Citrus Sinensis ID: 033654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA
Secondary Structure (PSIPRED)
ccEEEEEcccccccccccccccccccEEEEccEEEEcccEEEEccccccccccccccccccEEEEEEccEEEEEEEcccccEEEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccccccccccccccHccEEEcccEEEccccEEEEccccEEccccccccccccEEEEEEccEEEEEEccccccEEEEEEEccccccccEEEccccccccHHHHHcc
Coil and Loop (DISEMBL)
mfrrwatkktagstkngrdskpknlgvkkfggervipgniivrqrgtrfhpgdyvgmgkdhtLYALKEGRVKFEKhklsgrkwvhvepkeghvlhplyanatanasspqletaa
Flexible Loop (DISEMBL)
mfrrwatkktagstkngrdskpknlgvkkfggervipgniivrqrgtrfhpgdyvgmgkDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYAnatanasspqletaa
Low Complexity Region (SEG)
MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA
Disordered region (IsUnstruct)
**************************VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYA***************
Disordered Region (DISOPRED)
MFRR*******************NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPL*****************
Disordered Region (DISEMBL)
*******************SKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATA***********
Disordered Region (DISPRO)
*****A*****************NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANA*************
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q83ED9	90	50S ribosomal protein L27	yes	no	0.754	0.955	0.639	3e-25
A9NBL4	90	50S ribosomal protein L27	yes	no	0.754	0.955	0.639	3e-25
B6J1S9	90	50S ribosomal protein L27	yes	no	0.754	0.955	0.639	3e-25
B6J9K3	90	50S ribosomal protein L27	yes	no	0.754	0.955	0.639	3e-25
A9KEJ8	90	50S ribosomal protein L27	yes	no	0.754	0.955	0.639	5e-25
A9IM57	89	50S ribosomal protein L27	yes	no	0.719	0.921	0.674	6e-25
Q2VZU3	89	50S ribosomal protein L27	yes	no	0.728	0.932	0.678	6e-25
Q87SU3	85	50S ribosomal protein L27	yes	no	0.745	1.0	0.635	1e-24
A7N0G1	85	50S ribosomal protein L27	yes	no	0.745	1.0	0.635	1e-24
C3LRG7	86	50S ribosomal protein L27	yes	no	0.754	1.0	0.627	1e-24

>sp|Q83ED9|RL27_COXBU 50S ribosomal protein L27 OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=rpmA PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1  MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPKE 90
          AL EG+VKF +     R +V +EP E
Sbjct: 61 ALIEGKVKFTRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

>sp|A9NBL4|RL27_COXBR 50S ribosomal protein L27 OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=rpmA PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1  MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPKE 90
          AL EG+VKF +     R +V +EP E
Sbjct: 61 ALIEGKVKFTRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain RSA 331 / Henzerling II) (taxid: 360115)

>sp|B6J1S9|RL27_COXB2 50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuG_Q212) GN=rpmA PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1  MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPKE 90
          AL EG+VKF +     R +V +EP E
Sbjct: 61 ALIEGKVKFTRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain CbuG_Q212) (taxid: 434923)

>sp|B6J9K3|RL27_COXB1 50S ribosomal protein L27 OS=Coxiella burnetii (strain CbuK_Q154) GN=rpmA PE=3 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1  MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPKE 90
          AL EG+VKF +     R +V +EP E
Sbjct: 61 ALIEGKVKFTRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain CbuK_Q154) (taxid: 434924)

>sp|A9KEJ8|RL27_COXBN 50S ribosomal protein L27 OS=Coxiella burnetii (strain Dugway 5J108-111) GN=rpmA PE=3 SV=1

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLY
Sbjct: 1  MAHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLY 60

Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPKE 90
          AL EG+VKF +     R +V +EP E
Sbjct: 61 ALIEGKVKFIRKGPKKRNFVSIEPLE 86

Coxiella burnetii (strain Dugway 5J108-111) (taxid: 434922)

>sp|A9IM57|RL27_BART1 50S ribosomal protein L27 OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=rpmA PE=3 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 1/83 (1%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GS++NGRDS+ K LGVKKFGGE VI GNIIVRQRGTR+HPGD VG+GKDHTL+A
Sbjct: 2  AHKKAGGSSRNGRDSESKRLGVKKFGGESVIAGNIIVRQRGTRWHPGDNVGIGKDHTLFA 61

Query: 66 LKEGRVKFEKHKLSGRKWVHVEP 88
          L EG+V F++ K   R +V V P
Sbjct: 62 LSEGKVSFQR-KAGNRSYVSVIP 83

Bartonella tribocorum (strain CIP 105476 / IBS 506) (taxid: 382640)

>sp|Q2VZU3|RL27_MAGSA 50S ribosomal protein L27 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpmA PE=3 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/84 (67%), Positives = 65/84 (77%), Gaps = 1/84 (1%)

Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GS++NGRDS  + LGVKKFGGE VIPGNIIVRQRGT+F+PG  VGMGKDHTL+
Sbjct: 1  MAHKKAGGSSRNGRDSAGQRLGVKKFGGELVIPGNIIVRQRGTKFYPGTNVGMGKDHTLF 60

Query: 65 ALKEGRVKFEKHKLSGRKWVHVEP 88
          A   G+V F KHK  GR +V VEP
Sbjct: 61 ATAMGKVSF-KHKAEGRTFVVVEP 83

Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) (taxid: 342108)

>sp|Q87SU3|RL27_VIBPA 50S ribosomal protein L27 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpmA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+
Sbjct: 1  MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLF 60

Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPK 89
          AL EG+VKFE      RK+V +E +
Sbjct: 61 ALTEGKVKFEVKGPKNRKFVSIEAE 85

Vibrio parahaemolyticus (taxid: 670)

>sp|A7N0G1|RL27_VIBHB 50S ribosomal protein L27 OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=rpmA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G+ VG+GKDHTL+
Sbjct: 1  MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGNNVGIGKDHTLF 60

Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPK 89
          AL EG+VKFE      RK+V +E +
Sbjct: 61 ALTEGKVKFEVKGPKNRKFVSIEAE 85

Vibrio harveyi (strain ATCC BAA-1116 / BB120) (taxid: 338187)

>sp|C3LRG7|RL27_VIBCM 50S ribosomal protein L27 OS=Vibrio cholerae serotype O1 (strain M66-2) GN=rpmA PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+
Sbjct: 1  MAHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLF 60

Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPKE 90
          AL +G+VKFE    + RK+V +E  E
Sbjct: 61 ALSDGKVKFEVKGPNNRKFVSIETAE 86

Vibrio cholerae serotype O1 (strain M66-2) (taxid: 579112)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
255538646	152	ribosomal protein L27, putative [Ricinus	0.982	0.736	0.842	6e-50
359475326	146	PREDICTED: 50S ribosomal protein L27-lik	0.964	0.753	0.842	1e-49
297741460	136	unnamed protein product [Vitis vinifera]	0.964	0.808	0.842	2e-49
358248158	147	uncharacterized protein LOC100782419 [Gl	0.964	0.748	0.831	1e-48
313586473	149	Mitochondrial 50S ribosomal protein L27	0.982	0.751	0.824	1e-48
449442805	148	PREDICTED: 50S ribosomal protein L27-lik	0.973	0.75	0.833	2e-48
357456365	148	50S ribosomal protein L27 [Medicago trun	0.973	0.75	0.823	2e-48
356541149	285	PREDICTED: uncharacterized protein LOC10	0.964	0.385	0.814	4e-48
255648142	147	unknown [Glycine max]	0.964	0.748	0.805	3e-47
388496050	181	unknown [Lotus japonicus]	0.894	0.563	0.852	7e-47

>gi|255538646|ref|XP_002510388.1| ribosomal protein L27, putative [Ricinus communis] gi|223551089|gb|EEF52575.1| ribosomal protein L27, putative [Ricinus communis]

 Score =  201 bits (510), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 96/114 (84%), Positives = 105/114 (92%), Gaps = 2/114 (1%)

Query: 1   MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
           MFRRWATK+TAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVGMGKD
Sbjct: 41  MFRRWATKRTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGMGKD 100

Query: 61  HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
           HTLYALKEG VKFE HKLSGRKWVHVEPK+G+ LHP+YA   AN++S  L+ A+
Sbjct: 101 HTLYALKEGNVKFETHKLSGRKWVHVEPKDGYELHPVYAQ--ANSASTHLKIAS 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475326|ref|XP_003631656.1| PREDICTED: 50S ribosomal protein L27-like [Vitis vinifera]

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/114 (84%), Positives = 105/114 (92%), Gaps = 4/114 (3%)

Query: 1   MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
           +F RWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKD
Sbjct: 37  IFMRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKD 96

Query: 61  HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
           HTLYALKEG VKFEKHKLSGRKWVHVEPK+GHVLHP+YA+A A    P+L+T  
Sbjct: 97  HTLYALKEGCVKFEKHKLSGRKWVHVEPKDGHVLHPVYADAAA----PRLKTTV 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741460|emb|CBI32591.3| unnamed protein product [Vitis vinifera]

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/114 (84%), Positives = 105/114 (92%), Gaps = 4/114 (3%)

Query: 1   MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
           +F RWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKD
Sbjct: 27  IFMRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKD 86

Query: 61  HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
           HTLYALKEG VKFEKHKLSGRKWVHVEPK+GHVLHP+YA+A A    P+L+T  
Sbjct: 87  HTLYALKEGCVKFEKHKLSGRKWVHVEPKDGHVLHPVYADAAA----PRLKTTV 136

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248158|ref|NP_001240083.1| uncharacterized protein LOC100782419 [Glycine max] gi|255638454|gb|ACU19536.1| unknown [Glycine max] gi|255638528|gb|ACU19572.1| unknown [Glycine max]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 106/113 (93%), Gaps = 3/113 (2%)

Query: 2   FRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDH 61
           FRRWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDH
Sbjct: 38  FRRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDH 97

Query: 62  TLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
           +L+ALKEG VKFE++KL+GRKWVHVEPKEGHVLHPLYA   A+AS+ +L+ A 
Sbjct: 98  SLFALKEGWVKFERNKLTGRKWVHVEPKEGHVLHPLYA---ADASASELKVAV 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586473|gb|ADR71247.1| Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/114 (82%), Positives = 106/114 (92%), Gaps = 2/114 (1%)

Query: 1   MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
           + RRWATKKTAGSTKNGRDSKPKNLGVKKFGGE+VIPGNIIVRQRGTRFHPG+YVGMGKD
Sbjct: 38  ILRRWATKKTAGSTKNGRDSKPKNLGVKKFGGEKVIPGNIIVRQRGTRFHPGNYVGMGKD 97

Query: 61  HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
           HTLYALKEG VKFE +KLSGRKWVHVEPK+G+ LHP+Y  ATA+ +S +L+TA+
Sbjct: 98  HTLYALKEGNVKFETNKLSGRKWVHVEPKDGYELHPVY--ATASVASSRLKTAS 149

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442805|ref|XP_004139171.1| PREDICTED: 50S ribosomal protein L27-like [Cucumis sativus] gi|449482828|ref|XP_004156416.1| PREDICTED: 50S ribosomal protein L27-like [Cucumis sativus]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 103/114 (90%), Gaps = 3/114 (2%)

Query: 1   MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
           +FRRWATKKTAGSTKNGRDS PK LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVG+GKD
Sbjct: 38  LFRRWATKKTAGSTKNGRDSNPKYLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGIGKD 97

Query: 61  HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
           HTL+ALKEG VKFEK+KLSGRKWVHV PKEGHVLHP+Y      ++S QL+TAA
Sbjct: 98  HTLFALKEGNVKFEKNKLSGRKWVHVIPKEGHVLHPVYE---TTSTSLQLKTAA 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357456365|ref|XP_003598463.1| 50S ribosomal protein L27 [Medicago truncatula] gi|217071060|gb|ACJ83890.1| unknown [Medicago truncatula] gi|355487511|gb|AES68714.1| 50S ribosomal protein L27 [Medicago truncatula] gi|388495594|gb|AFK35863.1| unknown [Medicago truncatula] gi|388500166|gb|AFK38149.1| unknown [Medicago truncatula]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 93/113 (82%), Positives = 106/113 (93%), Gaps = 2/113 (1%)

Query: 1   MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
           +FRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKD
Sbjct: 37  VFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKD 96

Query: 61  HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETA 113
           HTL+ALKEG VKFE++KL+GRKWVHVEPKEGHVLHP++A+ +  AS P++  A
Sbjct: 97  HTLFALKEGWVKFERNKLTGRKWVHVEPKEGHVLHPVFADVS--ASEPKVGVA 147

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356541149|ref|XP_003539043.1| PREDICTED: uncharacterized protein LOC100817864 [Glycine max]

 Score =  194 bits (494), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 92/113 (81%), Positives = 105/113 (92%), Gaps = 3/113 (2%)

Query: 2   FRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDH 61
           FRRWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKDH
Sbjct: 176 FRRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDH 235

Query: 62  TLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
           +L+ALKEG VKFE++KL+GRKWVH+EPKEGHVLHPLYA   A+ S+ +L+ A 
Sbjct: 236 SLFALKEGWVKFERNKLTGRKWVHIEPKEGHVLHPLYA---ADGSASELKVAV 285

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648142|gb|ACU24525.1| unknown [Glycine max]

 Score =  191 bits (486), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 91/113 (80%), Positives = 104/113 (92%), Gaps = 3/113 (2%)

Query: 2   FRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDH 61
           FRRWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKD 
Sbjct: 38  FRRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGLGKDR 97

Query: 62  TLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
           +L+ALKEG VKFE++KL+GRKWVH+EPKEGHVLHPLYA   A+ S+ +L+ A 
Sbjct: 98  SLFALKEGWVKFERNKLTGRKWVHIEPKEGHVLHPLYA---ADGSASELKVAV 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496050|gb|AFK36091.1| unknown [Lotus japonicus]

 Score =  191 bits (484), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 87/102 (85%), Positives = 99/102 (97%)

Query: 1   MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
           +F RWA+KKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPG+YVG+GKD
Sbjct: 72  VFSRWASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKD 131

Query: 61  HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANAT 102
           HTL+ALK+G VKFE++KL+GRKWVHVEPKEGHVLHP+Y +A+
Sbjct: 132 HTLFALKQGLVKFERNKLTGRKWVHVEPKEGHVLHPVYESAS 173

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
TAIR|locus:2150881	154	AT5G15220 [Arabidopsis thalian	0.991	0.733	0.780	1.8e-46
TAIR|locus:2039390	154	AT2G16930 [Arabidopsis thalian	0.991	0.733	0.771	1.6e-45
TIGR_CMR|CBU_0386	90	CBU_0386 "ribosomal protein L2	0.745	0.944	0.647	1.8e-25
UNIPROTKB|Q9KUS9	86	rpmA "50S ribosomal protein L2	0.745	0.988	0.635	1.2e-24
TIGR_CMR|VC_0436	86	VC_0436 "ribosomal protein L27	0.745	0.988	0.635	1.2e-24
TIGR_CMR|NSE_0897	82	NSE_0897 "ribosomal protein L2	0.701	0.975	0.679	2e-24
TIGR_CMR|CPS_4511	85	CPS_4511 "ribosomal protein L2	0.710	0.952	0.641	8.7e-24
TIGR_CMR|SO_3651	84	SO_3651 "ribosomal protein L27	0.719	0.976	0.621	1.4e-23
DICTYBASE|DDB_G0278889	142	mrpl27 "ribosomal protein L27,	0.824	0.661	0.555	2.3e-23
UNIPROTKB|P0A7L8	85	rpmA "50S ribosomal subunit pr	0.719	0.964	0.597	3.4e-22

TAIR|locus:2150881 AT5G15220 [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 89/114 (78%), Positives = 102/114 (89%)

Query:     1 MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
             +F+RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVG+GKD
Sbjct:    42 VFKRWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKD 101

Query:    61 HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
             HTL+ALKEGRV+FEK K++GRKW+HV+P  GHVLHP+Y  A A A S +L+TA+
Sbjct:   102 HTLFALKEGRVRFEKSKITGRKWIHVDPTGGHVLHPIYTKAAA-AQSTKLKTAS 154

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2039390 AT2G16930 [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 88/114 (77%), Positives = 100/114 (87%)

Query:     1 MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
             + +RWATKKTAGSTKNGRDS PK LGVKKFGGE VIPGNIIVRQRGTRFHPGDYVG+GKD
Sbjct:    42 VLKRWATKKTAGSTKNGRDSNPKFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKD 101

Query:    61 HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANATANASSPQLETAA 114
             HTL+ALKEGRV+FEK K++GRKW+HV+P  GHVLHP+Y  A A A S +L TA+
Sbjct:   102 HTLFALKEGRVRFEKSKITGRKWIHVDPIGGHVLHPIYTKAAA-AKSTKLNTAS 154

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

TIGR_CMR|CBU_0386 CBU_0386 "ribosomal protein L27" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 55/85 (64%), Positives = 66/85 (77%)

Query:     6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
             A KK  GST+NGRDS PK LGVK+FGGERV+ GNIIVRQRGT + PG+ +GMG+DHTLYA
Sbjct:     2 AHKKAGGSTRNGRDSNPKMLGVKRFGGERVLAGNIIVRQRGTHYRPGENMGMGRDHTLYA 61

Query:    66 LKEGRVKFEKHKLSGRKWVHVEPKE 90
             L EG+VKF +     R +V +EP E
Sbjct:    62 LIEGKVKFTRKGPKKRNFVSIEPLE 86

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|Q9KUS9 rpmA "50S ribosomal protein L27" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query:     6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
             A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+A
Sbjct:     2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFA 61

Query:    66 LKEGRVKFEKHKLSGRKWVHVEPKE 90
             L +G+VKFE    + RK+V +E  E
Sbjct:    62 LSDGKVKFEVKGPNNRKFVSIETAE 86

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_0436 VC_0436 "ribosomal protein L27" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query:     6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
             A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+GKDHTL+A
Sbjct:     2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGTNVGIGKDHTLFA 61

Query:    66 LKEGRVKFEKHKLSGRKWVHVEPKE 90
             L +G+VKFE    + RK+V +E  E
Sbjct:    62 LSDGKVKFEVKGPNNRKFVSIETAE 86

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|NSE_0897 NSE_0897 "ribosomal protein L27" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 55/81 (67%), Positives = 63/81 (77%)

Query:     6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
             ATKK  GS+ NGRDS  K LGVKKFG ERVIPG+IIVRQRGT+FHPG  VGMG DHT++A
Sbjct:     2 ATKKAGGSSSNGRDSIGKRLGVKKFGSERVIPGDIIVRQRGTKFHPGRNVGMGSDHTIFA 61

Query:    66 LKEGRVKFEKHKLSGRKWVHV 86
             +K G V F    L GR++VHV
Sbjct:    62 MKSGSVSFSVG-LRGRRFVHV 81

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CPS_4511 CPS_4511 "ribosomal protein L27" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 52/81 (64%), Positives = 64/81 (79%)

Query:     6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
             A KK AGST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGTRFH G  +G+GKDHTL+A
Sbjct:     2 AHKKAAGSTRNGRDSEAKRLGVKRFGGESVLAGNIIVRQRGTRFHAGSNMGIGKDHTLFA 61

Query:    66 LKEGRVKFEKHKLSGRKWVHV 86
             L +G+V+FE      RK+V +
Sbjct:    62 LSDGKVQFEVKGPKSRKFVSI 82

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|SO_3651 SO_3651 "ribosomal protein L27" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 51/82 (62%), Positives = 65/82 (79%)

Query:     6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
             A KK  GST+NGRDS+ K LGVK+FGGE V+ GNIIVRQRGT+FH G  VG+G+DHTL+A
Sbjct:     2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTKFHAGVNVGIGRDHTLFA 61

Query:    66 LKEGRVKFEKHKLSGRKWVHVE 87
             L +G+VKFE    + RK++ +E
Sbjct:    62 LTDGKVKFEVKGPNNRKFISIE 83

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

DICTYBASE|DDB_G0278889 mrpl27 "ribosomal protein L27, mitochondrial" [Dictyostelium discoideum (taxid:44689)]

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 55/99 (55%), Positives = 69/99 (69%)

Query:     3 RRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHT 62
             +R+ATKK+AGSTKNGR S+PKNLG+KK G + V PG II+RQRGT FHPG +VGMGKDHT
Sbjct:    23 KRFATKKSAGSTKNGRTSQPKNLGLKKSGNQLVYPGEIIIRQRGTEFHPGTFVGMGKDHT 82

Query:    63 LYALKEGRVKFEKH-KLSGRKWVHVEPKEGHVLHPLYAN 100
             +++   G V F K  K  G K    + +    + PLY N
Sbjct:    83 IFSKTIGLVSFSKEPKFPGSK----KTRRFISVAPLYTN 117

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P0A7L8 rpmA "50S ribosomal subunit protein L27" [Escherichia coli K-12 (taxid:83333)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 49/82 (59%), Positives = 62/82 (75%)

Query:     6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
             A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A
Sbjct:     2 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 61

Query:    66 LKEGRVKFEKHKLSGRKWVHVE 87
               +G+VKFE      RK++ +E
Sbjct:    62 KADGKVKFEVKGPKNRKFISIE 83

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8DEC5	RL27_VIBVU	No assigned EC number	0.6235	0.7456	1.0	yes	no
Q6LV48	RL27_PHOPR	No assigned EC number	0.6309	0.7368	0.9882	yes	no
B0UVI0	RL27_HAES2	No assigned EC number	0.6463	0.7192	0.9647	yes	no
Q87SU3	RL27_VIBPA	No assigned EC number	0.6352	0.7456	1.0	yes	no
A8G8Z2	RL27_SERP5	No assigned EC number	0.6235	0.7456	1.0	yes	no
Q4QM29	RL27_HAEI8	No assigned EC number	0.6219	0.7192	0.9647	yes	no
A9NBL4	RL27_COXBR	No assigned EC number	0.6395	0.7543	0.9555	yes	no
A3D179	RL27_SHEB5	No assigned EC number	0.6071	0.7368	1.0	yes	no
A6WK50	RL27_SHEB8	No assigned EC number	0.6071	0.7368	1.0	yes	no
Q6G507	RL27_BARHE	No assigned EC number	0.6626	0.7192	0.9213	yes	no
B2HXU8	RL27_ACIBC	No assigned EC number	0.6428	0.7368	0.9882	yes	no
B6EL42	RL27_ALISL	No assigned EC number	0.6235	0.7456	1.0	yes	no
Q7VP91	RL27_HAEDU	No assigned EC number	0.6341	0.7192	0.9647	yes	no
C3LRG7	RL27_VIBCM	No assigned EC number	0.6279	0.7543	1.0	yes	no
A9KEJ8	RL27_COXBN	No assigned EC number	0.6395	0.7543	0.9555	yes	no
A3M899	RL27_ACIBT	No assigned EC number	0.6428	0.7368	0.9882	yes	no
B5FGF8	RL27_VIBFM	No assigned EC number	0.6352	0.7456	1.0	yes	no
Q83ED9	RL27_COXBU	No assigned EC number	0.6395	0.7543	0.9555	yes	no
B8EC05	RL27_SHEB2	No assigned EC number	0.6071	0.7368	1.0	yes	no
A5UDJ5	RL27_HAEIE	No assigned EC number	0.6219	0.7192	0.9647	yes	no
B7GXH9	RL27_ACIB3	No assigned EC number	0.6428	0.7368	0.9882	yes	no
A3N3T8	RL27_ACTP2	No assigned EC number	0.6341	0.7192	0.9647	yes	no
Q5E872	RL27_VIBF1	No assigned EC number	0.6352	0.7456	1.0	yes	no
Q7MP93	RL27_VIBVY	No assigned EC number	0.6235	0.7456	1.0	yes	no
B0BU26	RL27_ACTPJ	No assigned EC number	0.6341	0.7192	0.9647	yes	no
Q9KUS9	RL27_VIBCH	No assigned EC number	0.6279	0.7543	1.0	yes	no
Q9CNS7	RL27_PASMU	No assigned EC number	0.6219	0.7192	0.9647	yes	no
Q65S55	RL27_MANSM	No assigned EC number	0.6219	0.7192	0.9647	yes	no
Q2G9U8	RL27_NOVAD	No assigned EC number	0.6506	0.7192	0.9213	yes	no
B7I6V8	RL27_ACIB5	No assigned EC number	0.6428	0.7368	0.9882	yes	no
Q3SKG3	RL27_THIDA	No assigned EC number	0.6190	0.7368	0.9655	yes	no
A7N0G1	RL27_VIBHB	No assigned EC number	0.6352	0.7456	1.0	yes	no
B8F874	RL27_HAEPS	No assigned EC number	0.6341	0.7192	0.9647	yes	no
A5UI24	RL27_HAEIG	No assigned EC number	0.6219	0.7192	0.9647	yes	no
Q0AKX6	RL27_MARMM	No assigned EC number	0.6547	0.7280	0.9325	yes	no
Q11CP4	RL27_MESSB	No assigned EC number	0.6506	0.7192	0.9213	yes	no
Q2VZU3	RL27_MAGSA	No assigned EC number	0.6785	0.7280	0.9325	yes	no
Q2GCN3	RL27_NEOSM	No assigned EC number	0.6707	0.7105	0.9878	yes	no
B0VSH6	RL27_ACIBS	No assigned EC number	0.6428	0.7368	0.9882	yes	no
Q47VL3	RL27_COLP3	No assigned EC number	0.6341	0.7192	0.9647	yes	no
A9IM57	RL27_BART1	No assigned EC number	0.6746	0.7192	0.9213	yes	no
B3GZE6	RL27_ACTP7	No assigned EC number	0.6341	0.7192	0.9647	yes	no
B4RZH4	RL27_ALTMD	No assigned EC number	0.6463	0.7192	0.9647	yes	no
A9L429	RL27_SHEB9	No assigned EC number	0.6071	0.7368	1.0	yes	no
B0VEJ5	RL27_ACIBY	No assigned EC number	0.6428	0.7368	0.9882	yes	no
A5F8P1	RL27_VIBC3	No assigned EC number	0.6279	0.7543	1.0	yes	no
B6J1S9	RL27_COXB2	No assigned EC number	0.6395	0.7543	0.9555	yes	no
Q0I1P7	RL27_HAES1	No assigned EC number	0.6463	0.7192	0.9647	yes	no
A6VMT9	RL27_ACTSZ	No assigned EC number	0.6219	0.7192	0.9647	yes	no
B6J9K3	RL27_COXB1	No assigned EC number	0.6395	0.7543	0.9555	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
PRK05435	82	PRK05435, rpmA, 50S ribosomal protein L27; Validat	1e-46
pfam01016	80	pfam01016, Ribosomal_L27, Ribosomal L27 protein	5e-45
COG0211	87	COG0211, RpmA, Ribosomal protein L27 [Translation,	5e-42
CHL00121	86	CHL00121, rpl27, ribosomal protein L27; Reviewed	1e-37
TIGR00062	83	TIGR00062, L27, ribosomal protein L27	6e-33

>gnl|CDD|235464 PRK05435, rpmA, 50S ribosomal protein L27; Validated

 Score =  144 bits (366), Expect = 1e-46
 Identities = 54/82 (65%), Positives = 63/82 (76%), Gaps = 1/82 (1%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GST+NGRDS+ K LGVK+FGG+ V  GNIIVRQRGT+FHPG  VG GKDHTL+A
Sbjct: 2  AHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFA 61

Query: 66 LKEGRVKFEKHKLSGRKWVHVE 87
          L +G VKFE+ K   RK+V V 
Sbjct: 62 LVDGVVKFER-KGRNRKYVSVV 82

Length = 82

>gnl|CDD|201553 pfam01016, Ribosomal_L27, Ribosomal L27 protein

 Score =  139 bits (354), Expect = 5e-45
 Identities = 58/81 (71%), Positives = 64/81 (79%), Gaps = 1/81 (1%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GSTKNGRDS  K LGVKKFGG+ V  GNIIVRQRGT+FHPG+ VGMGKDHTL+A
Sbjct: 1  AHKKGGGSTKNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGKDHTLFA 60

Query: 66 LKEGRVKFEKHKLSGRKWVHV 86
          L +G VKFEK K   RK+V V
Sbjct: 61 LVDGYVKFEK-KPKNRKYVSV 80

Length = 80

>gnl|CDD|223289 COG0211, RpmA, Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

 Score =  132 bits (335), Expect = 5e-42
 Identities = 55/85 (64%), Positives = 64/85 (75%), Gaps = 1/85 (1%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GST+NGRDS+ K LGVKKFGG+ V  G+IIVRQRGT+FHPG  VG GKDHTL+A
Sbjct: 2  AHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLFA 61

Query: 66 LKEGRVKFEKHKLSGRKWVHVEPKE 90
          L +G VKFE  K   RK+V V P+ 
Sbjct: 62 LVDGVVKFET-KGKNRKYVSVVPEA 85

Length = 87

>gnl|CDD|214370 CHL00121, rpl27, ribosomal protein L27; Reviewed

 Score =  121 bits (306), Expect = 1e-37
 Identities = 49/77 (63%), Positives = 57/77 (74%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK AGSTKNGRDS  K LGVK+FGGE+V  GNI++RQRGT+F PG  VG GKD TLYA
Sbjct: 2  AHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYA 61

Query: 66 LKEGRVKFEKHKLSGRK 82
          L +G VKF+K     + 
Sbjct: 62 LIDGFVKFKKKNKKQKS 78

Length = 86

>gnl|CDD|232803 TIGR00062, L27, ribosomal protein L27

 Score =  109 bits (275), Expect = 6e-33
 Identities = 55/82 (67%), Positives = 64/82 (78%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          ATKK  GSTKNGRDS+ K LGVK+ GG+ V  G+IIVRQRGT+FHPG+ VGMGKDHTL+A
Sbjct: 2  ATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTKFHPGNNVGMGKDHTLFA 61

Query: 66 LKEGRVKFEKHKLSGRKWVHVE 87
          L +G VKFEK     RK+V V 
Sbjct: 62 LSDGVVKFEKKGKRSRKFVSVV 83

Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
COG0211	87	RpmA Ribosomal protein L27 [Translation, ribosomal	100.0
KOG4600	144	consensus Mitochondrial ribosomal protein MRP7 (L2	100.0
CHL00121	86	rpl27 ribosomal protein L27; Reviewed	100.0
TIGR00062	83	L27 ribosomal protein L27. Eubacterial, chloroplas	100.0
PF01016	81	Ribosomal_L27: Ribosomal L27 protein; InterPro: IP	100.0
PRK05435	82	rpmA 50S ribosomal protein L27; Validated	100.0
PF14382	39	ECR1_N: Exosome complex exonuclease RRP4 N-termina	96.03
PRK09521	189	exosome complex RNA-binding protein Csl4; Provisio	95.82
COG1096	188	Predicted RNA-binding protein (consists of S1 doma	94.53
PRK04163	235	exosome complex RNA-binding protein Rrp4; Provisio	93.6
PF03961	451	DUF342: Protein of unknown function (DUF342); Inte	89.75
PF01551	96	Peptidase_M23: Peptidase family M23; InterPro: IPR	88.92
COG1315	543	Uncharacterized conserved protein [Function unknow	80.1

>COG0211 RpmA Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-49  Score=276.46  Aligned_cols=86  Identities=63%  Similarity=0.964  Sum_probs=83.5

Q ss_pred             eeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEE
Q 033654            5 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV   84 (114)
Q Consensus         5 ~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V   84 (114)
                      |||||++|||+|||||++||||+|+++||+|.+|+||||||||+||||+|||||+|||||||+||+|+|+... ++|+||
T Consensus         1 mA~KKg~GSt~NgRDS~~krLGvK~~~Gq~v~aG~IivRQRGTk~hpG~NVG~GkDhTlFAl~dG~Vkf~~k~-~~rk~v   79 (87)
T COG0211           1 MAHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFETKG-KNRKYV   79 (87)
T ss_pred             CcccccccccccCccccccccceeeeCCeEEecccEEEEeccccccCCcccccCCCceEEEeeccEEEEEEcc-CCccEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999986 799999


Q ss_pred             EeEeCCC
Q 033654           85 HVEPKEG   91 (114)
Q Consensus        85 ~V~p~~~   91 (114)
                      +|+|...
T Consensus        80 sV~~~~~   86 (87)
T COG0211          80 SVVPEAE   86 (87)
T ss_pred             EEEeecc
Confidence            9999864

>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.9e-47  Score=286.92  Aligned_cols=106  Identities=64%  Similarity=1.079  Sum_probs=99.0

Q ss_pred             CceEeeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCC-
Q 033654            1 MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLS-   79 (114)
Q Consensus         1 ~~~r~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~-   79 (114)
                      +++|||+||++|||+|+|||+++|||||+|+||+|.||+||||||||+||||+|||||||||||||++|+|+|+++++. 
T Consensus        24 l~vR~AtKk~aGStKN~~dS~grrlGvKk~egq~V~~G~IIvrQRgtkfHPG~nVGiGKDhtifaL~eG~Vrf~k~~~~~  103 (144)
T KOG4600|consen   24 LAVRWATKKGAGSTKNGRDSAGRRLGVKKYEGQSVIPGNIIVRQRGTKFHPGDNVGIGKDHTIFALEEGRVRFEKSKITP  103 (144)
T ss_pred             eeeeeecccccCccccCCCCCcccccceecCCeeeecccEEEEecccccCCCcccccCCcceEEEeeccEEEEEEccCCC
Confidence            3689999999999999999999999999999999999999999999999999999999999999999999999998764 


Q ss_pred             CceEEEeEeCCCCcccccccccccccC
Q 033654           80 GRKWVHVEPKEGHVLHPLYANATANAS  106 (114)
Q Consensus        80 ~rk~V~V~p~~~~~~~p~~~~~~~~~~  106 (114)
                      .|+||+|.|...-.+||.+.++..-..
T Consensus       104 ~Rk~i~V~~~~~~~l~~~~~k~~vr~~  130 (144)
T KOG4600|consen  104 PRKWIGVDPRGGLPLPPPYYKATVRRV  130 (144)
T ss_pred             CcceEEEeecCCccCCCccchhhhhhh
Confidence            599999999999999998887766543

>CHL00121 rpl27 ribosomal protein L27; Reviewed

Probab=100.00  E-value=2.6e-47  Score=266.68  Aligned_cols=84  Identities=61%  Similarity=0.907  Sum_probs=81.2

Q ss_pred             eeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEE
Q 033654            5 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV   84 (114)
Q Consensus         5 ~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V   84 (114)
                      |||||++|||+|||||+|||||+|+++||+|.||+||||||||+||||+||+|||||||||+++|+|+|++.+ +++++|
T Consensus         1 mA~KK~~GStkNgrdS~~KrLGvK~~~gq~V~~G~IivRQRGtk~hPG~NVg~GrD~TlfAl~~G~V~f~~~~-~~~~~v   79 (86)
T CHL00121          1 MAHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYALIDGFVKFKKKN-KKQKSI   79 (86)
T ss_pred             CCcccccCcCCCCCCCCcccceeEEcCCEEEcCCcEEEEcCCCeECCCCcccccCCceEEEccceEEEEEEeC-CCCEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999874 588899


Q ss_pred             EeEeC
Q 033654           85 HVEPK   89 (114)
Q Consensus        85 ~V~p~   89 (114)
                      +|+|.
T Consensus        80 sv~~~   84 (86)
T CHL00121         80 NVINI   84 (86)
T ss_pred             EEeec
Confidence            99986

>TIGR00062 L27 ribosomal protein L27

Probab=100.00  E-value=3.3e-47  Score=264.67  Aligned_cols=83  Identities=66%  Similarity=0.990  Sum_probs=80.3

Q ss_pred             eeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEE
Q 033654            5 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV   84 (114)
Q Consensus         5 ~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V   84 (114)
                      |||||++|||+|||||+|||||+|+++||+|.||+||||||||+||||+||+|||||||||+++|+|+|++.+.++|++|
T Consensus         1 ~A~Kk~~GSt~NgrdS~~krLGvK~~~gq~V~~G~IivRQRGtk~hPG~nVg~GrD~TlfAl~~G~V~f~~~~~~~r~~v   80 (83)
T TIGR00062         1 MATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTKFHPGNNVGMGKDHTLFALSDGVVKFEKKGKRSRKFV   80 (83)
T ss_pred             CCcccccCcCCCCCCCCCccceeEecCCEEEcCCcEEEEcCCceECCCCcccccCCCeEEEecceEEEEEEcCCCCCEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999876689999


Q ss_pred             EeE
Q 033654           85 HVE   87 (114)
Q Consensus        85 ~V~   87 (114)
                      +|+
T Consensus        81 ~v~   83 (83)
T TIGR00062        81 SVV   83 (83)
T ss_pred             EEC
Confidence            984

Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.

>PF01016 Ribosomal_L27: Ribosomal L27 protein; InterPro: IPR001684 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.8e-47  Score=263.85  Aligned_cols=81  Identities=72%  Similarity=1.122  Sum_probs=73.6

Q ss_pred             eeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEE
Q 033654            6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH   85 (114)
Q Consensus         6 A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~   85 (114)
                      ||||++|||+|||||+|||||||+++||+|.||+||||||||+||||+||+|||||||||+++|+|+|+++. ++|+||+
T Consensus         1 A~KK~~GSt~NgrdS~~krlGvK~~~G~~V~~G~IivRQRgtk~hPG~NVg~GrD~TLfAl~~G~V~f~~~~-~~rk~v~   79 (81)
T PF01016_consen    1 AHKKGGGSTKNGRDSNPKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGRDHTLFALVDGRVKFTKEK-RNRKYVS   79 (81)
T ss_dssp             --SSSSSSSS--S-STTTTSEESSSTTCEESSTSEEEEBSSSSSEEBTTEEEETTSEEEESSSCEEEEEEET-TTEEEEE
T ss_pred             CCccccccccCCCCCCCcccEEEEeCCEEEcCCCEEEEeCCCcCcCCCCEEECCCCcEEEecCEEEEEEEeC-CCCEEEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999994 6899999


Q ss_pred             eE
Q 033654           86 VE   87 (114)
Q Consensus        86 V~   87 (114)
                      |+
T Consensus        80 V~   81 (81)
T PF01016_consen   80 VV   81 (81)
T ss_dssp             E-
T ss_pred             eC
Confidence            85

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L27 is a protein from the large (50S) subunit; it is essential for ribosome function, but its exact role is unclear. It belongs to a family of ribosomal proteins, examples of which are found in bacteria, chloroplasts of plants and red algae and the mitochondria of fungi (e.g. MRP7 from yeast mitochondria). The schematic relationship between these groups of proteins is shown below. Bacterial L27 Nxxxxxxxxx Algal L27 Nxxxxxxxxx Plant L27 tttttNxxxxxxxxxxxxx Yeast MRP7 tttNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 't': transit peptide. 'N': N-terminal of mature protein. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJQ_T 2ZJP_T 3PIP_T 3DLL_T 3PIO_T 1Y69_U 3CF5_T 2ZJR_T 1VSA_U 3PYT_W ....

>PRK05435 rpmA 50S ribosomal protein L27; Validated

Probab=100.00  E-value=7.1e-47  Score=262.57  Aligned_cols=82  Identities=65%  Similarity=0.997  Sum_probs=79.2

Q ss_pred             eeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEE
Q 033654            5 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV   84 (114)
Q Consensus         5 ~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V   84 (114)
                      |||||++|||+|||||+|||||+|+++||+|.||+||||||||+||||+||+|||||||||+++|+|+|++.. ++|++|
T Consensus         1 mA~KK~~GStkNgrdS~~krLGvK~~~g~~V~~G~IivRQRGtk~~PG~nVg~GrD~TlfA~~~G~V~f~~~~-~~~~~v   79 (82)
T PRK05435          1 MAHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFALVDGVVKFERKG-RNRKYV   79 (82)
T ss_pred             CCcccccCcCCCCCCCCcccceeEecCCEEEcCCcEEEEeCCCeECCCCCEeecCCceEEEecceEEEEEEcC-CCcEEE
Confidence            7999999999999999999999999999999999999999999999999999999999999999999999874 689999


Q ss_pred             EeE
Q 033654           85 HVE   87 (114)
Q Consensus        85 ~V~   87 (114)
                      +|+
T Consensus        80 ~v~   82 (82)
T PRK05435         80 SVV   82 (82)
T ss_pred             EEC
Confidence            984

>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C

Probab=96.03  E-value=0.014  Score=35.41  Aligned_cols=38  Identities=29%  Similarity=0.547  Sum_probs=32.1

Q ss_pred             EEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEE
Q 033654           34 RVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE   74 (114)
Q Consensus        34 ~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~   74 (114)
                      .|.||+.|...  ..|.||.|+.+ +|..|||.+-|.|+..
T Consensus         1 iV~PG~~l~~~--~e~~~G~GTY~-~~g~I~asv~G~v~~~   38 (39)
T PF14382_consen    1 IVVPGDRLGSS--EEYMPGHGTYV-RDGNIYASVAGTVKID   38 (39)
T ss_dssp             EE-TT-EEEET--TTSEESTTEEE-ETTEEEESSSEEEEEE
T ss_pred             CCCCCCEeecC--CCEecCCCEEE-eCCEEEEEeeEEEEEc
Confidence            48899999985  47999999999 8999999999999864

>PRK09521 exosome complex RNA-binding protein Csl4; Provisional

Probab=95.82  E-value=0.026  Score=42.93  Aligned_cols=54  Identities=22%  Similarity=0.395  Sum_probs=43.5

Q ss_pred             CCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCC
Q 033654           31 GGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG   91 (114)
Q Consensus        31 ~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~   91 (114)
                      +++.|.||+.|.-.  -.|.||.|+.. .|.+|||.+-|.+.+..+    ++.|+|.|...
T Consensus         4 ~~~~V~PGe~l~~~--~e~~~G~Gty~-~~~~i~as~~G~~~id~~----~~~Isv~P~~~   57 (189)
T PRK09521          4 QGDLVLPGDYLAVI--EEYLPGEGTYE-DNGEVYASVVGKVFIDDI----NRKISVIPFKK   57 (189)
T ss_pred             cCCEECCCCccccc--cceEcCCCEEe-eCCEEEEEeeEEEEEcCC----CCEEEEecCcC
Confidence            67899999999754  46999999987 678899999999999643    45577777554

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]

Probab=94.53  E-value=0.13  Score=40.82  Aligned_cols=61  Identities=21%  Similarity=0.338  Sum_probs=49.6

Q ss_pred             eCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCCCccccc
Q 033654           30 FGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPL   97 (114)
Q Consensus        30 ~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~~~p~   97 (114)
                      -+|.+|.||+.|..+  -.|.||+|+--= |+.|+|...|.+..+..    .+.++|.|......+|.
T Consensus         3 ~~g~~v~PGd~~a~~--EE~~~G~gt~~~-~g~i~Aa~~G~~~~d~~----n~~~~V~p~~~~~~~~K   63 (188)
T COG1096           3 KDGTFVLPGDVLAVI--EEFLPGEGTYEE-GGEIRAAATGVVRRDDK----NRVISVKPGKKTPPLPK   63 (188)
T ss_pred             ccCcEEcCcceeeee--eeeecCCCeEeE-CCEEEEeecccEEEccc----ceEEEeccCCCCCCCCC
Confidence            468899999999975  579999999876 99999999999998753    56688888776444443

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional

Probab=93.60  E-value=0.22  Score=39.39  Aligned_cols=53  Identities=25%  Similarity=0.396  Sum_probs=42.2

Q ss_pred             eeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCC
Q 033654           29 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG   91 (114)
Q Consensus        29 ~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~   91 (114)
                      ..++..|.||+.|.-   -.|.||.|+.. .|..|+|.+-|.+.+..      +.++|.|...
T Consensus         5 ~~~~~~V~PGd~l~~---~~~~~G~Gty~-~~g~i~As~~G~~~~~~------~~i~V~p~~~   57 (235)
T PRK04163          5 VEDRKIVVPGDLLAE---GEFKAGRGTYK-ENGKIYSTVVGLVDIKD------DKVRVIPLEG   57 (235)
T ss_pred             eeCCcEECCCCCcCc---CCeecCCceEE-eCCEEEEEEeEEEEEEC------CEEEEEECCC
Confidence            456789999999952   36999999987 78999999999999753      2577777554

>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function

Probab=89.75  E-value=0.97  Score=38.44  Aligned_cols=44  Identities=27%  Similarity=0.514  Sum_probs=35.8

Q ss_pred             eEEecCcEEEe----ccC------------------CeEeCCCCeeec-CC-CcEEEeeCeEEEEEEe
Q 033654           33 ERVIPGNIIVR----QRG------------------TRFHPGDYVGMG-KD-HTLYALKEGRVKFEKH   76 (114)
Q Consensus        33 q~V~~G~IlvR----QRG------------------tkfhPG~NVg~G-kD-~TLfAl~~G~V~f~~~   76 (114)
                      ..|.+|+.|++    +.|                  ..|.+|+||.+- .| -+|+|.++|++.|...
T Consensus       107 ~~V~~G~~la~~~p~~~G~~G~~V~G~~I~~~~~~~~~~~~g~~~~~~~~d~~~~~A~~~G~~~~~~~  174 (451)
T PF03961_consen  107 PSVKKGDVLAEKIPPTPGEPGRDVFGEPIPAKPGKDIPLKAGKNTEVSEEDGNKLYAAIDGRPVFENG  174 (451)
T ss_pred             eEECCCCEEEEEccCCCCCCCcccCCCCcCCCCCCccceeCCCCEEEEcCCCCEEEEecCCEEEEECC
Confidence            35888888887    334                  578899999999 66 5799999999999954

The proteins are in the region of 500-600 amino acid residues in length.

>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities

Probab=88.92  E-value=1.1  Score=29.57  Aligned_cols=41  Identities=24%  Similarity=0.383  Sum_probs=29.5

Q ss_pred             eEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEe
Q 033654           48 RFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP   88 (114)
Q Consensus        48 kfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p   88 (114)
                      +||.|--+.......++|+.+|+|.|.......-.+|.|.-
T Consensus         1 r~h~Gid~~~~~g~~V~A~~~G~V~~~~~~~~~g~~V~i~~   41 (96)
T PF01551_consen    1 RFHNGIDFAAPEGTPVYAPADGKVVFVGEDPGYGNYVIIQH   41 (96)
T ss_dssp             -EE-SEEEEETTT-EEEESSSEEEEEEEEETTTEEEEEEEE
T ss_pred             CCeeeEEeCCCCCCEEEeCccEEEEEEEeccCCccEEEEEe
Confidence            58888888888778899999999999876433466666654

The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....

>COG1315 Uncharacterized conserved protein [Function unknown]

Probab=80.10  E-value=1.9  Score=39.17  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=29.2

Q ss_pred             CeEeCCCCeeecCC-CcEEEeeCeEEEEEEecCCCceEEEeEeC
Q 033654           47 TRFHPGDYVGMGKD-HTLYALKEGRVKFEKHKLSGRKWVHVEPK   89 (114)
Q Consensus        47 tkfhPG~NVg~GkD-~TLfAl~~G~V~f~~~~~~~rk~V~V~p~   89 (114)
                      ..+++|.|+- -|| .||.|.++|..-+.+..      |+|+|.
T Consensus       219 ~~l~lG~nt~-~kd~~tlvA~~~G~~~~s~~t------I~V~~i  255 (543)
T COG1315         219 IKLNLGKNTA-FKDNNTLVAKRDGQPIVSKNT------ISVYPI  255 (543)
T ss_pred             eeeecCCCCc-cCCCCEEEEeeCCeEEecCCe------eEEEEE
Confidence            5899999999 666 89999999999887543      677664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
1vs6_W	85	Crystal Structure Of The Bacterial Ribosome From Es		6e-23
1p85_U	84	Real Space Refined Coordinates Of The 50s Subunit F		7e-23
1nkw_U	91	Crystal Structure Of The Large Ribosomal Subunit Fr		5e-22
3fik_W	79	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		9e-22
1pnu_U	86	Crystal Structure Of A Streptomycin Dependent Ribos		1e-21
1vsa_U	85	Crystal Structure Of A 70s Ribosome-Trna Complex Re		9e-21
3r8s_W	76	Structures Of The Bacterial Ribosome In Classical A		1e-20
3mrz_W	84	Recognition Of The Amber Stop Codon By Release Fact		1e-20
1v8q_A	85	Crystal Structure Of Ribosomal Protein L27 From The		2e-20
2v47_0	85	Structure Of The Ribosome Recycling Factor Bound To		3e-20
3r8t_W	75	Structures Of The Bacterial Ribosome In Classical A		4e-20
3bbo_X	198	Homology Model For The Spinach Chloroplast 50s Subu		4e-20
3tvh_3	77	Crystal Structure Analysis Of Ribosomal Decoding. T		4e-19
3pyo_W	76	Crystal Structure Of A Complex Containing Domain 3		8e-19
3tve_3	76	Crystal Structure Analysis Of Ribosomal Decoding. T		2e-18
2ftc_O	69	Structural Model For The Large Subunit Of The Mamma		2e-11

>pdb|1VS6|W Chain W, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 85

Iteration: 1
 Score =  102 bits (254), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 63/85 (74%)
Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+
Sbjct: 1  MAHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLF 60
Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPK 89
          A  +G+VKFE      RK++ +E +
Sbjct: 61 AKADGKVKFEVKGPKNRKFISIEAE 85

>pdb|1P85|U Chain U, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 84

Iteration: 1
 Score =  102 bits (253), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 63/84 (75%)
Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A
Sbjct: 1  AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 60
Query: 66 LKEGRVKFEKHKLSGRKWVHVEPK 89
            +G+VKFE      RK++ +E +
Sbjct: 61 KADGKVKFEVKGPKNRKFISIEAE 84

>pdb|1NKW|U Chain U, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 91

Iteration: 1
 Score = 99.4 bits (246), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 64/89 (71%), Gaps = 1/89 (1%)
Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GS+KNGRDS PK LGVKKFGGE V  GNI+VRQRGT+F  G  VGMG+DHTL+
Sbjct: 1  MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLF 60
Query: 65 ALKEGRVKFEKHKLSGRKWVHVEPKEGHV 93
          AL +G+V F  +K  G +++ +E  +  V
Sbjct: 61 ALSDGKVVFI-NKGKGARFISIEAAQTEV 88

>pdb|3FIK|W Chain W, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 79

Iteration: 1
 Score = 98.2 bits (243), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 46/78 (58%), Positives = 60/78 (76%)
Query: 12 GSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRV 71
          GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A  +G+V
Sbjct: 2  GSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKV 61
Query: 72 KFEKHKLSGRKWVHVEPK 89
          KFE      RK++ +E +
Sbjct: 62 KFEVKGPKNRKFISIEAE 79

>pdb|1PNU|U Chain U, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 86

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 63/85 (74%), Gaps = 1/85 (1%)
Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GS+KNGRDS PK LGVKKFGGE V  GNI+VRQRGT+F  G  VGMG+DHTL+A
Sbjct: 1  AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 60
Query: 66 LKEGRVKFEKHKLSGRKWVHVEPKE 90
          L +G+V F  +K  G +++ +E  +
Sbjct: 61 LSDGKVVFI-NKGKGARFISIEAAQ 84

>pdb|1VSA|U Chain U, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 85

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/84 (59%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GSTKNGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+
Sbjct: 1  MAHKKGLGSTKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLF 60
Query: 65 ALKEGRVKFEKHKLSGRKWVHVEP 88
          AL +G V+F+     GR +VHV P
Sbjct: 61 ALVDGVVEFQDRGRLGR-YVHVRP 83

>pdb|3R8S|W Chain W, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 76

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/76 (57%), Positives = 58/76 (76%)
Query: 14 TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73
          T+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A  +G+VKF
Sbjct: 1  TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKF 60
Query: 74 EKHKLSGRKWVHVEPK 89
          E      RK++ +E +
Sbjct: 61 EVKGPKNRKFISIEAE 76

>pdb|3MRZ|W Chain W, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 84

Iteration: 1
 Score = 94.7 bits (234), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/83 (60%), Positives = 61/83 (73%), Gaps = 1/83 (1%)
Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GSTKNGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+A
Sbjct: 1  AHKKGLGSTKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFA 60
Query: 66 LKEGRVKFEKHKLSGRKWVHVEP 88
          L +G V+F+     GR +VHV P
Sbjct: 61 LVDGVVEFQDRGRLGR-YVHVRP 82

>pdb|1V8Q|A Chain A, Crystal Structure Of Ribosomal Protein L27 From Thermus Thermophilus Hb8 Length = 85

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 61/84 (72%), Gaps = 1/84 (1%)
Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK  GST+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+
Sbjct: 1  MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLF 60
Query: 65 ALKEGRVKFEKHKLSGRKWVHVEP 88
          AL +G V+F+     GR +VHV P
Sbjct: 61 ALVDGVVEFQDRGRLGR-YVHVRP 83

>pdb|2V47|0 Chain 0, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 2 Of 4). This File Contains The 50s Subunit For Molecule 1. Length = 85

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/84 (57%), Positives = 60/84 (71%), Gaps = 1/84 (1%)
Query: 5  WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
           A KK   ST+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+
Sbjct: 1  MAHKKALASTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLF 60
Query: 65 ALKEGRVKFEKHKLSGRKWVHVEP 88
          AL +G V+F+     GR +VHV P
Sbjct: 61 ALVDGVVEFQDRGRLGR-YVHVRP 83

>pdb|3R8T|W Chain W, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 75

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 57/75 (76%)
Query: 15 KNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFE 74
          +NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A  +G+VKFE
Sbjct: 1  RNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFE 60
Query: 75 KHKLSGRKWVHVEPK 89
                RK++ +E +
Sbjct: 61 VKGPKNRKFISIEAE 75

>pdb|3BBO|X Chain X, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 198

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 61/85 (71%), Gaps = 1/85 (1%)
Query: 6   ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VG+GKDHT+++
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118
Query: 66  LKEGRVKFEKHKLSGRKWVHVEPKE 90
           L +G VKFEK     RK + V P+E
Sbjct: 119 LIDGLVKFEKFG-PDRKKISVYPRE 142

>pdb|3TVH|3 Chain 3, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The Second 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 77

Iteration: 1
 Score = 89.4 bits (220), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/76 (59%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 13 STKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVK 72
          ST+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+AL +G V+
Sbjct: 1  STRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVE 60
Query: 73 FEKHKLSGRKWVHVEP 88
          F+     GR +VHV P
Sbjct: 61 FQDRGRLGR-YVHVRP 75

>pdb|3PYO|W Chain W, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 76

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 14 TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73
          TKNGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+AL +G V+F
Sbjct: 1  TKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEF 60
Query: 74 EKHKLSGRKWVHVEP 88
          +     GR +VHV P
Sbjct: 61 QDRGRLGR-YVHVRP 74

>pdb|3TVE|3 Chain 3, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 76

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Query: 14 TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73
          T+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+AL +G V+F
Sbjct: 1  TRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEF 60
Query: 74 EKHKLSGRKWVHVEP 88
          +     GR +VHV P
Sbjct: 61 QDRGRLGR-YVHVRP 74

>pdb|2FTC|O Chain O, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 69

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)
Query: 6  ATKKTAGSTKN-GRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
          A+KK+ GS+KN G  S  +  G+KK  G  V  GNII  QR  R+HPG +VG+GK+  LY
Sbjct: 1  ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLY 60
Query: 65 ALKEGRVKF 73
          AL+EG V++
Sbjct: 61 ALEEGIVRY 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
2zjr_T	91	50S ribosomal protein L27; ribosome, large ribosom	9e-45
3bbo_X	198	Ribosomal protein L27; large ribosomal subunit, sp	9e-45
3v2d_0	85	50S ribosomal protein L27; ribosome associated inh	7e-43
3r8s_W	76	50S ribosomal protein L27; protein biosynthesis, R	3e-42
2ftc_O	69	L27MT, MRP-L27, mitochondrial 39S ribosomal protei	7e-38

>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ... Length = 91

 Score =  139 bits (352), Expect = 9e-45
 Identities = 51/88 (57%), Positives = 63/88 (71%), Gaps = 1/88 (1%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GS+KNGRDS PK LGVKKFGGE V  GNI+VRQRGT+F  G  VGMG+DHTL+A
Sbjct: 2  AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 61

Query: 66 LKEGRVKFEKHKLSGRKWVHVEPKEGHV 93
          L +G+V F   K  G +++ +E  +  V
Sbjct: 62 LSDGKVVFIN-KGKGARFISIEAAQTEV 88

>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 198

 Score =  142 bits (360), Expect = 9e-45
 Identities = 52/101 (51%), Positives = 65/101 (64%), Gaps = 1/101 (0%)

Query: 1   MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKD 60
           +    A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VG+GKD
Sbjct: 54  LTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKD 113

Query: 61  HTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHPLYANA 101
           HT+++L +G VKFEK     RK + V P+E    +P    A
Sbjct: 114 HTIFSLIDGLVKFEK-FGPDRKKISVYPREIVPENPNSYRA 153

>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ... Length = 85

 Score =  134 bits (339), Expect = 7e-43
 Identities = 47/83 (56%), Positives = 61/83 (73%), Gaps = 1/83 (1%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GST+NGRDS+ K LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+A
Sbjct: 2  AHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFA 61

Query: 66 LKEGRVKFEKHKLSGRKWVHVEP 88
          L +G V+F+  +    ++VHV P
Sbjct: 62 LVDGVVEFQD-RGRLGRYVHVRP 83

>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W 2qoz_W* ... Length = 76

 Score =  132 bits (334), Expect = 3e-42
 Identities = 44/76 (57%), Positives = 58/76 (76%)

Query: 14 TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF 73
          T+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A  +G+VKF
Sbjct: 1  TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKF 60

Query: 74 EKHKLSGRKWVHVEPK 89
          E      RK++ +E +
Sbjct: 61 EVKGPKNRKFISIEAE 76

>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O Length = 69

 Score =  121 bits (305), Expect = 7e-38
 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 1/69 (1%)

Query: 6  ATKKTAGSTKN-GRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLY 64
          A+KK+ GS+KN G  S  +  G+KK  G  V  GNII  QR  R+HPG +VG+GK+  LY
Sbjct: 1  ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLY 60

Query: 65 ALKEGRVKF 73
          AL+EG V++
Sbjct: 61 ALEEGIVRY 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2zjr_T	91	50S ribosomal protein L27; ribosome, large ribosom	100.0
3v2d_0	85	50S ribosomal protein L27; ribosome associated inh	100.0
3bbo_X	198	Ribosomal protein L27; large ribosomal subunit, sp	100.0
3r8s_W	76	50S ribosomal protein L27; protein biosynthesis, R	100.0
2ftc_O	69	L27MT, MRP-L27, mitochondrial 39S ribosomal protei	100.0
2xha_A	193	NUSG, transcription antitermination protein NUSG;	95.78
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	95.5
3m7n_A	179	Putative uncharacterized protein AF_0206; exosome,	94.1
2je6_I	251	RRP4, exosome complex RNA-binding protein 1; nucle	92.77
2nn6_I	209	3'-5' exoribonuclease CSL4 homolog; RNA, exosome,	89.4
2ba0_A	229	Archeal exosome RNA binding protein RRP4; RNAse PH	87.63
2d5d_A	74	Methylmalonyl-COA decarboxylase gamma chain; bioti	82.44
1dcz_A	77	Transcarboxylase 1.3S subunit; antiparallel beta s	81.62
2nn6_H	308	Exosome complex exonuclease RRP4; RNA, exosome, PM	81.12

>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...

Probab=100.00  E-value=1.7e-50  Score=284.17  Aligned_cols=87  Identities=56%  Similarity=0.940  Sum_probs=81.9

Q ss_pred             eeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEE
Q 033654            5 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV   84 (114)
Q Consensus         5 ~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V   84 (114)
                      |||||++|||+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++.. ++|+||
T Consensus         1 mAhKK~~GSt~NGRdS~~krLGvK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~-~~r~~V   79 (91)
T 2zjr_T            1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFI   79 (91)
T ss_dssp             -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEET-TTEEEE
T ss_pred             CCcccCCCCCCCCCCCCCceeeEEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEeccceEEEEEEcC-CCcEEE
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999775 799999


Q ss_pred             EeEeCCCC
Q 033654           85 HVEPKEGH   92 (114)
Q Consensus        85 ~V~p~~~~   92 (114)
                      +|+|++.+
T Consensus        80 ~V~p~~~~   87 (91)
T 2zjr_T           80 SIEAAQTE   87 (91)
T ss_dssp             EECCCC--
T ss_pred             EEEeChhh
Confidence            99997654

>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...

Probab=100.00  E-value=6.4e-50  Score=278.32  Aligned_cols=84  Identities=56%  Similarity=0.915  Sum_probs=73.9

Q ss_pred             eeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEE
Q 033654            5 WATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV   84 (114)
Q Consensus         5 ~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V   84 (114)
                      |||||++|||+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++.. ++|+||
T Consensus         1 MAhKK~gGStkNGrdS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~-~~r~~V   79 (85)
T 3v2d_0            1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYV   79 (85)
T ss_dssp             --------CCSCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEESSSEEEEEEECG-GGCEEE
T ss_pred             CCcccCCCCCCCCCCCCCccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEecCEEEEEEEcC-CCCEEE
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999874 689999


Q ss_pred             EeEeC
Q 033654           85 HVEPK   89 (114)
Q Consensus        85 ~V~p~   89 (114)
                      +|+|+
T Consensus        80 sV~p~   84 (85)
T 3v2d_0           80 HVRPL   84 (85)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99996

>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=2.9e-49  Score=307.83  Aligned_cols=99  Identities=52%  Similarity=0.741  Sum_probs=83.7

Q ss_pred             CceEeeeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCC
Q 033654            1 MFRRWATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSG   80 (114)
Q Consensus         1 ~~~r~A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~   80 (114)
                      +.+||||||+||||+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++.. ++
T Consensus        54 l~VRmAhKKggGSTkNGRDS~~KRLGVK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl~~G~VkF~~~~-~~  132 (198)
T 3bbo_X           54 LTIESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFG-PD  132 (198)
T ss_dssp             -----CCCCSSCCCCCCCCCCCCCCSCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCCSCCCCCSSSSC-CC
T ss_pred             hheeeeeccCCCCCCCCCCCCCceeeEEecCCeEeccCcEEEeccCceEcCCCCeeecCCCceEeccceEEEEEEcC-CC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999653 78


Q ss_pred             ceEEEeEeCCCCcccccccc
Q 033654           81 RKWVHVEPKEGHVLHPLYAN  100 (114)
Q Consensus        81 rk~V~V~p~~~~~~~p~~~~  100 (114)
                      |+||+|+|++.+.+||.+.+
T Consensus       133 Rk~VsV~p~~~~~~~p~~~r  152 (198)
T 3bbo_X          133 RKKISVYPREIVPENPNSYR  152 (198)
T ss_dssp             CSCCCSSCCCCC--------
T ss_pred             cEEEEEEeCCccccCchhhh
Confidence            99999999999999998544

>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...

Probab=100.00  E-value=8e-45  Score=248.35  Aligned_cols=76  Identities=58%  Similarity=1.015  Sum_probs=73.3

Q ss_pred             CCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeC
Q 033654           14 TKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPK   89 (114)
Q Consensus        14 tkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~   89 (114)
                      |+|||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|++...++|+||+|+|+
T Consensus         1 t~NGRDS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~~~~r~~VsV~p~   76 (76)
T 3r8s_W            1 TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFISIEAE   76 (76)
T ss_dssp             CCCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEESSSEEEEEEEETTTTEEEEEEECC
T ss_pred             CCCCCCCCcccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEccCEEEEEEEeCCCCCEEEEEEeC
Confidence            7999999999999999999999999999999999999999999999999999999999999876679999999984

>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O

Probab=100.00  E-value=1.8e-44  Score=242.94  Aligned_cols=68  Identities=51%  Similarity=0.841  Sum_probs=67.4

Q ss_pred             eeecCCccCCC-CCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033654            6 ATKKTAGSTKN-GRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF   73 (114)
Q Consensus         6 A~KK~~GStkN-grdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f   73 (114)
                      ||||++|||+| ||||++||||+|+++||+|.||+||||||||+||||+||||||||||||+++|+|+|
T Consensus         1 A~KK~~GSt~N~grdS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl~~G~V~f   69 (69)
T 2ftc_O            1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYALEEGIVRY   69 (69)
T ss_pred             CcccccCcccCCCCCCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence            89999999999 999999999999999999999999999999999999999999999999999999997

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=95.78  E-value=0.0052  Score=47.48  Aligned_cols=52  Identities=21%  Similarity=0.181  Sum_probs=37.3

Q ss_pred             eeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCCCc---ccccccc
Q 033654           29 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHV---LHPLYAN  100 (114)
Q Consensus        29 ~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~---~~p~~~~  100 (114)
                      .-+|+.|.+|+||+                ||+.++|-++|+|.|.+    .++.|.|.|..++.   +-|.+..
T Consensus        85 V~dG~~V~~GdvLA----------------Kd~AIiaEIdG~V~fgk----gkrrivI~~~~Ge~~eylIPk~k~  139 (193)
T 2xha_A           85 LRVGTKVKQGLPLS----------------KNEEYICELDGKIVEIE----RMKKVVVQTPDGEQDVYYIPLDVF  139 (193)
T ss_dssp             CCTTCEECTTSBSS----------------TTSCSBCCSSEEEEEEE----EEEEEEEECTTSCEEEEEEEGGGC
T ss_pred             cCCCCEEcCCCEEe----------------cCCeEEEccceEEEECC----CeEEEEEECCCCCEEEEEeCCCCc
Confidence            34566666666666                99999999999999987    45567788866543   4454443

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=95.50  E-value=0.01  Score=48.84  Aligned_cols=50  Identities=22%  Similarity=0.219  Sum_probs=38.0

Q ss_pred             eeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCCCc---ccccc
Q 033654           29 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHV---LHPLY   98 (114)
Q Consensus        29 ~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~---~~p~~   98 (114)
                      .-+|+.|.+|+||+                ||+.++|-+||+|.|.++    ++.|.|.|..++.   +-|.+
T Consensus       125 v~~g~~v~~G~vla----------------k~~aiiaeidG~V~fg~~----kr~i~i~~~~g~~~eylip~~  177 (352)
T 2xhc_A          125 LRVGTKVKQGLPLS----------------KNEEYICELDGKIVEIER----MKKVVVQTPDGEQDVYYIPLD  177 (352)
T ss_dssp             CCTTCEECTTCBSB----------------SSSSCBCCSCEEEEEEEE----EEEEEEECTTSCEEEEEEEGG
T ss_pred             cCCCCEEccCcEEe----------------cCceEEeccceEEEECCc----EEEEEEECCCCCEEEEEEcCC
Confidence            44677777777777                999999999999999985    5567778876643   55555

>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A

Probab=94.10  E-value=0.098  Score=38.52  Aligned_cols=55  Identities=20%  Similarity=0.209  Sum_probs=41.6

Q ss_pred             eEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCCCcccc
Q 033654           33 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGHVLHP   96 (114)
Q Consensus        33 q~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~~~~p   96 (114)
                      +.|.||+.|.-.  ..|.||.++..- |..|+|..-|.|.+.      .+.|+|.|.......|
T Consensus         2 ~iV~PGd~l~~~--~~~~~G~Gty~~-~~~i~as~~G~v~~~------~~~v~V~~~~~~~y~p   56 (179)
T 3m7n_A            2 RFVMPGDRIGSA--EEYVKGEGVYEE-GGELFAAVAGKLIIK------DRVAKVESISPIPEIV   56 (179)
T ss_dssp             CEECTTCEEEET--TTSEECTTEEEE-TTEEEESSSEEEEEE------TTEEEEEESSCCCCCC
T ss_pred             eEEcCCCCCCCC--CCEeccCCEEEe-CCEEEEEEEEEEEEe------CCEEEEEECCCCcccC
Confidence            478999999754  358999999884 889999999999982      2367888864433333

>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C

Probab=92.77  E-value=0.2  Score=39.05  Aligned_cols=53  Identities=21%  Similarity=0.307  Sum_probs=41.9

Q ss_pred             eCCeEEecCcEEEeccCCeEeCCC--CeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCCC
Q 033654           30 FGGERVIPGNIIVRQRGTRFHPGD--YVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEGH   92 (114)
Q Consensus        30 ~~Gq~V~~G~IlvRQRGtkfhPG~--NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~~   92 (114)
                      .+++.|.||+.|...   .|.||.  ++.. .|..|+|.+-|.|.+..      +.|+|.|....
T Consensus        14 ~~~~iV~PGd~l~~~---~~~~G~~~Gty~-~~g~i~as~~G~v~~~~------~~v~V~p~~~~   68 (251)
T 2je6_I           14 QPRSIVVPGELLAEG---EFQIPWSPYILK-INSKYYSTVVGLFDVKD------TQFEVIPLEGS   68 (251)
T ss_dssp             CSSCEECTTCEEEEE---CCCCCCCTTEEE-ETTEEEECSSEEEEEET------TEEEEEESCCS
T ss_pred             CCCcEEcCCCCCccC---CeeeCCCCCEEE-ECCEEEEEEEEEEEEeC------CEEEEEECCCc
Confidence            368899999999853   489999  9987 57789999999998652      25888887653

>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2

Probab=89.40  E-value=0.075  Score=40.33  Aligned_cols=58  Identities=14%  Similarity=0.076  Sum_probs=39.1

Q ss_pred             eeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCC
Q 033654           29 KFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE   90 (114)
Q Consensus        29 ~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~   90 (114)
                      ..+++.|.||+.|...  ..|.||.|+.. .|..|||.+-|.|.+... ....+.|+|.|..
T Consensus        16 ~~~~~iV~PGd~l~~~--~~~~~G~Gty~-~~g~I~Asv~G~v~~~~~-~~~~~vi~V~p~~   73 (209)
T 2nn6_I           16 APPVRYCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSE-NGALPVVSVVRET   73 (209)
T ss_dssp             ----CCCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBC-TTSSBC-CBCCSC
T ss_pred             cCCCcEEcCCCCCCCC--CCeeecCCEEE-ECCEEEEEEEEEEEEecc-CCcccEEEEecCC
Confidence            3457889999999854  35899999986 467899999999886532 1234556666653

>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1

Probab=87.63  E-value=0.44  Score=36.50  Aligned_cols=48  Identities=21%  Similarity=0.268  Sum_probs=36.9

Q ss_pred             eEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCC
Q 033654           33 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE   90 (114)
Q Consensus        33 q~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~   90 (114)
                      +.|.||+.|.-   ..|.||.|+.. .|..|+|.+-|.|.+..      +.|+|.|..
T Consensus         3 ~iV~PGd~l~~---~~~~~G~Gty~-~~g~i~as~~G~v~~~~------~~v~V~p~~   50 (229)
T 2ba0_A            3 KIVLPGDLLST---NPRAAGYGTYV-EGGKVYAKIIGLFDQTE------THVRVIPLK   50 (229)
T ss_dssp             CEECTTCEEES---CTTSBCTTEEE-ETTEEEECSSEEEEECS------SCEEEEECS
T ss_pred             CEEcCCCCccc---CCeEecCCEEE-eCCEEEEEEEEEEEEeC------CEEEEEeCC
Confidence            67999999983   34899999987 67889999999988542      136777644

>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A

Probab=82.44  E-value=0.68  Score=27.81  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=28.8

Q ss_pred             eeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033654           27 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF   73 (114)
Q Consensus        27 vK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f   73 (114)
                      +..-.|+.|.+|++|++---.+.          ..+|.|+.+|+|.-
T Consensus        19 ~~v~~G~~V~~G~~l~~i~~~~~----------~~~i~ap~~G~v~~   55 (74)
T 2d5d_A           19 VLVRVGDRVRVGQGLLVLEAMKM----------ENEIPSPRDGVVKR   55 (74)
T ss_dssp             ECCCTTCEECTTCEEEEEEETTE----------EEEEECSSSEEEEE
T ss_pred             EEcCCCCEeCCCCEEEEEecccc----------eEEEeCCCCEEEEE
Confidence            45568999999999998654433          35899999999863

>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A

Probab=81.62  E-value=0.75  Score=28.09  Aligned_cols=37  Identities=16%  Similarity=0.323  Sum_probs=29.0

Q ss_pred             eeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEE
Q 033654           27 VKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKF   73 (114)
Q Consensus        27 vK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f   73 (114)
                      +....|+.|.+|++|++-.-.++          ..+|.|+.+|+|.-
T Consensus        22 ~~v~~G~~V~~G~~L~~l~~~~~----------~~~i~Ap~~G~v~~   58 (77)
T 1dcz_A           22 ILVKEGDTVKAGQTVLVLEAMKM----------ETEINAPTDGKVEK   58 (77)
T ss_dssp             ECCCTTCEECTTSEEEEEEETTE----------EEEEECSSSEEEEE
T ss_pred             EEcCCcCEEcCCCEEEEEEccce----------eEEEECCCCEEEEE
Confidence            45568999999999998654443          46899999999874

>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1

Probab=81.12  E-value=1.8  Score=34.94  Aligned_cols=52  Identities=29%  Similarity=0.364  Sum_probs=37.5

Q ss_pred             eCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCC
Q 033654           30 FGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE   90 (114)
Q Consensus        30 ~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~   90 (114)
                      .+++.|.||+.|...  ..|.||.|+..- |..|+|.+-|.|...      .+.|+|.|..
T Consensus        37 ~~~~iVlPGd~L~~~--~~~~~G~Gty~~-~g~I~Asv~G~v~~~------~~~vsV~p~~   88 (308)
T 2nn6_H           37 TKKHLVVPGDTITTD--TGFMRGHGTYMG-EEKLIASVAGSVERV------NKLICVKALK   88 (308)
T ss_dssp             ---CBCCTTCBCCCC--TTCCBCTTEEEC-SSSEEECSSEEEEEE------TTEEEEEESS
T ss_pred             CCCcEEeCCCCCCCC--CCEeecCCeEEE-CCEEEEEEEEEEEec------CCEEEEeeCC
Confidence            356789999999853  358999999864 667999999998853      1357777644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d2gycu1	84	b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherich	1e-38
d2zjrt1	84	b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococc	1e-37
d1v8qa_	66	b.84.4.1 (A:) Ribosomal protein L27 {Thermus therm	3e-30

>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]} Length = 84

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Escherichia coli [TaxId: 562]

 Score =  122 bits (308), Expect = 1e-38
 Identities = 49/83 (59%), Positives = 62/83 (74%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GST+NGRDS+ K LGVK+FGGE V+ G+IIVRQRGT+FH G  VG G+DHTL+A
Sbjct: 1  AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFA 60

Query: 66 LKEGRVKFEKHKLSGRKWVHVEP 88
            +G+VKFE      RK++ +E 
Sbjct: 61 KADGKVKFEVKGPKNRKFISIEA 83

>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]} Length = 84

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  119 bits (301), Expect = 1e-37
 Identities = 50/85 (58%), Positives = 62/85 (72%), Gaps = 1/85 (1%)

Query: 6  ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYA 65
          A KK  GS+KNGRDS PK LGVKKFGGE V  GNI+VRQRGT+F  G  VGMG+DHTL+A
Sbjct: 1  AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFA 60

Query: 66 LKEGRVKFEKHKLSGRKWVHVEPKE 90
          L +G+V F   K  G +++ +E  +
Sbjct: 61 LSDGKVVFIN-KGKGARFISIEAAQ 84

>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]} Length = 66

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Thermus thermophilus [TaxId: 274]

 Score =  100 bits (252), Expect = 3e-30
 Identities = 35/64 (54%), Positives = 47/64 (73%), Gaps = 1/64 (1%)

Query: 25 LGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWV 84
          LGVK++ G+ V  GNI+VRQRGTRF PG  VGMG+D TL+AL +G V+F+  +    ++V
Sbjct: 2  LGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQD-RGRLGRYV 60

Query: 85 HVEP 88
          HV P
Sbjct: 61 HVRP 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d2zjrt1	84	Ribosomal protein L27 {Deinococcus radiodurans [Ta	100.0
d2gycu1	84	Ribosomal protein L27 {Escherichia coli [TaxId: 56	100.0
d1v8qa_	66	Ribosomal protein L27 {Thermus thermophilus [TaxId	100.0
d2ba0a2	51	Exosome complex RNA-binding protein 1, ECR1 {Archa	96.17
d2nn6h2	48	Ribosomal RNA-processing protein 4, RRP4 {Human (H	92.08
d2je6i2	59	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	91.5
d2nn6i2	55	Exosome component 1, EXOSC1 {Human (Homo sapiens)	89.43

>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.5e-48  Score=268.11  Aligned_cols=84  Identities=58%  Similarity=0.980  Sum_probs=81.4

Q ss_pred             eeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEE
Q 033654            6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH   85 (114)
Q Consensus         6 A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~   85 (114)
                      ||||+||||+|||||+|||||||+|+||+|.||+||||||||+||||+||+|||||||||+++|+|+|++.. ++|+||+
T Consensus         1 A~KK~~GSt~NgrdS~~krlGvK~~~Gq~V~~G~IivRQRGtk~hpG~nVg~GkD~TLfA~~~G~V~F~k~~-~~rk~V~   79 (84)
T d2zjrt1           1 AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFALSDGKVVFINKG-KGARFIS   79 (84)
T ss_dssp             CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEESSCEEEEEEEET-TTEEEEE
T ss_pred             CCccccCCCCCCCCCCCccceEEECCCEEEeCCcEEEEecCceEcCCCCccccCCCcEEEeeceEEEEEEcC-CCCEEEE
Confidence            899999999999999999999999999999999999999999999999999999999999999999999874 6899999


Q ss_pred             eEeCC
Q 033654           86 VEPKE   90 (114)
Q Consensus        86 V~p~~   90 (114)
                      |+|.+
T Consensus        80 V~p~e   84 (84)
T d2zjrt1          80 IEAAQ   84 (84)
T ss_dssp             ECCCC
T ss_pred             EEeCC
Confidence            99975

>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.8e-49  Score=272.13  Aligned_cols=84  Identities=58%  Similarity=0.991  Sum_probs=80.5

Q ss_pred             eeecCCccCCCCCCCCCceeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEE
Q 033654            6 ATKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVH   85 (114)
Q Consensus         6 A~KK~~GStkNgrdS~~KrLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~   85 (114)
                      ||||++|||+|||||+|||||||+|+||+|.||+||||||||+||||+||||||||||||+++|+|+|++...++|+||+
T Consensus         1 A~KK~~GSs~NgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~hPG~nVg~GkD~TLfAl~~G~V~F~~~~~~~r~~V~   80 (84)
T d2gycu1           1 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAKADGKVKFEVKGPKNRKFIS   80 (84)
T ss_dssp             CCCCSCCSCCCCCCCCCBCCCCSSSCCCSSCCSBSSCCCCCCSSCCCCCSSSCCCCCCCCCSCCCCSSSSSSCSCCCCCC
T ss_pred             CCccccccCCCCCCCCCccceeEEcCCEEEcCCcEEEEeccceEcCCCCeeecCCCeEEEeccEEEEEEEcCCCCCEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999876556899999


Q ss_pred             eEeC
Q 033654           86 VEPK   89 (114)
Q Consensus        86 V~p~   89 (114)
                      |+++
T Consensus        81 V~~e   84 (84)
T d2gycu1          81 IEAE   84 (84)
T ss_dssp             SSCC
T ss_pred             EEeC
Confidence            9875

>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-37  Score=205.71  Aligned_cols=66  Identities=53%  Similarity=0.931  Sum_probs=63.0

Q ss_pred             eeceeeeCCeEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCC
Q 033654           24 NLGVKKFGGERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE   90 (114)
Q Consensus        24 rLGvK~~~Gq~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~   90 (114)
                      |||+|+++||+|.||+||||||||+||||+||+|||||||||+++|+|+|++.. ++++||||+|.+
T Consensus         1 RLGvK~~~Gq~V~~G~IivRQRGtk~~pG~nVg~GkD~TLfAl~~G~V~F~~~~-~~~~~VsV~P~a   66 (66)
T d1v8qa_           1 RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG-RLGRYVHVRPLA   66 (66)
T ss_dssp             CCEECSCTTCEECTTCEEEECSSCSSEECTTEEECTTCCEEESSSEEEEEEECG-GGCEEEEEEECC
T ss_pred             CCccEEeCCEEEeCCeEEEEeccCeEeCCCCeeecCCCcEEEeeeeEEEEEEeC-CCCeEEEEEECC
Confidence            799999999999999999999999999999999999999999999999999875 589999999974

>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Exosome complex RNA-binding protein 1, ECR1
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.17  E-value=0.003  Score=37.90  Aligned_cols=49  Identities=22%  Similarity=0.302  Sum_probs=39.7

Q ss_pred             eEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCCC
Q 033654           33 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKEG   91 (114)
Q Consensus        33 q~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~~   91 (114)
                      +.|.||++|.-  + .|.||.|+.+ .|..|+|.+-|.|...      -+.|+|.|...
T Consensus         2 ~iV~PGe~i~~--~-~~~~G~Gty~-~~~~i~ss~~G~v~~~------n~~i~V~PL~g   50 (51)
T d2ba0a2           2 KIVLPGDLLST--N-PRAAGYGTYV-EGGKVYAKIIGLFDQT------ETHVRVIPLKG   50 (51)
T ss_dssp             CEECTTCEEES--C-TTSBCTTEEE-ETTEEEECSSEEEEEC------SSCEEEEECSS
T ss_pred             CEEcCCcEeec--C-CeeCCCCcEE-ECCEEEEEEEEEEEEE------CCEEEEEeCcc
Confidence            57999999975  4 4999999999 5789999999999754      23588888653

>d2nn6h2 b.84.4.2 (H:25-72) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Ribosomal RNA-processing protein 4, RRP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.08  E-value=0.064  Score=31.94  Aligned_cols=47  Identities=32%  Similarity=0.475  Sum_probs=37.6

Q ss_pred             eEEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEe
Q 033654           33 ERVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEP   88 (114)
Q Consensus        33 q~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p   88 (114)
                      +.|.||+.|-.+-+  |.+|.+..+- |..|+|.+.|.|.-.      -|.|+|.|
T Consensus         1 ~iv~PGe~It~~~~--~mrGHGTy~~-~~~i~aSv~G~verv------NKLvsV~p   47 (48)
T d2nn6h2           1 HLVVPGDTITTDTG--FMRGHGTYMG-EEKLIASVAGSVERV------NKLICVKA   47 (48)
T ss_dssp             CBCCTTCBCCCCTT--CCBCTTEEEC-SSSEEECSSEEEEEE------TTEEEEEE
T ss_pred             CEecCCcEeecCCC--eEcccccEec-CCEEEEEEeeeEEEe------ccEEEEEc
Confidence            36889999987755  8999999994 789999999999433      34577776

>d2je6i2 b.84.4.2 (I:7-65) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Exosome complex RNA-binding protein 1, ECR1
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.50  E-value=0.13  Score=31.24  Aligned_cols=53  Identities=21%  Similarity=0.298  Sum_probs=38.5

Q ss_pred             eeCCeEEecCcEEEeccCCeEeC-CCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeEeCC
Q 033654           29 KFGGERVIPGNIIVRQRGTRFHP-GDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVEPKE   90 (114)
Q Consensus        29 ~~~Gq~V~~G~IlvRQRGtkfhP-G~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~p~~   90 (114)
                      ..+-+.|.||++|..  |..|.| |.++.. .+..|+|.+-|.|.+..+      .|+|.|.+
T Consensus         5 v~~r~iV~PGdvi~~--~~~~~~~g~~ty~-~~~ki~asv~G~v~~~nk------li~ViPL~   58 (59)
T d2je6i2           5 LQPRSIVVPGELLAE--GEFQIPWSPYILK-INSKYYSTVVGLFDVKDT------QFEVIPLE   58 (59)
T ss_dssp             CCSSCEECTTCEEEE--ECCCCCCCTTEEE-ETTEEEECSSEEEEEETT------EEEEEESC
T ss_pred             EcCCeEECCCcEeee--CCccccCCCEEEe-cCCEEEEEEEEEEEEECC------EEEEEECC
Confidence            456789999999985  455554 554431 347899999999998732      58888865

>d2nn6i2 b.84.4.2 (I:6-60) Exosome component 1, EXOSC1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Exosome component 1, EXOSC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.43  E-value=0.028  Score=34.20  Aligned_cols=50  Identities=16%  Similarity=0.170  Sum_probs=38.1

Q ss_pred             EEecCcEEEeccCCeEeCCCCeeecCCCcEEEeeCeEEEEEEecCCCceEEEeE
Q 033654           34 RVIPGNIIVRQRGTRFHPGDYVGMGKDHTLYALKEGRVKFEKHKLSGRKWVHVE   87 (114)
Q Consensus        34 ~V~~G~IlvRQRGtkfhPG~NVg~GkD~TLfAl~~G~V~f~~~~~~~rk~V~V~   87 (114)
                      |+.||+.|..-  -.|-||.|+.. ++..|||..-|.|.+..+. +....|+|.
T Consensus         2 ~~lPGe~L~~~--eey~~G~gTy~-~~g~I~as~~G~v~id~~~-~~isVisV~   51 (55)
T d2nn6i2           2 YCIPGERLCNL--EEGSPGSGTYT-RHGYIFSSLAGCLMKSSEN-GALPVVSVV   51 (55)
T ss_dssp             CCCTTCEEEET--TTCCCSSSCEE-ETTEEECCSCSCBCCCBCT-TSSBC-CBC
T ss_pred             cccCCcEEeeh--heecCCCCeEE-cCCEEEEEeeEEEEEecCC-CEeeEEEEE
Confidence            67899999886  46889999987 4578999999999987542 345555554