Query 033656
Match_columns 114
No_of_seqs 126 out of 195
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 07:29:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xu2_R Tumor necrosis factor r 34.6 13 0.00045 23.0 0.9 19 60-78 20-38 (47)
2 2h9e_C Anti-coagulant protein 33.1 4 0.00014 26.8 -1.7 50 54-107 13-79 (84)
3 4b7j_A Neuraminidase; hydrolas 25.2 22 0.00076 30.8 1.1 12 90-101 271-282 (469)
4 2htq_A Neuraminidase; zanamivi 24.8 29 0.00098 29.5 1.6 17 88-104 187-203 (390)
5 3tje_F Tumor necrosis factor r 22.5 31 0.0011 24.9 1.2 23 78-103 41-72 (156)
6 1dec_A Decorsin; blood coagula 21.0 22 0.00077 21.0 0.2 6 94-99 18-23 (39)
7 1v0z_A Neuraminidase; glycosid 19.6 23 0.00079 30.1 0.0 17 88-104 188-204 (389)
8 1f8d_A Neuraminidase; hydrolas 19.4 24 0.00081 30.0 0.0 17 88-104 188-204 (388)
9 3arc_L Photosystem II reaction 18.0 1.1E+02 0.0037 18.1 2.7 9 5-13 23-31 (37)
10 4gdi_A Neuraminidase; influenz 17.7 26 0.00088 29.7 -0.1 15 89-103 191-205 (373)
No 1
>1xu2_R Tumor necrosis factor receptor superfamily member; TNFSF, cytokine, CRD, jelly-roll, cysteine-rich, H growth factor receptor complex; 2.35A {Homo sapiens} SCOP: g.24.1.2 PDB: 2kn1_A* 1oqd_K
Probab=34.64 E-value=13 Score=23.05 Aligned_cols=19 Identities=32% Similarity=0.891 Sum_probs=16.7
Q ss_pred hhHHhhcCcchhHHHHHHH
Q 033656 60 CNRRCKESSRKNMCHRACR 78 (114)
Q Consensus 60 C~~RCs~~~~~~~C~~~C~ 78 (114)
|..||+.++.+..|-.||.
T Consensus 20 C~l~Cs~~~~p~tC~~fC~ 38 (47)
T 1xu2_R 20 CQLRCSSNTPPLTCQRYCN 38 (47)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred hhcccCCCCCcchHHHHHh
Confidence 8899997777899999996
No 2
>2h9e_C Anti-coagulant protein C2; factor XA, NAPC2, hydrolase-hydrolase inhibitor C blood clotting; HET: DTY; 2.20A {Ancylostoma caninum} SCOP: g.22.1.1 PDB: 1cou_A
Probab=33.11 E-value=4 Score=26.77 Aligned_cols=50 Identities=28% Similarity=0.656 Sum_probs=21.4
Q ss_pred CCchH-HhhHHhhcC-------cc-hhHH-HHHHHhhcCcccccCCCCCCCC-------CCCCcccccccc
Q 033656 54 INCSQ-ACNRRCKES-------SR-KNMC-HRACRTCCKRCHCVPPGTYGNK-------QACPCYASLRTH 107 (114)
Q Consensus 54 ~~C~~-~C~~RCs~~-------~~-~~~C-~~~C~~CC~kC~CVP~GTyGnk-------~~CPCY~~~~t~ 107 (114)
.+|++ +|...|... .+ ...| .+.|. .-|.|.+ |++-|. ++|||+.+-...
T Consensus 13 ~~Cgs~~C~~tC~~~~~~~~~~~~~~~~C~~~~C~---~GC~C~~-G~vr~~~g~CV~~~~Cpc~~~~~~y 79 (84)
T 2h9e_C 13 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCH---QDCVCEE-GFYRNKDDKCVSAEDCELDNMDFIY 79 (84)
T ss_dssp C-------CCBCCCTTCC----------------------CEECS-SCEECTTCCEECHHHHGGGGEEEEC
T ss_pred CCCCCCccchhhCccccccccccCCCCCCCCCCCC---cCCCCCC-CeEEcCCCCEECHHHCCCCcCCeEC
Confidence 47999 999999863 22 3678 67776 6788854 888773 568887654433
No 3
>4b7j_A Neuraminidase; hydrolase, NAI, NAIS, oseltamivir, zanamivir, antiviral resistance, immunocompromised, H275Y; HET: 5AX G39; 2.42A {Influenza a virus} PDB: 4b7m_A* 4b7n_A* 4b7q_A*
Probab=25.25 E-value=22 Score=30.80 Aligned_cols=12 Identities=25% Similarity=0.755 Sum_probs=5.1
Q ss_pred CCCCCCCCCCcc
Q 033656 90 GTYGNKQACPCY 101 (114)
Q Consensus 90 GTyGnk~~CPCY 101 (114)
|+..|.|||.||
T Consensus 271 gs~~HiEECSCY 282 (469)
T 4b7j_A 271 APNYHYEECSCY 282 (469)
T ss_dssp CTTCCCCSCEEE
T ss_pred CCcccceeeeec
Confidence 344444444444
No 4
>2htq_A Neuraminidase; zanamivir, hydrolase; HET: ZMR; 2.20A {Influenza a virus} PDB: 2ht7_A* 2ht8_A* 2ht5_A* 2htr_A* 2htu_A*
Probab=24.82 E-value=29 Score=29.51 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=14.0
Q ss_pred CCCCCCCCCCCCccccc
Q 033656 88 PPGTYGNKQACPCYASL 104 (114)
Q Consensus 88 P~GTyGnk~~CPCY~~~ 104 (114)
.+|+.+|.|||.||-+.
T Consensus 187 l~gsa~HiEECSCYp~~ 203 (390)
T 2htq_A 187 ISFNGGHIEECSCYPND 203 (390)
T ss_dssp ECCTTCCCCSCCCCEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888999999999754
No 5
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=22.51 E-value=31 Score=24.85 Aligned_cols=23 Identities=39% Similarity=1.040 Sum_probs=14.4
Q ss_pred HhhcCcccccCCCCCCC--------CCCC-Ccccc
Q 033656 78 RTCCKRCHCVPPGTYGN--------KQAC-PCYAS 103 (114)
Q Consensus 78 ~~CC~kC~CVP~GTyGn--------k~~C-PCY~~ 103 (114)
+.||.+| |||||=. .-+| ||-.+
T Consensus 41 ~~CC~~C---ppG~~v~~~Ct~~~~~t~C~pC~~g 72 (156)
T 3tje_F 41 QFCHKPC---PPGERKARDCTVNGDEPDCVPCQEG 72 (156)
T ss_dssp TTCSSCB---CTTEEESSCCCSSSCCCCEEECCTT
T ss_pred CeECCCC---CCCCeECCcCCCCCCCCcceeCCCC
Confidence 5567766 6787732 3567 77555
No 6
>1dec_A Decorsin; blood coagulation; NMR {Macrobdella decora} SCOP: g.3.15.2
Probab=21.04 E-value=22 Score=21.04 Aligned_cols=6 Identities=67% Similarity=1.497 Sum_probs=3.7
Q ss_pred CCCCCC
Q 033656 94 NKQACP 99 (114)
Q Consensus 94 nk~~CP 99 (114)
||+|||
T Consensus 18 nkdecp 23 (39)
T 1dec_A 18 NKDECP 23 (39)
T ss_dssp SSSEEC
T ss_pred cCCCCC
Confidence 566665
No 7
>1v0z_A Neuraminidase; glycosidase, hydrolase; HET: NAG MAN BMA; 1.84A {Influenza a virus} PDB: 1w1x_A* 1w20_A* 1w21_A* 2cml_A*
Probab=19.64 E-value=23 Score=30.07 Aligned_cols=17 Identities=24% Similarity=0.610 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCccccc
Q 033656 88 PPGTYGNKQACPCYASL 104 (114)
Q Consensus 88 P~GTyGnk~~CPCY~~~ 104 (114)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (389)
T 1v0z_A 188 LAGNAQHIEECSCYGAG 204 (389)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCccceEEeeeccCC
Confidence 46888999999999764
No 8
>1f8d_A Neuraminidase; hydrolase, influenza protein, glycosylated PR amino-DANA, hydrolase-hydrolase inhibitor complex; HET: NAG MAN 9AM; 1.40A {Influenza a virus} SCOP: b.68.1.1 PDB: 1a14_N* 1bji_A* 1f8b_A* 1f8c_A* 1f8e_A* 1l7f_A* 1mwe_A* 1nmc_N* 1nnc_A* 2c4a_A* 2c4l_A* 2qwi_A* 2qwj_A* 2qwk_A* 7nn9_A* 1nca_N* 2qwc_A* 1l7h_A* 2qwb_A* 2qwa_A* ...
Probab=19.35 E-value=24 Score=30.00 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=14.1
Q ss_pred CCCCCCCCCCCCccccc
Q 033656 88 PPGTYGNKQACPCYASL 104 (114)
Q Consensus 88 P~GTyGnk~~CPCY~~~ 104 (114)
.+|+.+|.|||.||-+.
T Consensus 188 l~gs~~HiEECSCYp~~ 204 (388)
T 1f8d_A 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeEecCC
Confidence 46888999999999765
No 9
>3arc_L Photosystem II reaction center protein L; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_L* 3a0b_L* 3a0h_L* 2axt_L* 3bz1_L* 3bz2_L* 3kzi_L* 3prq_L* 3prr_L*
Probab=17.95 E-value=1.1e+02 Score=18.08 Aligned_cols=9 Identities=44% Similarity=0.932 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 033656 5 AVFVLVILF 13 (114)
Q Consensus 5 ~~f~i~~l~ 13 (114)
++|++.+++
T Consensus 23 lifvlavlF 31 (37)
T 3arc_L 23 LILVLALLF 31 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 333333333
No 10
>4gdi_A Neuraminidase; influenza virus, beta-propeller, EC viral protein; HET: NAG BMA FUC FUL GOL MAN; 1.95A {Influenza a virus} PDB: 4gez_A* 4fvk_A* 4gdj_A*
Probab=17.72 E-value=26 Score=29.66 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCcccc
Q 033656 89 PGTYGNKQACPCYAS 103 (114)
Q Consensus 89 ~GTyGnk~~CPCY~~ 103 (114)
+|+..|.|||.||.+
T Consensus 191 ~~s~~HiEECSCYp~ 205 (373)
T 4gdi_A 191 NTTGINFEYSTCYTI 205 (373)
T ss_dssp CCTTCCCEEEEEEEE
T ss_pred CCCCCCceeeeecCC
Done!