Query 033652
Match_columns 114
No_of_seqs 107 out of 1026
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 07:24:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033652.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033652hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zjr_T 50S ribosomal protein L 100.0 1.7E-50 5.7E-55 284.2 8.2 87 5-92 1-87 (91)
2 3v2d_0 50S ribosomal protein L 100.0 6.4E-50 2.2E-54 278.3 8.7 84 5-89 1-84 (85)
3 3bbo_X Ribosomal protein L27; 100.0 2.9E-49 9.8E-54 307.8 -3.2 99 1-100 54-152 (198)
4 3r8s_W 50S ribosomal protein L 100.0 8E-45 2.7E-49 248.3 8.7 76 14-89 1-76 (76)
5 2ftc_O L27MT, MRP-L27, mitocho 100.0 1.8E-44 6E-49 242.9 6.8 68 6-73 1-69 (69)
6 2xha_A NUSG, transcription ant 95.8 0.0052 1.8E-07 47.5 2.9 52 29-100 85-139 (193)
7 2xhc_A Transcription antitermi 95.5 0.01 3.4E-07 48.8 3.8 50 29-98 125-177 (352)
8 3m7n_A Putative uncharacterize 94.1 0.098 3.3E-06 38.5 5.6 55 33-96 2-56 (179)
9 2je6_I RRP4, exosome complex R 92.8 0.2 6.8E-06 39.1 5.7 53 30-92 14-68 (251)
10 2nn6_I 3'-5' exoribonuclease C 89.4 0.075 2.6E-06 40.3 0.2 58 29-90 16-73 (209)
11 2ba0_A Archeal exosome RNA bin 87.6 0.44 1.5E-05 36.5 3.5 48 33-90 3-50 (229)
12 2d5d_A Methylmalonyl-COA decar 82.4 0.68 2.3E-05 27.8 1.9 37 27-73 19-55 (74)
13 1dcz_A Transcarboxylase 1.3S s 81.6 0.75 2.6E-05 28.1 1.9 37 27-73 22-58 (77)
14 2nn6_H Exosome complex exonucl 81.1 1.8 6E-05 34.9 4.4 52 30-90 37-88 (308)
15 2auk_A DNA-directed RNA polyme 78.7 1.4 4.7E-05 33.0 2.9 36 28-75 65-100 (190)
16 1qjo_A Dihydrolipoamide acetyl 77.9 1.7 5.7E-05 26.8 2.7 42 22-73 15-56 (80)
17 1z6h_A Biotin/lipoyl attachmen 77.1 1 3.4E-05 27.1 1.4 36 27-72 13-48 (72)
18 2z0s_A Probable exosome comple 76.5 0.67 2.3E-05 35.4 0.6 51 32-90 9-59 (235)
19 1iyu_A E2P, dihydrolipoamide a 75.1 1 3.5E-05 27.9 1.2 39 25-73 16-54 (79)
20 1ghj_A E2, E2, the dihydrolipo 73.8 1.7 5.9E-05 26.9 1.9 39 25-73 19-57 (79)
21 2ejm_A Methylcrotonoyl-COA car 73.5 1.8 6.3E-05 28.3 2.1 37 27-73 28-64 (99)
22 1bdo_A Acetyl-COA carboxylase; 72.0 1.7 5.8E-05 26.9 1.6 36 28-73 26-61 (80)
23 2l5t_A Lipoamide acyltransfera 67.6 1 3.6E-05 27.7 -0.1 38 26-73 20-57 (77)
24 2dn8_A Acetyl-COA carboxylase 64.9 3.4 0.00012 27.0 2.0 36 27-72 31-66 (100)
25 2lmc_B DNA-directed RNA polyme 59.2 7.1 0.00024 26.1 2.8 32 59-91 22-53 (84)
26 2k7v_A Dihydrolipoyllysine-res 59.2 0.91 3.1E-05 28.8 -1.6 36 27-72 16-51 (85)
27 3crk_C Dihydrolipoyllysine-res 58.8 5.1 0.00017 25.4 1.9 40 23-72 21-60 (87)
28 2kcc_A Acetyl-COA carboxylase 57.6 7.5 0.00026 24.5 2.6 39 25-73 17-55 (84)
29 2jku_A Propionyl-COA carboxyla 57.3 2.5 8.5E-05 27.5 0.3 37 26-72 38-74 (94)
30 2nn6_G Exosome complex exonucl 56.4 17 0.00057 29.0 5.0 58 32-90 39-120 (289)
31 1gjx_A Pyruvate dehydrogenase; 51.5 1.8 6.1E-05 26.8 -1.2 37 26-72 20-56 (81)
32 2dnc_A Pyruvate dehydrogenase 47.7 8.6 0.00029 25.3 1.7 38 25-72 25-62 (98)
33 3lu0_D DNA-directed RNA polyme 45.7 12 0.0004 36.3 2.9 61 28-91 1108-1182(1407)
34 1pmr_A Dihydrolipoyl succinylt 45.3 3 0.0001 26.0 -0.9 38 25-72 20-57 (80)
35 1k8m_A E2 component of branche 40.9 8.6 0.0003 24.9 0.9 41 22-72 19-59 (93)
36 2dne_A Dihydrolipoyllysine-res 40.4 12 0.00041 25.1 1.5 38 25-72 25-62 (108)
37 3lu0_D DNA-directed RNA polyme 33.9 28 0.00097 33.8 3.4 36 28-75 1004-1039(1407)
38 3tuf_B Stage II sporulation pr 33.0 66 0.0023 24.8 4.9 42 45-86 76-119 (245)
39 1y8o_B Dihydrolipoyllysine-res 32.3 22 0.00076 24.9 1.9 36 27-72 47-82 (128)
40 4hu2_A Probable conserved lipo 31.1 35 0.0012 25.9 3.0 58 43-100 54-121 (198)
41 2k32_A A; NMR {Campylobacter j 29.4 23 0.00077 23.0 1.5 19 27-45 15-33 (116)
42 3nyy_A Putative glycyl-glycine 29.1 56 0.0019 25.2 3.9 41 47-87 122-166 (252)
43 2auk_A DNA-directed RNA polyme 28.0 23 0.00079 26.2 1.5 17 27-43 168-184 (190)
44 2qj8_A MLR6093 protein; struct 25.0 72 0.0025 24.6 3.9 40 31-76 274-313 (332)
45 1o5u_A Novel thermotoga mariti 21.6 1.3E+02 0.0045 19.4 4.1 35 34-68 54-93 (101)
46 3myx_A Uncharacterized protein 20.5 1.5E+02 0.0052 22.7 4.9 40 34-73 70-111 (238)
No 1
>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...
Probab=100.00 E-value=1.7e-50 Score=284.17 Aligned_cols=87 Identities=56% Similarity=0.940 Sum_probs=81.9
Q ss_pred eeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEE
Q 033652 5 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 84 (114)
Q Consensus 5 ~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V 84 (114)
|||||++|||+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++.. ++|+||
T Consensus 1 mAhKK~~GSt~NGRdS~~krLGvK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~-~~r~~V 79 (91)
T 2zjr_T 1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFI 79 (91)
T ss_dssp -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEET-TTEEEE
T ss_pred CCcccCCCCCCCCCCCCCceeeEEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcC-CCcEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999775 799999
Q ss_pred EeEeCCCC
Q 033652 85 HVEPKEGH 92 (114)
Q Consensus 85 ~V~p~~~~ 92 (114)
+|+|++.+
T Consensus 80 ~V~p~~~~ 87 (91)
T 2zjr_T 80 SIEAAQTE 87 (91)
T ss_dssp EECCCC--
T ss_pred EEEeChhh
Confidence 99997654
No 2
>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...
Probab=100.00 E-value=6.4e-50 Score=278.32 Aligned_cols=84 Identities=56% Similarity=0.915 Sum_probs=73.9
Q ss_pred eeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEE
Q 033652 5 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 84 (114)
Q Consensus 5 ~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V 84 (114)
|||||++|||+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++.. ++|+||
T Consensus 1 MAhKK~gGStkNGrdS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~-~~r~~V 79 (85)
T 3v2d_0 1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYV 79 (85)
T ss_dssp --------CCSCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEECG-GGCEEE
T ss_pred CCcccCCCCCCCCCCCCCccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEcC-CCCEEE
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999874 689999
Q ss_pred EeEeC
Q 033652 85 HVEPK 89 (114)
Q Consensus 85 ~V~p~ 89 (114)
+|+|+
T Consensus 80 sV~p~ 84 (85)
T 3v2d_0 80 HVRPL 84 (85)
T ss_dssp EEEEC
T ss_pred EEEEC
Confidence 99996
No 3
>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=2.9e-49 Score=307.83 Aligned_cols=99 Identities=52% Similarity=0.741 Sum_probs=83.7
Q ss_pred CceEeeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCC
Q 033652 1 MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSG 80 (114)
Q Consensus 1 ~~~r~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~ 80 (114)
+.+||||||+||||+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++.. ++
T Consensus 54 l~VRmAhKKggGSTkNGRDS~~KRLGVK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl~~G~VkF~~~~-~~ 132 (198)
T 3bbo_X 54 LTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFG-PD 132 (198)
T ss_dssp -----CCCCSSCCCCCCCCCCCCCCSCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSSSC-CC
T ss_pred hheeeeeccCCCCCCCCCCCCCceeeEEecCCeEeccCcEEEeccCceEcCCCCeeecCCCceEeccceEEEEEEcC-CC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999653 78
Q ss_pred ceEEEeEeCCCCcccccccc
Q 033652 81 RKWVHVEPKEGHVLHPLYAN 100 (114)
Q Consensus 81 rk~V~V~p~~~~~~~p~~~~ 100 (114)
|+||+|+|++.+.+||.+.+
T Consensus 133 Rk~VsV~p~~~~~~~p~~~r 152 (198)
T 3bbo_X 133 RKKISVYPREIVPENPNSYR 152 (198)
T ss_dssp CSCCCSSCCCCC--------
T ss_pred cEEEEEEeCCccccCchhhh
Confidence 99999999999999998544
No 4
>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...
Probab=100.00 E-value=8e-45 Score=248.35 Aligned_cols=76 Identities=58% Similarity=1.015 Sum_probs=73.3
Q ss_pred CCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeC
Q 033652 14 TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK 89 (114)
Q Consensus 14 tkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~ 89 (114)
|+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++...++|+||+|+|+
T Consensus 1 t~NGRDS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p~ 76 (76)
T 3r8s_W 1 TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE 76 (76)
T ss_dssp CCCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEECC
T ss_pred CCCCCCCCcccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEeC
Confidence 7999999999999999999999999999999999999999999999999999999999999876679999999984
No 5
>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O
Probab=100.00 E-value=1.8e-44 Score=242.94 Aligned_cols=68 Identities=51% Similarity=0.841 Sum_probs=67.4
Q ss_pred eeecCCccCCC-CCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 6 ATKKTAGSTKN-GRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 6 A~KK~~GStkN-grdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
||||++|||+| ||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|
T Consensus 1 A~KK~~GSt~N~grdS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~f 69 (69)
T 2ftc_O 1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY 69 (69)
T ss_pred CcccccCcccCCCCCCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence 89999999999 999999999999999999999999999999999999999999999999999999997
No 6
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=95.78 E-value=0.0052 Score=47.48 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=37.3
Q ss_pred eeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCCCc---ccccccc
Q 033652 29 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHV---LHPLYAN 100 (114)
Q Consensus 29 ~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~---~~p~~~~ 100 (114)
.-+|+.|.+|+||+ ||+.++|-++|+|.|.+ .++.|.|.|..++. +-|.+..
T Consensus 85 V~dG~~V~~GdvLA----------------Kd~AIiaEIdG~V~fgk----gkrrivI~~~~Ge~~eylIPk~k~ 139 (193)
T 2xha_A 85 LRVGTKVKQGLPLS----------------KNEEYICELDGKIVEIE----RMKKVVVQTPDGEQDVYYIPLDVF 139 (193)
T ss_dssp CCTTCEECTTSBSS----------------TTSCSBCCSSEEEEEEE----EEEEEEEECTTSCEEEEEEEGGGC
T ss_pred cCCCCEEcCCCEEe----------------cCCeEEEccceEEEECC----CeEEEEEECCCCCEEEEEeCCCCc
Confidence 34566666666666 99999999999999987 45567788866543 4454443
No 7
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=95.50 E-value=0.01 Score=48.84 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=38.0
Q ss_pred eeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCCCc---ccccc
Q 033652 29 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHV---LHPLY 98 (114)
Q Consensus 29 ~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~---~~p~~ 98 (114)
.-+|+.|.+|+||+ ||+.++|-+||+|.|.++ ++.|.|.|..++. +-|.+
T Consensus 125 v~~g~~v~~G~vla----------------k~~aiiaeidG~V~fg~~----kr~i~i~~~~g~~~eylip~~ 177 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS----------------KNEEYICELDGKIVEIER----MKKVVVQTPDGEQDVYYIPLD 177 (352)
T ss_dssp CCTTCEECTTCBSB----------------SSSSCBCCSCEEEEEEEE----EEEEEEECTTSCEEEEEEEGG
T ss_pred cCCCCEEccCcEEe----------------cCceEEeccceEEEECCc----EEEEEEECCCCCEEEEEEcCC
Confidence 44677777777777 999999999999999985 5567778876643 55555
No 8
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=94.10 E-value=0.098 Score=38.52 Aligned_cols=55 Identities=20% Similarity=0.209 Sum_probs=41.6
Q ss_pred eEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCCCcccc
Q 033652 33 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHP 96 (114)
Q Consensus 33 q~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~~~p 96 (114)
+.|.||+.|.-. ..|.||.++..- |..|+|..-|.|.+. .+.|+|.|.......|
T Consensus 2 ~iV~PGd~l~~~--~~~~~G~Gty~~-~~~i~as~~G~v~~~------~~~v~V~~~~~~~y~p 56 (179)
T 3m7n_A 2 RFVMPGDRIGSA--EEYVKGEGVYEE-GGELFAAVAGKLIIK------DRVAKVESISPIPEIV 56 (179)
T ss_dssp CEECTTCEEEET--TTSEECTTEEEE-TTEEEESSSEEEEEE------TTEEEEEESSCCCCCC
T ss_pred eEEcCCCCCCCC--CCEeccCCEEEe-CCEEEEEEEEEEEEe------CCEEEEEECCCCcccC
Confidence 478999999754 358999999884 889999999999982 2367888864433333
No 9
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=92.77 E-value=0.2 Score=39.05 Aligned_cols=53 Identities=21% Similarity=0.307 Sum_probs=41.9
Q ss_pred eCCeEEecCcEEEeccCCeEeCCC--CeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCCC
Q 033652 30 FGGERVIPGNIIVRQRGTRFHPGD--YVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGH 92 (114)
Q Consensus 30 ~~Gq~V~~G~IlvRQRGtkfhPG~--NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~ 92 (114)
.+++.|.||+.|... .|.||. ++.. .|..|+|.+-|.|.+.. +.|+|.|....
T Consensus 14 ~~~~iV~PGd~l~~~---~~~~G~~~Gty~-~~g~i~as~~G~v~~~~------~~v~V~p~~~~ 68 (251)
T 2je6_I 14 QPRSIVVPGELLAEG---EFQIPWSPYILK-INSKYYSTVVGLFDVKD------TQFEVIPLEGS 68 (251)
T ss_dssp CSSCEECTTCEEEEE---CCCCCCCTTEEE-ETTEEEECSSEEEEEET------TEEEEEESCCS
T ss_pred CCCcEEcCCCCCccC---CeeeCCCCCEEE-ECCEEEEEEEEEEEEeC------CEEEEEECCCc
Confidence 368899999999853 489999 9987 57789999999998652 25888887653
No 10
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=89.40 E-value=0.075 Score=40.33 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=39.1
Q ss_pred eeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCC
Q 033652 29 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 90 (114)
Q Consensus 29 ~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~ 90 (114)
..+++.|.||+.|... ..|.||.|+.. .|..|||.+-|.|.+... ....+.|+|.|..
T Consensus 16 ~~~~~iV~PGd~l~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~~~-~~~~~vi~V~p~~ 73 (209)
T 2nn6_I 16 APPVRYCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSE-NGALPVVSVVRET 73 (209)
T ss_dssp ----CCCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBC-TTSSBC-CBCCSC
T ss_pred cCCCcEEcCCCCCCCC--CCeeecCCEEE-ECCEEEEEEEEEEEEecc-CCcccEEEEecCC
Confidence 3457889999999854 35899999986 467899999999886532 1234556666653
No 11
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=87.63 E-value=0.44 Score=36.50 Aligned_cols=48 Identities=21% Similarity=0.268 Sum_probs=36.9
Q ss_pred eEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCC
Q 033652 33 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 90 (114)
Q Consensus 33 q~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~ 90 (114)
+.|.||+.|.- ..|.||.|+.. .|..|+|.+-|.|.+.. +.|+|.|..
T Consensus 3 ~iV~PGd~l~~---~~~~~G~Gty~-~~g~i~as~~G~v~~~~------~~v~V~p~~ 50 (229)
T 2ba0_A 3 KIVLPGDLLST---NPRAAGYGTYV-EGGKVYAKIIGLFDQTE------THVRVIPLK 50 (229)
T ss_dssp CEECTTCEEES---CTTSBCTTEEE-ETTEEEECSSEEEEECS------SCEEEEECS
T ss_pred CEEcCCCCccc---CCeEecCCEEE-eCCEEEEEEEEEEEEeC------CEEEEEeCC
Confidence 67999999983 34899999987 67889999999988542 136777644
No 12
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=82.44 E-value=0.68 Score=27.81 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=28.8
Q ss_pred eeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 27 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 27 vK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
+..-.|+.|.+|++|++---.+. ..+|.|+.+|+|.-
T Consensus 19 ~~v~~G~~V~~G~~l~~i~~~~~----------~~~i~ap~~G~v~~ 55 (74)
T 2d5d_A 19 VLVRVGDRVRVGQGLLVLEAMKM----------ENEIPSPRDGVVKR 55 (74)
T ss_dssp ECCCTTCEECTTCEEEEEEETTE----------EEEEECSSSEEEEE
T ss_pred EEcCCCCEeCCCCEEEEEecccc----------eEEEeCCCCEEEEE
Confidence 45568999999999998654433 35899999999863
No 13
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=81.62 E-value=0.75 Score=28.09 Aligned_cols=37 Identities=16% Similarity=0.323 Sum_probs=29.0
Q ss_pred eeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 27 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 27 vK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
+....|+.|.+|++|++-.-.++ ..+|.|+.+|+|.-
T Consensus 22 ~~v~~G~~V~~G~~L~~l~~~~~----------~~~i~Ap~~G~v~~ 58 (77)
T 1dcz_A 22 ILVKEGDTVKAGQTVLVLEAMKM----------ETEINAPTDGKVEK 58 (77)
T ss_dssp ECCCTTCEECTTSEEEEEEETTE----------EEEEECSSSEEEEE
T ss_pred EEcCCcCEEcCCCEEEEEEccce----------eEEEECCCCEEEEE
Confidence 45568999999999998654443 46899999999874
No 14
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=81.12 E-value=1.8 Score=34.94 Aligned_cols=52 Identities=29% Similarity=0.364 Sum_probs=37.5
Q ss_pred eCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCC
Q 033652 30 FGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 90 (114)
Q Consensus 30 ~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~ 90 (114)
.+++.|.||+.|... ..|.||.|+..- |..|+|.+-|.|... .+.|+|.|..
T Consensus 37 ~~~~iVlPGd~L~~~--~~~~~G~Gty~~-~g~I~Asv~G~v~~~------~~~vsV~p~~ 88 (308)
T 2nn6_H 37 TKKHLVVPGDTITTD--TGFMRGHGTYMG-EEKLIASVAGSVERV------NKLICVKALK 88 (308)
T ss_dssp ---CBCCTTCBCCCC--TTCCBCTTEEEC-SSSEEECSSEEEEEE------TTEEEEEESS
T ss_pred CCCcEEeCCCCCCCC--CCEeecCCeEEE-CCEEEEEEEEEEEec------CCEEEEeeCC
Confidence 356789999999853 358999999864 667999999998853 1357777644
No 15
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=78.72 E-value=1.4 Score=33.00 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=25.0
Q ss_pred eeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEE
Q 033652 28 KKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEK 75 (114)
Q Consensus 28 K~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~ 75 (114)
..-+||.|.+|++|+ .|-| -.+-|.+-.+|.|+|..
T Consensus 65 ~V~dG~~V~~G~~la-----ewDp-------~t~pIisE~~G~V~f~d 100 (190)
T 2auk_A 65 AKGDGEQVAGGETVA-----NWDP-------HTMPVITEVSGFVRFTD 100 (190)
T ss_dssp SSCTTCEECTTCEEE-----ECCS-------SEEEEECSSCEEEEEES
T ss_pred EecCCCEEcCCCEEE-----EEcC-------cCCcEEeccccEEEEEe
Confidence 345677777777776 3533 11349999999999975
No 16
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=77.94 E-value=1.7 Score=26.81 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=31.6
Q ss_pred CceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 22 PKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 22 ~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
++=.=+.+-.|+.|.+|++|++---.+ -..+|.|+.+|+|.-
T Consensus 15 G~v~~~~v~~G~~V~~G~~l~~ie~~~----------~~~~i~Ap~~G~v~~ 56 (80)
T 1qjo_A 15 VEVTEVMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVKE 56 (80)
T ss_dssp EEEEECCCCTTCEECBTSEEEEEESSS----------SCEEEEBSSCEEEEE
T ss_pred EEEEEEEcCCCCEECCCCEEEEEEcCC----------ceEEEeCCCCEEEEE
Confidence 333345566899999999999865443 357899999999873
No 17
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=77.12 E-value=1 Score=27.07 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=27.5
Q ss_pred eeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 27 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 27 vK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
+....|+.|.+|++|++=.-.+ ...+|.|+.+|+|.
T Consensus 13 ~~v~~G~~V~~G~~l~~i~~~~----------~~~~i~ap~~G~v~ 48 (72)
T 1z6h_A 13 VHVKAGDQIEKGQEVAILESMK----------MEIPIVADRSGIVK 48 (72)
T ss_dssp ECCCTTCEECTTCEEEEEEETT----------EEEEEECSSCEEEE
T ss_pred EEcCCcCEECCCCEEEEEECCc----------cEEEEECCCCcEEE
Confidence 4556899999999999843221 35689999999986
No 18
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=76.47 E-value=0.67 Score=35.37 Aligned_cols=51 Identities=16% Similarity=0.026 Sum_probs=0.0
Q ss_pred CeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCC
Q 033652 32 GERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE 90 (114)
Q Consensus 32 Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~ 90 (114)
++.|.||+.|.. -.|.||.|+.. .|..|+|.+-|.|.+.. ++..|+|.|..
T Consensus 9 ~~iV~PGd~l~~---~~~~~G~Gty~-~~~~I~Asv~G~v~~~~----~~~~vsV~p~~ 59 (235)
T 2z0s_A 9 GRIVVPGEPLPE---EVEASPPYVID-YKGVKRATVVGLLREKG----DGGGRAFVKLK 59 (235)
T ss_dssp -----------------------------------------------------------
T ss_pred CcEEeCCCCccc---CceEcCCCEEE-ECCEEEEEEeEEEEEeC----CccEEEEEeCC
Confidence 578999999974 34899999876 56789999999988653 23456776643
No 19
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=75.13 E-value=1 Score=27.89 Aligned_cols=39 Identities=15% Similarity=0.082 Sum_probs=30.4
Q ss_pred eceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 25 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 25 LGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
.-+.+-.|+.|.+|++|+.---.+. ..+|.|+.+|+|.-
T Consensus 16 ~~~~v~~Gd~V~~G~~l~~le~~k~----------~~~i~Ap~~G~v~~ 54 (79)
T 1iyu_A 16 IELLVKTGDLIEVEQGLVVLESAKA----------SMEVPSPKAGVVKS 54 (79)
T ss_dssp EEECCCTTCBCCSSSEEEEEECSSC----------EEEEECSSSSEEEE
T ss_pred EEEecCCCCEEcCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 3456678999999999998665443 36899999999873
No 20
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=73.81 E-value=1.7 Score=26.86 Aligned_cols=39 Identities=21% Similarity=0.155 Sum_probs=30.1
Q ss_pred eceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 25 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 25 LGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
.=+.+-.|+.|.+|++|++---.+. .+.|.|+.+|+|.-
T Consensus 19 ~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (79)
T 1ghj_A 19 ATWHKKPGEAVKRDELIVDIETDKV----------VMEVLAEADGVIAE 57 (79)
T ss_dssp CCCSSCTTSEECSSCEEEEEECSSC----------EEEEECSSCEEEEE
T ss_pred EEEEcCCCCEECCCCEEEEEEccce----------eEEEEcCCCEEEEE
Confidence 3355678999999999998655443 37899999999873
No 21
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=73.54 E-value=1.8 Score=28.28 Aligned_cols=37 Identities=27% Similarity=0.413 Sum_probs=28.9
Q ss_pred eeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 27 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 27 vK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
+.+-.|+.|.+|++|++---.++ ..+|.|+.+|+|.-
T Consensus 28 ~~v~~Gd~V~~Gq~L~~ie~~~~----------~~~i~AP~~G~V~~ 64 (99)
T 2ejm_A 28 VFVKAGDKVKAGDSLMVMIAMKM----------EHTIKSPKDGTVKK 64 (99)
T ss_dssp ECCCTTEEECSSCEEEEEESSSS----------EEEEECSSCEEEEE
T ss_pred EECCCCCEECCCCEEEEEEccce----------eEEEECCCCeEEEE
Confidence 45568999999999998544332 35899999999874
No 22
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=72.01 E-value=1.7 Score=26.87 Aligned_cols=36 Identities=22% Similarity=0.184 Sum_probs=28.3
Q ss_pred eeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 28 KKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 28 K~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
.+-.|+.|.+|+.|++---.+. ..+|.|+.+|+|.-
T Consensus 26 ~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 61 (80)
T 1bdo_A 26 FIEVGQKVNVGDTLCIVEAMKM----------MNQIEADKSGTVKA 61 (80)
T ss_dssp SCCTTCEECTTCEEEEEEETTE----------EEEEECSSCEEEEE
T ss_pred ccCCcCEECCCCEEEEEEeccE----------EEEEECCCCEEEEE
Confidence 4568999999999998654432 36799999999873
No 23
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=67.55 E-value=1 Score=27.66 Aligned_cols=38 Identities=11% Similarity=0.034 Sum_probs=29.1
Q ss_pred ceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 26 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 26 GvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
-+..-.|+.|.+|+.|++---.+. ..+|.|+.+|+|.-
T Consensus 20 ~~~v~~G~~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~~ 57 (77)
T 2l5t_A 20 RWDVKEGDMVEKDQDLVEVMTDKV----------TVKIPSPVRGKIVK 57 (77)
T ss_dssp ECSCCTTCEECSCCCCCEEESSSC----------EEECCCCCCEEEEE
T ss_pred EEEeCCCCEECCCCEEEEEEccce----------EEEEECCCCEEEEE
Confidence 355668999999999998655433 36889999999873
No 24
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.92 E-value=3.4 Score=26.97 Aligned_cols=36 Identities=25% Similarity=0.226 Sum_probs=28.9
Q ss_pred eeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 27 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 27 vK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
+.+-.|+.|.+|+.|++---.+. ..+|.|+.+|+|.
T Consensus 31 ~~v~~Gd~V~~Gq~L~~le~~k~----------~~~i~Ap~~G~V~ 66 (100)
T 2dn8_A 31 YTVEDGGHVEAGSSYAEMEVMKM----------IMTLNVQERGRVK 66 (100)
T ss_dssp ESSCTTEEECTTCEEEEEEETTE----------EEEEECSSSEEEE
T ss_pred EEcCCcCEECCCCEEEEEEecce----------EEEEEcCCCEEEE
Confidence 45568999999999998654432 4789999999998
No 25
>2lmc_B DNA-directed RNA polymerase subunit beta; transferase, transcription; NMR {Escherichia coli k-12}
Probab=59.25 E-value=7.1 Score=26.10 Aligned_cols=32 Identities=28% Similarity=0.542 Sum_probs=22.1
Q ss_pred CCCcEEEeeCeEEEEEEecCCCceEEEeEeCCC
Q 033652 59 KDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 91 (114)
Q Consensus 59 kD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~ 91 (114)
|+..+.|-++|+|.|..+. ++++.|.|.|.+.
T Consensus 22 K~~AiIaEi~G~V~i~~~~-k~~r~i~I~~~dG 53 (84)
T 2lmc_B 22 KEPAILAEISGIVSFGKET-KGKRRLVITPVDG 53 (84)
T ss_dssp --CCBSBSSSEEEEEECCS-SSCCEEEEEESSS
T ss_pred CCCEEeecCccEEEEeEec-CCcEEEEEEECCC
Confidence 5678899999999998742 3455567777654
No 26
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=59.20 E-value=0.91 Score=28.77 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=29.0
Q ss_pred eeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 27 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 27 vK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
|.+-.|+.|.+|++|++---.+ ...+|.|+.+|+|.
T Consensus 16 ~~v~~Gd~V~~G~~L~~ie~~k----------~~~~i~Ap~~G~V~ 51 (85)
T 2k7v_A 16 VMVKVGDKVAAEQSLITVEGDK----------ASMEVPAPFAGVVK 51 (85)
T ss_dssp CCCSSSCCCCCSSSCCCCSCCC----------SEEEEECSSCBCCC
T ss_pred EEcCCCCEEcCCCEEEEEEccc----------cEEEEECCCCEEEE
Confidence 5566899999999999865443 35789999999886
No 27
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=58.83 E-value=5.1 Score=25.38 Aligned_cols=40 Identities=15% Similarity=0.153 Sum_probs=30.7
Q ss_pred ceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 23 KNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 23 KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
+=.=|.+-.|+.|.+|+.|+.---.|. .+.|.|..+|+|.
T Consensus 21 ~v~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 60 (87)
T 3crk_C 21 TVQRWEKKVGEKLSEGDLLAEIETDXA----------TIGFEVQEEGYLA 60 (87)
T ss_dssp EEEEECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEE
T ss_pred EEEEEEcCCCCEEcCCCEEEEEECCcc----------cceeecCcCcEEE
Confidence 333466678999999999998655442 4679999999987
No 28
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=57.62 E-value=7.5 Score=24.53 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=29.9
Q ss_pred eceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 25 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 25 LGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
.-+.+-.|+.|.+|+.|+.---.+ -...|.|+.+|+|.-
T Consensus 17 ~~~~v~~Gd~V~~G~~l~~ie~~k----------~~~~i~Ap~~G~v~~ 55 (84)
T 2kcc_A 17 TQYTVEDGGHVEAGSSYAEMEVMK----------MIMTLNVQERGRVKY 55 (84)
T ss_dssp EEESSCTTEEECTTCEEEEEECSS----------CEEEEECSSSEEEEE
T ss_pred EEEECCCCCEECCCCEEEEEEecc----------eeEEEECCCCEEEEE
Confidence 345566899999999999865443 246799999999874
No 29
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=57.27 E-value=2.5 Score=27.45 Aligned_cols=37 Identities=27% Similarity=0.327 Sum_probs=16.3
Q ss_pred ceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 26 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 26 GvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
-+..-.|+.|.+|++|+.---.+. ..+|.|+.+|+|.
T Consensus 38 ~~~v~~Gd~V~~Gq~L~~ie~~k~----------~~~i~AP~~G~V~ 74 (94)
T 2jku_A 38 AVSVKPGDAVAEGQEICVIEAMKM----------QNSMTAGKTGTVK 74 (94)
T ss_dssp EECCCTTCCCCTTCCCEEEEC--------------------------
T ss_pred EEECCCCCEEcCCCEEEEEecccc----------cEEEECCCCEEEE
Confidence 355668999999999998554332 3679999999986
No 30
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=56.41 E-value=17 Score=29.00 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=30.3
Q ss_pred CeEEecCcEEEecc-----C----------------CeEeC--CCCeeecCCCcEEEeeCeEEEEEEec-CCCceEEEeE
Q 033652 32 GERVIPGNIIVRQR-----G----------------TRFHP--GDYVGMGKDHTLYALKEGRVKFEKHK-LSGRKWVHVE 87 (114)
Q Consensus 32 Gq~V~~G~IlvRQR-----G----------------tkfhP--G~NVg~GkD~TLfAl~~G~V~f~~~~-~~~rk~V~V~ 87 (114)
++.|.||+.|.-.- + -.|.| |.++.. .+.+|||..-|.|.+.... .+.-..++|.
T Consensus 39 ~~iVlPGD~L~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~G~Gty~-~~~~I~as~aG~l~~~~~~~~~~~~~v~V~ 117 (289)
T 2nn6_G 39 GQVVLPGEELLLPEQEDAEGPGGAVERPLSLNARACSRVRVVCGPGLRR-CGDRLLVTKCGRLRHKEPGSGSGGGVYWVD 117 (289)
T ss_dssp SSBCCSSEEECCSCSCCEECSSEEECC------------------------CCCEEECSCCEEEEECCTTTSSCCEEEEE
T ss_pred CcEEeCCCCcCccccccccccccccccccccccccCcceEEccCCCeEE-ECCEEEEEEeEeEEeccCCccCccceEEEE
Confidence 67899999997542 1 16788 888765 4678999999999866421 0011356666
Q ss_pred eCC
Q 033652 88 PKE 90 (114)
Q Consensus 88 p~~ 90 (114)
|..
T Consensus 118 ~~~ 120 (289)
T 2nn6_G 118 SQQ 120 (289)
T ss_dssp CCC
T ss_pred ecC
Confidence 654
No 31
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=51.54 E-value=1.8 Score=26.83 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=28.1
Q ss_pred ceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 26 GVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 26 GvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
=+.+-.|+.|.+|+.|+.---.+. ..+|.|+.+|+|.
T Consensus 20 ~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 56 (81)
T 1gjx_A 20 AVEVNVGDTIAVDDTLITLETDKA----------TMDVPAEVAGVVK 56 (81)
T ss_dssp EECCCSSCBCCSSCCCEEEECSSC----------EEEECCCCSSBBC
T ss_pred EEEcCCCCEECCCCEEEEEEeCCc----------EEEEECCCCEEEE
Confidence 355668999999999998654432 4678899999876
No 32
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.74 E-value=8.6 Score=25.25 Aligned_cols=38 Identities=24% Similarity=0.225 Sum_probs=29.6
Q ss_pred eceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 25 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 25 LGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
.=|.+-.|+.|.+|++|+.---.| -.+.|-|..+|+|.
T Consensus 25 ~~~~v~~Gd~V~~G~~L~~ie~~K----------~~~~i~Ap~~G~v~ 62 (98)
T 2dnc_A 25 VKWLKKEGEAVSAGDALCEIETDK----------AVVTLDASDDGILA 62 (98)
T ss_dssp EEESSCTTCEECTTSEEEEEECSS----------CEEEEECSSCEEEE
T ss_pred EEEEcCCCCEeCCCCEEEEEEccc----------ceeEEeCCCCEEEE
Confidence 335667899999999999865544 24678999999987
No 33
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=45.74 E-value=12 Score=36.31 Aligned_cols=61 Identities=21% Similarity=0.354 Sum_probs=40.2
Q ss_pred eeeCCeEEecCcEEEec--cCCeEeCCCC------------eeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCC
Q 033652 28 KKFGGERVIPGNIIVRQ--RGTRFHPGDY------------VGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG 91 (114)
Q Consensus 28 K~~~Gq~V~~G~IlvRQ--RGtkfhPG~N------------Vg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~ 91 (114)
-+.+|+.|.+|+||+|= -..+- .+= ..-=||..+.|-++|+|.|.++. +.++.|.|.|.++
T Consensus 1108 ~v~~g~~v~~g~vlakip~~~~k~--~DIt~GLprv~eLfEar~pk~~a~i~ei~G~v~~~~~~-~~~~~~~i~~~~g 1182 (1407)
T 3lu0_D 1108 QLEDGVQISSGDTLARIPQESGGT--KDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKET-KGKRRLVITPVDG 1182 (1407)
T ss_dssp CCCSSCEECTTCEEECCCCCCCCS--SCCCCSHHHHHHHHTTCCCSSCCCCCSSCSCCEECCCC-SSCEEEECCCSSC
T ss_pred EecCCCEeccCceEEecchhhccc--cchhcCcHHHHHHHhccCCCCceEEeccceEEEEeecc-CCceEEEEEeCCC
Confidence 35689999999999982 22111 111 11126788999999999997664 4555566777655
No 34
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=45.29 E-value=3 Score=25.96 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=28.9
Q ss_pred eceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 25 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 25 LGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
.-|.+-.|+.|.+|+.|+.---.+. .+.|.|+.+|+|.
T Consensus 20 ~~~~v~~Gd~V~~G~~l~~ie~~k~----------~~~i~Ap~~G~v~ 57 (80)
T 1pmr_A 20 ATWHKKPGDAVVRDEVLVEIETDKV----------VLEVPASADGILD 57 (80)
T ss_dssp CBCCCCTTCCBSSSCCBCBCCSSSC----------CCCCBCCSBCCCC
T ss_pred EEEECCCcCEECCCCEEEEEEccce----------EEEEECCCCEEEE
Confidence 3356678999999999998655442 4778899999875
No 35
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=40.93 E-value=8.6 Score=24.89 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=30.6
Q ss_pred CceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 22 PKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 22 ~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
++=.-|.+-.|+.|.+|+.|+.---.|. ...|.|+.+|+|.
T Consensus 19 G~v~~~~v~~Gd~V~~G~~l~~ie~~K~----------~~~i~Ap~~G~V~ 59 (93)
T 1k8m_A 19 VTVKEWYVKEGDTVSQFDSICEVQSDKA----------SVTITSRYDGVIK 59 (93)
T ss_dssp EEEEEECCCTTCEECSSSCCEEEECSSC----------EEECCCSSCEEEE
T ss_pred EEEEEEEcCCcCEECCCCEEEEEEcCCc----------EEEEEcCCCEEEE
Confidence 3434466778999999999998654442 2678899999987
No 36
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=40.35 E-value=12 Score=25.10 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=29.6
Q ss_pred eceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 25 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 25 LGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
.-|.+-.|+.|.+|++|+.---.|- .+.|.|..+|+|.
T Consensus 25 ~~~~v~~Gd~V~~G~~L~~iE~~K~----------~~~i~Ap~~G~V~ 62 (108)
T 2dne_A 25 ARWEKKEGDKINEGDLIAEVETDKA----------TVGFESLEECYMA 62 (108)
T ss_dssp EECSSCTTCEECTTSEEEEEECSSC----------EEEEECSSSEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEEcCcc----------eeEEeCCCCEEEE
Confidence 3356678999999999998655442 4679999999987
No 37
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=33.86 E-value=28 Score=33.77 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=26.6
Q ss_pred eeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEE
Q 033652 28 KKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEK 75 (114)
Q Consensus 28 K~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~ 75 (114)
.+.+||+|.+|++|+- |-| -.+-|.|-++|+|+|..
T Consensus 1004 ~v~~g~~V~~g~~ia~-----wDp-------~~~piise~~G~v~f~d 1039 (1407)
T 3lu0_D 1004 AKGDGEQVAGGETVAN-----WDP-------HTMPVITEVSGFVRFTD 1039 (1407)
T ss_dssp SSCSSCEECTTCEEEE-----CCS-------SCCCEECSSCEEEEEES
T ss_pred EEcCCCEecCCCEEEE-----Eec-------CceeEEeccceEEEEee
Confidence 3457777777777764 666 34679999999999963
No 38
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=32.97 E-value=66 Score=24.80 Aligned_cols=42 Identities=14% Similarity=-0.014 Sum_probs=28.2
Q ss_pred cCCeEeCCCCeeecCCC--cEEEeeCeEEEEEEecCCCceEEEe
Q 033652 45 RGTRFHPGDYVGMGKDH--TLYALKEGRVKFEKHKLSGRKWVHV 86 (114)
Q Consensus 45 RGtkfhPG~NVg~GkD~--TLfAl~~G~V~f~~~~~~~rk~V~V 86 (114)
...++|.|.-+.....- .++|..+|+|.|.......-.+|-|
T Consensus 76 ~~~~~H~GIDi~a~~Gt~~pV~A~~~G~V~~~g~~~~~G~~ViI 119 (245)
T 3tuf_B 76 NTYSLSKGIDLAEKDGKDFDVSASLSGTVVKAEKDPVLGYVVEV 119 (245)
T ss_dssp SEEEECCSEEEEETTCCCCEEECSSCEEEEEEEEETTTEEEEEE
T ss_pred CCccccccEEEeCCCCCcceEEeCcCeEEEEEEecCCCceEEEE
Confidence 34577888777664444 6999999999998653223444544
No 39
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=32.29 E-value=22 Score=24.85 Aligned_cols=36 Identities=17% Similarity=0.241 Sum_probs=28.3
Q ss_pred eeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEE
Q 033652 27 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72 (114)
Q Consensus 27 vK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~ 72 (114)
|.+-.|+.|.+|++|+.---.|- ...|-|..+|+|.
T Consensus 47 ~~V~~Gd~V~~Gd~L~~iEa~K~----------~~~I~Ap~~G~V~ 82 (128)
T 1y8o_B 47 WEKKVGEKLSEGDLLAEIETDKA----------TIGFEVQEEGYLA 82 (128)
T ss_dssp ECSCTTCEECTTCEEEEEECSSC----------EEEEECCSCEEEE
T ss_pred EecCCCCEecCCCEEEEEEcCcc----------eeEEeCCCCeEEE
Confidence 55667899999999987665542 4678999999987
No 40
>4hu2_A Probable conserved lipoprotein LPPS; cell-WALL, transpeptidase, immunoglobuline-fold, peptidoglyc unknown function; 1.46A {Mycobacterium tuberculosis}
Probab=31.11 E-value=35 Score=25.94 Aligned_cols=58 Identities=22% Similarity=0.330 Sum_probs=40.6
Q ss_pred eccCCeEeCCCCeeecCCCcEEEee---CeE----EEEEEecCCCceEEEeEeCCCCc---ccccccc
Q 033652 43 RQRGTRFHPGDYVGMGKDHTLYALK---EGR----VKFEKHKLSGRKWVHVEPKEGHV---LHPLYAN 100 (114)
Q Consensus 43 RQRGtkfhPG~NVg~GkD~TLfAl~---~G~----V~f~~~~~~~rk~V~V~p~~~~~---~~p~~~~ 100 (114)
..-|+.|.|-+..+.|+.||+-|.. +|. ..|+.-...+....++.|.+.+. -+|+-.+
T Consensus 54 s~Dg~~W~~~~~L~~g~~Ytv~a~a~~~~G~~~~~~tFtT~~p~~~~~~~~~P~~g~tVGVg~Pv~v~ 121 (198)
T 4hu2_A 54 SPDGLRWSTTEQLGYNRRYTLNATALGLGGAATRQLTFQTSSPAHLTMPYVMPGDGEVVGVGEPVAIR 121 (198)
T ss_dssp CTTSSEEEECSCCCTTCEEEEEEEEEETTEEEEEEEEEEBCCCSEEECEEEESCTTCEECTTCCEEEE
T ss_pred CCCCCEEeeCCcCCCCCEEEEEEEEECCCCceeeeeEEEEeCCcccceeEEECCCCCEeeCCceEEEE
Confidence 4558999999999999999998886 575 34665443445567778877653 4554443
No 41
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=29.39 E-value=23 Score=23.01 Aligned_cols=19 Identities=16% Similarity=0.151 Sum_probs=15.4
Q ss_pred eeeeCCeEEecCcEEEecc
Q 033652 27 VKKFGGERVIPGNIIVRQR 45 (114)
Q Consensus 27 vK~~~Gq~V~~G~IlvRQR 45 (114)
+..-.||.|.+|++|++-.
T Consensus 15 v~v~~G~~V~~Gq~L~~ld 33 (116)
T 2k32_A 15 KLFKAGDKVKKGQTLFIIE 33 (116)
T ss_dssp ECSCTTSEECTTCEEEEEE
T ss_pred EECCCcCEECCCCEEEEEC
Confidence 4456899999999999843
No 42
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=29.11 E-value=56 Score=25.16 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=27.6
Q ss_pred CeEeCCCCeeecCCC----cEEEeeCeEEEEEEecCCCceEEEeE
Q 033652 47 TRFHPGDYVGMGKDH----TLYALKEGRVKFEKHKLSGRKWVHVE 87 (114)
Q Consensus 47 tkfhPG~NVg~GkD~----TLfAl~~G~V~f~~~~~~~rk~V~V~ 87 (114)
.++|.|.-......- .++|..+|+|.+.......-.+|-|.
T Consensus 122 ~~~H~GiDi~a~~Gt~~~~pV~A~~~G~V~~~g~~~~~G~~V~I~ 166 (252)
T 3nyy_A 122 KRGHEGTDIMAEKNTPGYYPVVSMTDGVVTEKGWLEKGGWRIGIT 166 (252)
T ss_dssp CTTCCCEEEEESSCCTTCSEEECSSCEEEEEEEEETTTEEEEEEE
T ss_pred CccCccEEEecCCCCCCCceEEeccCEEEEEEEecCCCCCEEEEE
Confidence 467887766665554 79999999999876532334445443
No 43
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=27.98 E-value=23 Score=26.20 Aligned_cols=17 Identities=24% Similarity=0.446 Sum_probs=13.4
Q ss_pred eeeeCCeEEecCcEEEe
Q 033652 27 VKKFGGERVIPGNIIVR 43 (114)
Q Consensus 27 vK~~~Gq~V~~G~IlvR 43 (114)
+...+|+.|.+|+||+|
T Consensus 168 i~v~dG~~V~~GdvLAr 184 (190)
T 2auk_A 168 VQLEDGVQISSGDTLAR 184 (190)
T ss_dssp ESSCTTCEECTTCEEEE
T ss_pred EEEcCCCEEcCCCEEEE
Confidence 45678888888888887
No 44
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=24.98 E-value=72 Score=24.63 Aligned_cols=40 Identities=10% Similarity=-0.058 Sum_probs=28.5
Q ss_pred CCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEe
Q 033652 31 GGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKH 76 (114)
Q Consensus 31 ~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~ 76 (114)
-|+.|.+|++|.+..-. +.+|+. -..|.|..+|.|-+-..
T Consensus 274 ~g~~V~~G~~la~i~dp-~~~G~~-----~~~v~Ap~dGiv~~~~~ 313 (332)
T 2qj8_A 274 VMDEVEQGDVVGVLHPM-GSLSAA-----SIDIRAQSKSTVFAIRS 313 (332)
T ss_dssp TTCEECTTCEEEEEECT-TCSSSC-----CEEEECSSSEEEEEEEC
T ss_pred CCCEeCCCCEEEEEECC-CCCCCe-----eEEEEeCCCeEEEEEeC
Confidence 58888899998887543 224431 24699999999987753
No 45
>1o5u_A Novel thermotoga maritima enzyme TM1112; cupin, structural genomics center for structural genomics, JCSG, protein structure INI PSI; 1.83A {Thermotoga maritima} SCOP: b.82.1.8 PDB: 1lkn_A 2k9z_A
Probab=21.61 E-value=1.3e+02 Score=19.36 Aligned_cols=35 Identities=23% Similarity=0.343 Sum_probs=20.9
Q ss_pred EEecCcEEEecc-C--CeEeCCCCeeecCC--CcEEEeeC
Q 033652 34 RVIPGNIIVRQR-G--TRFHPGDYVGMGKD--HTLYALKE 68 (114)
Q Consensus 34 ~V~~G~IlvRQR-G--tkfhPG~NVg~GkD--~TLfAl~~ 68 (114)
+|..|.+.+.-- | ..+.||+-+-+..+ |++.+..+
T Consensus 54 ~Vl~G~~~~~i~~g~~~~l~~GD~i~ip~g~~H~~~n~~~ 93 (101)
T 1o5u_A 54 YILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEP 93 (101)
T ss_dssp EEEEEEEEEEETTCCEEEEETTCEEEECTTCEEEEEEEEE
T ss_pred EEEeCEEEEEECCCCEEEECCCCEEEECCCCcEEEEeCCC
Confidence 566676666654 3 46677777777665 45544433
No 46
>3myx_A Uncharacterized protein pspto_0244; protein of unknown function (DUF861), cupin_3 (PF05899), STR genomics; HET: MSE; 1.30A {Pseudomonas syringae PV}
Probab=20.46 E-value=1.5e+02 Score=22.68 Aligned_cols=40 Identities=8% Similarity=0.165 Sum_probs=31.3
Q ss_pred EEecCcEEEeccC--CeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033652 34 RVIPGNIIVRQRG--TRFHPGDYVGMGKDHTLYALKEGRVKF 73 (114)
Q Consensus 34 ~V~~G~IlvRQRG--tkfhPG~NVg~GkD~TLfAl~~G~V~f 73 (114)
+|..|++.+...| ..+.||+-+-+.+...+-.-++..|++
T Consensus 70 ~VleG~~~lt~~g~~~~~~~Gd~~~ip~G~~~~w~~~~~~~~ 111 (238)
T 3myx_A 70 VMHRGSVTLTSGTDSVTLSTGESAVIGRGTQVRIDAQPESLW 111 (238)
T ss_dssp EEEESEEEEEETTEEEEEETTCEEEECTTCCEEEEECTTEEE
T ss_pred EEEEeEEEEECCCeEEEEcCCCEEEECCCCEEEEEecCCeEE
Confidence 5778999997644 689999999999997776666666654
Done!