Query 033656
Match_columns 114
No_of_seqs 126 out of 195
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 07:30:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033656.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033656hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2h9ec1 g.22.1.1 (C:6-83) Anti 58.6 0.5 3.7E-05 29.1 -1.4 53 54-107 8-74 (78)
2 d1jv2b5 g.3.11.6 (B:563-605) I 51.5 2.7 0.0002 24.1 1.2 19 81-99 21-40 (43)
3 d1xu2r_ g.24.1.2 (R:) Tumor ne 46.2 3.3 0.00024 23.1 0.9 19 60-78 17-35 (36)
4 d1exta1 g.24.1.1 (A:13-71) Tum 40.9 2.6 0.00019 24.6 -0.0 25 79-106 16-49 (59)
5 d2aepa1 b.68.1.1 (A:83-469) In 27.5 6.2 0.00045 31.5 0.1 18 87-104 185-202 (387)
6 d1f8ea_ b.68.1.1 (A:) Influenz 24.6 7.6 0.00055 31.0 0.1 17 88-104 188-204 (388)
7 d1deca_ g.3.15.2 (A:) Decorsin 21.0 11 0.00077 21.0 0.2 6 94-99 18-23 (39)
8 d2axtl1 f.23.31.1 (L:1-37) Pho 20.7 41 0.0029 18.5 2.7 9 5-13 23-31 (37)
9 d2c7na1 g.39.1.15 (A:18-73) Ra 20.1 8.4 0.00061 23.1 -0.4 16 90-105 7-26 (56)
10 d2heyr3 g.24.1.1 (R:29-82) Tum 20.0 6.8 0.0005 22.5 -0.8 25 78-105 12-44 (54)
No 1
>d2h9ec1 g.22.1.1 (C:6-83) Anticoagulant protein {Dog hookworm (Ancylostoma caninum) [TaxId: 29170]}
Probab=58.57 E-value=0.5 Score=29.08 Aligned_cols=53 Identities=23% Similarity=0.500 Sum_probs=23.3
Q ss_pred CCchH-HhhHHhhcCcchhHHHHHHHh------hcCcccccCCCCCCCCC-------CCCcccccccc
Q 033656 54 INCSQ-ACNRRCKESSRKNMCHRACRT------CCKRCHCVPPGTYGNKQ-------ACPCYASLRTH 107 (114)
Q Consensus 54 ~~C~~-~C~~RCs~~~~~~~C~~~C~~------CC~kC~CVP~GTyGnk~-------~CPCY~~~~t~ 107 (114)
..|++ .|..-|+.-.....|...++. |=.-|.| |+|++-|.+ +|||+.+=+..
T Consensus 8 ~~C~~~~C~~tC~~~~~~~~c~~~~~~~c~~~~CveGC~C-p~G~v~~~~g~CV~~~~CpC~~~g~~Y 74 (78)
T d2h9ec1 8 DSCGSKECDKKCKYDGVEEEDDEEPNVPCLVRVCHQDCVC-EEGFYRNKDDKCVSAEDCELDNMDFIY 74 (78)
T ss_dssp C-------CCBCCCTTCC-------------------CEE-CSSCEECTTCCEECHHHHGGGGEEEEC
T ss_pred cccCCCcCccccCCCcccccccccCCccccCCCCCCcCCC-CCCeeEcCCCCEEChhhCCcccCCEEc
Confidence 45665 477777665555555544432 3356778 899987653 57898665544
No 2
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=51.49 E-value=2.7 Score=24.06 Aligned_cols=19 Identities=47% Similarity=1.522 Sum_probs=14.4
Q ss_pred cCcccccCCCCCCCC-CCCC
Q 033656 81 CKRCHCVPPGTYGNK-QACP 99 (114)
Q Consensus 81 C~kC~CVP~GTyGnk-~~CP 99 (114)
|++|.|--||.+|.. |+||
T Consensus 21 cG~C~C~~~gy~G~~Ce~Cp 40 (43)
T d1jv2b5 21 CGSCVCIQPGSYGDTCEKCP 40 (43)
T ss_dssp TTEEEECCSSCBSTTSCBCT
T ss_pred CCEeEeCCCCccCCccccCC
Confidence 789999777888865 5565
No 3
>d1xu2r_ g.24.1.2 (R:) Tumor necrosis factor receptor superfamily member 17, BCMA {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.19 E-value=3.3 Score=23.08 Aligned_cols=19 Identities=32% Similarity=0.891 Sum_probs=17.2
Q ss_pred hhHHhhcCcchhHHHHHHH
Q 033656 60 CNRRCKESSRKNMCHRACR 78 (114)
Q Consensus 60 C~~RCs~~~~~~~C~~~C~ 78 (114)
|.-|||..+-+-.|.+||+
T Consensus 17 c~lrcs~~~ppl~cq~yc~ 35 (36)
T d1xu2r_ 17 CQLRCSSNTPPLTCQRYCN 35 (36)
T ss_dssp GGGTTTSSSCCGGGHHHHH
T ss_pred ceeecCCCCCchhhhhhcc
Confidence 7889998888999999996
No 4
>d1exta1 g.24.1.1 (A:13-71) Tumor necrosis factor (TNF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.93 E-value=2.6 Score=24.65 Aligned_cols=25 Identities=40% Similarity=1.038 Sum_probs=16.4
Q ss_pred hhcCcccccCCCCC------C--CCCCC-Cccccccc
Q 033656 79 TCCKRCHCVPPGTY------G--NKQAC-PCYASLRT 106 (114)
Q Consensus 79 ~CC~kC~CVP~GTy------G--nk~~C-PCY~~~~t 106 (114)
.||.+| |||+| + ..-+| ||-..-.+
T Consensus 16 ~cC~~C---ppG~~~~~~Ct~~~~~t~C~pC~~gtyt 49 (59)
T d1exta1 16 ICCTKC---HKGTYLYNDCPGPGQDTDCRECESGSFT 49 (59)
T ss_dssp CEEECB---CTTEEEEECCSSTTSCCEEEECCTTEEC
T ss_pred cCCCCC---CCCCeecCccCCCCCCCEeccCCCCCcc
Confidence 466665 89988 4 24688 88665433
No 5
>d2aepa1 b.68.1.1 (A:83-469) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=27.54 E-value=6.2 Score=31.50 Aligned_cols=18 Identities=22% Similarity=0.624 Sum_probs=15.1
Q ss_pred cCCCCCCCCCCCCccccc
Q 033656 87 VPPGTYGNKQACPCYASL 104 (114)
Q Consensus 87 VP~GTyGnk~~CPCY~~~ 104 (114)
.++|+.++.|||.||.+.
T Consensus 185 ~l~g~~~HiEECSCYp~~ 202 (387)
T d2aepa1 185 PLSGSAQHVEECSCYPRY 202 (387)
T ss_dssp ECCSSCCCCEEEEEEEET
T ss_pred ecCCCcCceEeeeecCCC
Confidence 367899999999999765
No 6
>d1f8ea_ b.68.1.1 (A:) Influenza neuraminidase {Influenza A virus, different strains [TaxId: 11320]}
Probab=24.58 E-value=7.6 Score=30.98 Aligned_cols=17 Identities=29% Similarity=0.673 Sum_probs=14.3
Q ss_pred CCCCCCCCCCCCccccc
Q 033656 88 PPGTYGNKQACPCYASL 104 (114)
Q Consensus 88 P~GTyGnk~~CPCY~~~ 104 (114)
++|+.++.|||.||.+.
T Consensus 188 l~g~~~HiEECSCYp~~ 204 (388)
T d1f8ea_ 188 LAGTAKHIEECSCYGER 204 (388)
T ss_dssp CCSSCCCCEEEEEEEET
T ss_pred cCCCcCceEeeeecCCC
Confidence 57888999999999764
No 7
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=21.04 E-value=11 Score=21.04 Aligned_cols=6 Identities=67% Similarity=1.497 Sum_probs=3.7
Q ss_pred CCCCCC
Q 033656 94 NKQACP 99 (114)
Q Consensus 94 nk~~CP 99 (114)
||+|||
T Consensus 18 nkdecp 23 (39)
T d1deca_ 18 NKDECP 23 (39)
T ss_dssp SSSEEC
T ss_pred cCCCCC
Confidence 566665
No 8
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=20.69 E-value=41 Score=18.47 Aligned_cols=9 Identities=44% Similarity=0.932 Sum_probs=3.6
Q ss_pred HHHHHHHHH
Q 033656 5 AVFVLVILF 13 (114)
Q Consensus 5 ~~f~i~~l~ 13 (114)
.+|++.+|+
T Consensus 23 lifvl~vLF 31 (37)
T d2axtl1 23 LILVLALLF 31 (37)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344443444
No 9
>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.14 E-value=8.4 Score=23.14 Aligned_cols=16 Identities=38% Similarity=0.887 Sum_probs=12.0
Q ss_pred CCCCC---CCCC-Ccccccc
Q 033656 90 GTYGN---KQAC-PCYASLR 105 (114)
Q Consensus 90 GTyGn---k~~C-PCY~~~~ 105 (114)
|.||| ...| .||+++.
T Consensus 7 GFyG~~~~~g~CSkCyr~~~ 26 (56)
T d2c7na1 7 GYYGNPAWQGFCSKCWREEY 26 (56)
T ss_dssp SSCCCGGGTTCCHHHHHHHH
T ss_pred CCCCCcccCCcchHHHHHHH
Confidence 66665 5889 7999874
No 10
>d2heyr3 g.24.1.1 (R:29-82) Tumor necrosis factor receptor superfamily member 4, OX40L receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.96 E-value=6.8 Score=22.54 Aligned_cols=25 Identities=32% Similarity=0.990 Sum_probs=15.5
Q ss_pred HhhcCcccccCCCCC-------CCCCCC-Ccccccc
Q 033656 78 RTCCKRCHCVPPGTY-------GNKQAC-PCYASLR 105 (114)
Q Consensus 78 ~~CC~kC~CVP~GTy-------Gnk~~C-PCY~~~~ 105 (114)
|.||.+| ||||| ...-+| ||-....
T Consensus 12 g~CC~~C---~pG~~~~~~Cs~~~~t~C~pC~~gty 44 (54)
T d2heyr3 12 DRCCHEC---RPGNGMVSRCSRSQNTVCRPCGPGFY 44 (54)
T ss_dssp TEEEECB---CTTEEEEECCCSSCCCEEEECCTTEE
T ss_pred CeECCCC---CCCCeEcCcCCCCCCCeeccCcCCCc
Confidence 5677775 78877 344567 6755443
Done!