RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 033652
(114 letters)
>gnl|CDD|235464 PRK05435, rpmA, 50S ribosomal protein L27; Validated.
Length = 82
Score = 144 bits (366), Expect = 1e-46
Identities = 54/82 (65%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
Query: 6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
A KK GST+NGRDS+ K LGVK+FGG+ V GNIIVRQRGT+FHPG VG GKDHTL+A
Sbjct: 2 AHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFA 61
Query: 66 LKEGRVKFEKHKLSGRKWVHVE 87
L +G VKFE+ K RK+V V
Sbjct: 62 LVDGVVKFER-KGRNRKYVSVV 82
>gnl|CDD|201553 pfam01016, Ribosomal_L27, Ribosomal L27 protein.
Length = 80
Score = 139 bits (354), Expect = 5e-45
Identities = 58/81 (71%), Positives = 64/81 (79%), Gaps = 1/81 (1%)
Query: 6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
A KK GSTKNGRDS K LGVKKFGG+ V GNIIVRQRGT+FHPG+ VGMGKDHTL+A
Sbjct: 1 AHKKGGGSTKNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFA 60
Query: 66 LKEGRVKFEKHKLSGRKWVHV 86
L +G VKFEK K RK+V V
Sbjct: 61 LVDGYVKFEK-KPKNRKYVSV 80
>gnl|CDD|223289 COG0211, RpmA, Ribosomal protein L27 [Translation, ribosomal
structure and biogenesis].
Length = 87
Score = 132 bits (335), Expect = 5e-42
Identities = 55/85 (64%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
Query: 6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
A KK GST+NGRDS+ K LGVKKFGG+ V G+IIVRQRGT+FHPG VG GKDHTL+A
Sbjct: 2 AHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLFA 61
Query: 66 LKEGRVKFEKHKLSGRKWVHVEPKE 90
L +G VKFE K RK+V V P+
Sbjct: 62 LVDGVVKFET-KGKNRKYVSVVPEA 85
>gnl|CDD|214370 CHL00121, rpl27, ribosomal protein L27; Reviewed.
Length = 86
Score = 121 bits (306), Expect = 1e-37
Identities = 49/77 (63%), Positives = 57/77 (74%)
Query: 6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
A KK AGSTKNGRDS K LGVK+FGGE+V GNI++RQRGT+F PG VG GKD TLYA
Sbjct: 2 AHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYA 61
Query: 66 LKEGRVKFEKHKLSGRK 82
L +G VKF+K +
Sbjct: 62 LIDGFVKFKKKNKKQKS 78
>gnl|CDD|232803 TIGR00062, L27, ribosomal protein L27. Eubacterial, chloroplast,
and mitochondrial. Mitochondrial members have an
additional C-terminal domain [Protein synthesis,
Ribosomal proteins: synthesis and modification].
Length = 83
Score = 109 bits (275), Expect = 6e-33
Identities = 55/82 (67%), Positives = 64/82 (78%)
Query: 6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
ATKK GSTKNGRDS+ K LGVK+ GG+ V G+IIVRQRGT+FHPG+ VGMGKDHTL+A
Sbjct: 2 ATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTKFHPGNNVGMGKDHTLFA 61
Query: 66 LKEGRVKFEKHKLSGRKWVHVE 87
L +G VKFEK RK+V V
Sbjct: 62 LSDGVVKFEKKGKRSRKFVSVV 83
>gnl|CDD|214363 CHL00099, ilvB, acetohydroxyacid synthase large subunit.
Length = 585
Score = 31.6 bits (72), Expect = 0.057
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 15 KNGRDSK-----PKNLGVKKFGGERVIPGNIIVRQRGTRF 49
K+GR PK++G++KF PGN I++ G R
Sbjct: 159 KHGRPGPVLIDIPKDVGLEKFDYYPPEPGNTIIKILGCRP 198
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 27.8 bits (62), Expect = 1.3
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Query: 31 GGERVIPGNIIVRQRGTRF--HPGDYVGMGKDHTLYA 65
ER PG+IIV + G RF G Y+ +G+ +YA
Sbjct: 334 NSERSKPGSIIVDRAGRRFVNEAGSYMEVGR--AMYA 368
>gnl|CDD|236111 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 557
Score = 26.9 bits (60), Expect = 2.2
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 33 ERVIPGNIIVRQRGTRF 49
ER +PG+IIV G RF
Sbjct: 333 ERNLPGSIIVNMSGKRF 349
>gnl|CDD|237226 PRK12845, PRK12845, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 564
Score = 27.0 bits (60), Expect = 2.3
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 33 ERVIPGNIIVRQRGTRF--HPGDYVGMGK 59
ER +PG++IV Q G RF DY+ G+
Sbjct: 344 ERSLPGSLIVDQTGRRFVNEATDYMSFGQ 372
>gnl|CDD|130990 TIGR01935, NOT-MenG, RraA famliy. The E. coli member of this
family has been characterized as a regulator of RNase E
and its crystal structure has been analyzed. This model
was initially classified as a "hypothetical equivalog"
expressing the tentative hypothesis that all members
might have the same function as the E. coli enzyme.
Considering the second clade of enterobacterial
sequences within this family, that appears to be less
tenable. The function of these sequences outside of the
narrow RraA equivalog model (TIGR02998) remains obscure.
All of these were initially annotated as MenG, AKA
S-adenosylmethionine: 2-demethylmenaquinone
methyltransferase (EC 2.1.-.-). See the references
characterizing this as a case of transitive annotation
error in the case of the E. coli protein [Unknown
function, General].
Length = 150
Score = 25.4 bits (56), Expect = 6.8
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 15/43 (34%)
Query: 24 NLGVKKFG-----------GERVIPGNIIVRQRGTRFHPGDYV 55
+LGVK GE +P G F PGDY+
Sbjct: 102 DLGVKALAAHPRKTEKRGAGEVDVPVTF----AGVTFVPGDYL 140
>gnl|CDD|237674 PRK14326, PRK14326, (dimethylallyl)adenosine tRNA
methylthiotransferase; Provisional.
Length = 502
Score = 25.4 bits (56), Expect = 7.7
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 63 LYALKEGRVKFEKHKLSGR----KWVHVEPKEGH 92
L A EGR H++SGR + VH EG
Sbjct: 396 LVATGEGRKDAATHRMSGRARDGRLVHFTVPEGA 429
>gnl|CDD|215355 PLN02658, PLN02658, homogentisate 1,2-dioxygenase.
Length = 435
Score = 25.4 bits (56), Expect = 7.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 30 FGGERVIPGNIIVRQRGTRF 49
G +V PG I+V RG RF
Sbjct: 164 LGKLQVSPGEIVVIPRGFRF 183
>gnl|CDD|180810 PRK07050, PRK07050, cystathionine beta-lyase; Provisional.
Length = 394
Score = 25.5 bits (56), Expect = 8.4
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 63 LYALKEGRVKFEKHKLSGRK---WVHVEPKEGHVLHP 96
L L +V+ H S + W+ P+ VLHP
Sbjct: 255 LRGLPSLQVRLAAHDRSALEVAEWLKARPEIATVLHP 291
>gnl|CDD|237221 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase; Reviewed.
Length = 584
Score = 25.5 bits (56), Expect = 9.2
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 33 ERVIPGNIIVRQRGTRF 49
ER++P IV G RF
Sbjct: 340 ERMMPAQFIVNGAGKRF 356
>gnl|CDD|236487 PRK09372, PRK09372, ribonuclease activity regulator protein RraA;
Provisional.
Length = 159
Score = 24.7 bits (55), Expect = 10.0
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 32 GERVIPGNIIVRQRGTRFHPGDYV 55
GER ++ V G F PGDY+
Sbjct: 125 GER----DVPVNFGGVTFFPGDYL 144
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.408
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,798,017
Number of extensions: 495858
Number of successful extensions: 372
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 24
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.1 bits)