AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>033651
MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV
GLIKELNNNITRVVNLYADLSNSFTRSMEASSEGESAATLKSEGKASQKRIRSG
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with ELF4-L4 ELF4-L4 ELF4-L4 AT1G17455	protein from Arabidopsis thaliana	1.5e-35
BLAST match view associations BLAST with ELF4-L2 ELF4-L2 ELF4-L2 AT1G72630	protein from Arabidopsis thaliana	2.0e-33
BLAST match view associations BLAST with ELF4-L3 ELF4-L3 ELF4-L3 AT2G06255	protein from Arabidopsis thaliana	5.6e-29
BLAST match view associations BLAST with ELF4 ELF4 ELF4 AT2G40080	protein from Arabidopsis thaliana	9.8e-16
BLAST match view associations BLAST with ELF4-L1 ELF4-L1 ELF4-L1 AT2G29950	protein from Arabidopsis thaliana	1.4e-14
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033651
        (114 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006126 - symbol:ELF4-L4 "AT1G17455" species...   384  1.5e-35   1
TAIR|locus:2030165 - symbol:ELF4-L2 "AT1G72630" species:3...   364  2.0e-33   1
TAIR|locus:505006240 - symbol:ELF4-L3 "AT2G06255" species...   322  5.6e-29   1
TAIR|locus:2061226 - symbol:ELF4 "AT2G40080" species:3702...   197  9.8e-16   1
TAIR|locus:2045673 - symbol:ELF4-L1 "AT2G29950" species:3...   186  1.4e-14   1


>TAIR|locus:505006126 [details] [associations]
            symbol:ELF4-L4 "AT1G17455" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0009648 "photoperiodism" evidence=IEP]
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0042803
            GO:GO:0048511 EMBL:AC022492 GO:GO:0009648 EMBL:AC007843
            HOGENOM:HOG000240133 ProtClustDB:CLSN2683840 InterPro:IPR009741
            Pfam:PF07011 EMBL:AK220611 EMBL:BT025588 EMBL:AY085165
            IPI:IPI00544242 RefSeq:NP_001154348.1 RefSeq:NP_564024.1
            UniGene:At.41834 PRIDE:Q570U6 EnsemblPlants:AT1G17455.1
            EnsemblPlants:AT1G17455.2 GeneID:838318 KEGG:ath:AT1G17455
            TAIR:At1g17455 eggNOG:NOG273243 InParanoid:Q570U6 OMA:HESKQPD
            PhylomeDB:Q570U6 Genevestigator:Q570U6 Uniprot:Q570U6
        Length = 114

 Score = 384 (140.2 bits), Expect = 1.5e-35, P = 1.5e-35
 Identities = 78/114 (68%), Positives = 87/114 (76%)

Query:     1 MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
             MEGD+ S  G+   +D K+LQ FQKSF  VQDILDQNRLLINEINQNHESK PDNL RNV
Sbjct:     1 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60

Query:    61 GLIKELNNNITRVVNLYADLSNSFTRSMXXXXXXXXXXTLKSEGKASQKRIRSG 114
             GLIKELNNNI RV +LY DLS+SF RS+          TLKS+GKA+QKR RSG
Sbjct:    61 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114


>TAIR|locus:2030165 [details] [associations]
            symbol:ELF4-L2 "AT1G72630" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009648 "photoperiodism"
            evidence=IEP] EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
            GO:GO:0042803 GO:GO:0048511 EMBL:AC010926 GO:GO:0009648
            HOGENOM:HOG000240133 ProtClustDB:CLSN2683840 InterPro:IPR009741
            Pfam:PF07011 EMBL:AY039916 EMBL:AY079311 EMBL:AY085916
            IPI:IPI00539364 PIR:H96750 RefSeq:NP_565044.1 UniGene:At.19324
            IntAct:Q94BS8 STRING:Q94BS8 PRIDE:Q94BS8 EnsemblPlants:AT1G72630.1
            GeneID:843595 KEGG:ath:AT1G72630 TAIR:At1g72630 eggNOG:NOG300198
            InParanoid:Q94BS8 OMA:HESKQAD PhylomeDB:Q94BS8
            Genevestigator:Q94BS8 Uniprot:Q94BS8
        Length = 119

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 76/115 (66%), Positives = 87/115 (75%)

Query:     1 MEGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
             MEGD++S  G   Q+D K+LQ FQKSF QVQDILDQNRLLINEINQNHESK  D+L RNV
Sbjct:     5 MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64

Query:    61 GLIKELNNNITRVVNLYADLSNSFTRSMXXXXXXXXXXTLKSEGKAS-QKRIRSG 114
             GLI+ELNNNI  V +LY DLS+SF RS+          TLKS+GKA+ QKR RSG
Sbjct:    65 GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119


>TAIR|locus:505006240 [details] [associations]
            symbol:ELF4-L3 "AT2G06255" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] GO:GO:0005634 GO:GO:0042803 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0048511 HOGENOM:HOG000240133
            ProtClustDB:CLSN2683840 InterPro:IPR009741 Pfam:PF07011
            EMBL:AC006918 EMBL:AY086681 IPI:IPI00520010 RefSeq:NP_565334.1
            UniGene:At.41090 EnsemblPlants:AT2G06255.1 GeneID:815182
            KEGG:ath:AT2G06255 TAIR:At2g06255 eggNOG:NOG281919
            InParanoid:Q8S8F5 OMA:LISEINH PhylomeDB:Q8S8F5
            Genevestigator:Q8S8F5 Uniprot:Q8S8F5
        Length = 109

 Score = 322 (118.4 bits), Expect = 5.6e-29, P = 5.6e-29
 Identities = 69/113 (61%), Positives = 83/113 (73%)

Query:     1 MEGDIFSSA-GNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRN 59
             MEGD  S   G+  Q+D KILQ F+KSF QVQ+ILD NRLLINEINQNHESK+PDNL RN
Sbjct:     1 MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60

Query:    60 VGLIKELNNNITRVVNLYADLSNSFTRSMXXXXXXXXXXTLKSEGKASQKRIR 112
             VGLI+ELNNN+ RV +LY DLSN+F++SM             SEG+ + +RIR
Sbjct:    61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDS-----SEGRGN-RRIR 107


>TAIR|locus:2061226 [details] [associations]
            symbol:ELF4 "AT2G40080" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0009648 "photoperiodism"
            evidence=IEP;IMP] [GO:0009909 "regulation of flower development"
            evidence=IMP] [GO:0042753 "positive regulation of circadian rhythm"
            evidence=IMP] [GO:0010114 "response to red light" evidence=IMP]
            [GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
            [GO:0009649 "entrainment of circadian clock" evidence=IMP]
            [GO:0048573 "photoperiodism, flowering" evidence=IMP] [GO:0080167
            "response to karrikin" evidence=IEP] [GO:0042803 "protein
            homodimerization activity" evidence=IDA] GO:GO:0005634
            GO:GO:0042803 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009649
            GO:GO:0048511 GO:GO:0080167 GO:GO:0010114 GO:GO:0009585
            GO:GO:0009908 GO:GO:0048573 GO:GO:0009909 GO:GO:0010017
            EMBL:AF002109 GO:GO:0042753 HOGENOM:HOG000240133
            ProtClustDB:CLSN2683840 InterPro:IPR009741 Pfam:PF07011
            EMBL:AY035183 EMBL:AY062963 EMBL:AY088748 IPI:IPI00528125
            PIR:A84825 RefSeq:NP_565922.1 UniGene:At.14672 UniGene:At.67850
            STRING:O04211 PRIDE:O04211 EnsemblPlants:AT2G40080.1 GeneID:818596
            KEGG:ath:AT2G40080 TAIR:At2g40080 eggNOG:NOG295440
            InParanoid:O04211 OMA:DPAMWEN PhylomeDB:O04211
            Genevestigator:O04211 Uniprot:O04211
        Length = 111

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 34/70 (48%), Positives = 55/70 (78%)

Query:    16 DDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVN 75
             D  + +   ++F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI++VVN
Sbjct:    22 DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81

Query:    76 LYADLSNSFT 85
             +Y+DL+ SF+
Sbjct:    82 MYSDLNTSFS 91


>TAIR|locus:2045673 [details] [associations]
            symbol:ELF4-L1 "AT2G29950" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0042753 "positive regulation of circadian rhythm"
            evidence=IMP] GO:GO:0005634 GO:GO:0042803 EMBL:CP002685
            GenomeReviews:CT485783_GR GO:GO:0048511 EMBL:AC004680 GO:GO:0042753
            EMBL:AY954806 EMBL:AY648325 IPI:IPI00542331 PIR:T02490
            RefSeq:NP_180556.1 UniGene:At.27228 UniGene:At.50818
            UniGene:At.68809 EnsemblPlants:AT2G29950.1 GeneID:817545
            KEGG:ath:AT2G29950 TAIR:At2g29950 eggNOG:NOG286501
            HOGENOM:HOG000240133 InParanoid:O80877 OMA:PEMNEND PhylomeDB:O80877
            ProtClustDB:CLSN2683840 Genevestigator:O80877 InterPro:IPR009741
            Pfam:PF07011 Uniprot:O80877
        Length = 125

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 37/85 (43%), Positives = 55/85 (64%)

Query:     2 EGDIFSSAGNDAQVDDKILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVG 61
             E D    A + A  D ++       F + Q  LDQNR LI  +N+NH S++PDN++RNVG
Sbjct:    20 ENDGEDVAASAAVEDVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVG 79

Query:    62 LIKELNNNITRVVNLYADLSNSFTR 86
             LI E+N NI++V+ +Y+DLS +F +
Sbjct:    80 LINEINGNISQVMEIYSDLSLNFAK 104


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.131   0.345    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      114       104   0.00091  102 3  11 23  0.46    30
                                                     29  0.50    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  439 (47 KB)
  Total size of DFA:  84 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.09u 0.12s 13.21t   Elapsed:  00:00:01
  Total cpu time:  13.09u 0.12s 13.21t   Elapsed:  00:00:01
  Start:  Thu May  9 22:22:18 2013   End:  Thu May  9 22:22:19 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
