033650 107 REAGVKL 113 (114)
Q Consensus 107 re~Gl~~ 113 (114)
++.|++|
T Consensus 104 h~~Glk~ 110 (433)
T 3cc1_A 104 HDLGLKF 110 (433)
T ss_dssp HHTTCEE
T ss_pred HHcCCee
Confidence 9999987
No 159
>1szn_A Alpha-galactosidase; (beta/alpha)8 barrel,TWO domains, glycoprotein, hydrolase; HET: NAG BMA MAN; 1.54A {Hypocrea jecorina} SCOP: b.71.1.1 c.1.8.1 PDB: 1t0o_A*
Probab=37.11 E-value=37 Score=27.00 Aligned_cols=52 Identities=17% Similarity=0.155 Sum_probs=35.8
Q ss_pred CCHHHHHHHHHHHH-HHHhhCCCCEEEEecCCC---------------cchhhHHHHHHHHHHHcCccc
Q 033650 61 RDVAAASKIGKLLG-ERLLLKDIPAVSVFLKRE---------------QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 61 ~n~~AA~~vG~~la-~ra~e~gI~~v~~d~r~~---------------~~yhGrv~a~~~~lre~Gl~~ 113 (114)
-|.+........++ .-+++.|++-+++|+ |= .++-.-++++++-+++.|++|
T Consensus 26 ~~e~~i~~~ad~~~~~gl~~~G~~~~~iDd-gW~~~~~d~~G~~~~~~~kFP~Gl~~l~~~i~~~Glk~ 93 (417)
T 1szn_A 26 IDESKFLSAAELIVSSGLLDAGYNYVNIDD-CWSMKDGRVDGHIAPNATRFPDGIDGLAKKVHALGLKL 93 (417)
T ss_dssp CCHHHHHHHHHHHHHTTHHHHTCCEEECCS-SCBCTTCCBTTBCCBCTTTCTTHHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHHcCchhhCCCEEEECC-CccCCCCCCCCCEEECcccCCcCHHHHHHHHHHcCCEE
Confidence 45555555554442 234778999999996 31 124345999999999999987
No 160
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*
Probab=36.89 E-value=35 Score=24.79 Aligned_cols=21 Identities=24% Similarity=0.238 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHhhCCCC
Q 033650 63 VAAASKIGKLLGERLLLKDIP 83 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~ 83 (114)
...+|.+|..+++.....|++
T Consensus 12 ~~~sY~~G~~~g~~l~~~~~~ 32 (213)
T 1fd9_A 12 DKLSYSIGADLGKNFKNQGID 32 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHhcCcc
Confidence 458999999999999888875
No 161
>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2
Probab=36.51 E-value=44 Score=24.67 Aligned_cols=26 Identities=19% Similarity=0.078 Sum_probs=19.8
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEec
Q 033650 61 RDVAAASKIGKLLGERLLLKDIPAVSVFL 89 (114)
Q Consensus 61 ~n~~AA~~vG~~la~ra~e~gI~~v~~d~ 89 (114)
.|++++. ++..+||+|.||+.+++--
T Consensus 26 eNT~~tl---~la~era~e~~Ik~iVVAS 51 (201)
T 1vp8_A 26 ENTEETL---RLAVERAKELGIKHLVVAS 51 (201)
T ss_dssp GGHHHHH---HHHHHHHHHHTCCEEEEEC
T ss_pred ccHHHHH---HHHHHHHHHcCCCEEEEEe
Confidence 4655544 5678999999999998873
No 162
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne metal-binding, phosphoprotein, structural genomics; HET: SEP; 2.30A {Francisella tularensis subsp}
Probab=36.48 E-value=1.2e+02 Score=24.15 Aligned_cols=53 Identities=30% Similarity=0.427 Sum_probs=37.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCC-EEEEecCCCcchhhH--HHHHHHHHHHcCcccC
Q 033650 60 TRDVAAASKIGKLLGERLLLKDIP-AVSVFLKREQRYHGK--VKAIIDSLREAGVKLL 114 (114)
Q Consensus 60 ~~n~~AA~~vG~~la~ra~e~gI~-~v~~d~r~~~~yhGr--v~a~~~~lre~Gl~~~ 114 (114)
.-|.+.+..+|..+|.-+.+.+-. .|++= .-.+.+|. -.|++.++..+|++++
T Consensus 18 ~lt~~~v~~~g~a~~~~l~~~~~~~~VvVG--~D~R~ss~~l~~a~~~gl~s~G~~V~ 73 (443)
T 3i3w_A 18 TITVEFTQKLGNAVGSLINQKNYPKFVIVG--QDTRSSGGFLKFALVSGLNAAGIDVL 73 (443)
T ss_dssp SBSHHHHHHHHHHHHHHHHHTTCCSEEEEE--ECSCTTHHHHHHHHHHHHHHHTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCeEEEE--eCCCcCHHHHHHHHHHHHHHCCCeEE
Confidence 457889999999999988776644 56543 12234554 4578899999998763
No 163
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=35.98 E-value=52 Score=23.64 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=24.3
Q ss_pred HHHHhhC-----CCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 74 GERLLLK-----DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 74 a~ra~e~-----gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
|+...++ ||..|+|--+-.+--.-.+..-++-|+++||++
T Consensus 98 a~aIi~al~~~~gI~rVV~~~~d~~~~~p~~~~g~~~L~~aGI~V 142 (190)
T 2nyt_A 98 ADRIIKTLSKTKNLRLLILVGRLFMWEEPEIQAALKKLKEAGCKL 142 (190)
T ss_pred HHHHHHhhhhcCCccEEEEEeecCCcCChHHHHHHHHHHHCCCEE
Confidence 4445556 999998732211100123556778899999986
No 164
>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}
Probab=35.90 E-value=63 Score=23.03 Aligned_cols=41 Identities=17% Similarity=0.156 Sum_probs=29.9
Q ss_pred HHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
..+++.+.|++.|.+.......+ ...+..+.+.+++.||++
T Consensus 26 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~~ 67 (290)
T 3tva_A 26 HLEVAQDLKVPTVQVHAPHPHTRTREHAQAFRAKCDAAGIQV 67 (290)
T ss_dssp CHHHHHHTTCSEEEEECCCGGGCSHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEEecCCCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 35677889999988774222212 457999999999999975
No 165
>3sql_A Glycosyl hydrolase family 3; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM-barrel, alpha-beta-alpha sandwich; HET: MSE; 2.25A {Synechococcus SP} PDB: 3sqm_A*
Probab=35.84 E-value=23 Score=29.56 Aligned_cols=48 Identities=23% Similarity=0.152 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHhhCCCCEE---EEe----cCCC---cchhh--------HHHHHHHHHHHcCc
Q 033650 64 AAASKIGKLLGERLLLKDIPAV---SVF----LKRE---QRYHG--------KVKAIIDSLREAGV 111 (114)
Q Consensus 64 ~AA~~vG~~la~ra~e~gI~~v---~~d----~r~~---~~yhG--------rv~a~~~~lre~Gl 111 (114)
+.++.+|+.+|+.+++.||+-. ++| +|++ +++-| -..|+++|++++|+
T Consensus 125 ~La~~~G~~~a~Elra~Gin~~fAPvvDv~r~P~~g~ig~rsfGEDP~lv~~~a~A~v~GlQ~~gV 190 (535)
T 3sql_A 125 ALAETMGATTAQEALSLGINWVLAPVLDVNNNPHNPVINIRAFGETPDQVSALGTAFIRGAQQYAV 190 (535)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEECCCBCCCCCCTTCSSSGGGSSCSSHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCEEecCeeccCCCCCCCCccccCCCCCHHHHHHHHHHHHHHHhhccc
Confidence 5689999999999999999963 122 3333 22111 35789999999886
No 166
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=35.70 E-value=29 Score=26.24 Aligned_cols=39 Identities=8% Similarity=0.077 Sum_probs=26.5
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+.++++|.++|++.+++-| -+. .-...+.+.+++.||++
T Consensus 115 ~~f~~~~~~aGvdGvIipD-lp~---ee~~~~~~~~~~~gl~~ 153 (271)
T 3nav_A 115 DDFYQRCQKAGVDSVLIAD-VPT---NESQPFVAAAEKFGIQP 153 (271)
T ss_dssp HHHHHHHHHHTCCEEEETT-SCG---GGCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHCCCCEEEECC-CCH---HHHHHHHHHHHHcCCeE
Confidence 5578888888888865543 222 22667778888888764
No 167
>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*
Probab=35.48 E-value=58 Score=23.26 Aligned_cols=46 Identities=13% Similarity=0.131 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHh-hCCCCEEEEecCCCc---chhhHHHHHHHHHHHc----Cccc
Q 033650 67 SKIGKLLGERLL-LKDIPAVSVFLKREQ---RYHGKVKAIIDSLREA----GVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~-e~gI~~v~~d~r~~~---~yhGrv~a~~~~lre~----Gl~~ 113 (114)
+..|+.+++.+. +.|-.++.+- .+.. ....|...|.+++++. |+.+
T Consensus 107 ~~~g~~a~~~L~~~~G~~~i~~i-~g~~~~~~~~~R~~Gf~~~l~~~~~~~~~~~ 160 (313)
T 3m9w_A 107 EKVGELQAKALVDIVPQGNYFLM-GGSPVDNNAKLFRAGQMKVLKPYVDSGKIKV 160 (313)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEE-ESCTTCHHHHHHHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHHhCCCCcEEEE-ECCCCCccHHHHHHHHHHHHHhhccCCCEEE
Confidence 344555555555 5788888665 2322 2345899999999998 5654
No 168
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=35.46 E-value=52 Score=24.62 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCCEEEEecCCCcchh-------------hHHHHHHHHHHHcCccc
Q 033650 72 LLGERLLLKDIPAVSVFLKREQRYH-------------GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~yh-------------Grv~a~~~~lre~Gl~~ 113 (114)
.-.++|.+.|++.+.++. .....| .++...++.+++.|+++
T Consensus 84 ~~i~~a~~ag~~~v~i~~-~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v 137 (298)
T 2cw6_A 84 KGFEAAVAAGAKEVVIFG-AASELFTKKNINCSIEESFQRFDAILKAAQSANISV 137 (298)
T ss_dssp HHHHHHHHTTCSEEEEEE-ESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HhHHHHHHCCCCEEEEEe-cCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeE
Confidence 347888999999998875 443333 25667788888999865
No 169
>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A
Probab=35.36 E-value=63 Score=23.16 Aligned_cols=43 Identities=19% Similarity=0.384 Sum_probs=29.0
Q ss_pred HHHHHHHHhh-CCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 70 GKLLGERLLL-KDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 70 G~~la~ra~e-~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
++.+++-+.+ .|.+++.+-. +...| ..+...|.+++.+.|+++
T Consensus 125 ~~~~~~~l~~~~g~~~i~~i~-~~~~~~~~~~~~~~~~l~~~g~~v 169 (346)
T 1usg_A 125 GPTAAKYILETVKPQRIAIIH-DKQQYGEGLARSVQDGLKAANANV 169 (346)
T ss_dssp HHHHHHHHHHTTCCSSEEEEE-CSSHHHHHHHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhcCCCeEEEEE-CCCchHHHHHHHHHHHHHHcCCEE
Confidence 4556666655 4888875442 23333 368899999999999875
No 170
>1tg7_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family GH35, glycopr penicillium, hydrolase; HET: NAG BMA MAN; 1.90A {Penicillium SP} SCOP: b.149.1.1 b.18.1.27 b.18.1.27 b.71.1.5 c.1.8.14 PDB: 1xc6_A*
Probab=34.74 E-value=36 Score=30.46 Aligned_cols=43 Identities=23% Similarity=0.340 Sum_probs=34.0
Q ss_pred HHHHHHhhCCCCEEEEec--------CCCcchhhH--HHHHHHHHHHcCcccC
Q 033650 72 LLGERLLLKDIPAVSVFL--------KREQRYHGK--VKAIIDSLREAGVKLL 114 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~--------r~~~~yhGr--v~a~~~~lre~Gl~~~ 114 (114)
-..++++++|++.|.+.. .|.+-+.|. +..|++.++|+||.+|
T Consensus 40 d~l~kmka~G~NtV~~yvfW~~hEP~~G~fdF~g~~dL~~fl~~a~e~Gl~Vi 92 (971)
T 1tg7_A 40 DIFEKVKALGFNCVSFYVDWALLEGNPGHYSAEGIFDLQPFFDAAKEAGIYLL 92 (971)
T ss_dssp HHHHHHHTTTCCEEEEECCHHHHCSBTTBCCCCGGGCSHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHcCCCEEEEeccHHHhCCCCCeecccchHHHHHHHHHHHHcCCEEE
Confidence 457889999999997632 355666675 9999999999999864
No 171
>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}
Probab=33.85 E-value=33 Score=25.64 Aligned_cols=41 Identities=17% Similarity=0.051 Sum_probs=30.3
Q ss_pred HHHHHHhhCCCCEEEEecCCCc----------chhhHHHHHHHHHHHcCccc
Q 033650 72 LLGERLLLKDIPAVSVFLKREQ----------RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~----------~yhGrv~a~~~~lre~Gl~~ 113 (114)
-.+++..++|+..|.+.| +.+ .+-.||+++.++.++.|+.|
T Consensus 97 ~~~~~l~~aGa~gv~iEd-~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~ 147 (255)
T 2qiw_A 97 DLIAQILEAGAVGINVED-VVHSEGKRVREAQEHADYIAAARQAADVAGVDV 147 (255)
T ss_dssp HHHHHHHHTTCCEEEECS-EEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCCcEEEECC-CCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCe
Confidence 344555668999999886 321 35679999999998889875
No 172
>3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A*
Probab=33.72 E-value=92 Score=21.78 Aligned_cols=40 Identities=15% Similarity=0.328 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
.-+|..+|+++.+.|.+-+..+. .. ..+...+.+.+.+.|
T Consensus 14 ~gIG~~ia~~l~~~G~~V~~~~~-~~---~~~~~~~~~~~~~~~ 53 (246)
T 3osu_A 14 RGIGRSIALQLAEEGYNVAVNYA-GS---KEKAEAVVEEIKAKG 53 (246)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEES-SC---HHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHCCCEEEEEeC-CC---HHHHHHHHHHHHhcC
Confidence 35888888888888877665563 22 234445555555444
No 173
>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*
Probab=33.71 E-value=74 Score=22.44 Aligned_cols=41 Identities=5% Similarity=0.168 Sum_probs=28.8
Q ss_pred HHHHHhhCCCCEEEEecCCCcch------hhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRY------HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~y------hGrv~a~~~~lre~Gl~~ 113 (114)
..+++.+.|++.+.+.......+ ...+..+.+.+++.||++
T Consensus 17 ~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 63 (287)
T 2x7v_A 17 VPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGIDW 63 (287)
T ss_dssp HHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHHTCCG
T ss_pred HHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHcCCCc
Confidence 35677888999988764222111 247889999999999973
No 174
>4e8d_A Glycosyl hydrolase, family 35; TIM barrel, beta-propeller, glycohydrolase; 1.80A {Streptococcus pneumoniae} PDB: 4e8c_A
Probab=33.41 E-value=44 Score=28.39 Aligned_cols=43 Identities=12% Similarity=0.224 Sum_probs=32.8
Q ss_pred HHHHHHhhCCCCEEEEec--------CCCcchhh--HHHHHHHHHHHcCcccC
Q 033650 72 LLGERLLLKDIPAVSVFL--------KREQRYHG--KVKAIIDSLREAGVKLL 114 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~--------r~~~~yhG--rv~a~~~~lre~Gl~~~ 114 (114)
-..++++++|++.|.+.. +|.+-+.| -+..|++.++++||.+|
T Consensus 36 d~l~kmKa~G~NtV~~yv~W~~hEP~~G~fdF~g~~dL~~fl~~a~~~Gl~Vi 88 (595)
T 4e8d_A 36 HSLYNLKALGFNTVETYVAWNLHEPCEGEFHFEGDLDLEKFLQIAQDLGLYAI 88 (595)
T ss_dssp HHHHHHHHTTCCEEEEECCHHHHCSBTTBCCCSGGGCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHcCCCEEEEeccHHHcCCCCCeecccchhhHHHHHHHHHHcCCEEE
Confidence 457889999999997632 24444555 39999999999999764
No 175
>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}
Probab=33.39 E-value=51 Score=23.64 Aligned_cols=39 Identities=10% Similarity=-0.117 Sum_probs=28.6
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.|.+.. ...+...+..+.+.+.+.||.+
T Consensus 46 ~l~~~~~~G~~~vEl~~--~~~~~~~~~~~~~~l~~~gl~~ 84 (290)
T 2zvr_A 46 GMELAKRVGYQAVEIAV--RDPSIVDWNEVKILSEELNLPI 84 (290)
T ss_dssp HHHHHHHHTCSEEEEEC--SCGGGSCHHHHHHHHHHHTCCE
T ss_pred HHHHHHHhCCCEEEEcC--CCcchhhHHHHHHHHHHcCCeE
Confidence 44567788999988773 2223456888999999999976
No 176
>1tuo_A Putative phosphomannomutase; thermus thermophilus HB8, biosynthesis of alginate, structural genomics; 1.70A {Thermus thermophilus}
Probab=33.25 E-value=1.6e+02 Score=23.42 Aligned_cols=54 Identities=20% Similarity=0.281 Sum_probs=39.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhH--HHHHHHHHHHcCccc
Q 033650 58 GCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGK--VKAIIDSLREAGVKL 113 (114)
Q Consensus 58 ~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGr--v~a~~~~lre~Gl~~ 113 (114)
+..-|.+.+.++|..+|.-+.+.|-..|++= .-.++++. -.+++.++..+|+++
T Consensus 24 ~~~lt~~~v~~~~~a~~~~l~~~~~~~VvVG--~D~R~ss~~~~~a~a~gl~~~G~~V 79 (464)
T 1tuo_A 24 AREFTFATLHRLAEAYGRHLLERGGGLVVVG--HDTRFLADAFARALSGHLAGMGLKV 79 (464)
T ss_dssp TTTBCHHHHHHHHHHHHHHHHHTTCCEEEEE--ECSSTTHHHHHHHHHHHHHHHTCEE
T ss_pred CCCcCHHHHHHHHHHHHHHHHHhCCCeEEEe--eCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 3345888999999999999988763455443 12244554 578999999999986
No 177
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=33.08 E-value=36 Score=22.80 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=18.4
Q ss_pred HHHHHHHHHHhhC-CCCEEEEe
Q 033650 68 KIGKLLGERLLLK-DIPAVSVF 88 (114)
Q Consensus 68 ~vG~~la~ra~e~-gI~~v~~d 88 (114)
.+|..+|+.+.+. |.+-+++|
T Consensus 49 ~~G~~~a~~L~~~~g~~V~vid 70 (183)
T 3c85_A 49 RIGTGAYDELRARYGKISLGIE 70 (183)
T ss_dssp HHHHHHHHHHHHHHCSCEEEEE
T ss_pred HHHHHHHHHHHhccCCeEEEEE
Confidence 6899999999998 99887778
No 178
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase family 29; 1.73A {Bacteroides thetaiotaomicron} PDB: 2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Probab=33.03 E-value=53 Score=26.50 Aligned_cols=43 Identities=12% Similarity=0.209 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCCEEEEecC---C------Cc-ch--------hhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLK---R------EQ-RY--------HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r---~------~~-~y--------hGrv~a~~~~lre~Gl~~ 113 (114)
+..|+.++++|.+.+++--+ | .+ .| .--|+.+++++|+.||+|
T Consensus 81 ~~Wa~~~k~AGakyvvlTaKHHDGF~lwpSk~t~~n~~~~~~krDlv~el~~A~rk~Glk~ 141 (450)
T 2wvv_A 81 KKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYTKYTVANTPYKRDILGELVKAYNDEGIDV 141 (450)
T ss_dssp HHHHHHHHHHTCSEEEEEEECTTCCBSSCCTTCSCBGGGSTTCSCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCcEEEEEEeecCCccccCCCCCCCccccCCCCCChHHHHHHHHHHcCCeE
Confidence 46788899999999987532 1 00 01 247999999999999987
No 179
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=32.94 E-value=70 Score=23.52 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 66 ASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 66 A~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
+.=+|+.+|+++.+.|-+-+..| |. ..+.+.+++.+++.|-+
T Consensus 16 s~GIG~aiA~~la~~Ga~Vv~~~-~~----~~~~~~~~~~i~~~g~~ 57 (254)
T 4fn4_A 16 GSGIGRAIAKKFALNDSIVVAVE-LL----EDRLNQIVQELRGMGKE 57 (254)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SC----HHHHHHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHHHcCCEEEEEE-CC----HHHHHHHHHHHHhcCCc
Confidence 34588888888888888766555 43 34567777777776643
No 180
>4acy_A Endo-alpha-mannosidase; hydrolase, endomannosidase, glycoside hydrolase, CAZY, enzyme-carbohydrate interaction, mannose; HET: MSE; 1.69A {Bacteroides thetaiotaomicron} PDB: 4acz_A 4ad0_A* 4acz_B
Probab=32.86 E-value=27 Score=27.75 Aligned_cols=40 Identities=15% Similarity=0.112 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCEEEEecCCC--cchhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKRE--QRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~--~~yhGrv~a~~~~lre~Gl~~ 113 (114)
=-+.|+++||+.+.++ +.+ ......+..+++++.+.|++|
T Consensus 108 hi~~ak~aGIDgfal~-w~~~~~~~d~~l~~~~~aA~~~g~k~ 149 (382)
T 4acy_A 108 HIRMHIKANVGVLSVT-WWGESDYGNQSVSLLLDEAAKVGAKV 149 (382)
T ss_dssp HHHHHHHHTEEEEEEE-ECGGGGTTCHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHcCCCEEEEE-ecCCCCchHHHHHHHHHHHHHcCCEE
Confidence 3456788899999988 443 234567999999999999886
No 181
>4gvf_A Beta-hexosaminidase; TIM-barrel, hydrolase; HET: NDG NAG MES; 1.35A {Salmonella enterica subsp} PDB: 4gvg_A* 4gvh_A* 4gvi_A*
Probab=32.26 E-value=1e+02 Score=24.05 Aligned_cols=48 Identities=25% Similarity=0.417 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHhhCCCCEE---EEec-C-C---Ccc-hh------h-HHHHHHHHHHHcCc
Q 033650 64 AAASKIGKLLGERLLLKDIPAV---SVFL-K-R---EQR-YH------G-KVKAIIDSLREAGV 111 (114)
Q Consensus 64 ~AA~~vG~~la~ra~e~gI~~v---~~d~-r-~---~~~-yh------G-rv~a~~~~lre~Gl 111 (114)
+.++..|+++|+.+++.||+-. ++|. | + +++ |+ + -..|+++|++++|+
T Consensus 95 ~la~~~g~~~a~Elra~Gin~~faPv~Dv~r~~~~ig~rsfgeDP~lv~~~a~a~v~Glq~~GV 158 (349)
T 4gvf_A 95 RLAQEAGWLMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPAKALAMATRFIDGMHDAGM 158 (349)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEECCCBCCCCSCCTTTGGGSSCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHcCCCEEecCcccCCCCCCCCcCcCCCCCHHHHHHHHHHHHHHHHHcCc
Confidence 7899999999999999999963 2333 1 1 122 21 1 35789999999987
No 182
>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}
Probab=32.09 E-value=1e+02 Score=22.57 Aligned_cols=40 Identities=8% Similarity=-0.005 Sum_probs=29.2
Q ss_pred HHHHHhhCCCCEEEEecCCCcchh-----hHHHHHHHHHHHcCcc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYH-----GKVKAIIDSLREAGVK 112 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yh-----Grv~a~~~~lre~Gl~ 112 (114)
..+.+.+.|++.|.+.......+. ..+..+.+.+.+.||.
T Consensus 36 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~l~~~gL~ 80 (335)
T 2qw5_A 36 HIKKLQRFGYSGFEFPIAPGLPENYAQDLENYTNLRHYLDSEGLE 80 (335)
T ss_dssp HHHHHHHTTCCEEEEECCCCCGGGHHHHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhCCCEEEEecCCCcccccccchHHHHHHHHHHHHCCCC
Confidence 456678899999887642232222 5688999999999997
No 183
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold, phosphohexomutase; 2.70A {Bacillus anthracis}
Probab=31.98 E-value=1.3e+02 Score=24.10 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=38.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHhhC-CCCEEEEecCCCcchhhH--HHHHHHHHHHcCcccC
Q 033650 57 IGCTRDVAAASKIGKLLGERLLLK-DIPAVSVFLKREQRYHGK--VKAIIDSLREAGVKLL 114 (114)
Q Consensus 57 l~~~~n~~AA~~vG~~la~ra~e~-gI~~v~~d~r~~~~yhGr--v~a~~~~lre~Gl~~~ 114 (114)
.+..-|.+.+..+|..+|.-+.+. +-..|++= .-.++.|. -.+++.++..+|++++
T Consensus 35 ~~~~lt~~~v~~~g~a~~~~l~~~~~~~~VvIG--~D~R~ss~~~~~a~a~gl~s~Gi~V~ 93 (469)
T 3pdk_A 35 ANKELTPELAFKIGRFGGYVLTKDTDRPKVIIG--RDTRISGHMLEGALVAGLLSTGAEVM 93 (469)
T ss_dssp BTTTBCHHHHHHHHHHHHHHHHTTCSSCEEEEE--ECSCTTHHHHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEE--eCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 344568899999999999988763 33455443 12234453 5688899999999863
No 184
>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*
Probab=31.98 E-value=48 Score=25.17 Aligned_cols=44 Identities=9% Similarity=0.110 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-CcccC
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKLL 114 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~~ 114 (114)
...-+++.|.++||..++++- .|...+. ...+.+.+++. |+.++
T Consensus 83 ~~~~~~~e~i~~Gi~~iv~~t-~G~~~~~-~~~l~~~a~~~~gi~li 127 (305)
T 2fp4_A 83 FAAAAINEAIDAEVPLVVCIT-EGIPQQD-MVRVKHRLLRQGKTRLI 127 (305)
T ss_dssp HHHHHHHHHHHTTCSEEEECC-CCCCHHH-HHHHHHHHTTCSSCEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEC-CCCChHH-HHHHHHHHHhcCCcEEE
Confidence 445667888899999977773 4554432 45788888998 88753
No 185
>3rrx_A EXO-1,3/1,4-beta-glucanase; (alpha/beta)8 barrel,(alpha/beta)6 sheet, hydrolase; 1.90A {Pseudoalteromonas SP} PDB: 3usz_A 3f93_A 3f94_A 3ut0_A
Probab=31.83 E-value=28 Score=30.62 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=36.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCEE---EE----ecCCC--cc-hh------h-HHHHHHHHHHHc
Q 033650 58 GCTRDVAAASKIGKLLGERLLLKDIPAV---SV----FLKRE--QR-YH------G-KVKAIIDSLREA 109 (114)
Q Consensus 58 ~~~~n~~AA~~vG~~la~ra~e~gI~~v---~~----d~r~~--~~-yh------G-rv~a~~~~lre~ 109 (114)
..+.|.+.++.+|+.+|+.+.+.||+-. ++ |+|.| +. |+ | -..|+++|+++.
T Consensus 131 aAt~d~~L~~~~g~~ia~E~ra~Gin~~~aPvvDv~rdPr~GR~~EsfGEDP~lv~~~a~A~V~GlQ~~ 199 (822)
T 3rrx_A 131 GAARDTDLIKRIGQATAKEVAATGIEWSFAPTVAVVRDDRWGRTYESYSEDPDLVKRYAGEMVTGIQGD 199 (822)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTTCCEEEEEECCCCSCTTSTTGGGSSCSCHHHHHHHHHHHHHHHHCC
T ss_pred hhcCCHHHHHHHHHHHHHHHHhcCCcEeeccccccccCCCcCccccCCCCCHHHHHHHHHHHHHHHhcc
Confidence 3457999999999999999999999953 12 33433 11 11 1 356788898875
No 186
>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A
Probab=31.81 E-value=53 Score=23.20 Aligned_cols=51 Identities=12% Similarity=0.160 Sum_probs=33.7
Q ss_pred CCHHHHHHHHHHHHHHHhhCCC--CEE-EE--ecCCCcchhhHHHHHHHHHHHcCc
Q 033650 61 RDVAAASKIGKLLGERLLLKDI--PAV-SV--FLKREQRYHGKVKAIIDSLREAGV 111 (114)
Q Consensus 61 ~n~~AA~~vG~~la~ra~e~gI--~~v-~~--d~r~~~~yhGrv~a~~~~lre~Gl 111 (114)
.|..+++..++.|++.+-..|- .++ .+ ...+......|...|.+++.++|+
T Consensus 109 D~~~~g~~a~~~l~~~~g~~~~~~~~i~~~~~~~~~~~~~~~R~~Gf~~~l~~~g~ 164 (306)
T 8abp_A 109 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 164 (306)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTCCGGGEEEEEEECTTSHHHHHHHHHHHHHHHHHTC
T ss_pred ChhHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCChHHHHHHHHHHHHHHhcCC
Confidence 4677888888888877655541 122 22 212223345799999999999986
No 187
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A*
Probab=31.69 E-value=69 Score=26.70 Aligned_cols=39 Identities=21% Similarity=0.370 Sum_probs=29.8
Q ss_pred HHHhhCCCCEEEEec-------CCCcchh-hHHHHHHHHHHHcCccc
Q 033650 75 ERLLLKDIPAVSVFL-------KREQRYH-GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 75 ~ra~e~gI~~v~~d~-------r~~~~yh-Grv~a~~~~lre~Gl~~ 113 (114)
++++++|++.|.+|. .++.+|. .--+.+++-++++||++
T Consensus 40 ~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~l~~mv~~~GLKl 86 (495)
T 1wdp_A 40 LQLRAAGVDGVMVDVWWGIIELKGPKQYDWRAYRSLLQLVQECGLTL 86 (495)
T ss_dssp HHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence 456789999998875 2344554 45789999999999986
No 188
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1
Probab=31.48 E-value=68 Score=26.75 Aligned_cols=39 Identities=15% Similarity=0.337 Sum_probs=29.8
Q ss_pred HHHhhCCCCEEEEec-------CCCcchh-hHHHHHHHHHHHcCccc
Q 033650 75 ERLLLKDIPAVSVFL-------KREQRYH-GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 75 ~ra~e~gI~~v~~d~-------r~~~~yh-Grv~a~~~~lre~Gl~~ 113 (114)
++++++|++.|.+|. .++.+|. .--+.+++-++++||++
T Consensus 41 ~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mv~~~GLKl 87 (498)
T 1fa2_A 41 KQVKAGGCDGVMVDVWWGIIEAKGPKQYDWSAYRELFQLVKKCGLKI 87 (498)
T ss_dssp HHHHHTTCCEEEEEEEHHHHTCSBTTBCCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence 456789999998875 2344554 45789999999999986
No 189
>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}
Probab=31.30 E-value=1e+02 Score=22.43 Aligned_cols=41 Identities=15% Similarity=0.114 Sum_probs=29.1
Q ss_pred HHHHHhhCCCCEEEEecCCCcc-hh-----hHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQR-YH-----GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~-yh-----Grv~a~~~~lre~Gl~~ 113 (114)
+.+.+.+.|++.|.+....... +. ..++.+.+.+.+.||.+
T Consensus 40 ~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gl~i 86 (316)
T 3qxb_A 40 AGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRKAGLTI 86 (316)
T ss_dssp HHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHHcCCeE
Confidence 4467789999999886422221 11 26888999999999975
No 190
>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*
Probab=31.22 E-value=54 Score=23.23 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHHHHHHhhCC--CCEEEEecCCCc---chhhHHHHHHHHHHHc-Cccc
Q 033650 62 DVAAASKIGKLLGERLLLKD--IPAVSVFLKREQ---RYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~g--I~~v~~d~r~~~---~yhGrv~a~~~~lre~-Gl~~ 113 (114)
|..+++..++.|.+++ | ..++.+- .|.. ....|...|.+++.+. |+++
T Consensus 114 ~~~~g~~a~~~L~~~~---G~~~~~I~~i-~g~~~~~~~~~R~~Gf~~al~~~~g~~~ 167 (288)
T 1gud_A 114 NVAVGAKGASFIIDKL---GAEGGEVAII-EGKAGNASGEARRNGATEAFKKASQIKL 167 (288)
T ss_dssp HHHHHHHHHHHHHHHH---GGGCEEEEEE-ECSTTCHHHHHHHHHHHHHHHTCTTEEE
T ss_pred hHHHHHHHHHHHHHHh---CCCCCEEEEE-eCCCCCchHhHHHHHHHHHHHhCCCcEE
Confidence 4445555555555443 6 6777554 2322 2346999999999988 8864
No 191
>2hnh_A DNA polymerase III alpha subunit; DNA replication, nucleotidyltransferase, beta, PHP, transferase; HET: DNA; 2.30A {Escherichia coli} PDB: 2hqa_A*
Probab=31.21 E-value=56 Score=28.97 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
+.|+++|++.|++.+-+-|.+ ..+ | +..+.+.+++.||++|
T Consensus 25 ~elv~~A~~~Gl~alAITDH~-~~~-G-~~~~~~~~~~~gIk~I 65 (910)
T 2hnh_A 25 APLVKKAAALGMPALAITDFT-NLC-G-LVKFYGAGHGAGIKPI 65 (910)
T ss_dssp HHHHHHHHHTTCSEEEECCBT-CCT-T-HHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHCCCCEEEEEeCC-cch-h-HHHHHHHHHHCCCeEE
Confidence 357899999999999888744 233 3 3446677888999864
No 192
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=31.11 E-value=38 Score=25.46 Aligned_cols=39 Identities=5% Similarity=-0.003 Sum_probs=27.2
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+.++++|.++|++.+++-| -+. .-...+.+.+++.|+++
T Consensus 113 e~f~~~~~~aGvdgvii~D-lp~---ee~~~~~~~~~~~gl~~ 151 (267)
T 3vnd_A 113 DEFYTKAQAAGVDSVLIAD-VPV---EESAPFSKAAKAHGIAP 151 (267)
T ss_dssp HHHHHHHHHHTCCEEEETT-SCG---GGCHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCEEEeCC-CCH---hhHHHHHHHHHHcCCeE
Confidence 5578888888888876543 232 22667788888888864
No 193
>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*
Probab=30.96 E-value=56 Score=22.96 Aligned_cols=51 Identities=8% Similarity=0.006 Sum_probs=30.7
Q ss_pred CHHHHHHHHHHHHHHHhh--CCCCE--EEEecCCC--c-chhhHHHHHHHHHHHc-Cccc
Q 033650 62 DVAAASKIGKLLGERLLL--KDIPA--VSVFLKRE--Q-RYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e--~gI~~--v~~d~r~~--~-~yhGrv~a~~~~lre~-Gl~~ 113 (114)
|..+++.+++.|.+++-. .|..+ +.+- .+. . ....|...|.+++.+. |+++
T Consensus 107 ~~~~~~~~~~~L~~~~g~~~~G~r~i~i~~l-~g~~~~~~~~~R~~gf~~~l~~~~g~~~ 165 (290)
T 2fn9_A 107 NYYGGVLAGEYFVKFLKEKYPDAKEIPYAEL-LGILSAQPTWDRSNGFHSVVDQYPEFKM 165 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCSCEEEEEE-ECCTTCHHHHHHHHHHHHHHTTSTTEEE
T ss_pred HHHHHHHHHHHHHHHhcccCCcccceeEEEE-EcCCCCchHHHHHHHHHHHHHhCCCCEE
Confidence 345556566655554321 17777 5433 222 2 2346999999999999 8864
No 194
>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}
Probab=30.84 E-value=44 Score=24.29 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHHHHHHHhh--CCCCEEEEecCCC--c-chhhHHHHHHHHHHHc-Cccc
Q 033650 69 IGKLLGERLLL--KDIPAVSVFLKRE--Q-RYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 69 vG~~la~ra~e--~gI~~v~~d~r~~--~-~yhGrv~a~~~~lre~-Gl~~ 113 (114)
.|+.+++.+.+ .|..++.+- .+. . ....|...|.+++.+. |+++
T Consensus 113 ~g~~a~~~L~~~~~G~~~I~~i-~~~~~~~~~~~R~~Gf~~al~~~pg~~~ 162 (325)
T 2x7x_A 113 IGRSVGNYIASSLKGKGNIVEL-TGLSGSTPAMERHQGFMAAISKFPDIKL 162 (325)
T ss_dssp HHHHHHHHHHHHTTTEEEEEEE-ESCTTSHHHHHHHHHHHHHHHTCTEEEE
T ss_pred HHHHHHHHHHHHcCCCceEEEE-ECCCCCccHHHHHHHHHHHHHhCCCCEE
Confidence 34444555555 387887654 232 1 2346899999999999 8864
No 195
>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A
Probab=30.79 E-value=1.1e+02 Score=21.78 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
.-+|+.+|+++.+.|.+-+..+ |.. .....++.+.+.+.|
T Consensus 39 ~gIG~~la~~l~~~G~~V~~~~-r~~---~~~~~~~~~~~~~~~ 78 (271)
T 4iin_A 39 KGIGAEIAKTLASMGLKVWINY-RSN---AEVADALKNELEEKG 78 (271)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SSC---HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCEEEEEe-CCC---HHHHHHHHHHHHhcC
Confidence 4588889999988888665555 432 223344444444443
No 196
>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}
Probab=30.64 E-value=58 Score=23.23 Aligned_cols=38 Identities=13% Similarity=0.052 Sum_probs=24.6
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.|.+.. . .+...+..+.+.+++.||.+
T Consensus 43 ~l~~~~~~G~~~vEl~~-~--~~~~~~~~~~~~l~~~gl~v 80 (287)
T 3kws_A 43 KLDFMEKLGVVGFEPGG-G--GLAGRVNEIKQALNGRNIKV 80 (287)
T ss_dssp HHHHHHHTTCCEEECBS-T--TCGGGHHHHHHHHTTSSCEE
T ss_pred HHHHHHHcCCCEEEecC-C--chHHHHHHHHHHHHHcCCeE
Confidence 44566677888776553 1 23455777777777777765
No 197
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=30.41 E-value=51 Score=27.04 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-Cccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~ 113 (114)
..++.|++.+.+.||+.+..-+ ++.+..|++++.+. +|++
T Consensus 28 ~~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~i~~ 68 (616)
T 2pan_A 28 RAVDAAMYVLEKEGITTAFGVP------GAAINPFYSAMRKHGGIRH 68 (616)
T ss_dssp EHHHHHHHHHHHTTCCEEEECC------CGGGHHHHHHHHHHCCCEE
T ss_pred cHHHHHHHHHHHCCCCEEEECC------CCccHHHHHHHHhcCCCcE
Confidence 4678899999999999985443 45677788888764 5765
No 198
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=30.41 E-value=30 Score=24.52 Aligned_cols=35 Identities=17% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHhhCCCCEEEEecCCCcchh-hHHHHHHHHHHHcCccc
Q 033650 74 GERLLLKDIPAVSVFLKREQRYH-GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 74 a~ra~e~gI~~v~~d~r~~~~yh-Grv~a~~~~lre~Gl~~ 113 (114)
|+...++||++|+|-+ .+... |. -.+-++++||++
T Consensus 136 a~aIi~aGI~rVvy~~--~~~~~~~~---~~~~l~~aGI~v 171 (193)
T 1vq2_A 136 AKAIAQSGIKKLVYCE--TYDKNKPG---WDDILRNAGIEV 171 (193)
T ss_dssp HHHHHHHTCCEEEEEE--CCTTCCTT---TTHHHHHTTCEE
T ss_pred HHHHHHhCCCEEEEec--CCCCcchH---HHHHHHHCCCEE
Confidence 4556678999998753 22222 21 146688999876
No 199
>4gqr_A Pancreatic alpha-amylase; glycosyl hydrolase, diabetes, obesity, digestion, glycosidas inhibition, flavonol, drug design; HET: NAG MYC; 1.20A {Homo sapiens} PDB: 1cpu_A* 1bsi_A 1u2y_A* 1u30_A* 1u33_A* 1xcw_A* 1xcx_A* 1xd0_A* 1xd1_A* 2qmk_A* 2qv4_A* 3bai_A* 3baj_A* 3baw_A* 3ij7_A* 1hny_A* 3ij9_A* 3ij8_A* 4gqq_A* 1kgw_A* ...
Probab=30.15 E-value=80 Score=24.15 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhCCCCEEEEecC---------CCcchhh----------------HHHHHHHHHHHcCcccC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLK---------REQRYHG----------------KVKAIIDSLREAGVKLL 114 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r---------~~~~yhG----------------rv~a~~~~lre~Gl~~~ 114 (114)
.|.+.+..-+.++|++.|.+-+= +..-||| -.+.|+++|-+.||++|
T Consensus 23 ~ia~e~~~yl~~~G~~~v~~~P~~e~~~~~~~~~~~~~~Y~~~dy~i~~~~Gt~~df~~lv~~aH~~Gi~Vi 94 (496)
T 4gqr_A 23 DIALECERYLAPKGFGGVQVSPPNENVAIYNPFRPWWERYQPVSYKLCTRSGNEDEFRNMVTRCNNVGVRIY 94 (496)
T ss_dssp HHHHHHHHTTTTTTCCEEEECCCSCBBCCTTTTSCGGGGGSBSCSCSCBTTBCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHhCCCEEEeCccccCccCCCCCCCcccccCccCceeCCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 34444555567899999977431 1111333 59999999999999875
No 200
>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}
Probab=29.72 E-value=1.1e+02 Score=21.35 Aligned_cols=41 Identities=15% Similarity=-0.040 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCCEEEEecCCCcc---hhhHHHHHHHHHHHcCccc
Q 033650 72 LLGERLLLKDIPAVSVFLKREQR---YHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~---yhGrv~a~~~~lre~Gl~~ 113 (114)
...+++.+.|++.|.+.. .... -...+..+.+.+.+.||++
T Consensus 34 ~~l~~~~~~G~~~vEl~~-~~~~~~~~~~~~~~~~~~l~~~gl~i 77 (257)
T 3lmz_A 34 TTLKTLERLDIHYLCIKD-FHLPLNSTDEQIRAFHDKCAAHKVTG 77 (257)
T ss_dssp HHHHHHHHTTCCEEEECT-TTSCTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCEEEEec-ccCCCCCCHHHHHHHHHHHHHcCCeE
Confidence 456778889999987763 2111 2356888999999999875
No 201
>2jwk_A Protein TOLR; periplasmic domain, membrane, inner membrane, protein transport, transmembrane, transport, membrane protein; NMR {Haemophilus influenzae} PDB: 2jwl_A
Probab=29.60 E-value=82 Score=17.95 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=17.9
Q ss_pred CcchhhHHHHHHHHHHHcCcc
Q 033650 92 EQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 92 ~~~yhGrv~a~~~~lre~Gl~ 112 (114)
....+|.|-.+++.++++|+.
T Consensus 54 ~~~~y~~vv~vmd~l~~aG~~ 74 (74)
T 2jwk_A 54 KEVPYEEVIKALNLLHLAGIK 74 (74)
T ss_dssp TTSCHHHHHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 445689999999999999974
No 202
>1n13_A PVLARGDC, pyruvoyl-dependent arginine decarboxylase beta chain; pyruvoyl group, pyruvate, agmatine, lyase; 1.40A {Methanocaldococcus jannaschii} SCOP: d.155.1.2 PDB: 1mt1_A 2qqc_A 2qqd_A
Probab=29.43 E-value=33 Score=20.10 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHcCcc
Q 033650 96 HGKVKAIIDSLREAGVK 112 (114)
Q Consensus 96 hGrv~a~~~~lre~Gl~ 112 (114)
.-++.||=.+|+++||.
T Consensus 28 ~t~L~sFd~AL~dAgI~ 44 (52)
T 1n13_A 28 ETPLNAFDGALLNAGIG 44 (52)
T ss_dssp SSHHHHHHHHHHHHTCT
T ss_pred CchHHHHHHHHHHCCCc
Confidence 45799999999999985
No 203
>3ckm_A YRAM (HI1655), LPOA; periplasmic-binding protein, lipoprotein, unliganded, biosynthetic protein; 1.35A {Haemophilus influenzae} SCOP: c.93.1.1
Probab=29.25 E-value=49 Score=24.20 Aligned_cols=45 Identities=4% Similarity=-0.094 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcchh-hHHHHHHHHHHHcCcccC
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRYH-GKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~yh-Grv~a~~~~lre~Gl~~~ 114 (114)
-+..+|+.+.+.|.+++.+-. ....|. +-..+|.+.+.+.|.+++
T Consensus 111 ~~~~~a~~~~~~g~k~~~ii~-~~~~yg~~~~~~f~~~~~~~Gg~vv 156 (327)
T 3ckm_A 111 EAESAANKMWNDGVRNPLVAM-PQNDLGQRVGNAFNVRWQQLAGTDA 156 (327)
T ss_dssp HHHHHHHHHHHTTCCSCEEEE-ESSHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHhcCCeeEEEEe-cCChHHHHHHHHHHHHHHHCCCeEE
Confidence 466777778888988764432 233454 668889999999998763
No 204
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}
Probab=29.17 E-value=65 Score=23.90 Aligned_cols=40 Identities=13% Similarity=0.213 Sum_probs=25.6
Q ss_pred HHHHHhhCCCCEEEEecCCCc----------chh---hHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQ----------RYH---GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~----------~yh---Grv~a~~~~lre~Gl~~ 113 (114)
-.++|+++|++.|.++. ... .+. .++...++.+++.|+.+
T Consensus 84 ~i~~a~~~G~~~V~i~~-~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V 136 (295)
T 1ydn_A 84 GYEAAAAAHADEIAVFI-SASEGFSKANINCTIAESIERLSPVIGAAINDGLAI 136 (295)
T ss_dssp HHHHHHHTTCSEEEEEE-ESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHCCCCEEEEEE-ecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 35688888998888774 222 122 24455577778888764
No 205
>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*
Probab=29.14 E-value=74 Score=23.74 Aligned_cols=43 Identities=16% Similarity=0.068 Sum_probs=30.0
Q ss_pred HHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 70 GKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 70 G~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
-.-+++.|.++|+.-+++.. .+...+ ....+.+.+++.|+.++
T Consensus 77 ~~~~~~ea~~~Gi~~iVi~t-~G~~~~-~~~~l~~~A~~~gv~li 119 (288)
T 2nu8_A 77 CKDSILEAIDAGIKLIITIT-EGIPTL-DMLTVKVKLDEAGVRMI 119 (288)
T ss_dssp HHHHHHHHHHTTCSEEEECC-CCCCHH-HHHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHHHCCCCEEEEEC-CCCCHH-HHHHHHHHHHHcCCEEE
Confidence 34567788899999866653 454433 35678888899998653
No 206
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=28.97 E-value=36 Score=28.71 Aligned_cols=41 Identities=12% Similarity=0.279 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHH-cCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLRE-AGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre-~Gl~~ 113 (114)
..+++.|++.+.+.||+.+..-+ ++.+..|.+++.+ .+|++
T Consensus 82 ~~~a~~lv~~L~~~GV~~vFg~P------G~~~~pl~dal~~~~~i~~ 123 (677)
T 1t9b_A 82 LTGGQIFNEMMSRQNVDTVFGYP------GGAILPVYDAIHNSDKFNF 123 (677)
T ss_dssp CBHHHHHHHHHHHTTCCEEEECC------CGGGHHHHHHTTTCSSSEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEec------CccHHHHHHHHHhCCCCeE
Confidence 35789999999999999985443 4667778888865 35665
No 207
>2h4a_A YRAM (HI1655); perplasmic binding protein, lipoprotein; 1.35A {Haemophilus influenzae} PDB: 3ckm_A
Probab=28.91 E-value=51 Score=24.85 Aligned_cols=44 Identities=5% Similarity=-0.076 Sum_probs=31.6
Q ss_pred HHHHHHHHhhCCCCEEEEecCCCcchh-hHHHHHHHHHHHcCcccC
Q 033650 70 GKLLGERLLLKDIPAVSVFLKREQRYH-GKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 70 G~~la~ra~e~gI~~v~~d~r~~~~yh-Grv~a~~~~lre~Gl~~~ 114 (114)
|+.+|+.+.+.|++++.+-. ...-|. +-.++|.+.+.+.|.+++
T Consensus 110 ~~~~a~~a~~~g~k~vail~-~~~~yG~~~~~~F~~~~~~~Gg~vv 154 (325)
T 2h4a_A 110 AESAANKMWNDGVRNPLVAM-PQNDLGQRVGNAFNVRWQQLAGTDA 154 (325)
T ss_dssp HHHHHHHHHHTTCCSCEEEE-ESSHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHcCCCeEEEEE-cCCcHHHHHHHHHHHHHHHcCCCcc
Confidence 67888888888998754431 234565 567889999999988753
No 208
>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*
Probab=28.65 E-value=97 Score=22.37 Aligned_cols=43 Identities=9% Similarity=-0.064 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhC-C-CCEEEEecCCCc--chhhHHHHHHHHHHHcCc
Q 033650 68 KIGKLLGERLLLK-D-IPAVSVFLKREQ--RYHGKVKAIIDSLREAGV 111 (114)
Q Consensus 68 ~vG~~la~ra~e~-g-I~~v~~d~r~~~--~yhGrv~a~~~~lre~Gl 111 (114)
..|+.+++.+.+. | ..++.|- .+.. ....|...|.+++.+.|+
T Consensus 159 ~~g~~a~~~L~~~~Gg~~~I~~i-~~~~~~~~~~R~~Gf~~~l~~~~~ 205 (342)
T 1jx6_A 159 EGSRELATEFGKFFPKHTYYSVL-YFSEGYISDVRGDTFIHQVNRDNN 205 (342)
T ss_dssp HHHHHHHHHHHHHSCTTCEEEEE-CCSTTHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCCceEEEE-EcCCcchhhHHHHHHHHHHHhCCC
Confidence 3455555555564 6 8888665 3332 234689999999999886
No 209
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=28.26 E-value=71 Score=23.59 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=29.8
Q ss_pred HHHHHHHHHhh-CCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 69 IGKLLGERLLL-KDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 69 vG~~la~ra~e-~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
.+..+++-+.+ .|.+++.+-. ....| .++...|.+++.+.|+++
T Consensus 129 ~~~~~~~~l~~~~g~~~iaii~-~~~~~g~~~~~~~~~~l~~~G~~v 174 (392)
T 3lkb_A 129 QVVALLEYIAREKKGAKVALVV-HPSPFGRAPVEDARKAARELGLQI 174 (392)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEE-CSSHHHHTTHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHhCCCCEEEEEE-eCCchhhhHHHHHHHHHHHcCCeE
Confidence 34555666666 4888875542 23344 467899999999999875
No 210
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=27.98 E-value=1.3e+02 Score=19.62 Aligned_cols=44 Identities=9% Similarity=0.056 Sum_probs=29.2
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcch------------------hhHHHHHHHHHHHcCccc
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRY------------------HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~y------------------hGrv~a~~~~lre~Gl~~ 113 (114)
.|-.+|..+.+.|.+-.+++ ++.... ..-...+.+.+++.|++|
T Consensus 12 ~Gl~~A~~l~~~g~~v~lie-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v 73 (180)
T 2ywl_A 12 SGLSAALFLARAGLKVLVLD-GGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEV 73 (180)
T ss_dssp HHHHHHHHHHHTTCCEEEEE-CSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHCCCcEEEEe-CCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEE
Confidence 46667777777899877777 443111 223567778888889876
No 211
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=27.96 E-value=32 Score=24.25 Aligned_cols=52 Identities=2% Similarity=0.095 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHHHHH-hhCCC--CEEEEec--CCCcchhhHHHHHHHHHHHc-Cccc
Q 033650 62 DVAAASKIGKLLGERL-LLKDI--PAVSVFL--KREQRYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 62 n~~AA~~vG~~la~ra-~e~gI--~~v~~d~--r~~~~yhGrv~a~~~~lre~-Gl~~ 113 (114)
|..+++..++.|.+++ -..|- .++.+-. .+......|...|.+++++. |+++
T Consensus 112 ~~~~g~~~~~~l~~~~~g~~~~~~~~i~~i~g~~~~~~~~~R~~gf~~~l~~~~g~~~ 169 (293)
T 3l6u_A 112 NQMIGEQLASYIKNELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENEPTLSI 169 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSCEEEEEEECSTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred HHHHHHHHHHHHHHHhccCCCCCCceEEEEECCCCCchHHHHHHHHHHHHHhCCCcEE
Confidence 4566677776666653 21111 1554441 11223456999999999999 9875
No 212
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=27.85 E-value=68 Score=22.58 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=27.5
Q ss_pred HHHHHHHHHhhC-C-CCEEEEecCCCc---chhhHHHHHHHHHHHc-Cccc
Q 033650 69 IGKLLGERLLLK-D-IPAVSVFLKREQ---RYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~-g-I~~v~~d~r~~~---~yhGrv~a~~~~lre~-Gl~~ 113 (114)
.|+.+++.+.+. | ..++.+- .+.. ....|.+.|.+++++. |+++
T Consensus 108 ~g~~a~~~L~~~~gg~~~I~~i-~g~~~~~~~~~R~~Gf~~al~~~~~~~~ 157 (283)
T 2ioy_A 108 GGEMAAEFIAKALKGKGNVVEL-EGIPGASAARDRGKGFDEAIAKYPDIKI 157 (283)
T ss_dssp HHHHHHHHHHHHTTTCEEEEEE-ECCTTCHHHHHHHHHHHHHHTTCTTEEE
T ss_pred HHHHHHHHHHHHcCCCceEEEE-ECCCCCccHHHHHHHHHHHHHhCCCCEE
Confidence 344445555554 4 6777554 2321 2346899999999998 8764
No 213
>3lrk_A Alpha-galactosidase 1; tetramer, GH27, glycoprotein, glycosida hydrolase; HET: NAG BTB; 1.95A {Saccharomyces cerevisiae} PDB: 3lrl_A* 3lrm_A*
Probab=27.82 E-value=58 Score=26.87 Aligned_cols=52 Identities=6% Similarity=-0.029 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHHHH-HHhhCCCCEEEEecCCCc--------------chhhHHHHHHHHHHHcCccc
Q 033650 61 RDVAAASKIGKLLGE-RLLLKDIPAVSVFLKREQ--------------RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 61 ~n~~AA~~vG~~la~-ra~e~gI~~v~~d~r~~~--------------~yhGrv~a~~~~lre~Gl~~ 113 (114)
-|.+........+++ -.++.|++-+++|| +=+ ++-+-++++++-+.+.|++|
T Consensus 44 i~e~~i~~~Ad~~~~~Gl~~~GyeyvvIDD-GW~~~rd~~G~~~~d~~kFP~Glk~Lad~ih~~GlKf 110 (479)
T 3lrk_A 44 VSEQLLLDTADRISDLGLKDMGYKYIILDD-CWSSGRDSDGFLVADEQKFPNGMGHVADHLHNNSFLF 110 (479)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGTCCEEECCS-SCEEEECTTSCEEECTTTCTTCHHHHHHHHHHTTCEE
T ss_pred CCHHHHHHHHHHHHhcCccccCceEEEECC-ccccccCCCCCEecChhhcCCCHHHHHHHHHHCCCee
Confidence 455566666666665 34557999999996 311 23334999999999999987
No 214
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor complex; HET: DFU; 1.60A {Bifidobacterium longum subsp} PDB: 3mo4_A* 3uet_A*
Probab=27.80 E-value=96 Score=25.33 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=31.8
Q ss_pred HHHHHHHhhCCCCEEEEecCC--Cc---------------ch----hhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKR--EQ---------------RY----HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~--~~---------------~y----hGrv~a~~~~lre~Gl~~ 113 (114)
...|+.++++|.+.+++--+- |+ .+ .--|+.+++++|+.||+|
T Consensus 65 ~~W~~~~k~aGakyvvlt~kHHdGF~lw~S~~t~~~v~~~p~~~~krDiv~el~~A~r~~gl~~ 128 (478)
T 3ues_A 65 DQWMDALVAGGMAGVILTCKHHDGFCLWPSRLTRHTVASSPWREGKGDLVREVSESARRHGLKF 128 (478)
T ss_dssp HHHHHHHHHTTCSEEEEEEECTTCCBSSCCTTCSCBGGGSSGGGGTCCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCEEEEeEEecCCccccCCCCCCcccccCCccCCCCCHHHHHHHHHHHcCCeE
Confidence 457888999999999874310 10 11 246999999999999986
No 215
>3og2_A Beta-galactosidase; TIM barrel domain, glycoside hydrolase, family 35, glycoprot hydrolase; HET: NAG BMA MAN GLC; 1.20A {Trichoderma reesei} PDB: 3ogr_A* 3ogs_A* 3ogv_A*
Probab=27.61 E-value=50 Score=29.86 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=33.3
Q ss_pred HHHHHHhhCCCCEEEEec--------CCCcchhh--HHHHHHHHHHHcCcccC
Q 033650 72 LLGERLLLKDIPAVSVFL--------KREQRYHG--KVKAIIDSLREAGVKLL 114 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~--------r~~~~yhG--rv~a~~~~lre~Gl~~~ 114 (114)
-.-++++++|++.|.+.. +|.+.+.| -+..|++.++|+||.+|
T Consensus 60 d~l~kmKa~GlNtV~tYV~Wn~hEP~eG~fdFsg~~dL~~fl~la~e~GL~VI 112 (1003)
T 3og2_A 60 DVFHKIKALGFNTVSFYVDWALLEGKPGRFRADGIFSLEPFFEAATKAGIYLL 112 (1003)
T ss_dssp HHHHHHHTTTCCEEEEECCHHHHCSBTTBCCCCGGGCSHHHHHHHHHHTCEEE
T ss_pred HHHHHHHHcCCCEEEEecchhhcCCCCCEecccchhhHHHHHHHHHHcCCEEE
Confidence 467889999999987642 24455556 49999999999999764
No 216
>1owl_A Photolyase, deoxyribodipyrimidine photolyase; DNA repair, flavin enzyme, photoreactivating enzyme; HET: FAD; 1.80A {Synechococcus elongatus} SCOP: a.99.1.1 c.28.1.1 PDB: 1owm_A* 1own_A* 1owo_A* 1owp_A* 1qnf_A* 1tez_A*
Probab=27.60 E-value=1e+02 Score=24.79 Aligned_cols=43 Identities=16% Similarity=0.197 Sum_probs=31.5
Q ss_pred HHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 70 GKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 70 G~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
..+|.+-+.+.|++.|+++ +....+ .-+-+++.+.+.+.||.+
T Consensus 81 ~~~l~~l~~~~~~~~v~~~-~~~~p~~~~rd~~v~~~l~~~gi~~ 124 (484)
T 1owl_A 81 QHLIPQLAQQLQAEAVYWN-QDIEPYGRDRDGQVAAALKTAGIRA 124 (484)
T ss_dssp HHHHHHHHHHTTCSEEEEE-CCCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHcCCCEEEEe-ccCChhHHHHHHHHHHHHHHcCcEE
Confidence 4566777788899999887 343333 357788888888899876
No 217
>3thd_A Beta-galactosidase; TIM-barrel domain, glycosyl hydrolase, glycosylation, hydrolase; HET: NAG DGJ; 1.79A {Homo sapiens} PDB: 3thc_A*
Probab=27.59 E-value=61 Score=27.84 Aligned_cols=44 Identities=11% Similarity=0.238 Sum_probs=32.9
Q ss_pred HHHHHHHhhCCCCEEEEec--------CCCcchhh--HHHHHHHHHHHcCcccC
Q 033650 71 KLLGERLLLKDIPAVSVFL--------KREQRYHG--KVKAIIDSLREAGVKLL 114 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~--------r~~~~yhG--rv~a~~~~lre~Gl~~~ 114 (114)
+-..++++++|++.|.+.. +|.+.+.| -+..|++.+.++||.+|
T Consensus 43 ~d~l~kmKa~G~NtV~~yv~W~~hEP~~G~fdF~g~~DL~~fl~~a~~~GL~Vi 96 (654)
T 3thd_A 43 KDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVI 96 (654)
T ss_dssp HHHHHHHHHTTCSEEEEECCHHHHCSBTTBCCCSGGGCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCEEEEEechhhcCCCCCccCccchHHHHHHHHHHHHcCCEEE
Confidence 3467889999999987621 24444555 38999999999999764
No 218
>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}
Probab=27.45 E-value=74 Score=23.42 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
.=+|+.+|+++.+.|-+=+..| |. ..+.+..++.+++.|-+
T Consensus 19 ~GIG~aia~~la~~Ga~Vvi~~-~~----~~~~~~~~~~l~~~g~~ 59 (255)
T 4g81_D 19 RGLGFAYAEGLAAAGARVILND-IR----ATLLAESVDTLTRKGYD 59 (255)
T ss_dssp SHHHHHHHHHHHHTTCEEEECC-SC----HHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHHHCCCEEEEEE-CC----HHHHHHHHHHHHhcCCc
Confidence 4578888888888887655544 42 24556666666666543
No 219
>1rcu_A Conserved hypothetical protein VT76; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.50A {Thermotoga maritima} SCOP: c.129.1.1
Probab=27.34 E-value=1.2e+02 Score=21.73 Aligned_cols=40 Identities=20% Similarity=0.270 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
.++|+.+|+.||+ .|+.=| . |+ ..|-..|..+++.++|-.
T Consensus 44 ~~~A~~lg~~LA~----~G~~vV--s--Gg--~~GiM~aa~~gAl~~GG~ 83 (195)
T 1rcu_A 44 RDICLELGRTLAK----KGYLVF--N--GG--RDGVMELVSQGVREAGGT 83 (195)
T ss_dssp HHHHHHHHHHHHH----TTCEEE--E--CC--SSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHH----CCCEEE--e--CC--HHHHHHHHHHHHHHcCCc
Confidence 4678888888887 476543 3 43 479999999999998854
No 220
>1ydh_A AT5G11950; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 2.15A {Arabidopsis thaliana} SCOP: c.129.1.1 PDB: 2q4d_A
Probab=27.21 E-value=1.4e+02 Score=21.54 Aligned_cols=40 Identities=28% Similarity=0.341 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 64 AAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 64 ~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
++|+.+|+.||++ |+.=| . -|+ ..|-..|+.+++.++|-.
T Consensus 28 ~~A~~lg~~LA~~----g~~lV--~-GGg--~~GlM~aa~~gA~~~GG~ 67 (216)
T 1ydh_A 28 DAAIELGNELVKR----KIDLV--Y-GGG--SVGLMGLISRRVYEGGLH 67 (216)
T ss_dssp HHHHHHHHHHHHT----TCEEE--E-CCC--SSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHC----CCEEE--E-CCC--cccHhHHHHHHHHHcCCc
Confidence 4677788887764 66543 3 234 138999999999998843
No 221
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=27.10 E-value=21 Score=29.28 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc--Cccc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA--GVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~--Gl~~ 113 (114)
.+++.|++.+.+.||+.+.--+ ++.+..|.+++.+. +|++
T Consensus 5 ~~a~~lv~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~~i~~ 46 (590)
T 1v5e_A 5 NIGLAVMKILESWGADTIYGIP------SGTLSSLMDAMGEEENNVKF 46 (590)
T ss_dssp EHHHHHHHHHHHTTCCEEEECC------CTTTHHHHTTSSSTTCCCEE
T ss_pred cHHHHHHHHHHHcCCCEEEEec------CCchHHHHHHHHhcCCCCeE
Confidence 3678999999999999985443 44566788887664 5654
No 222
>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2
Probab=26.96 E-value=1.3e+02 Score=20.78 Aligned_cols=39 Identities=21% Similarity=0.269 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
.-+|..+|+++.+.|.+-+..+ |.. .+...+.+.+++.|
T Consensus 15 ~gIG~~~a~~l~~~G~~v~~~~-r~~----~~~~~~~~~~~~~~ 53 (247)
T 3lyl_A 15 RGIGFEVAHALASKGATVVGTA-TSQ----ASAEKFENSMKEKG 53 (247)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SSH----HHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcC
Confidence 3578888888888887655555 432 33444555555444
No 223
>4b4k_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase; 2.50A {Bacillus anthracis}
Probab=26.91 E-value=1.1e+02 Score=22.13 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=31.0
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.++-+.+.||..-+ ..=+.++--.++..+++.+++.|++++
T Consensus 41 a~~~L~~~gI~~e~-~V~SAHRtp~~l~~~~~~a~~~g~~Vi 81 (181)
T 4b4k_A 41 ACDILDELNIPYEK-KVVSAHRTPDYMFEYAETARERGLKVI 81 (181)
T ss_dssp HHHHHHHTTCCEEE-EECCTTTSHHHHHHHHHHTTTTTCCEE
T ss_pred HHHHHHHcCCCeeE-EEEccccChHHHHHHHHHHHhcCceEE
Confidence 34556788998432 223788888999999999999998764
No 224
>3d3a_A Beta-galactosidase; protein structure initiative II, PSI II, NYSGXRC, 11092F, structural genomics; 2.15A {Bacteroides thetaiotaomicron vpi-5482}
Probab=26.58 E-value=53 Score=27.74 Aligned_cols=44 Identities=9% Similarity=0.201 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCCEEEEec--------CCCcchhh--HHHHHHHHHHHcCcccC
Q 033650 71 KLLGERLLLKDIPAVSVFL--------KREQRYHG--KVKAIIDSLREAGVKLL 114 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~--------r~~~~yhG--rv~a~~~~lre~Gl~~~ 114 (114)
+-..+++++.|++.|.+.. .|.+-+.| .+..|++.+.+.||.+|
T Consensus 40 ~~dl~~mK~~G~N~Vrt~v~W~~hEP~~G~ydf~gl~~l~~fl~la~e~GL~VI 93 (612)
T 3d3a_A 40 EHRIKMCKALGMNTICLYVFWNFHEPEEGRYDFAGQKDIAAFCRLAQENGMYVI 93 (612)
T ss_dssp HHHHHHHHHHTCCEEEEECCHHHHCSSTTCCCCSGGGCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCEEEEcChHHhcCCCCCccChhHHHHHHHHHHHHHHCCCEEE
Confidence 3456789999999997651 23444444 48999999999999864
No 225
>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form, enzyme-metal COMP isomerase; 2.00A {Pyrococcus horikoshii}
Probab=26.48 E-value=2.2e+02 Score=22.43 Aligned_cols=58 Identities=29% Similarity=0.335 Sum_probs=39.1
Q ss_pred hhccCCCCCHHHHHHHHHHHHHHHhhCCC--CEEEEecCCCcchhhH--HHHHHHHHHHcCccc
Q 033650 54 RSTIGCTRDVAAASKIGKLLGERLLLKDI--PAVSVFLKREQRYHGK--VKAIIDSLREAGVKL 113 (114)
Q Consensus 54 k~~l~~~~n~~AA~~vG~~la~ra~e~gI--~~v~~d~r~~~~yhGr--v~a~~~~lre~Gl~~ 113 (114)
++..+..-|.+.+..+|..+|.-+.+.+- ..|++= .-.+++|. -.+++.++..+|+++
T Consensus 11 RG~~~~~lt~~~v~~~~~a~~~~l~~~~~~~~~VvIG--~D~R~ss~~l~~a~~~gl~~~G~~V 72 (455)
T 1wqa_A 11 RGIANEKITPEFAMKIGMAFGTLLKREGRKKPLVVVG--RDTRVSGEMLKEALISGLLSVGCDV 72 (455)
T ss_dssp EEEBTTTBCHHHHHHHHHHHHHHHHHTTCSSCEEEEE--ECSCTTHHHHHHHHHHHHHHTTCEE
T ss_pred eeecCCCcCHHHHHHHHHHHHHHHHhcCCCCCeEEEE--eCCCcCHHHHHHHHHHHHHHcCCeE
Confidence 33344446888999999999998876542 224433 12244554 578999999999976
No 226
>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*
Probab=26.39 E-value=1.4e+02 Score=21.83 Aligned_cols=24 Identities=17% Similarity=0.192 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKRE 92 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~ 92 (114)
.+|..|++.+++.|.+-..++ |..
T Consensus 21 ~iG~~l~~~L~~~g~~V~~l~-R~~ 44 (346)
T 3i6i_A 21 FIGQFVATASLDAHRPTYILA-RPG 44 (346)
T ss_dssp HHHHHHHHHHHHTTCCEEEEE-CSS
T ss_pred HHHHHHHHHHHHCCCCEEEEE-CCC
Confidence 589999999999996655555 554
No 227
>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}
Probab=26.39 E-value=1.4e+02 Score=21.49 Aligned_cols=40 Identities=18% Similarity=0.175 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
.-+|+.+|+++.+.|.+-+.++. .. ..+...+++.+.+.|
T Consensus 39 ~GIG~aia~~la~~G~~V~~~~~-~~---~~~~~~~~~~~~~~~ 78 (280)
T 4da9_A 39 RGIGLGIARALAASGFDIAITGI-GD---AEGVAPVIAELSGLG 78 (280)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEES-CC---HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCeEEEEeC-CC---HHHHHHHHHHHHhcC
Confidence 35788888888888876555552 21 233444444444433
No 228
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}
Probab=26.33 E-value=1.1e+02 Score=22.89 Aligned_cols=22 Identities=14% Similarity=-0.396 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHHHHhhCCCC
Q 033650 62 DVAAASKIGKLLGERLLLKDIP 83 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~gI~ 83 (114)
+.+.+...-+...+.|++.|+.
T Consensus 115 s~~e~l~~~~~~v~~a~~~g~~ 136 (293)
T 3ewb_X 115 SRAEVLASIKHHISYARQKFDV 136 (293)
T ss_dssp CHHHHHHHHHHHHHHHHTTCSC
T ss_pred CHHHHHHHHHHHHHHHHhCCCE
Confidence 3444444444444555555543
No 229
>3rg8_A Phosphoribosylaminoimidazole carboxylase, PURE PR; purine biosynthesis, lyase; 1.74A {Treponema denticola} SCOP: c.23.8.0 PDB: 3rgg_A*
Probab=26.06 E-value=1.6e+02 Score=20.65 Aligned_cols=40 Identities=13% Similarity=0.148 Sum_probs=28.0
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc-Cccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA-GVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~-Gl~~ 113 (114)
.++-+.+.||..- +..-+.|+--.++..+++.+++. |+++
T Consensus 21 a~~~l~~~gi~~e-v~V~saHR~p~~~~~~~~~a~~~~~~~V 61 (159)
T 3rg8_A 21 IASELKTFGIEYA-IRIGSAHKTAEHVVSMLKEYEALDRPKL 61 (159)
T ss_dssp HHHHHHHTTCEEE-EEECCTTTCHHHHHHHHHHHHTSCSCEE
T ss_pred HHHHHHHcCCCEE-EEEEcccCCHHHHHHHHHHhhhcCCCcE
Confidence 4445567898632 22237888889999999999875 5654
No 230
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=25.99 E-value=1.1e+02 Score=21.90 Aligned_cols=39 Identities=31% Similarity=0.420 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
.-+|+.+|+++.+.|.+-+..+ |. ..+...+++.+++.|
T Consensus 34 ~GIG~aia~~la~~G~~V~~~~-r~----~~~~~~~~~~l~~~~ 72 (279)
T 3sju_A 34 SGIGLAVARTLAARGIAVYGCA-RD----AKNVSAAVDGLRAAG 72 (279)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SC----HHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEe-CC----HHHHHHHHHHHHhcC
Confidence 4588888888888887655445 43 234555555555444
No 231
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A*
Probab=25.92 E-value=99 Score=26.01 Aligned_cols=39 Identities=23% Similarity=0.400 Sum_probs=29.8
Q ss_pred HHHhhCCCCEEEEec------C-CCcchh-hHHHHHHHHHHHcCccc
Q 033650 75 ERLLLKDIPAVSVFL------K-REQRYH-GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 75 ~ra~e~gI~~v~~d~------r-~~~~yh-Grv~a~~~~lre~Gl~~ 113 (114)
++++++|++.|.+|. + ++.+|. .--+.+++-+|++||++
T Consensus 38 ~~LK~~GVdGVmvDVWWGiVE~~~P~~YdWsgY~~L~~mvr~~GLKl 84 (535)
T 2xfr_A 38 RKLVEAGVDGVMVDVWWGLVEGKGPKAYDWSAYKQLFELVQKAGLKL 84 (535)
T ss_dssp HHHHHTTCCEEEEEEEHHHHTCSSTTCCCCHHHHHHHHHHHHTTCEE
T ss_pred HHHHHcCCCEEEEEeEeeeeccCCCCccCcHHHHHHHHHHHHcCCeE
Confidence 456789999998875 1 344554 45789999999999986
No 232
>2z0f_A Putative phosphoglucomutase; isomerase, magnesium, metal-binding, structural genomics; 2.52A {Thermus thermophilus}
Probab=25.68 E-value=1.4e+02 Score=24.06 Aligned_cols=55 Identities=9% Similarity=0.002 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHHHHHhhCCCC-EEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 59 CTRDVAAASKIGKLLGERLLLKDIP-AVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 59 ~~~n~~AA~~vG~~la~ra~e~gI~-~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
..-|.+.+..+|..+|.-+++.|.. .|++=....+.-.--..+++.+|..+|+++
T Consensus 38 ~~lt~~~v~~i~~a~~~~l~~~~~~~~VvIG~D~R~~S~~~~~~~~~gl~a~Gi~V 93 (524)
T 2z0f_A 38 ATFTEAHVLAIAQAIAELRPSFGATGPLFLAKDTHALSEPAWATALSVFAAHGIEV 93 (524)
T ss_dssp TSSCHHHHHHHHHHHHHHTTTTTCCSCEEEEECSCTTHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcchHHHHHHHHHHHHHCCCEE
Confidence 3457889999999999988776653 344321011111223577889999999986
No 233
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri}
Probab=25.58 E-value=90 Score=19.75 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=21.1
Q ss_pred HhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 77 LLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 77 a~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+.+.+++++++-. +...+..+..+++.+.+.|+++
T Consensus 61 ~~~~~id~viia~--~~~~~~~~~~i~~~l~~~gv~v 95 (141)
T 3nkl_A 61 IKKHCISTVLLAV--PSASQVQKKVIIESLAKLHVEV 95 (141)
T ss_dssp HHHHTCCEEEECC--TTSCHHHHHHHHHHHHTTTCEE
T ss_pred HHHCCCCEEEEeC--CCCCHHHHHHHHHHHHHcCCeE
Confidence 3345677776553 2233456777777777777764
No 234
>3dmy_A Protein FDRA; predicted actyl-COA synthetase, nysgrc, PSI-II, STRU genomics, protein structure initiative; 2.07A {Escherichia coli}
Probab=25.57 E-value=71 Score=26.17 Aligned_cols=40 Identities=18% Similarity=0.276 Sum_probs=29.2
Q ss_pred HHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 72 LLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
-..+.|.++|+. +++. ..|+.. -....+.+.+++.|+.++
T Consensus 51 ~~v~e~~~~Gv~-~vii-s~Gf~~-~~~~~l~~~A~~~g~rli 90 (480)
T 3dmy_A 51 ELANQALDRNLN-VMMF-SDNVTL-EDEIQLKTRAREKGLLVM 90 (480)
T ss_dssp HHHHHHHHTTCE-EEEC-CCCCCH-HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHhcCCC-EEEE-CCCCCH-HHHHHHHHHHHHcCCEEE
Confidence 456678899999 7676 467652 345678888999998764
No 235
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=25.53 E-value=1.1e+02 Score=22.07 Aligned_cols=18 Identities=11% Similarity=0.136 Sum_probs=8.8
Q ss_pred HHHHHHHHHHhhCCCCEE
Q 033650 68 KIGKLLGERLLLKDIPAV 85 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v 85 (114)
..-+.+.+.|.+.|+.-+
T Consensus 132 ~~~~~v~~~~~~~g~~vi 149 (273)
T 2qjg_A 132 RDLGMIAETCEYWGMPLI 149 (273)
T ss_dssp HHHHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHcCCCEE
Confidence 334444555555555533
No 236
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=25.24 E-value=29 Score=27.84 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=27.4
Q ss_pred HHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+++.|++.+.+.||+.+.--+ ++.+..|.+++. .++++
T Consensus 4 ~a~~l~~~L~~~GV~~vfg~P------G~~~~~l~~al~-~~i~~ 41 (528)
T 1q6z_A 4 VHGTTYELLRRQGIDTVFGNP------GSNALPFLKDFP-EDFRY 41 (528)
T ss_dssp HHHHHHHHHHHTTCCEEEECC------CGGGHHHHTTCC-TTCEE
T ss_pred HHHHHHHHHHHCCCCEEEECC------CcchHHHHHHHh-hcCcE
Confidence 678999999999999985443 445666777763 45554
No 237
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=25.07 E-value=71 Score=25.89 Aligned_cols=39 Identities=13% Similarity=0.015 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGV 111 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl 111 (114)
..+++.|++.+.+.||+.+..-+ ++.+..|.+++.+.++
T Consensus 21 ~~~a~~lv~~L~~~GV~~vfg~P------G~~~~~l~~al~~~~~ 59 (565)
T 2nxw_A 21 MKLAEALLRALKDRGAQAMFGIP------GDFALPFFKVAEETQI 59 (565)
T ss_dssp CBHHHHHHHHHHHTTCCCEEECC------CGGGHHHHHHHHHHCS
T ss_pred cCHHHHHHHHHHHcCCCEEEECC------CcchHHHHHHHHhCCC
Confidence 35789999999999999985443 4567778888877653
No 238
>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}
Probab=25.00 E-value=1.5e+02 Score=21.16 Aligned_cols=41 Identities=20% Similarity=0.467 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 66 ASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 66 A~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
+.-+|+.+|+++.+.|.+-+..+.+ . ..+...+++.+++.|
T Consensus 40 s~GIG~aia~~la~~G~~V~~~~~~-~---~~~~~~~~~~l~~~~ 80 (271)
T 3v2g_A 40 SRGIGAAIAKRLALEGAAVALTYVN-A---AERAQAVVSEIEQAG 80 (271)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESS-C---HHHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHCCCEEEEEeCC-C---HHHHHHHHHHHHhcC
Confidence 3468888888888888876655532 2 234455555555444
No 239
>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A
Probab=24.98 E-value=47 Score=23.29 Aligned_cols=39 Identities=21% Similarity=0.148 Sum_probs=25.2
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.|-+.. .......+..+.+.+.+.||++
T Consensus 23 ~l~~~~~~G~~~vEl~~--~~~~~~~~~~~~~~l~~~gl~~ 61 (275)
T 3qc0_A 23 AVDICLKHGITAIAPWR--DQVAAIGLGEAGRIVRANGLKL 61 (275)
T ss_dssp HHHHHHHTTCCEEECBH--HHHHHHCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHcCCCEEEecc--ccccccCHHHHHHHHHHcCCce
Confidence 34666778888876552 1223345777888888888765
No 240
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai}
Probab=24.92 E-value=1.6e+02 Score=20.42 Aligned_cols=44 Identities=7% Similarity=0.149 Sum_probs=29.7
Q ss_pred HHHHHHHhhCCCCEEEEec--CC-----------------CcchhhHHHHHHHHHHHcCcccC
Q 033650 71 KLLGERLLLKDIPAVSVFL--KR-----------------EQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~--r~-----------------~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
+..-+.+++.|++.|-+-. .+ ...+--++..|++.+.+.||.++
T Consensus 45 ~~~l~~~k~~G~N~vRv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~a~~~Gi~vi 107 (351)
T 3vup_A 45 EPEFKKLHDAGGNSMRLWIHIQGETTPAFNDQGFVTGPDKQGTMLDDMKDLLDTAKKYNILVF 107 (351)
T ss_dssp HHHHHHHHHTTCCEEEEEEEETTSSSSEECTTSCEEESCSSSCHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCcEEEECcccccccCcccccccccccccccHHHHHHHHHHHHHHHHCCCeEE
Confidence 3445678899999886510 00 01223468999999999999763
No 241
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=24.88 E-value=1.3e+02 Score=21.08 Aligned_cols=40 Identities=10% Similarity=0.030 Sum_probs=28.6
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
...++.+.++|.+-+++..-.+ ..-+..+.+.+++.|++.
T Consensus 73 ~~~~~~~~~aGad~i~vh~~~~---~~~~~~~~~~~~~~g~~~ 112 (218)
T 3jr2_A 73 AILSRMAFEAGADWITVSAAAH---IATIAACKKVADELNGEI 112 (218)
T ss_dssp HHHHHHHHHHTCSEEEEETTSC---HHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHhcCCCEEEEecCCC---HHHHHHHHHHHHHhCCcc
Confidence 3467888899999998875222 123678888888888753
No 242
>3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1}
Probab=24.87 E-value=1.3e+02 Score=21.29 Aligned_cols=42 Identities=17% Similarity=0.379 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
.-+|+.+|+++.+.|.+-+.++ |.. +-..+...+.+.+++.|
T Consensus 21 ~GIG~aia~~la~~G~~V~~~~-r~~-~~~~~~~~~~~~~~~~~ 62 (262)
T 3ksu_A 21 KNLGALTAKTFALESVNLVLHY-HQA-KDSDTANKLKDELEDQG 62 (262)
T ss_dssp SHHHHHHHHHHTTSSCEEEEEE-SCG-GGHHHHHHHHHHHHTTT
T ss_pred chHHHHHHHHHHHCCCEEEEEe-cCc-cCHHHHHHHHHHHHhcC
Confidence 3477788888888777655444 321 22234455555555444
No 243
>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}
Probab=24.87 E-value=1.1e+02 Score=21.58 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=25.5
Q ss_pred HHHHHhhCCCCEEEEecCCCcch------hhHHHHHHHHHHHcCc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRY------HGKVKAIIDSLREAGV 111 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~y------hGrv~a~~~~lre~Gl 111 (114)
..+.+.+.|++.+.+.......+ ...+..+.+.+++.||
T Consensus 19 ~~~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl 63 (270)
T 3aam_A 19 AVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGG 63 (270)
T ss_dssp HHHHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCC
Confidence 34567777888876654332211 3567888888888888
No 244
>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}
Probab=24.72 E-value=1.6e+02 Score=20.49 Aligned_cols=41 Identities=10% Similarity=0.131 Sum_probs=29.5
Q ss_pred HHHHHhhCCCCEEEEecCCC-----------cch-hhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKRE-----------QRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~-----------~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
..+++.+.|++.|.+..... +.. ...++.+.+.+.+.||++
T Consensus 27 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i 79 (262)
T 3p6l_A 27 ALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAASKGIKI 79 (262)
T ss_dssp HHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHHHcCCeE
Confidence 56778889999998763210 111 346899999999999975
No 245
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=24.72 E-value=76 Score=24.34 Aligned_cols=40 Identities=13% Similarity=0.190 Sum_probs=27.2
Q ss_pred HHHHHhhCCCCEEEEecCCCcchh-------------hHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYH-------------GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yh-------------Grv~a~~~~lre~Gl~~ 113 (114)
-.++|.+.|++.+.++. .....| .++...++.+++.|+++
T Consensus 101 ~i~~a~~~g~~~v~i~~-~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v 153 (337)
T 3ble_A 101 TVDWIKDSGAKVLNLLT-KGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKI 153 (337)
T ss_dssp HHHHHHHHTCCEEEEEE-ECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred hHHHHHHCCCCEEEEEE-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE
Confidence 46777888888887764 344444 35667777778888764
No 246
>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A
Probab=24.66 E-value=1.6e+02 Score=20.86 Aligned_cols=41 Identities=12% Similarity=0.215 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 66 ASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 66 A~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
+.-+|+.+|+++.+.|.+-+..+.| . ......+.+.+++.|
T Consensus 27 s~gIG~aia~~l~~~G~~V~~~~~~-~---~~~~~~~~~~~~~~~ 67 (270)
T 3is3_A 27 GRGIGAAVAVHLGRLGAKVVVNYAN-S---TKDAEKVVSEIKALG 67 (270)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEESS-C---HHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHCCCEEEEEcCC-C---HHHHHHHHHHHHhcC
Confidence 3468888888888888765554532 2 233444444444443
No 247
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=24.61 E-value=1.4e+02 Score=22.96 Aligned_cols=52 Identities=10% Similarity=0.158 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCE----EEEecCCCcc-------hhhHHHHHHHHHHHcCcccC
Q 033650 63 VAAASKIGKLLGERLLLKDIPA----VSVFLKREQR-------YHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~~----v~~d~r~~~~-------yhGrv~a~~~~lre~Gl~~~ 114 (114)
+.++..++..++..+.+.|+.. |.+..++... ...-...+.+.+++.||+++
T Consensus 164 ~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~ 226 (437)
T 3sx6_A 164 FGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAY 226 (437)
T ss_dssp CHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEE
T ss_pred CcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEE
Confidence 3345667777888888888752 5554344422 12234567788999999863
No 248
>4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A*
Probab=24.45 E-value=1.6e+02 Score=20.98 Aligned_cols=40 Identities=15% Similarity=0.314 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
.-+|+.+|+++.+.|.+-+..+ |.. .+....+.+.+.+.|
T Consensus 38 ~gIG~aia~~la~~G~~V~~~~-~~~---~~~~~~~~~~~~~~~ 77 (269)
T 4dmm_A 38 RGIGRAIALELAAAGAKVAVNY-ASS---AGAADEVVAAIAAAG 77 (269)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SSC---HHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHCCCEEEEEe-CCC---hHHHHHHHHHHHhcC
Confidence 3578888888888887655555 322 233444444444433
No 249
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=24.44 E-value=1.9e+02 Score=20.85 Aligned_cols=46 Identities=24% Similarity=0.238 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhh-CCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 68 KIGKLLGERLLL-KDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 68 ~vG~~la~ra~e-~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
..++.+++-+.+ .|.+++.+--.....| .++...|.+++.+.|+++
T Consensus 134 ~~~~~~~~~l~~~~g~~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v 181 (366)
T 3td9_A 134 FQGAAMAVFAYKNLGAKRVVVFTDVEQDYSVGLSNFFINKFTELGGQV 181 (366)
T ss_dssp HHHHHHHHHHHHTSCCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHhcCCcEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEE
Confidence 345667777755 5999875431112334 357889999999999875
No 250
>1o4v_A Phosphoribosylaminoimidazole mutase PURE; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 1.77A {Thermotoga maritima} SCOP: c.23.8.1
Probab=24.42 E-value=1.4e+02 Score=21.61 Aligned_cols=41 Identities=15% Similarity=0.151 Sum_probs=29.1
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.++-+.+.||..- +..-+.++--.++..+++.+.+.|++++
T Consensus 32 a~~~L~~~Gi~~d-v~V~SaHR~p~~l~~~~~~a~~~g~~Vi 72 (183)
T 1o4v_A 32 AAEILEEFGIDYE-ITIVSAHRTPDRMFEYAKNAEERGIEVI 72 (183)
T ss_dssp HHHHHHHTTCEEE-EEECCTTTCHHHHHHHHHHTTTTTCCEE
T ss_pred HHHHHHHcCCCeE-EEEEcccCCHHHHHHHHHHHHhCCCcEE
Confidence 4445567898832 2223688888999999999988887753
No 251
>2gfq_A UPF0204 protein PH0006; structural genomics, PSI, Pro structure initiative, midwest center for structural genomic unknown function; 1.75A {Pyrococcus horikoshii} SCOP: c.56.7.1
Probab=24.34 E-value=1.2e+02 Score=23.49 Aligned_cols=38 Identities=13% Similarity=0.119 Sum_probs=26.9
Q ss_pred HHHhhC---CCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 75 ERLLLK---DIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 75 ~ra~e~---gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.+|.++ |++.+++| +.+ ...+--..+.+.+.+.||+++
T Consensus 254 ~~ai~~~~~~~~~~~iD-~K~-~k~~~R~~i~~~l~~lgi~v~ 294 (298)
T 2gfq_A 254 IKALNRFGEKVEAIYVD-WKG-SRGETRQLAKSLAQELGLEFI 294 (298)
T ss_dssp HHHHTCBSSCCCEEEEE-STT-SCHHHHHHHHHHHHHHTCEEE
T ss_pred HHHHHhhcCCCCEEEEe-cCC-CCHHHHHHHHHHHHHCCCEEE
Confidence 566666 99999999 444 334456677777888898864
No 252
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=24.33 E-value=94 Score=24.48 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhCCCCEEEEec
Q 033650 68 KIGKLLGERLLLKDIPAVSVFL 89 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~ 89 (114)
.+|..+|+.+.+.|++-+++|.
T Consensus 14 r~G~~va~~L~~~g~~vvvId~ 35 (413)
T 3l9w_A 14 RFGQITGRLLLSSGVKMVVLDH 35 (413)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEEC
Confidence 5899999999999999999994
No 253
>4grd_A N5-CAIR mutase, phosphoribosylaminoimidazole carboxylase catalyti; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures; 1.85A {Burkholderia cenocepacia}
Probab=24.18 E-value=1.7e+02 Score=20.99 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred HHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 74 GERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 74 a~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
++-+.+.||..- +..-+.|+-..++..+++.+++.|++++
T Consensus 32 ~~~l~~~gi~~e-v~V~saHR~p~~l~~~~~~a~~~g~~Vi 71 (173)
T 4grd_A 32 VAILQEFGVPYE-AKVVSAHRMPDEMFDYAEKARERGLRAI 71 (173)
T ss_dssp HHHHHHTTCCEE-EEECCTTTSHHHHHHHHHHHTTTTCSEE
T ss_pred HHHHHHcCCCEE-EEEEccccCHHHHHHHHHHHHhcCCeEE
Confidence 445568899832 1223788888999999999999998753
No 254
>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=24.16 E-value=75 Score=23.33 Aligned_cols=41 Identities=17% Similarity=0.248 Sum_probs=28.7
Q ss_pred HHHHHhhCCCCEEEEecCC--Ccchhh---------HHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKR--EQRYHG---------KVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~--~~~yhG---------rv~a~~~~lre~Gl~~ 113 (114)
..+++.+.|++.|.+.... ...+.+ .++.+.+.+++.||++
T Consensus 41 ~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~~GL~i 92 (305)
T 3obe_A 41 GLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDDAGLRI 92 (305)
T ss_dssp HHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHHCCCeE
Confidence 4567888999999876321 111112 6889999999999975
No 255
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=24.15 E-value=1.5e+02 Score=21.31 Aligned_cols=39 Identities=23% Similarity=0.385 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
.-+|+.+|+++.+.|.+-+..+ |. ..+...+++.+++.|
T Consensus 14 ~GIG~aia~~la~~G~~V~~~~-r~----~~~~~~~~~~l~~~~ 52 (264)
T 3tfo_A 14 GGIGEGIARELGVAGAKILLGA-RR----QARIEAIATEIRDAG 52 (264)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SS----HHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHCCCEEEEEE-CC----HHHHHHHHHHHHhcC
Confidence 4688889999988897655555 43 234555555555544
No 256
>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2
Probab=23.98 E-value=1.4e+02 Score=22.77 Aligned_cols=41 Identities=10% Similarity=0.040 Sum_probs=29.5
Q ss_pred HHHHHHhhCCCCEEEEecCCCcchhh---HHHHHHHHHHHcCccc
Q 033650 72 LLGERLLLKDIPAVSVFLKREQRYHG---KVKAIIDSLREAGVKL 113 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~yhG---rv~a~~~~lre~Gl~~ 113 (114)
-..++|.+.|.++|-|| -+...|.. .-+.+++-+...|+.+
T Consensus 88 e~i~~ai~~GFtSVMiD-gS~lp~eeNi~~Tk~vv~~ah~~gvsV 131 (286)
T 1gvf_A 88 DDIRRKVHAGVRSAMID-GSHFPFAENVKLVKSVVDFCHSQDCSV 131 (286)
T ss_dssp HHHHHHHHTTCCEEEEC-CTTSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCeEEEC-CCCCCHHHHHHHHHHHHHHHHHcCCEE
Confidence 45678888999999888 46666654 5566777777777653
No 257
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*
Probab=23.86 E-value=1.2e+02 Score=23.09 Aligned_cols=34 Identities=18% Similarity=-0.057 Sum_probs=14.7
Q ss_pred HHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHH
Q 033650 74 GERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLR 107 (114)
Q Consensus 74 a~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lr 107 (114)
++++.+.|++.+.+-|--|...-..+..+.+.++
T Consensus 175 ~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~ 208 (337)
T 3ble_A 175 VEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLI 208 (337)
T ss_dssp HHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHH
Confidence 3444445555544433333333334444444443
No 258
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=23.83 E-value=1.5e+02 Score=19.03 Aligned_cols=22 Identities=5% Similarity=-0.227 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhhCCCCEEEEec
Q 033650 68 KIGKLLGERLLLKDIPAVSVFL 89 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~ 89 (114)
.+|..+++.+.+.|.+-+++|.
T Consensus 13 ~vG~~la~~L~~~g~~V~vid~ 34 (153)
T 1id1_A 13 ILAINTILQLNQRGQNVTVISN 34 (153)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHHCCCCEEEEEC
Confidence 5889999999999998888883
No 259
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=23.73 E-value=39 Score=25.35 Aligned_cols=16 Identities=38% Similarity=0.565 Sum_probs=13.9
Q ss_pred hHHHHHHHHHHHcCcc
Q 033650 97 GKVKAIIDSLREAGVK 112 (114)
Q Consensus 97 Grv~a~~~~lre~Gl~ 112 (114)
-|++|+-|+||.+||.
T Consensus 226 qrikAlEdalR~HGLI 241 (242)
T 3c9i_A 226 RRTKAMEDALRAHGLI 241 (242)
T ss_dssp HHHHHHHHHHHHHTSB
T ss_pred HHHHHHHHHHHhccCC
Confidence 4799999999999983
No 260
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A
Probab=23.64 E-value=1e+02 Score=22.38 Aligned_cols=41 Identities=5% Similarity=0.071 Sum_probs=29.1
Q ss_pred HHHHhhCCCCEEEEecCCC--c--chhhHHHHHHHHHHHcCcccC
Q 033650 74 GERLLLKDIPAVSVFLKRE--Q--RYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 74 a~ra~e~gI~~v~~d~r~~--~--~yhGrv~a~~~~lre~Gl~~~ 114 (114)
.+.+++.|++.|-+....+ + .+-.++..+++.+.+.||.+|
T Consensus 37 ~~~i~~~G~N~VRi~~~~~~~~~~~~~~~ld~~v~~a~~~Gi~Vi 81 (294)
T 2whl_A 37 IPAIAEQGANTIRIVLSDGGQWEKDDIDTIREVIELAEQNKMVAV 81 (294)
T ss_dssp HHHHHHTTCSEEEEEECCSSSSCCCCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHHHHcCCCEEEEEecCCCccCccHHHHHHHHHHHHHHCCCEEE
Confidence 3456789999886643111 2 234589999999999999864
No 261
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*
Probab=23.58 E-value=1.3e+02 Score=22.31 Aligned_cols=20 Identities=5% Similarity=-0.089 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHhhCCC
Q 033650 63 VAAASKIGKLLGERLLLKDI 82 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI 82 (114)
.+.+...-....+.|++.|+
T Consensus 116 ~~e~l~~~~~~i~~a~~~G~ 135 (298)
T 2cw6_A 116 IEESFQRFDAILKAAQSANI 135 (298)
T ss_dssp HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCC
Confidence 33333444444455555554
No 262
>3na5_A Phosphoglucomutase; isomerase, metal binding; HET: BTB; 1.70A {Salmonella enterica subsp} PDB: 3olp_A 2fuv_A*
Probab=23.39 E-value=2.1e+02 Score=23.63 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHHHHhhCCCC-EEEEecCCCcchhhH--HHHHHHHHHHcCcccC
Q 033650 60 TRDVAAASKIGKLLGERLLLKDIP-AVSVFLKREQRYHGK--VKAIIDSLREAGVKLL 114 (114)
Q Consensus 60 ~~n~~AA~~vG~~la~ra~e~gI~-~v~~d~r~~~~yhGr--v~a~~~~lre~Gl~~~ 114 (114)
.-|.+-+..+|..+|.-.++.|.. .|++= + -.++.+. .++++++|..+|++++
T Consensus 79 ~ln~~~v~~i~~A~a~~l~~~~~~~~VvVG-~-D~R~~S~~~~~~a~~~L~a~Gi~V~ 134 (570)
T 3na5_A 79 SFNEPHILAIAQAIAEERAKNGITGPCYVG-K-DTHALSEPAFISVLEVLAANGVDVI 134 (570)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTTCCSCEEEE-E-CSSTTHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCeEEEE-e-CCCcccHHHHHHHHHHHHHCCCEEE
Confidence 357889999999999988887753 34432 1 1123333 5667799999999863
No 263
>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}
Probab=23.36 E-value=2.2e+02 Score=23.26 Aligned_cols=48 Identities=4% Similarity=-0.098 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchh-----------hHHHHHHHHHHHcC
Q 033650 62 DVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYH-----------GKVKAIIDSLREAG 110 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yh-----------Grv~a~~~~lre~G 110 (114)
+.+.|-.-...+.++|.++|.++|-+|. +...+. -|.+.+.+.+.+.|
T Consensus 105 ~~~~am~~a~e~i~~aI~AGFtSVMiD~-S~~p~eeNi~lt~evva~rtaeL~~~A~~~~ 163 (450)
T 3txv_A 105 PADEAMAKAEAMITAYAKAGFTKLHLDT-SMGCAGEPTALPDATTAARAARLAAVAEDAV 163 (450)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCEEEECC-CBCCSSSCSBCCHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHcCCCEEEECC-CCCchhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 4667777788999999999999999993 444332 25566666666643
No 264
>2f7l_A 455AA long hypothetical phospho-sugar mutase; phosphomannomutase, phosphoglucomutase, isomerase; 2.80A {Sulfolobus tokodaii}
Probab=23.35 E-value=2.1e+02 Score=22.48 Aligned_cols=52 Identities=23% Similarity=0.234 Sum_probs=36.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhH--HHHHHHHHHHcCccc
Q 033650 58 GCTRDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGK--VKAIIDSLREAGVKL 113 (114)
Q Consensus 58 ~~~~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGr--v~a~~~~lre~Gl~~ 113 (114)
+..-|.+.+..+|..+|.-+.+. ..|++= .-.++++. -.+++.++..+|+++
T Consensus 15 ~~~lt~~~v~~~~~a~~~~l~~~--~~VvIG--~D~R~ss~~~~~a~a~gl~~~G~~V 68 (455)
T 2f7l_A 15 NKELTPELVLKLSKAIGTFFGKN--SKILVG--RDVRAGGDMLVKIVEGGLLSVGVEV 68 (455)
T ss_dssp TTTBCHHHHHHHHHHHHHHHCTT--CEEEEE--ECSCTTHHHHHHHHHHHHHHTTCEE
T ss_pred CCCcCHHHHHHHHHHHHHHHccC--CeEEEE--ECCCCCHHHHHHHHHHHHHHCCCcE
Confidence 33468889999999999988653 345443 12234554 468999999999976
No 265
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=23.35 E-value=1.5e+02 Score=21.50 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 66 ASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 66 A~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
+.-+|+.+|+++.+.|.+-+..+ |.. .+...+++.+.+.|
T Consensus 40 s~gIG~~la~~l~~~G~~V~~~~-r~~----~~~~~~~~~l~~~~ 79 (301)
T 3tjr_A 40 ASGIGLATATEFARRGARLVLSD-VDQ----PALEQAVNGLRGQG 79 (301)
T ss_dssp TSHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEE-CCH----HHHHHHHHHHHhcC
Confidence 34688888888888887655445 432 34445555555444
No 266
>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}
Probab=23.34 E-value=1.5e+02 Score=21.14 Aligned_cols=40 Identities=18% Similarity=0.291 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 66 ASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 66 A~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
+.-+|+.+|+++.+.|.+-+.++ |.. .+...+.+.+.+.|
T Consensus 37 s~GIG~aia~~la~~G~~V~~~~-r~~----~~~~~~~~~~~~~~ 76 (270)
T 3ftp_A 37 SRGIGRAIALELARRGAMVIGTA-TTE----AGAEGIGAAFKQAG 76 (270)
T ss_dssp SSHHHHHHHHHHHHTTCEEEEEE-SSH----HHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHCCCEEEEEe-CCH----HHHHHHHHHHHhcC
Confidence 34688888888888887655555 432 23444444444443
No 267
>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*
Probab=23.33 E-value=1.3e+02 Score=21.30 Aligned_cols=41 Identities=7% Similarity=0.050 Sum_probs=29.4
Q ss_pred HHHHHhhCCCCEEEEecCCCc-chhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQ-RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~-~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.|.+...... .....+..+.+.+++.||.+
T Consensus 22 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~gl~i 63 (294)
T 3vni_A 22 YIEKVAKLGFDILEIAASPLPFYSDIQINELKACAHGNGITL 63 (294)
T ss_dssp HHHHHHHHTCSEEEEESTTGGGCCHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEEecCcccCCcCHHHHHHHHHHHHHcCCeE
Confidence 456677889999987742211 12457899999999999975
No 268
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=23.21 E-value=1.6e+02 Score=20.24 Aligned_cols=38 Identities=13% Similarity=0.194 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA 109 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~ 109 (114)
.-+|..+|+++.+.|.+-+.++ |. ..+...+.+.+++.
T Consensus 24 ~gIG~~ia~~l~~~G~~V~~~~-r~----~~~~~~~~~~~~~~ 61 (247)
T 3i1j_A 24 RGIGAAAARAYAAHGASVVLLG-RT----EASLAEVSDQIKSA 61 (247)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SC----HHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHCCCEEEEEe-cC----HHHHHHHHHHHHhc
Confidence 4688889999888887655555 43 23344444444443
No 269
>2pfu_A Biopolymer transport EXBD protein; TONB system, proton motive force, periplasmic domain; NMR {Escherichia coli}
Probab=23.18 E-value=1.3e+02 Score=18.10 Aligned_cols=21 Identities=19% Similarity=0.278 Sum_probs=17.7
Q ss_pred CcchhhHHHHHHHHHHHcCcc
Q 033650 92 EQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 92 ~~~yhGrv~a~~~~lre~Gl~ 112 (114)
....+|.|-.+++.++++|+.
T Consensus 66 ~~~~y~~vv~vmd~l~~aG~~ 86 (99)
T 2pfu_A 66 KTVDYETLMKVMDTLHQAGYL 86 (99)
T ss_dssp TTCCHHHHHHHHHHHHHTCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCC
Confidence 445688999999999999984
No 270
>3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti}
Probab=23.18 E-value=1.7e+02 Score=21.72 Aligned_cols=43 Identities=23% Similarity=0.234 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCC-CcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKR-EQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~-~~~yhGrv~a~~~~lre~G 110 (114)
.-+|..+|+++.+.|.+-+..+ |. ..+-..++..+.+.+++.|
T Consensus 15 ~GIG~aia~~L~~~G~~V~~~~-r~~~~r~~~~~~~l~~~~~~~~ 58 (324)
T 3u9l_A 15 SGFGRLTAEALAGAGHRVYASM-RDIVGRNASNVEAIAGFARDND 58 (324)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SCTTTTTHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHCCCEEEEec-CcccccCHHHHHHHHHHHHhcC
Confidence 3578888888888886544444 33 2223344555555555544
No 271
>2hqb_A Transcriptional activator of COMK gene; berkeley structure genomics center target 1957B, structural genomics, PSI; 2.70A {Bacillus halodurans}
Probab=23.00 E-value=1.8e+02 Score=21.00 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCc
Q 033650 61 RDVAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGV 111 (114)
Q Consensus 61 ~n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl 111 (114)
.|.++++..|. +|..+.+ -.++-|- .+..... |+..|.+++++.|+
T Consensus 108 d~~~g~~lag~-la~~l~~--~~~Ig~i-~g~~~~~-r~~Gf~~~~~~~~~ 153 (296)
T 2hqb_A 108 EGYAMGYFGGM-VAASMSE--THKVGVI-AAFPWQP-EVEGFVDGAKYMNE 153 (296)
T ss_dssp CCHHHHHHHHH-HHHHTCS--SSEEEEE-ESCTTCH-HHHHHHHHHHHTTC
T ss_pred chHHHHHHHHH-HHHhhcc--CCeEEEE-cCcCchh-hHHHHHHHHHHhCC
Confidence 46788999986 4444333 4666443 2322223 99999999999986
No 272
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=22.93 E-value=83 Score=28.48 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 70 GKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 70 G~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
-+.|.++|++.|++.+.+-|.+ ..+ | +..|.+.+++.||++|
T Consensus 134 ~~eLv~~A~~~G~~aiAITDH~-~~~-G-~~~~~~~a~~~gIk~I 175 (1041)
T 3f2b_A 134 VTKLIEQAKKWGHPAIAVTDHA-VVQ-S-FPEAYSAAKKHGMKVI 175 (1041)
T ss_dssp HHHHHHHHHHTTCSCEEECCBS-CCT-T-HHHHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHCCCCEEEEeccc-chh-h-HHHHHHHHHHCCCEEE
Confidence 3567889999999999888743 233 3 3345677788998864
No 273
>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2
Probab=22.83 E-value=1.3e+02 Score=21.30 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKRE 92 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~ 92 (114)
.+|..+++.+++.|.+-..++ |..
T Consensus 15 ~iG~~l~~~L~~~g~~V~~l~-R~~ 38 (308)
T 1qyc_A 15 YIGRHVAKASLDLGHPTFLLV-RES 38 (308)
T ss_dssp TTHHHHHHHHHHTTCCEEEEC-CCC
T ss_pred HHHHHHHHHHHhCCCCEEEEE-CCc
Confidence 378888888888886655555 543
No 274
>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*
Probab=22.79 E-value=1.4e+02 Score=21.53 Aligned_cols=49 Identities=14% Similarity=0.144 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHHHHHHhhCCCCEEEEecCCCc--c-hhhHHHHHHHHHHHc--Ccc
Q 033650 62 DVAAASKIGKLLGERLLLKDIPAVSVFLKREQ--R-YHGKVKAIIDSLREA--GVK 112 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~--~-yhGrv~a~~~~lre~--Gl~ 112 (114)
|..+++..++.|++.+. .|-.++.+- .|.. . -..|...|.+++.+. |++
T Consensus 109 ~~~~g~~~~~~L~~~~~-~g~~~i~~i-~g~~~~~~~~~r~~g~~~~l~~~~~~~~ 162 (316)
T 1tjy_A 109 PKQLGSMLVEMAAHQVD-KEKAKVAFF-YSSPTVTDQNQWVKEAKAKISQEHPGWE 162 (316)
T ss_dssp HHHHHHHHHHHHHHHHC-SSSEEEEEE-ESCSSCHHHHHHHHHHHHHHHHHCTTEE
T ss_pred HHHHHHHHHHHHHHHcC-CCCCEEEEE-EcCCCChhHHHHHHHHHHHHHhhCCCcE
Confidence 44455555555554331 477777665 2322 1 246899999999887 554
No 275
>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0
Probab=22.55 E-value=2e+02 Score=20.36 Aligned_cols=24 Identities=8% Similarity=-0.050 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKR 91 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~ 91 (114)
.-+|..+|+++.+.|.+-+.+| |.
T Consensus 20 ~gIG~a~a~~l~~~G~~V~~~~-r~ 43 (281)
T 3s55_A 20 RGMGRSHAVALAEAGADIAICD-RC 43 (281)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-CC
T ss_pred chHHHHHHHHHHHCCCeEEEEe-CC
Confidence 4589999999999998766556 44
No 276
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=22.46 E-value=47 Score=23.29 Aligned_cols=44 Identities=11% Similarity=0.137 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhhCCCCEEEEecCCCcc----hhhHHHHHHHHHHHcC
Q 033650 66 ASKIGKLLGERLLLKDIPAVSVFLKREQR----YHGKVKAIIDSLREAG 110 (114)
Q Consensus 66 A~~vG~~la~ra~e~gI~~v~~d~r~~~~----yhGrv~a~~~~lre~G 110 (114)
-+..|+.+++.+.+.|..++.|-. +... ...|...|.+++++.|
T Consensus 107 ~~~~g~~a~~~L~~~G~~~I~~i~-~~~~~~~~~~~R~~gf~~~l~~~~ 154 (276)
T 3jy6_A 107 NFEAAKAATTAFRQQGYQHVVVLT-SELELSRTRQERYRGILAAAQDVD 154 (276)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEE-ECSTTCHHHHHHHHHHHTTCSEEE
T ss_pred hHHHHHHHHHHHHHcCCCeEEEEe-cCCCCCchHHHHHHHHHHHHHhCC
Confidence 345677777777788999986652 3221 2568999999888775
No 277
>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}
Probab=22.38 E-value=1.8e+02 Score=20.07 Aligned_cols=22 Identities=14% Similarity=-0.031 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHhhCCCCEEEEe
Q 033650 67 SKIGKLLGERLLLKDIPAVSVF 88 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d 88 (114)
--+|..+++++.+.|.+-+.++
T Consensus 23 ggiG~~la~~l~~~G~~V~~~~ 44 (260)
T 3awd_A 23 QNIGLACVTALAEAGARVIIAD 44 (260)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE
T ss_pred chHHHHHHHHHHHCCCEEEEEe
Confidence 4688888888888887544445
No 278
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=22.34 E-value=1.7e+02 Score=21.48 Aligned_cols=46 Identities=15% Similarity=0.115 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHc--Cccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREA--GVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~--Gl~~ 113 (114)
...+..+++-+.+.|.+++.+-. ....| .+....|.+.+.+. |+++
T Consensus 127 ~~~~~~~~~~l~~~g~~~vaii~-~~~~~g~~~~~~~~~~l~~~~~g~~v 175 (387)
T 3i45_A 127 YMQAAMLAAEAAKLPITRWATIA-PNYEYGQSAVARFKELLLAARPEVTF 175 (387)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEEC-CSSHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHHHHcCCCeEEEEe-CCchHhHHHHHHHHHHHHHhCCCcEE
Confidence 44566677777888999886552 33344 36789999999998 7764
No 279
>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A
Probab=22.32 E-value=2e+02 Score=20.41 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=28.6
Q ss_pred HHHHHhhCCCCEEEEecCCCc------c-hhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQ------R-YHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~------~-yhGrv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.|.+...... . -...+..+.+.+++.||.+
T Consensus 35 ~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i 82 (295)
T 3cqj_A 35 RLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRV 82 (295)
T ss_dssp HHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEE
T ss_pred HHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeE
Confidence 356677899999877632221 0 1356888999999999975
No 280
>1gtk_A Porphobilinogen deaminase; lyase, biosynthesis of linear tetrapyrrole, all alpha/beta; HET: DPM; 1.66A {Escherichia coli} SCOP: c.94.1.1 d.50.2.1 PDB: 1ah5_A* 2ypn_A* 1ypn_A* 1pda_A*
Probab=22.29 E-value=1.1e+02 Score=23.85 Aligned_cols=45 Identities=18% Similarity=0.217 Sum_probs=29.2
Q ss_pred ceeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhhCCCCEE
Q 033650 29 YVSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLLKDIPAV 85 (114)
Q Consensus 29 hi~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e~gI~~v 85 (114)
++++.|.+..+.+.+ ..+- .++.+.|..+|..+|+..++.|-.++
T Consensus 258 ~l~g~v~s~dG~~~~-~~~~-----------~g~~~~a~~lG~~la~~ll~~ga~~i 302 (313)
T 1gtk_A 258 WLRALVGAPDGSQII-RGER-----------RGAPQDAEQMGISLAEELLNNGAREI 302 (313)
T ss_dssp EEEEEEECTTSSCEE-EEEE-----------EECGGGHHHHHHHHHHHHHHTTHHHH
T ss_pred EEEEEEEcCCCCEEE-EEEE-----------EcCHHHHHHHHHHHHHHHHHcCHHHH
Confidence 566667765555543 3321 12445688999999999998875543
No 281
>4aie_A Glucan 1,6-alpha-glucosidase; hydrolase, glycoside hydrolase 13; HET: MES GOL; 2.05A {Lactobacillus acidophilus ncfm}
Probab=22.14 E-value=64 Score=25.39 Aligned_cols=40 Identities=18% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHhhCCCCEEEEec--CCCcchhh-----------------HHHHHHHHHHHcCcccC
Q 033650 75 ERLLLKDIPAVSVFL--KREQRYHG-----------------KVKAIIDSLREAGVKLL 114 (114)
Q Consensus 75 ~ra~e~gI~~v~~d~--r~~~~yhG-----------------rv~a~~~~lre~Gl~~~ 114 (114)
.-+++.||+.|.+-+ ..+..+|| -.++|++++.+.||++|
T Consensus 39 dYLk~LGvt~I~L~Pi~~~~~~~~GYd~~dy~~vdp~~Gt~~dfk~Lv~~aH~~Gi~Vi 97 (549)
T 4aie_A 39 DYLEKLGIDAIWLSPVYQSPGVDNGYDISDYEAIDPQYGTMADMDELISKAKEHHIKIV 97 (549)
T ss_dssp HHHHHHTCSEEEECCCEECCCTTTTSSCSEEEEECTTTCCHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHCCCCEEEeCCCcCCCCCCCCcCccCCCCcCcccCCHHHHHHHHHHHHHCCCEEE
Confidence 456889999996532 12222333 48999999999999875
No 282
>3qua_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.10A {Mycobacterium smegmatis str}
Probab=22.07 E-value=2.2e+02 Score=20.37 Aligned_cols=41 Identities=17% Similarity=0.219 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
.++|+.+|+.||++ |+.=| . -|+ +.|-..|+++++.++|-.
T Consensus 39 ~~~A~~lg~~La~~----g~~lV--~-GGG--~~GlM~a~~~gA~~~GG~ 79 (199)
T 3qua_A 39 LELAAEVGSSIAAR----GWTLV--S-GGG--NVSAMGAVAQAARAKGGH 79 (199)
T ss_dssp HHHHHHHHHHHHHT----TCEEE--E-CCB--CSHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHC----CCEEE--E-CCC--ccCHHHHHHHHHHHcCCc
Confidence 35677788777765 55433 3 234 349999999999998754
No 283
>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0
Probab=22.06 E-value=1.7e+02 Score=20.56 Aligned_cols=38 Identities=13% Similarity=0.261 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
-+|+.+|+++.+.|.+-+..+ |.. .+...+.+.+++.|
T Consensus 22 gIG~aia~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~ 59 (264)
T 3ucx_A 22 ALGTTLARRCAEQGADLVLAA-RTV----ERLEDVAKQVTDTG 59 (264)
T ss_dssp THHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCcCEEEEEe-CCH----HHHHHHHHHHHhcC
Confidence 478888888888887655445 432 33444444444443
No 284
>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4
Probab=22.04 E-value=1.4e+02 Score=20.65 Aligned_cols=41 Identities=5% Similarity=-0.051 Sum_probs=27.5
Q ss_pred HHHHHhhCCCCEEEEecCCC--cc-hhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKRE--QR-YHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~--~~-yhGrv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.|.+..... +. ....+..+.+.+++.||++
T Consensus 24 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~ 67 (272)
T 2q02_A 24 FFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEI 67 (272)
T ss_dssp HHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeE
Confidence 45667788999887763111 11 2346788888889999875
No 285
>3sbx_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: AMP; 2.50A {Mycobacterium marinum M}
Probab=22.01 E-value=1.7e+02 Score=20.72 Aligned_cols=41 Identities=17% Similarity=0.201 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
.++|+.+|+.||++ |+.=| . -|+ +.|-..|+++++.++|-.
T Consensus 30 ~~~A~~lg~~la~~----g~~lv--~-GGG--~~GlM~a~~~ga~~~GG~ 70 (189)
T 3sbx_A 30 LELAGAVGAAIAAR----GWTLV--W-GGG--HVSAMGAVSSAARAHGGW 70 (189)
T ss_dssp HHHHHHHHHHHHHT----TCEEE--E-CCB--CSHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHC----CCEEE--E-CCC--ccCHHHHHHHHHHHcCCc
Confidence 35788888888864 65433 4 234 259999999999999854
No 286
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: MSE PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Probab=21.90 E-value=1.4e+02 Score=21.98 Aligned_cols=46 Identities=11% Similarity=0.003 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcch-hhHHHHHHHHHHHcCccc
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRY-HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~y-hGrv~a~~~~lre~Gl~~ 113 (114)
..-+..+++-+++.|.+++.+-. ..+-| .+-..+|.+.+.+.|+++
T Consensus 124 ~~~~~~~~~~~~~~g~k~vaii~-~~~~~g~~~~~~~~~~~~~~g~~v 170 (371)
T 4f06_A 124 FQNTVPAAKVAKQKGATKVAIAV-SDYGPGIDAETAFKKTFEAEGGKV 170 (371)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEE-ESSHHHHHHHHHHHHHHHHTTCEE
T ss_pred hhhhhhhhhhhhhcCceEEEEEc-CCcccchhHHHHHHHHHHhcCCce
Confidence 34566677778889999875432 23333 345788999999999875
No 287
>1t35_A Hypothetical protein YVDD, putative lysine decarboxylase; structural genomics target, NYSGXRC, PSI, protein structure initiative; 2.72A {Bacillus subtilis} SCOP: c.129.1.1
Probab=21.79 E-value=1.5e+02 Score=20.85 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcc
Q 033650 63 VAAASKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVK 112 (114)
Q Consensus 63 ~~AA~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~ 112 (114)
.++|+.+|+.||++ |+.=| . -|+ +.|-..|..+++.++|-.
T Consensus 19 ~~~A~~lg~~La~~----g~~lV--~-GGg--~~GiM~aa~~gA~~~gG~ 59 (191)
T 1t35_A 19 KRKAAELGVYMAEQ----GIGLV--Y-GGS--RVGLMGTIADAIMENGGT 59 (191)
T ss_dssp HHHHHHHHHHHHHT----TCEEE--E-CCC--CSHHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHC----CCEEE--E-CCC--cccHHHHHHHHHHHcCCe
Confidence 35677777777764 66544 3 233 249999999999998854
No 288
>1np7_A DNA photolyase; protein with FAD cofactor; HET: DNA FAD; 1.90A {Synechocystis SP} SCOP: a.99.1.1 c.28.1.1
Probab=21.79 E-value=99 Score=24.77 Aligned_cols=42 Identities=5% Similarity=0.111 Sum_probs=30.6
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchh-hHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYH-GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yh-Grv~a~~~~lre~Gl~~ 113 (114)
.+|.+-+.+.|++.|+++ +....+. -+-+++.+.+.+.||.+
T Consensus 90 ~~l~~l~~~~~~~~V~~~-~~~~~~~~~rd~~v~~~l~~~gi~~ 132 (489)
T 1np7_A 90 QVIPQIAKQINAKTIYYH-REVTQEELDVERNLVKQLTILGIEA 132 (489)
T ss_dssp HHHHHHHHHTTEEEEEEE-CCCSHHHHHHHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHcCCCEEEEe-cccCHHHHHHHHHHHHHHHhcCCeE
Confidence 556677788899999887 4433332 56788888888889875
No 289
>4hjh_A Phosphomannomutase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: SEP G6Q; 2.10A {Brucella melitensis BV}
Probab=21.58 E-value=2.4e+02 Score=22.44 Aligned_cols=51 Identities=18% Similarity=0.090 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHHHHhhCC----CCEEEEecCCCcchhhH--HHHHHHHHHHcCcccC
Q 033650 62 DVAAASKIGKLLGERLLLKD----IPAVSVFLKREQRYHGK--VKAIIDSLREAGVKLL 114 (114)
Q Consensus 62 n~~AA~~vG~~la~ra~e~g----I~~v~~d~r~~~~yhGr--v~a~~~~lre~Gl~~~ 114 (114)
|.+.+..+|.-+|.-+.+.| -..|++= .-.++.+. -.+++.++..+|++++
T Consensus 25 t~~~v~~~~~a~a~~l~~~~~~~~~~~VvVG--~D~R~ss~~~~~a~~~gl~a~Gi~V~ 81 (481)
T 4hjh_A 25 NGLPAYAYTMAFVQMLAAKGQLQKGDKVFVG--RDLRPSSPDIAALAMGAIEDAGFTPV 81 (481)
T ss_dssp TTHHHHHHHHHHHHHHHHTTSCCTTCEEEEE--ECSSTTHHHHHHHHHHHHHHTTCEEE
T ss_pred CHHHHHHHHHHHHHHHHhhccccCCCeEEEe--ecCCcCHHHHHHHHHHHHHHCCCEEE
Confidence 55678899999998887653 2445443 12234443 4578899999999863
No 290
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=21.57 E-value=1.8e+02 Score=24.77 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=32.1
Q ss_pred CCCcEEEEEEeCCceeeEEEECCCCeEEEEecchhHhh
Q 033650 16 SEPYVLKMHLTNKYVSAQVVHSPTATVASSASSQEKAL 53 (114)
Q Consensus 16 ~~~~rL~V~~Snkhi~Aqvi~~~~~~~l~saST~e~~~ 53 (114)
.+.|-|-|-.---.|.++++|-.+|++|+++|+....+
T Consensus 204 ~~~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~ 241 (631)
T 3zyy_X 204 QRVFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQA 241 (631)
T ss_dssp CCCEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGG
T ss_pred CCceEEEEEecccceeEEEEECCCCCEEEeecccCCCC
Confidence 44566788888888999999999999999999987764
No 291
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}
Probab=21.56 E-value=96 Score=23.50 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHhhCCCCEEEEecCCCcchh-------------hHHHHHHHHHHHcCccc
Q 033650 74 GERLLLKDIPAVSVFLKREQRYH-------------GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 74 a~ra~e~gI~~v~~d~r~~~~yh-------------Grv~a~~~~lre~Gl~~ 113 (114)
.++|.+.|++.+.++. .....| .++...++.+++.|+++
T Consensus 87 i~~a~~~g~~~v~i~~-~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v 138 (307)
T 1ydo_A 87 LENALEGGINEACVFM-SASETHNRKNINKSTSESLHILKQVNNDAQKANLTT 138 (307)
T ss_dssp HHHHHHHTCSEEEEEE-ESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHhCCcCEEEEEe-ecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEE
No 292
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A* 3a23_A*
Probab=21.45 E-value=1.1e+02 Score=25.38 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHHHHHH-HHHhhCCCCEEEEecCCCc---------------chhhHHHHHHHHHHHcCccc
Q 033650 59 CTRDVAAASKIGKLLG-ERLLLKDIPAVSVFLKREQ---------------RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 59 ~~~n~~AA~~vG~~la-~ra~e~gI~~v~~d~r~~~---------------~yhGrv~a~~~~lre~Gl~~ 113 (114)
..-|.+........++ .-+++.|++-+++|| |=+ ++-+-++++++-+++.|++|
T Consensus 24 ~~~~~~~~~~~ad~~~~~g~~~~G~~~~~iDd-gW~~~~~d~~g~~~~~~~~fP~gl~~l~~~i~~~Glk~ 93 (614)
T 3a21_A 24 AKIDYSVIKKQVDAFVAAGLPAAGYTYINIDE-GWWQGTRDSAGNITVDTAEWPGGMSAITAYIHSKGLKA 93 (614)
T ss_dssp TCCCHHHHHHHHHHHHHTTHHHHTCCEEECCT-TSCCSCBCTTCCBCCCTTTSTTCHHHHHHHHHHTTCEE
T ss_pred ccCCHHHHHHHHHHHHHcCHHhhCCEEEEECC-CcCCCCcCCCCCEEECccccCCcHHHHHHHHHHCCCee
Confidence 3446666666665553 445788999999996 211 23334999999999999987
No 293
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY, enzyme-carbohydra interaction, mannose glycosidase inhibition; 1.90A {Bacteroides xylanisolvens} PDB: 4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Probab=21.42 E-value=74 Score=25.06 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCCEEEEecCCC-cc-hh-hHHHHHHHHHHHcCccc
Q 033650 72 LLGERLLLKDIPAVSVFLKRE-QR-YH-GKVKAIIDSLREAGVKL 113 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~-~~-yh-Grv~a~~~~lre~Gl~~ 113 (114)
.=.+.|+++||+.+.++ ..+ .. .. ..+..+++++.+.|++|
T Consensus 108 ~h~~~Ak~aGIDgf~l~-w~~~~~~~d~~~l~~~l~aA~~~~~k~ 151 (380)
T 4ad1_A 108 KHMDMFVMARTGVLALT-WWNEQDETEAKRIGLILDAADKKKIKV 151 (380)
T ss_dssp HHHHHHHHHTEEEEEEE-ECCCCSHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHcCCCEEEEE-ecCCCCcccHHHHHHHHHHHHHcCCeE
Confidence 33466788899999888 432 22 23 56778889999999876
No 294
>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}
Probab=21.39 E-value=90 Score=22.80 Aligned_cols=41 Identities=7% Similarity=-0.091 Sum_probs=29.0
Q ss_pred HHHHHhhCCCCEEEEecCCCc-chhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQ-RYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~-~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+++.+.|++.|-+...... .+.-.++.+.+.+.+.||++
T Consensus 34 ~l~~~a~~G~~~VEl~~~~~~~~~~~~~~~~~~~l~~~GL~v 75 (303)
T 3l23_A 34 NLRKVKDMGYSKLELAGYGKGAIGGVPMMDFKKMAEDAGLKI 75 (303)
T ss_dssp HHHHHHHTTCCEEEECCEETTEETTEEHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEEeccccCcccCCCCHHHHHHHHHHcCCeE
Confidence 456788899999876521111 23335899999999999975
No 295
>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}
Probab=21.29 E-value=1.6e+02 Score=21.24 Aligned_cols=41 Identities=10% Similarity=-0.043 Sum_probs=28.6
Q ss_pred HHHHHhhCCCCEEEEecCCCc-ch------hhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQ-RY------HGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~-~y------hGrv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.|.+...+.+ .. ...+..+.+.+++.||++
T Consensus 20 ~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i 67 (340)
T 2zds_A 20 VCRLARDFGYDGLELACWGDHFEVDKALADPSYVDSRHQLLDKYGLKC 67 (340)
T ss_dssp HHHHHHHHTCSEEEEESSTTTCCHHHHHHCTTHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEEeccccccCCccccccCHHHHHHHHHHHHHcCCeE
Confidence 456677889999987632111 11 135789999999999975
No 296
>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*
Probab=21.22 E-value=1.9e+02 Score=20.14 Aligned_cols=21 Identities=14% Similarity=0.115 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhCCCCEEEEe
Q 033650 68 KIGKLLGERLLLKDIPAVSVF 88 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d 88 (114)
-+|+.+|+++.+.|.+-+.++
T Consensus 18 gIG~aia~~l~~~G~~V~~~~ 38 (247)
T 2jah_A 18 GIGEATARALAAEGAAVAIAA 38 (247)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEE
Confidence 567777777777776544444
No 297
>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}
Probab=21.18 E-value=2e+02 Score=20.74 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEe
Q 033650 67 SKIGKLLGERLLLKDIPAVSVF 88 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d 88 (114)
.-+|..+|+++.+.|.+-+.+|
T Consensus 38 ~GIG~aia~~la~~G~~V~~~~ 59 (299)
T 3t7c_A 38 RGQGRSHAITLAREGADIIAID 59 (299)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE
T ss_pred CHHHHHHHHHHHHCCCEEEEEe
Confidence 4688889999888888777666
No 298
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=21.06 E-value=1.4e+02 Score=21.00 Aligned_cols=24 Identities=8% Similarity=0.180 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKR 91 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~ 91 (114)
.-+|+.+|+++.+.|.+=+.++ |.
T Consensus 17 ~GIG~aia~~l~~~G~~V~~~~-r~ 40 (252)
T 3h7a_A 17 DYIGAEIAKKFAAEGFTVFAGR-RN 40 (252)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SS
T ss_pred chHHHHHHHHHHHCCCEEEEEe-CC
Confidence 3588999999999998655555 54
No 299
>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*
Probab=20.96 E-value=1.7e+02 Score=22.85 Aligned_cols=41 Identities=7% Similarity=0.038 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCCEEEEecCCCcchhh---HHHHHHHHHHHcCccc
Q 033650 72 LLGERLLLKDIPAVSVFLKREQRYHG---KVKAIIDSLREAGVKL 113 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~yhG---rv~a~~~~lre~Gl~~ 113 (114)
.+.++|.+.|.++|-+| -+...|.. .-+.+++-+...|+.+
T Consensus 89 e~i~~ai~~GFtSVMiD-gS~~p~eENi~~Tk~vv~~ah~~gvsV 132 (323)
T 2isw_A 89 ESVKMAIDLGFSSVMID-ASHHPFDENVRITKEVVAYAHARSVSV 132 (323)
T ss_dssp HHHHHHHHTTCSEEEEC-CTTSCHHHHHHHHHHHHHHHHTTTCEE
T ss_pred HHHHHHHHcCCCeEEec-CCCCCHHHHHHHHHHHHHHHHHcCCeE
Confidence 46789999999999888 46666654 4566777777777653
No 300
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=20.94 E-value=1.2e+02 Score=20.70 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKRE 92 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~ 92 (114)
--+|..+++++.+.|.+-+.++ |..
T Consensus 31 G~iG~~l~~~L~~~G~~V~~~~-R~~ 55 (236)
T 3e8x_A 31 GKVARYLLSELKNKGHEPVAMV-RNE 55 (236)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SSG
T ss_pred ChHHHHHHHHHHhCCCeEEEEE-CCh
Confidence 4699999999999997655556 554
No 301
>3ors_A N5-carboxyaminoimidazole ribonucleotide mutase; isomerase, isomerase,biosynthetic protein; 1.45A {Staphylococcus aureus subsp}
Probab=20.91 E-value=1.5e+02 Score=20.91 Aligned_cols=42 Identities=17% Similarity=0.148 Sum_probs=30.1
Q ss_pred HHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCcccC
Q 033650 72 LLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 72 ~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~~ 114 (114)
..++-+.+.||..- +..-+.|+--.++..+++.+++.|++++
T Consensus 21 ~a~~~l~~~gi~~e-v~V~SaHR~p~~~~~~~~~a~~~g~~Vi 62 (163)
T 3ors_A 21 ESCNMLDYFEIPYE-KQVVSAHRTPKMMVQFASEARERGINII 62 (163)
T ss_dssp HHHHHHHHTTCCEE-EEECCTTTSHHHHHHHHHHTTTTTCCEE
T ss_pred HHHHHHHHcCCCEE-EEEECCcCCHHHHHHHHHHHHhCCCcEE
Confidence 34455577899832 2223788888999999999999887753
No 302
>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0
Probab=20.90 E-value=95 Score=21.93 Aligned_cols=37 Identities=8% Similarity=-0.011 Sum_probs=27.2
Q ss_pred HHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 73 LGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 73 la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
..+.+.+.|++.|.+.. .+ ...++.+.+.+.+.||++
T Consensus 28 ~l~~~~~~G~~~vEl~~--~~--~~~~~~~~~~l~~~gl~~ 64 (269)
T 3ngf_A 28 RFRLAAEAGFGGVEFLF--PY--DFDADVIARELKQHNLTQ 64 (269)
T ss_dssp HHHHHHHTTCSEEECSC--CT--TSCHHHHHHHHHHTTCEE
T ss_pred HHHHHHHcCCCEEEecC--Cc--cCCHHHHHHHHHHcCCcE
Confidence 45667888999987652 22 234889999999999875
No 303
>2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum}
Probab=20.88 E-value=1.9e+02 Score=19.74 Aligned_cols=25 Identities=16% Similarity=-0.061 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKR 91 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~ 91 (114)
--+|..+++++.+.|.+-+.+++|.
T Consensus 15 ggiG~~~a~~l~~~G~~V~~~~~r~ 39 (247)
T 2hq1_A 15 RGLGKAIAWKLGNMGANIVLNGSPA 39 (247)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred chHHHHHHHHHHHCCCEEEEEcCcC
Confidence 4688999999999997655554343
No 304
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=20.80 E-value=58 Score=24.36 Aligned_cols=39 Identities=8% Similarity=-0.027 Sum_probs=25.6
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcCccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
+.+++.|.++|++-+++-| -.. .-+..+.+.+++.|+++
T Consensus 109 ~~f~~~~~~aG~dGviv~D-l~~---ee~~~~~~~~~~~gl~~ 147 (271)
T 1ujp_A 109 ERFFGLFKQAGATGVILPD-LPP---DEDPGLVRLAQEIGLET 147 (271)
T ss_dssp HHHHHHHHHHTCCEEECTT-CCG---GGCHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHcCCCEEEecC-CCH---HHHHHHHHHHHHcCCce
Confidence 5677778888888664332 222 44677778888888753
No 305
>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*
Probab=20.78 E-value=1.8e+02 Score=20.97 Aligned_cols=22 Identities=14% Similarity=0.200 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhCCCCEEEEe
Q 033650 67 SKIGKLLGERLLLKDIPAVSVF 88 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d 88 (114)
.-+|+.+|+++.+.|.+-+..+
T Consensus 57 ~GIG~aia~~la~~G~~V~~~~ 78 (291)
T 3ijr_A 57 SGIGRAVSIAFAKEGANIAIAY 78 (291)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE
T ss_pred cHHHHHHHHHHHHCCCEEEEEe
Confidence 4588888888888887655555
No 306
>3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile}
Probab=20.76 E-value=1.3e+02 Score=21.58 Aligned_cols=43 Identities=21% Similarity=0.301 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcc---hhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQR---YHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~---yhGrv~a~~~~lre~G 110 (114)
.-+|+.+|+++.+.|.+-+.++ |.... ..+.++..++.+.+.|
T Consensus 19 ~GIG~aia~~l~~~G~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~~ 64 (285)
T 3sc4_A 19 RGIGLAIAKRVAADGANVALVA-KSAEPHPKLPGTIYTAAKEIEEAG 64 (285)
T ss_dssp SHHHHHHHHHHHTTTCEEEEEE-SCCSCCSSSCCCHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCCEEEEEE-CChhhhhhhhHHHHHHHHHHHhcC
Confidence 3689999999999998655555 54332 1223444444444443
No 307
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=20.69 E-value=1.6e+02 Score=20.93 Aligned_cols=42 Identities=12% Similarity=0.172 Sum_probs=26.3
Q ss_pred HHHHHHhhC--CCCEEEEec-CCCcchhhHHHHHHHHHHHcCccc
Q 033650 72 LLGERLLLK--DIPAVSVFL-KREQRYHGKVKAIIDSLREAGVKL 113 (114)
Q Consensus 72 ~la~ra~e~--gI~~v~~d~-r~~~~yhGrv~a~~~~lre~Gl~~ 113 (114)
...+-+++. |..++.+-- ........|.+.+.+++.+.|+++
T Consensus 121 ~~~~~l~~~~pg~~~I~~i~~~~~~~~~~r~~g~~~al~~~gi~~ 165 (295)
T 3lft_A 121 QQVELIKALTPNVKTIGALYSSSEDNSKTQVEEFKAYAEKAGLTV 165 (295)
T ss_dssp HHHHHHHHHCTTCCEEEEEEETTCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhCCCCcEEEEEeCCCCcchHHHHHHHHHHHHHcCCEE
Confidence 334444555 888864421 122123468899999999999875
No 308
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=20.68 E-value=1.6e+02 Score=23.08 Aligned_cols=41 Identities=17% Similarity=0.035 Sum_probs=27.2
Q ss_pred HHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHc--Cccc
Q 033650 71 KLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREA--GVKL 113 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~--Gl~~ 113 (114)
..+++++.++|++-+.+|.-.++ .-.+...++.+++. |+.+
T Consensus 102 ~e~~~~a~~aGvdvI~id~a~G~--~~~~~e~I~~ir~~~~~~~V 144 (361)
T 3r2g_A 102 LQRAEALRDAGADFFCVDVAHAH--AKYVGKTLKSLRQLLGSRCI 144 (361)
T ss_dssp HHHHHHHHHTTCCEEEEECSCCS--SHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC--cHhHHHHHHHHHHhcCCCeE
Confidence 45789999999999888842232 22355566777775 5543
No 309
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0
Probab=20.57 E-value=21 Score=26.29 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHhhCCCC
Q 033650 61 RDVAAASKIGKLLGERLLLKDIP 83 (114)
Q Consensus 61 ~n~~AA~~vG~~la~ra~e~gI~ 83 (114)
....++|.+|..+++..++.|++
T Consensus 21 ~~~~~sY~~G~~~g~~l~~~~~~ 43 (219)
T 3oe2_A 21 DAHDLAYSLGASLGERLHQEVPD 43 (219)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHhcCcC
Confidence 34568999999999999887765
No 310
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A*
Probab=20.43 E-value=92 Score=22.84 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=30.5
Q ss_pred HHHHHHHhhCCCCEEEEec--------CCCcch----hhHHHHHHHHHHHcCcccC
Q 033650 71 KLLGERLLLKDIPAVSVFL--------KREQRY----HGKVKAIIDSLREAGVKLL 114 (114)
Q Consensus 71 ~~la~ra~e~gI~~v~~d~--------r~~~~y----hGrv~a~~~~lre~Gl~~~ 114 (114)
+.-.+.+++.|++.|-+.. ...+.+ =.++..+++.+.+.||.+|
T Consensus 44 ~~d~~~l~~~G~n~vRi~i~w~~~~~~~~~~~~~~~~~~~~d~~v~~a~~~Gi~vi 99 (320)
T 3nco_A 44 DEYFKIIKERGFDSVRIPIRWSAHISEKYPYEIDKFFLDRVKHVVDVALKNDLVVI 99 (320)
T ss_dssp HHHHHHHHHHTCCEEEECCCGGGSBCSSTTCCBCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHCCCCEEEEeeehHHhcCCCCCCccCHHHHHHHHHHHHHHHHCCCEEE
Confidence 4556677888999987631 122222 3578899999999999864
No 311
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=20.43 E-value=2.2e+02 Score=19.73 Aligned_cols=44 Identities=11% Similarity=0.111 Sum_probs=27.8
Q ss_pred eeeEEEECCCCeEEEEecchhHhhhhccCCCCCHHHHHHHHHHHHHHHhh
Q 033650 30 VSAQVVHSPTATVASSASSQEKALRSTIGCTRDVAAASKIGKLLGERLLL 79 (114)
Q Consensus 30 i~Aqvi~~~~~~~l~saST~e~~~k~~l~~~~n~~AA~~vG~~la~ra~e 79 (114)
+|+.|....++.+|+.....+.. ++.+......+.+.+.++...
T Consensus 4 ~ya~IaR~~d~~iLa~~~d~~~~------~~~~~~~~~~~a~~il~ki~~ 47 (196)
T 2nut_C 4 LLTMIARVADGLPLAASMQEDEQ------SGRDLQQYQSQAKQLFRKLNE 47 (196)
T ss_dssp CCEEEEETTTCCEEEEECCCC-----------CHHHHHHHHHHHHHHCCT
T ss_pred EEEEEEEcCCCcEEEEeeccccc------ccccHHHHHHHHHHHHHhcCC
Confidence 57888887778888765543211 112455677888888888764
No 312
>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}
Probab=20.26 E-value=2e+02 Score=20.16 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhhCCCCEEEEecCCCcchhhHHHHHHHHHHHcC
Q 033650 67 SKIGKLLGERLLLKDIPAVSVFLKREQRYHGKVKAIIDSLREAG 110 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d~r~~~~yhGrv~a~~~~lre~G 110 (114)
.-+|..+|+++.+.|.+-+.++ |.. .+...+.+.+.+.|
T Consensus 39 ~gIG~~la~~l~~~G~~V~~~~-r~~----~~~~~~~~~~~~~~ 77 (262)
T 3rkr_A 39 RGIGAAIARKLGSLGARVVLTA-RDV----EKLRAVEREIVAAG 77 (262)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE-SCH----HHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHHCCCEEEEEE-CCH----HHHHHHHHHHHHhC
Confidence 4588888888888887655445 432 33444444444433
No 313
>2dcl_A Hypothetical UPF0166 protein PH1503; hexamer, structural genomics, NPPSFA, national project on PR structural and functional analyses; HET: AMP; 2.28A {Pyrococcus horikoshii}
Probab=20.24 E-value=70 Score=21.52 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhCCCCEEEEecCC
Q 033650 69 IGKLLGERLLLKDIPAVSVFLKR 91 (114)
Q Consensus 69 vG~~la~ra~e~gI~~v~~d~r~ 91 (114)
+-+.|.++|.+.||..+++. ||
T Consensus 27 L~~~Iv~~a~~~GiaGaTV~-rg 48 (127)
T 2dcl_A 27 LYKVIVEKLREMGIAGATVY-RG 48 (127)
T ss_dssp HHHHHHHHHHHTTCSCEEEE-EC
T ss_pred HHHHHHHHHHHCCCCeEEEE-cC
Confidence 45678899999999988888 56
No 314
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=20.16 E-value=2.1e+02 Score=19.76 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhhCCCCEEEEe
Q 033650 67 SKIGKLLGERLLLKDIPAVSVF 88 (114)
Q Consensus 67 ~~vG~~la~ra~e~gI~~v~~d 88 (114)
.-+|..+|+++.+.|.+-+.+|
T Consensus 19 ~giG~~~a~~l~~~G~~V~~~~ 40 (253)
T 3qiv_A 19 GGIGQAYAEALAREGAAVVVAD 40 (253)
T ss_dssp SHHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHHHHHHHHHCCCEEEEEc
Confidence 4588889999888887755555
No 315
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A
Probab=20.04 E-value=1.5e+02 Score=22.50 Aligned_cols=42 Identities=19% Similarity=0.247 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhCCCCEEEEecCCCcc------hhhHHHHHHHHHHHcCc
Q 033650 68 KIGKLLGERLLLKDIPAVSVFLKREQR------YHGKVKAIIDSLREAGV 111 (114)
Q Consensus 68 ~vG~~la~ra~e~gI~~v~~d~r~~~~------yhGrv~a~~~~lre~Gl 111 (114)
.+|..+|++++..|.+-+.+| |.... +++ ...+.+.+.++-+
T Consensus 149 ~IG~~vA~~l~~~G~~V~~~d-r~~~~~~~~~~~~~-~~~l~ell~~aDi 196 (315)
T 3pp8_A 149 VLGAKVAESLQAWGFPLRCWS-RSRKSWPGVESYVG-REELRAFLNQTRV 196 (315)
T ss_dssp HHHHHHHHHHHTTTCCEEEEE-SSCCCCTTCEEEES-HHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHCCCEEEEEc-CCchhhhhhhhhcc-cCCHHHHHhhCCE
Confidence 479999999999999888777 44432 333 2455566655543
No 316
>1tqz_A Necap1; endocytosis, structural genomics, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: b.55.1.11
Probab=20.04 E-value=86 Score=21.61 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=24.7
Q ss_pred CcEEEEEEeCCceeeEEEECCCCeEEEEec
Q 033650 18 PYVLKMHLTNKYVSAQVVHSPTATVASSAS 47 (114)
Q Consensus 18 ~~rL~V~~Snkhi~Aqvi~~~~~~~l~saS 47 (114)
.=||+|...++..+..+.|..+|...|.|-
T Consensus 44 tGrlrv~~~g~~~~I~LeD~~tGeLFA~cP 73 (133)
T 1tqz_A 44 TGRLRITSKGKIAYIKLEDKVSGELFAQAP 73 (133)
T ss_dssp EEEEEEECCSSSEEEEEECSSCCSSCEEEE
T ss_pred EEEEEEEEeCCEEEEEEEeCCCCcEEEeCc
Confidence 457899999999999999999998765553
Done!