Query 033656
Match_columns 114
No_of_seqs 126 out of 195
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 04:47:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033656.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033656hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02704 GASA: Gibberellin reg 100.0 6.2E-37 1.3E-41 203.2 5.1 60 55-114 1-60 (60)
2 PF03058 Sar8_2: Sar8.2 family 79.1 5.4 0.00012 28.9 4.8 21 3-23 7-28 (93)
3 PF07172 GRP: Glycine rich pro 70.3 8.6 0.00019 27.2 4.0 14 5-18 4-17 (95)
4 PF10731 Anophelin: Thrombin i 67.1 12 0.00026 25.6 3.9 34 5-38 4-37 (65)
5 PF09257 BCMA-Tall_bind: BCMA, 60.1 7 0.00015 24.3 1.7 21 59-79 16-36 (39)
6 PF11912 DUF3430: Protein of u 57.7 9.9 0.00022 28.2 2.5 14 1-14 1-14 (212)
7 TIGR02209 ftsL_broad cell divi 52.3 29 0.00063 22.5 3.8 18 1-18 1-18 (85)
8 PHA02973 hypothetical protein; 51.5 16 0.00035 26.9 2.7 18 1-18 1-18 (102)
9 PF02950 Conotoxin: Conotoxin; 42.2 8.4 0.00018 24.6 0.0 15 1-15 1-15 (75)
10 PF07127 Nodulin_late: Late no 39.1 32 0.0007 21.4 2.3 17 2-18 3-19 (54)
11 PF12729 4HB_MCP_1: Four helix 35.2 68 0.0015 21.5 3.6 9 2-10 7-15 (181)
12 PLN03207 stomagen; Provisional 34.7 52 0.0011 24.6 3.1 7 60-66 84-90 (113)
13 PF06589 CRA: Circumsporozoite 34.1 32 0.00069 26.9 2.1 14 1-14 1-14 (157)
14 PRK10936 TMAO reductase system 33.7 60 0.0013 25.7 3.6 18 1-18 1-18 (343)
15 PF10717 ODV-E18: Occlusion-de 32.4 51 0.0011 23.6 2.7 7 7-13 34-40 (85)
16 PF15240 Pro-rich: Proline-ric 31.1 45 0.00098 26.5 2.5 16 3-18 2-17 (179)
17 PHA03066 Hypothetical protein; 29.5 56 0.0012 24.3 2.6 15 4-18 6-20 (110)
18 TIGR00810 secG protein translo 29.1 83 0.0018 20.7 3.2 29 7-36 4-32 (73)
19 COG3462 Predicted membrane pro 29.1 48 0.001 25.0 2.2 26 3-28 55-80 (117)
20 PHA02691 hypothetical protein; 28.6 53 0.0011 24.5 2.3 14 5-18 7-20 (110)
21 PF09451 ATG27: Autophagy-rela 28.5 59 0.0013 26.0 2.8 18 5-22 205-222 (268)
22 PF07699 GCC2_GCC3: GCC2 and G 27.8 77 0.0017 18.9 2.6 28 83-110 10-41 (48)
23 COG4594 FecB ABC-type Fe3+-cit 25.8 73 0.0016 27.4 3.0 27 2-28 2-28 (310)
24 PF15079 DUF4546: Domain of un 24.3 25 0.00055 28.5 0.0 21 72-92 168-189 (205)
25 PTZ00264 circumsporozoite-rela 24.1 62 0.0013 25.1 2.1 14 1-14 1-14 (148)
26 PF00322 Endothelin: Endotheli 23.3 47 0.001 19.8 1.0 16 63-78 5-21 (31)
27 PF12955 DUF3844: Domain of un 23.2 1.9E+02 0.0041 21.1 4.4 16 22-37 86-101 (103)
28 PF08194 DIM: DIM protein; In 22.9 67 0.0015 19.6 1.7 6 1-6 1-6 (36)
29 PRK09039 hypothetical protein; 21.9 84 0.0018 26.4 2.6 15 4-18 29-43 (343)
30 PF08139 LPAM_1: Prokaryotic m 21.6 69 0.0015 18.1 1.4 12 2-13 8-19 (25)
31 PRK06870 secG preprotein trans 21.1 1.3E+02 0.0027 19.9 2.9 28 7-35 5-32 (76)
32 PRK14762 membrane protein; Pro 20.9 1.8E+02 0.004 16.8 3.1 21 1-21 1-21 (27)
33 PRK13681 hypothetical protein; 20.8 1.2E+02 0.0026 18.5 2.4 17 1-17 1-17 (35)
No 1
>PF02704 GASA: Gibberellin regulated protein; InterPro: IPR003854 This is the GASA gibberellin regulated cysteine rich protein family. The expression of these proteins is up-regulated by the plant hormone gibberellin, most of these proteins have some role in plant development. There are 12 cysteine residues conserved within the alignment giving the potential for these proteins to posses 6 disulphide bonds.
Probab=100.00 E-value=6.2e-37 Score=203.18 Aligned_cols=60 Identities=62% Similarity=1.528 Sum_probs=59.4
Q ss_pred CchHHhhHHhhcCcchhHHHHHHHhhcCcccccCCCCCCCCCCCCccccccccCCCCCCC
Q 033656 55 NCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 114 (114)
Q Consensus 55 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~kC~CVP~GTyGnk~~CPCY~~~~t~~g~pKCP 114 (114)
||+++|++||++++++++||++||+||++|+|||||||||+|+||||+||+||+|+||||
T Consensus 1 ~C~~~C~~RCs~~~~~~~C~~~C~~CC~~C~CVP~GT~gn~~~CpCY~~m~t~~g~pKCP 60 (60)
T PF02704_consen 1 DCGGACSVRCSKASRKKRCMRACGTCCAKCKCVPPGTYGNKEECPCYRDMKTHGGKPKCP 60 (60)
T ss_pred CcchHHHHHHhccCCchHHHHHHHHHhccCcccCCCCCCCCccCCChhhhhccCCCCCCc
Confidence 799999999999999999999999999999999999999999999999999999999999
No 2
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=79.12 E-value=5.4 Score=28.95 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=10.1
Q ss_pred hHHHHHHH-HHHHHHHHHHHHH
Q 033656 3 LFAVFVLV-ILFLQALAVVEAS 23 (114)
Q Consensus 3 l~~~f~i~-~l~l~~~~~~~~s 23 (114)
+|+.|++. +|++....++.+.
T Consensus 7 lfl~lSLailLmIISSqv~ARE 28 (93)
T PF03058_consen 7 LFLCLSLAILLMIISSQVDARE 28 (93)
T ss_pred hHHHHHHHHHHHHHhhHHHHHH
Confidence 56666663 3333334444444
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=70.32 E-value=8.6 Score=27.17 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHH
Q 033656 5 AVFVLVILFLQALA 18 (114)
Q Consensus 5 ~~f~i~~l~l~~~~ 18 (114)
..|||+.|+|++++
T Consensus 4 K~~llL~l~LA~lL 17 (95)
T PF07172_consen 4 KAFLLLGLLLAALL 17 (95)
T ss_pred hHHHHHHHHHHHHH
Confidence 45555544444433
No 4
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=67.14 E-value=12 Score=25.63 Aligned_cols=34 Identities=15% Similarity=0.302 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccccccccCC
Q 033656 5 AVFVLVILFLQALAVVEASTMINNASNNLANRDG 38 (114)
Q Consensus 5 ~~f~i~~l~l~~~~~~~~s~~~~~~~~~~~~~~~ 38 (114)
.+|+|+||.+++.+++...-|--.+|+..-..++
T Consensus 4 Kl~vialLC~aLva~vQ~APQYa~GeeP~YDEdd 37 (65)
T PF10731_consen 4 KLIVIALLCVALVAIVQSAPQYAPGEEPSYDEDD 37 (65)
T ss_pred hhhHHHHHHHHHHHHHhcCcccCCCCCCCcCccc
Confidence 4688889998888866555565555444433333
No 5
>PF09257 BCMA-Tall_bind: BCMA, TALL-1 binding; InterPro: IPR015337 Cytokines can be grouped into a family on the basis of sequence, functional and structural similarities [, , ]. Tumor necrosis factor (TNF) (also known as TNF-alpha or cachectin) is a monocyte-derived cytotoxin that has been implicated in tumour regression, septic shock and cachexia [, ]. The protein is synthesised as a prohormone with an unusually long and atypical signal sequence, which is absent from the mature secreted cytokine []. A short hydrophobic stretch of amino acids serves to anchor the prohormone in lipid bilayers []. Both the mature protein and a partially-processed form of the hormone are secreted after cleavage of the propeptide []. There are a number of different families of TNF, but all these cytokines seem to form homotrimeric (or heterotrimeric in the case of LT-alpha/beta) complexes that are recognised by their specific receptors. Members of this entry, which are predominantly found in the tumour necrosis factor receptor superfamily member 17, BCMA, are required for binding to tumour necrosis factor ligand TALL-1 []. ; PDB: 2KN1_A 1OQD_R 1XU2_T.
Probab=60.13 E-value=7 Score=24.32 Aligned_cols=21 Identities=29% Similarity=0.811 Sum_probs=16.5
Q ss_pred HhhHHhhcCcchhHHHHHHHh
Q 033656 59 ACNRRCKESSRKNMCHRACRT 79 (114)
Q Consensus 59 ~C~~RCs~~~~~~~C~~~C~~ 79 (114)
-|--|||+..-+-.|.+||+.
T Consensus 16 PChLRCsn~tPP~~Cq~YCna 36 (39)
T PF09257_consen 16 PCHLRCSNNTPPLPCQRYCNA 36 (39)
T ss_dssp EHHHHHTSSS--TTTHHHHHH
T ss_pred cceeecCCCCCCccchhhccc
Confidence 388999997778899999984
No 6
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=57.73 E-value=9.9 Score=28.24 Aligned_cols=14 Identities=43% Similarity=0.842 Sum_probs=8.3
Q ss_pred CchHHHHHHHHHHH
Q 033656 1 MKLFAVFVLVILFL 14 (114)
Q Consensus 1 ~kl~~~f~i~~l~l 14 (114)
||++.+++|++|++
T Consensus 1 MKll~~lilli~~~ 14 (212)
T PF11912_consen 1 MKLLISLILLILLI 14 (212)
T ss_pred CcHHHHHHHHHHHH
Confidence 88865555554443
No 7
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=52.29 E-value=29 Score=22.48 Aligned_cols=18 Identities=22% Similarity=0.449 Sum_probs=9.6
Q ss_pred CchHHHHHHHHHHHHHHH
Q 033656 1 MKLFAVFVLVILFLQALA 18 (114)
Q Consensus 1 ~kl~~~f~i~~l~l~~~~ 18 (114)
||++.+++++++++..+.
T Consensus 1 ~~~l~~~l~~~v~~~~~~ 18 (85)
T TIGR02209 1 EKKLYVLLLLAILVSAIS 18 (85)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 455666666555444444
No 8
>PHA02973 hypothetical protein; Provisional
Probab=51.50 E-value=16 Score=26.87 Aligned_cols=18 Identities=22% Similarity=0.432 Sum_probs=14.0
Q ss_pred CchHHHHHHHHHHHHHHH
Q 033656 1 MKLFAVFVLVILFLQALA 18 (114)
Q Consensus 1 ~kl~~~f~i~~l~l~~~~ 18 (114)
|-++++|+|+||++++++
T Consensus 1 ~~~~l~fFi~FL~l~Y~f 18 (102)
T PHA02973 1 MLFLIFFFILFLLLCYFF 18 (102)
T ss_pred CchHHHHHHHHHHHHHHh
Confidence 345677888899999888
No 9
>PF02950 Conotoxin: Conotoxin; InterPro: IPR004214 Cone snail toxins, conotoxins, are small neurotoxic peptides with disulphide connectivity that target ion-channels or G-protein coupled receptors. Based on the number and pattern of disulphide bonds and biological activities, conotoxins can be classified into several families []. Omega, delta and kappa families of conotoxins have a knottin or inhibitor cysteine knot scaffold. The knottin scaffold is a very special disulphide-through-disulphide knot, in which the III-VI disulphide bond crosses the macrocycle formed by two other disulphide bonds (I-IV and II-V) and the interconnecting backbone segments, where I-VI indicates the six cysteine residues starting from the N terminus. The disulphide bonding network, as well as specific amino acids in inter-cysteine loops, provide the specificity of conotoxins []. The cysteine arrangements are the same for omega, delta and kappa families, even though omega conotoxins are calcium channel blockers, whereas delta conotoxins delay the inactivation of sodium channels, and kappa conotoxins are potassium channel blockers []. Mu conotoxins have two types of cysteine arrangements, but the knottin scaffold is not observed. Mu conotoxins target the voltage-gated sodium channels [], and are useful probes for investigating voltage-dependent sodium channels of excitable tissues []. Alpha conotoxins have two types of cysteine arrangements [], and are competitive nicotinic acetylcholine receptor antagonists. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 2EFZ_A 1FYG_A 1RMK_A 1DG0_A 1DFY_A 1DFZ_A 2JQC_A 2YYF_A 2JQB_A 1F3K_A ....
Probab=42.22 E-value=8.4 Score=24.64 Aligned_cols=15 Identities=40% Similarity=0.740 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHH
Q 033656 1 MKLFAVFVLVILFLQ 15 (114)
Q Consensus 1 ~kl~~~f~i~~l~l~ 15 (114)
|||-.+++|++||+.
T Consensus 1 mKLt~vliVavLllt 15 (75)
T PF02950_consen 1 MKLTCVLIVAVLLLT 15 (75)
T ss_dssp ---------------
T ss_pred CCcchHHHHHHHHHH
Confidence 788777777766655
No 10
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=39.12 E-value=32 Score=21.43 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=10.6
Q ss_pred chHHHHHHHHHHHHHHH
Q 033656 2 KLFAVFVLVILFLQALA 18 (114)
Q Consensus 2 kl~~~f~i~~l~l~~~~ 18 (114)
+.+.++-+++++|++++
T Consensus 3 ~ilKFvY~mIiflslfl 19 (54)
T PF07127_consen 3 KILKFVYAMIIFLSLFL 19 (54)
T ss_pred cchhhHHHHHHHHHHHH
Confidence 44555566666767776
No 11
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=35.24 E-value=68 Score=21.46 Aligned_cols=9 Identities=44% Similarity=0.538 Sum_probs=5.0
Q ss_pred chHHHHHHH
Q 033656 2 KLFAVFVLV 10 (114)
Q Consensus 2 kl~~~f~i~ 10 (114)
|++..|+++
T Consensus 7 KL~~~f~~~ 15 (181)
T PF12729_consen 7 KLILGFGLI 15 (181)
T ss_pred HHHHHHHHH
Confidence 555555554
No 12
>PLN03207 stomagen; Provisional
Probab=34.66 E-value=52 Score=24.58 Aligned_cols=7 Identities=29% Similarity=1.279 Sum_probs=3.8
Q ss_pred hhHHhhc
Q 033656 60 CNRRCKE 66 (114)
Q Consensus 60 C~~RCs~ 66 (114)
|.+||+.
T Consensus 84 cr~kc~~ 90 (113)
T PLN03207 84 CRYKCRA 90 (113)
T ss_pred ccccccc
Confidence 5555554
No 13
>PF06589 CRA: Circumsporozoite-related antigen (CRA); InterPro: IPR009512 The mode of choroquine action or resistance of the malarial parasite Plasmodium falciparum is not fully elucidated and presents a huge challenge world wide. Plasmodial EXP-1 protein, also called circumsporozoite-related antigen, changes under chloroquine treatment, making it a potential chloroquine resistance marker []. Although there are no authentic repeats in this antigen, there are a number of internal homologies (N-A-N-P) and (N-A-D-P). The first of these tetramers is the dominant repeat found in the circumsporozoite protein (CSP) of P. falciparum and reacts with antibodies against circumsporozoite-related antigen (CRA). It is possible that immune responses to CRA may act against the CSP also. The CRA is found in many parasitic strains.
Probab=34.09 E-value=32 Score=26.92 Aligned_cols=14 Identities=36% Similarity=0.759 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHH
Q 033656 1 MKLFAVFVLVILFL 14 (114)
Q Consensus 1 ~kl~~~f~i~~l~l 14 (114)
||++.+|+|+|+++
T Consensus 1 mkl~s~~FllF~~i 14 (157)
T PF06589_consen 1 MKLLSAFFLLFCLI 14 (157)
T ss_pred CcHHHHHHHHHHHH
Confidence 68888888866653
No 14
>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional
Probab=33.73 E-value=60 Score=25.75 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=13.5
Q ss_pred CchHHHHHHHHHHHHHHH
Q 033656 1 MKLFAVFVLVILFLQALA 18 (114)
Q Consensus 1 ~kl~~~f~i~~l~l~~~~ 18 (114)
||.++|+++++|++++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (343)
T PRK10936 1 MRKLLFLLLSLFLLSLTA 18 (343)
T ss_pred ChhHHHHHHHHHHHHHHH
Confidence 677778888887777665
No 15
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=32.43 E-value=51 Score=23.58 Aligned_cols=7 Identities=43% Similarity=1.013 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 033656 7 FVLVILF 13 (114)
Q Consensus 7 f~i~~l~ 13 (114)
++|++|+
T Consensus 34 LVIIiLl 40 (85)
T PF10717_consen 34 LVIIILL 40 (85)
T ss_pred HHHHHHH
Confidence 3333443
No 16
>PF15240 Pro-rich: Proline-rich
Probab=31.07 E-value=45 Score=26.52 Aligned_cols=16 Identities=19% Similarity=0.401 Sum_probs=8.0
Q ss_pred hHHHHHHHHHHHHHHH
Q 033656 3 LFAVFVLVILFLQALA 18 (114)
Q Consensus 3 l~~~f~i~~l~l~~~~ 18 (114)
|+++|+++||+|+..-
T Consensus 2 LlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQ 17 (179)
T ss_pred hhHHHHHHHHHhhhcc
Confidence 3444445566655444
No 17
>PHA03066 Hypothetical protein; Provisional
Probab=29.50 E-value=56 Score=24.33 Aligned_cols=15 Identities=13% Similarity=0.476 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHH
Q 033656 4 FAVFVLVILFLQALA 18 (114)
Q Consensus 4 ~~~f~i~~l~l~~~~ 18 (114)
-++|+|+||++++++
T Consensus 6 ~l~fFi~Fl~~~Y~~ 20 (110)
T PHA03066 6 YLLFFIIFLCISYYF 20 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 356777788888888
No 18
>TIGR00810 secG protein translocase, SecG subunit. This family of proteins forms a complex with SecY and SecE. SecA then recruits the SecYEG complex to form an active protein translocation channel.
Probab=29.12 E-value=83 Score=20.65 Aligned_cols=29 Identities=7% Similarity=0.132 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhccccccccc
Q 033656 7 FVLVILFLQALAVVEASTMINNASNNLANR 36 (114)
Q Consensus 7 f~i~~l~l~~~~~~~~s~~~~~~~~~~~~~ 36 (114)
+.++++++++..++..-.|.+.+ +++.+.
T Consensus 4 L~ii~~iisi~LI~~vLlQ~~k~-~gl~~~ 32 (73)
T TIGR00810 4 LLILHIIVAILLIGLVLLQSGKG-GGLGGA 32 (73)
T ss_pred HHHHHHHHHHHHHHHheeecCCC-Cccccc
Confidence 34445555555555555666666 445443
No 19
>COG3462 Predicted membrane protein [Function unknown]
Probab=29.11 E-value=48 Score=24.96 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033656 3 LFAVFVLVILFLQALAVVEASTMINN 28 (114)
Q Consensus 3 l~~~f~i~~l~l~~~~~~~~s~~~~~ 28 (114)
.|-+++++||++.++..+++-+.-++
T Consensus 55 I~~~vvli~lvvfm~~~~g~~r~~~~ 80 (117)
T COG3462 55 IFWAVVLIFLVVFMFYILGAVRRGSD 80 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccch
Confidence 34556666777777776665443333
No 20
>PHA02691 hypothetical protein; Provisional
Probab=28.58 E-value=53 Score=24.50 Aligned_cols=14 Identities=7% Similarity=0.024 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHH
Q 033656 5 AVFVLVILFLQALA 18 (114)
Q Consensus 5 ~~f~i~~l~l~~~~ 18 (114)
++|+|+||++++++
T Consensus 7 l~fFi~FL~l~Y~~ 20 (110)
T PHA02691 7 VALFAAFLAAAYVL 20 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 56777888888888
No 21
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=28.47 E-value=59 Score=26.03 Aligned_cols=18 Identities=28% Similarity=0.619 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033656 5 AVFVLVILFLQALAVVEA 22 (114)
Q Consensus 5 ~~f~i~~l~l~~~~~~~~ 22 (114)
.+|+|+||++++|+.+..
T Consensus 205 wl~i~~~l~~~~Y~i~g~ 222 (268)
T PF09451_consen 205 WLFIILFLFLAAYLIFGS 222 (268)
T ss_pred HHHHHHHHHHHHHhhhhh
Confidence 355666777777774443
No 22
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=27.79 E-value=77 Score=18.90 Aligned_cols=28 Identities=32% Similarity=0.812 Sum_probs=20.1
Q ss_pred cccccCCCCCCCC---CCC-CccccccccCCC
Q 033656 83 RCHCVPPGTYGNK---QAC-PCYASLRTHGNR 110 (114)
Q Consensus 83 kC~CVP~GTyGnk---~~C-PCY~~~~t~~g~ 110 (114)
.|.=.|.|||-+. .+| +|-.+..|...+
T Consensus 10 ~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~G 41 (48)
T PF07699_consen 10 KCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEG 41 (48)
T ss_pred ccCCCCCCccCCccCCccCccCcCCCccCCcC
Confidence 4555689999754 579 898888775543
No 23
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=25.81 E-value=73 Score=27.43 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=17.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhc
Q 033656 2 KLFAVFVLVILFLQALAVVEASTMINN 28 (114)
Q Consensus 2 kl~~~f~i~~l~l~~~~~~~~s~~~~~ 28 (114)
+...+++|++|++.+++|+.-+.+.+|
T Consensus 2 ~~~~~~~i~~lll~lllva~C~~s~~~ 28 (310)
T COG4594 2 HMKKTAIILTLLLLLLLVAACSSSDNN 28 (310)
T ss_pred CchhhHHHHHHHHHHHHHHHhcCcCcc
Confidence 445567777777777776666655333
No 24
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=24.33 E-value=25 Score=28.47 Aligned_cols=21 Identities=38% Similarity=1.081 Sum_probs=16.2
Q ss_pred HHHHHHHhhcCccc-ccCCCCC
Q 033656 72 MCHRACRTCCKRCH-CVPPGTY 92 (114)
Q Consensus 72 ~C~~~C~~CC~kC~-CVP~GTy 92 (114)
..+-.|++||++|. |..--+|
T Consensus 168 d~lH~C~tCcekcllCalk~n~ 189 (205)
T PF15079_consen 168 DSLHQCRTCCEKCLLCALKNNY 189 (205)
T ss_pred cchhhchhhhhhhhhhhccccc
Confidence 46677999999998 7765544
No 25
>PTZ00264 circumsporozoite-related antigen; Provisional
Probab=24.09 E-value=62 Score=25.07 Aligned_cols=14 Identities=29% Similarity=0.493 Sum_probs=10.2
Q ss_pred CchHHHHHHHHHHH
Q 033656 1 MKLFAVFVLVILFL 14 (114)
Q Consensus 1 ~kl~~~f~i~~l~l 14 (114)
||++++|+|+|+++
T Consensus 1 mkils~vFllF~~i 14 (148)
T PTZ00264 1 MKLLSAVFLLFCAI 14 (148)
T ss_pred ChHHHHHHHHHHHH
Confidence 78888877766664
No 26
>PF00322 Endothelin: Endothelin family; InterPro: IPR001928 Endothelins (ET's) are the most potent vasoconstrictors known [, , ]. They stimulate cardiac contraction, regulate release of vasoactive substances, and stimulate mitogenesis in blood vessels in primary culture. They also stimulate contraction in almost all other smooth muscles (e.g., uterus, bronchus, vas deferensa and stomach) and stimulate secretion in several tissues (e.g., kidney, liver and adrenals). Endothelin receptors have also been found in the brain, e.g. cerebral cortex, cerebellum and glial cells. Endothelins have been implicated in a variety of pathophysiological conditions associated with stress, including hypertension, myocardial infarction, subarachnoid haemorrhage and renal failure. Endothelins are synthesised by proteolysis of large preproendothelins, which are cleaved to 'big endothelins' before being processed to the mature peptide. Sarafotoxins (SRTX) and bibrotoxin (BTX) are cardiotoxins from the venom of snakes of the Atractaspis family, structurally and functionally [, ] similar to endothelin. As shown in the following schematic representation, these peptides which are 21 residues long contain two intramolecular disulphide bonds. +-------------+ | | CxCxxxxxxxCxxxCxxxxxx | | +-------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0019229 regulation of vasoconstriction, 0005576 extracellular region; PDB: 1V6R_A 1T7H_A 1EDP_A 1EDN_A 3CMH_A 6CMH_A 1SRB_A 2LDF_A.
Probab=23.32 E-value=47 Score=19.82 Aligned_cols=16 Identities=31% Similarity=0.723 Sum_probs=12.0
Q ss_pred Hhh-cCcchhHHHHHHH
Q 033656 63 RCK-ESSRKNMCHRACR 78 (114)
Q Consensus 63 RCs-~~~~~~~C~~~C~ 78 (114)
||+ .+..-+.|+-||-
T Consensus 5 RCsC~s~~DkeC~yFCh 21 (31)
T PF00322_consen 5 RCSCASWKDKECVYFCH 21 (31)
T ss_dssp -ECCSSSTHHHHHHHHH
T ss_pred ceecCCCcchhhheeec
Confidence 888 5667788999995
No 27
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=23.19 E-value=1.9e+02 Score=21.06 Aligned_cols=16 Identities=13% Similarity=0.086 Sum_probs=9.4
Q ss_pred HHhhhhcccccccccC
Q 033656 22 ASTMINNASNNLANRD 37 (114)
Q Consensus 22 ~s~~~~~~~~~~~~~~ 37 (114)
....++-++|+|+.+=
T Consensus 86 I~lL~svG~e~LPgVl 101 (103)
T PF12955_consen 86 IGLLFSVGSEELPGVL 101 (103)
T ss_pred HHHHHHcCCCCCCCcc
Confidence 3345566667777653
No 28
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=22.93 E-value=67 Score=19.60 Aligned_cols=6 Identities=33% Similarity=0.606 Sum_probs=3.5
Q ss_pred CchHHH
Q 033656 1 MKLFAV 6 (114)
Q Consensus 1 ~kl~~~ 6 (114)
||.+.+
T Consensus 1 Mk~l~~ 6 (36)
T PF08194_consen 1 MKCLSL 6 (36)
T ss_pred CceeHH
Confidence 566555
No 29
>PRK09039 hypothetical protein; Validated
Probab=21.94 E-value=84 Score=26.36 Aligned_cols=15 Identities=13% Similarity=0.445 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHH
Q 033656 4 FAVFVLVILFLQALA 18 (114)
Q Consensus 4 ~~~f~i~~l~l~~~~ 18 (114)
.++|++++|.++.||
T Consensus 29 ~~~f~l~~f~~~q~f 43 (343)
T PRK09039 29 VIMFLLTVFVVAQFF 43 (343)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344555544444443
No 30
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=21.55 E-value=69 Score=18.07 Aligned_cols=12 Identities=17% Similarity=0.265 Sum_probs=5.3
Q ss_pred chHHHHHHHHHH
Q 033656 2 KLFAVFVLVILF 13 (114)
Q Consensus 2 kl~~~f~i~~l~ 13 (114)
|.+++.++++|.
T Consensus 8 Kkil~~l~a~~~ 19 (25)
T PF08139_consen 8 KKILFPLLALFM 19 (25)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 31
>PRK06870 secG preprotein translocase subunit SecG; Reviewed
Probab=21.08 E-value=1.3e+02 Score=19.93 Aligned_cols=28 Identities=11% Similarity=0.268 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccc
Q 033656 7 FVLVILFLQALAVVEASTMINNASNNLAN 35 (114)
Q Consensus 7 f~i~~l~l~~~~~~~~s~~~~~~~~~~~~ 35 (114)
++++++++++..++..-.|.+.+ +++.+
T Consensus 5 l~ii~vi~~i~LI~~vLlQ~~k~-~gl~~ 32 (76)
T PRK06870 5 LLVLLLIVALLLIILVLLQSGKG-AGLGG 32 (76)
T ss_pred HHHHHHHHHHHHHHHheeeCCCC-Ccccc
Confidence 44444455555545555555554 45544
No 32
>PRK14762 membrane protein; Provisional
Probab=20.91 E-value=1.8e+02 Score=16.79 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=10.7
Q ss_pred CchHHHHHHHHHHHHHHHHHH
Q 033656 1 MKLFAVFVLVILFLQALAVVE 21 (114)
Q Consensus 1 ~kl~~~f~i~~l~l~~~~~~~ 21 (114)
||.+.-.+.++|++-++.+..
T Consensus 1 mki~lw~i~iifligllvvtg 21 (27)
T PRK14762 1 MKIILWAVLIIFLIGLLVVTG 21 (27)
T ss_pred CeeHHHHHHHHHHHHHHHHHH
Confidence 455554555555555554433
No 33
>PRK13681 hypothetical protein; Provisional
Probab=20.76 E-value=1.2e+02 Score=18.54 Aligned_cols=17 Identities=24% Similarity=0.516 Sum_probs=11.6
Q ss_pred CchHHHHHHHHHHHHHH
Q 033656 1 MKLFAVFVLVILFLQAL 17 (114)
Q Consensus 1 ~kl~~~f~i~~l~l~~~ 17 (114)
|+...+++|.+|++..+
T Consensus 1 M~~~K~~~i~lfalmAi 17 (35)
T PRK13681 1 MRIAKIGVIALFLLMAI 17 (35)
T ss_pred CcHHHHHHHHHHHHHHh
Confidence 56677778877776544
Done!