Your job contains 1 sequence.
>033657
MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCT
RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 033657
(114 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2180310 - symbol:AT5G27820 species:3702 "Arabi... 436 4.6e-41 1
TAIR|locus:2087535 - symbol:AT3G20230 species:3702 "Arabi... 148 1.5e-10 1
UNIPROTKB|Q9KP00 - symbol:rplR "50S ribosomal protein L18... 146 2.5e-10 1
TIGR_CMR|VC_2580 - symbol:VC_2580 "ribosomal protein L18"... 146 2.5e-10 1
TIGR_CMR|SO_0247 - symbol:SO_0247 "ribosomal protein L18"... 134 4.7e-09 1
UNIPROTKB|P0C018 - symbol:rplR "50S ribosomal subunit pro... 125 4.2e-08 1
TIGR_CMR|CHY_2293 - symbol:CHY_2293 "ribosomal protein L1... 119 1.8e-07 1
TIGR_CMR|CPS_0617 - symbol:CPS_0617 "ribosomal protein L1... 118 2.3e-07 1
TIGR_CMR|GSU_2841 - symbol:GSU_2841 "ribosomal protein L1... 114 6.1e-07 1
TAIR|locus:1005716736 - symbol:AT1G08845 species:3702 "Ar... 117 6.6e-07 1
TIGR_CMR|SPO_0501 - symbol:SPO_0501 "ribosomal protein L1... 113 7.8e-07 1
TIGR_CMR|BA_0126 - symbol:BA_0126 "ribosomal protein L18"... 111 1.3e-06 1
TIGR_CMR|CBU_0254 - symbol:CBU_0254 "ribosomal protein L1... 108 2.6e-06 1
TAIR|locus:2075934 - symbol:AT3G45020 species:3702 "Arabi... 108 2.6e-06 1
TAIR|locus:2077016 - symbol:AT3G22450 species:3702 "Arabi... 111 6.1e-06 1
TAIR|locus:2007690 - symbol:EMB3105 "EMBRYO DEFECTIVE 310... 86 0.00090 1
>TAIR|locus:2180310 [details] [associations]
symbol:AT5G27820 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0042254 "ribosome
biogenesis" evidence=ISS] [GO:0006354 "DNA-dependent transcription,
elongation" evidence=RCA] InterPro:IPR005484 Pfam:PF00861
EMBL:CP002688 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AY085957 EMBL:BT024558 IPI:IPI00535527 RefSeq:NP_198134.1
UniGene:At.30784 HSSP:P09415 ProteinModelPortal:Q8LDK5 SMR:Q8LDK5
STRING:Q8LDK5 PRIDE:Q8LDK5 EnsemblPlants:AT5G27820.1 GeneID:832844
KEGG:ath:AT5G27820 TAIR:At5g27820 HOGENOM:HOG000248743
InParanoid:Q8LDK5 OMA:KMHFTNK PhylomeDB:Q8LDK5
ProtClustDB:CLSN2687140 Genevestigator:Q8LDK5 Uniprot:Q8LDK5
Length = 114
Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
Identities = 85/114 (74%), Positives = 97/114 (85%)
Query: 1 MVIPPPVRPPKLSNFLKPYVLRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCT 60
MVIPP VRPP+L ++LKPYVL+MHFTNK+V AQVIHSP QEKALR ++ T
Sbjct: 1 MVIPPAVRPPRLFDYLKPYVLKMHFTNKFVHAQVIHSPTATVACSASSQEKALRETMDIT 60
Query: 61 RDVAAASKIGKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKLL 114
RDVAAASKIGKILGERLL+KDIPAVT+ +K+EQRYHGKVKAVIDS+REAGVKLL
Sbjct: 61 RDVAAASKIGKILGERLLMKDIPAVTIQMKKEQRYHGKVKAVIDSVREAGVKLL 114
>TAIR|locus:2087535 [details] [associations]
symbol:AT3G20230 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA;ISS] [GO:0006412 "translation" evidence=IEA;ISS]
[GO:0009507 "chloroplast" evidence=ISM] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=RCA] InterPro:IPR005484
Pfam:PF00861 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AP000383 EMBL:AY086535
EMBL:BT000934 EMBL:AK317176 IPI:IPI00522889 RefSeq:NP_566655.1
UniGene:At.26916 UniGene:At.38271 ProteinModelPortal:Q9LJX6
SMR:Q9LJX6 STRING:Q9LJX6 PaxDb:Q9LJX6 PRIDE:Q9LJX6
EnsemblPlants:AT3G20230.1 GeneID:821567 KEGG:ath:AT3G20230
TAIR:At3g20230 eggNOG:NOG290803 HOGENOM:HOG000239373
InParanoid:Q9LJX6 OMA:TDMYMRP PhylomeDB:Q9LJX6
ProtClustDB:CLSN2688588 ArrayExpress:Q9LJX6 Genevestigator:Q9LJX6
Uniprot:Q9LJX6
Length = 187
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 28/97 (28%), Positives = 56/97 (57%)
Query: 15 FLKPYVLRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILG 74
+++P++L + F+ K++ A+V+H P + +R++I D A IGK++
Sbjct: 87 YMRPFLLNVFFSRKFIHAKVMHRPTSKVISVATTNARDIRTNIPSLVDNEACRLIGKLIA 146
Query: 75 ERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGV 111
ER + D+ AV+ ++ +R GK+ VID+++E G+
Sbjct: 147 ERSMEADVYAVSYEPRKGERIEGKLGIVIDTIKEHGI 183
>UNIPROTKB|Q9KP00 [details] [associations]
symbol:rplR "50S ribosomal protein L18" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0003735
"structural constituent of ribosome" evidence=ISS] [GO:0006412
"translation" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B PIR:F82057 RefSeq:NP_232208.1
ProteinModelPortal:Q9KP00 SMR:Q9KP00 PRIDE:Q9KP00 DNASU:2615597
GeneID:2615597 KEGG:vch:VC2580 PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T ++V AQVI + EKA+R + T ++ AA +GK + ER L K
Sbjct: 26 LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
+ V F + +YHG+V A+ DS REAG+K
Sbjct: 86 GV-TVVAFDRSGFQYHGRVAALADSAREAGLK 116
>TIGR_CMR|VC_2580 [details] [associations]
symbol:VC_2580 "ribosomal protein L18" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:F82057
RefSeq:NP_232208.1 ProteinModelPortal:Q9KP00 SMR:Q9KP00
PRIDE:Q9KP00 DNASU:2615597 GeneID:2615597 KEGG:vch:VC2580
PATRIC:20084186 Uniprot:Q9KP00
Length = 117
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 35/92 (38%), Positives = 51/92 (55%)
Query: 21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T ++V AQVI + EKA+R + T ++ AA +GK + ER L K
Sbjct: 26 LVVHRTPRHVYAQVIAANGSEVIAAASTVEKAIREQVKYTGNIDAAKAVGKAVAERALEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
+ V F + +YHG+V A+ DS REAG+K
Sbjct: 86 GV-TVVAFDRSGFQYHGRVAALADSAREAGLK 116
>TIGR_CMR|SO_0247 [details] [associations]
symbol:SO_0247 "ribosomal protein L18" species:211586
"Shewanella oneidensis MR-1" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_715887.1 ProteinModelPortal:Q8EK53 SMR:Q8EK53
GeneID:1168130 KEGG:son:SO_0247 PATRIC:23520187 OMA:GRQTRAK
Uniprot:Q8EK53
Length = 116
Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 32/92 (34%), Positives = 52/92 (56%)
Query: 21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T +++ AQVI+ P EKA++ + T +V AA +GK + ER + K
Sbjct: 26 LVVHRTPRHIYAQVIN-PEAQVVAAASTVEKAVKEQLKSTGNVDAAKAVGKFVAERAIEK 84
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
+ V F + +YHG+V A+ D+ REAG++
Sbjct: 85 GVTNVA-FDRSGFKYHGRVAALADAAREAGLQ 115
>UNIPROTKB|P0C018 [details] [associations]
symbol:rplR "50S ribosomal subunit protein L18"
species:83333 "Escherichia coli K-12" [GO:0006412 "translation"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019843 "rRNA binding" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:X01563
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006412 EMBL:U18997 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 PDB:2VHM PDBsum:2VHM PDB:2RDO
PDBsum:2RDO eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
OMA:GNKYHGR TIGRFAMs:TIGR00060 PDB:3J0T PDB:3J0W PDB:3J0Y PDB:3J11
PDB:3J12 PDB:3J14 PDB:3SGF PDB:3UOS PDBsum:3J0T PDBsum:3J0W
PDBsum:3J0Y PDBsum:3J11 PDBsum:3J12 PDBsum:3J14 PDBsum:3SGF
PDBsum:3UOS PDB:1P85 PDB:1P86 PDB:1VS6 PDB:1VS8 PDB:1VT2 PDB:2AW4
PDB:2AWB PDB:2GYA PDB:2GYC PDB:2I2T PDB:2I2V PDB:2J28 PDB:2QAM
PDB:2QAO PDB:2QBA PDB:2QBC PDB:2QBE PDB:2QBG PDB:2QBI PDB:2QBK
PDB:2QOV PDB:2QOX PDB:2QOZ PDB:2QP1 PDB:2VHN PDB:2WWQ PDB:2Z4L
PDB:2Z4N PDB:3DF2 PDB:3DF4 PDB:3E1B PDB:3E1D PDB:3FIK PDB:3I1N
PDB:3I1P PDB:3I1R PDB:3I1T PDB:3I20 PDB:3I22 PDB:3IZT PDB:3IZU
PDB:3J01 PDB:3J19 PDB:3KCR PDB:3OAS PDB:3OAT PDB:3OFC PDB:3OFD
PDB:3OFQ PDB:3OFR PDB:3OFZ PDB:3OG0 PDB:3ORB PDB:3R8S PDB:3R8T
PDB:4GAR PDB:4GAU PDBsum:1P85 PDBsum:1P86 PDBsum:1VS6 PDBsum:1VS8
PDBsum:1VT2 PDBsum:2AW4 PDBsum:2AWB PDBsum:2GYA PDBsum:2GYC
PDBsum:2I2T PDBsum:2I2V PDBsum:2J28 PDBsum:2QAM PDBsum:2QAO
PDBsum:2QBA PDBsum:2QBC PDBsum:2QBE PDBsum:2QBG PDBsum:2QBI
PDBsum:2QBK PDBsum:2QOV PDBsum:2QOX PDBsum:2QOZ PDBsum:2QP1
PDBsum:2VHN PDBsum:2WWQ PDBsum:2Z4L PDBsum:2Z4N PDBsum:3DF2
PDBsum:3DF4 PDBsum:3E1B PDBsum:3E1D PDBsum:3FIK PDBsum:3I1N
PDBsum:3I1P PDBsum:3I1R PDBsum:3I1T PDBsum:3I20 PDBsum:3I22
PDBsum:3IZT PDBsum:3IZU PDBsum:3J01 PDBsum:3J19 PDBsum:3KCR
PDBsum:3OAS PDBsum:3OAT PDBsum:3OFC PDBsum:3OFD PDBsum:3OFQ
PDBsum:3OFR PDBsum:3OFZ PDBsum:3OG0 PDBsum:3ORB PDBsum:3R8S
PDBsum:3R8T PDBsum:4GAR PDBsum:4GAU PDB:3BBX PDBsum:3BBX
ProtClustDB:PRK05593 HAMAP:MF_01337_B PIR:A02803 RefSeq:NP_417763.1
RefSeq:YP_492128.1 ProteinModelPortal:P0C018 SMR:P0C018
DIP:DIP-47908N IntAct:P0C018 MINT:MINT-1293631 PaxDb:P0C018
PRIDE:P0C018 EnsemblBacteria:EBESCT00000004130
EnsemblBacteria:EBESCT00000018241 GeneID:12934402 GeneID:947804
KEGG:ecj:Y75_p3872 KEGG:eco:b3304 PATRIC:32122040 EchoBASE:EB0872
EcoGene:EG10879 BioCyc:EcoCyc:EG10879-MONOMER
BioCyc:ECOL316407:JW3266-MONOMER EvolutionaryTrace:P0C018
Genevestigator:P0C018 Uniprot:P0C018
Length = 117
Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 32/92 (34%), Positives = 51/92 (55%)
Query: 21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T +++ AQVI EKA+ + T + AA+ +GK + ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
I V+ F + +YHG+V+A+ D+ REAG++
Sbjct: 86 GIKDVS-FDRSGFQYHGRVQALADAAREAGLQ 116
>TIGR_CMR|CHY_2293 [details] [associations]
symbol:CHY_2293 "ribosomal protein L18" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003735 "structural
constituent of ribosome" evidence=ISS] [GO:0006412 "translation"
evidence=ISS] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742
KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060 ProtClustDB:PRK05593
HAMAP:MF_01337_B RefSeq:YP_361102.1 ProteinModelPortal:Q3A9T2
SMR:Q3A9T2 STRING:Q3A9T2 GeneID:3727753 KEGG:chy:CHY_2293
PATRIC:21277657 BioCyc:CHYD246194:GJCN-2292-MONOMER Uniprot:Q3A9T2
Length = 122
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/92 (30%), Positives = 48/92 (52%)
Query: 21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L ++ + K++ AQ+I + LR IG ++ AA +G+++ ER K
Sbjct: 31 LNVYRSLKHIYAQIIDDVSGRTLVAASTLDPELRGKIGYGGNIEAAKAVGRLIAERAKAK 90
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
I V VF + YHG+VKA+ ++ RE G++
Sbjct: 91 GIEKV-VFDRGGYLYHGRVKALAEAAREGGLQ 121
>TIGR_CMR|CPS_0617 [details] [associations]
symbol:CPS_0617 "ribosomal protein L18" species:167879
"Colwellia psychrerythraea 34H" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412
GO:GO:0005840 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 HAMAP:MF_01337_B RefSeq:YP_267367.1
ProteinModelPortal:Q488Z7 SMR:Q488Z7 STRING:Q488Z7 GeneID:3520558
KEGG:cps:CPS_0617 PATRIC:21464561 OMA:FRFHGRV
BioCyc:CPSY167879:GI48-704-MONOMER Uniprot:Q488Z7
Length = 117
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 26 TNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
T +++ AQ+I +K + + I T +VAAA+ +GK + ER + K I +
Sbjct: 31 TPRHIYAQLIAPTGSEVIASASTLDKEVSAQIEKTGNVAAATAVGKAIAERAVAKGITKI 90
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVK 112
F + YHG+VKA+ ++ REAG++
Sbjct: 91 A-FDRSGFLYHGRVKALAEAAREAGLQ 116
>TIGR_CMR|GSU_2841 [details] [associations]
symbol:GSU_2841 "ribosomal protein L18" species:243231
"Geobacter sulfurreducens PCA" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042254 "ribosome biogenesis" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 GO:GO:0006412 GO:GO:0005840
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_953884.2 ProteinModelPortal:Q749A3 SMR:Q749A3
GeneID:2686815 KEGG:gsu:GSU2841 PATRIC:22028529
BioCyc:GSUL243231:GH27-2807-MONOMER Uniprot:Q749A3
Length = 122
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 26/84 (30%), Positives = 44/84 (52%)
Query: 28 KYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTV 87
+++ AQ+I +K S+ +V AA ++G ++ +R L K+I A V
Sbjct: 38 QHIYAQIIDDTTGTTLVSASTVQKEASESLNHCGNVEAAKRVGALIAKRALEKNI-ATVV 96
Query: 88 FLKREQRYHGKVKAVIDSLREAGV 111
F + YHG++KA+ DS RE G+
Sbjct: 97 FDRNGFLYHGRIKALADSARENGL 120
>TAIR|locus:1005716736 [details] [associations]
symbol:AT1G08845 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005576 "extracellular region" evidence=ISM] [GO:0005622
"intracellular" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR005484
Pfam:PF00861 EMBL:CP002684 GO:GO:0006412 GO:GO:0005840
GO:GO:0003735 IPI:IPI00938904 RefSeq:NP_001154322.1
UniGene:At.47036 ProteinModelPortal:F4HXR7 SMR:F4HXR7 PRIDE:F4HXR7
EnsemblPlants:AT1G08845.2 GeneID:837407 KEGG:ath:AT1G08845
OMA:SFFGVED Uniprot:F4HXR7
Length = 234
Score = 117 (46.2 bits), Expect = 6.6e-07, P = 6.6e-07
Identities = 23/97 (23%), Positives = 49/97 (50%)
Query: 15 FLKPYVLRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILG 74
+++P+ L + + ++VSA + H K +++ + D+ A IG+IL
Sbjct: 131 YMEPFTLDVFISKRFVSASLTHRVTCRQVAVAGTNSKDVKAVLRSRCDIPACMSIGRILS 190
Query: 75 ERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGV 111
ER D+ + + + ++ GK++AV+ SL + G+
Sbjct: 191 ERAKEADVYTASYTPRDQDKFEGKIRAVVQSLIDNGI 227
>TIGR_CMR|SPO_0501 [details] [associations]
symbol:SPO_0501 "ribosomal protein L18" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
[GO:0042255 "ribosome assembly" evidence=ISS] InterPro:IPR004389
InterPro:IPR005484 Pfam:PF00861 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
GO:GO:0019843 eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
OMA:FRFHGRV RefSeq:YP_165763.1 ProteinModelPortal:Q5LW42
GeneID:3196026 KEGG:sil:SPO0501 PATRIC:23374263 Uniprot:Q5LW42
Length = 119
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 31/93 (33%), Positives = 46/93 (49%)
Query: 21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H +NK +SAQ+I EK L +G +V AA K+G + ER
Sbjct: 30 LSVHRSNKNISAQLIDDVRGVTLAAASTMEKDL-GVVG-KNNVEAAKKVGAAIAERAKKA 87
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+ F + +HGKVKA+ D+ RE G+K+
Sbjct: 88 GVEEA-YFDRGGFLFHGKVKALADAAREGGLKI 119
>TIGR_CMR|BA_0126 [details] [associations]
symbol:BA_0126 "ribosomal protein L18" species:198094
"Bacillus anthracis str. Ames" [GO:0003735 "structural constituent
of ribosome" evidence=ISS] [GO:0006412 "translation" evidence=ISS]
InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 GO:GO:0019843 eggNOG:COG0256
HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR TIGRFAMs:TIGR00060
ProtClustDB:PRK05593 HAMAP:MF_01337_B RefSeq:NP_842694.1
RefSeq:YP_016731.1 RefSeq:YP_026412.1 ProteinModelPortal:Q81VR4
SMR:Q81VR4 DNASU:1087013 EnsemblBacteria:EBBACT00000013313
EnsemblBacteria:EBBACT00000016218 EnsemblBacteria:EBBACT00000019264
GeneID:1087013 GeneID:2818212 GeneID:2851571 KEGG:ban:BA_0126
KEGG:bar:GBAA_0126 KEGG:bat:BAS0126
BioCyc:BANT260799:GJAJ-137-MONOMER
BioCyc:BANT261594:GJ7F-139-MONOMER Uniprot:Q81VR4
Length = 120
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/92 (30%), Positives = 52/92 (56%)
Query: 21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L + +N+++ AQVI +K L ++ T ++ AA+K+G+ + +R + K
Sbjct: 31 LNVFRSNQHIYAQVIDDVNGVTLVSASTLDKDL--ALNGTSNIEAATKVGESVAKRAVEK 88
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
+ V VF + YHG+VKA+ ++ REAG++
Sbjct: 89 GVKEV-VFDRGGYLYHGRVKALAEAAREAGLQ 119
>TIGR_CMR|CBU_0254 [details] [associations]
symbol:CBU_0254 "ribosomal protein L18" species:227377
"Coxiella burnetii RSA 493" [GO:0003735 "structural constituent of
ribosome" evidence=ISS] InterPro:IPR004389 InterPro:IPR005484
Pfam:PF00861 GO:GO:0006412 GO:GO:0005840 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0003735 GO:GO:0019843
eggNOG:COG0256 HOGENOM:HOG000248742 KO:K02881 OMA:GNKYHGR
TIGRFAMs:TIGR00060 ProtClustDB:PRK05593 HAMAP:MF_01337_B
RefSeq:NP_819298.1 ProteinModelPortal:Q83ER0 SMR:Q83ER0
GeneID:1208135 KEGG:cbu:CBU_0254 PATRIC:17929201
BioCyc:CBUR227377:GJ7S-260-MONOMER Uniprot:Q83ER0
Length = 117
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/92 (28%), Positives = 49/92 (53%)
Query: 21 LRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H + ++ AQ+I EK +RS I ++ AA+ IGK++ +R
Sbjct: 26 LCVHRSLNHIYAQLISPRDSKVLVCASTLEKEVRSQIKHGGNIQAATAIGKLIAQRAKKA 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVK 112
+ V F + +YHG+V+A+ +++RE G++
Sbjct: 86 GVTKVA-FDRSGYKYHGRVRALAEAVREGGIE 116
>TAIR|locus:2075934 [details] [associations]
symbol:AT3G45020 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR005484 Pfam:PF00861 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AL353992 UniGene:At.1756 UniGene:At.49667 HOGENOM:HOG000248743
EMBL:BT014764 EMBL:BT014850 EMBL:AK221615 IPI:IPI00532465
PIR:T48978 RefSeq:NP_190088.1 ProteinModelPortal:Q9LXH3 SMR:Q9LXH3
EnsemblPlants:AT3G45020.1 GeneID:823637 KEGG:ath:AT3G45020
TAIR:At3g45020 eggNOG:NOG323026 InParanoid:Q9LXH3 OMA:GRSCNAK
PhylomeDB:Q9LXH3 ProtClustDB:CLSN2684628 Genevestigator:Q9LXH3
Uniprot:Q9LXH3
Length = 133
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 34/111 (30%), Positives = 56/111 (50%)
Query: 16 LKPYVLRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTR--DVAAASKIGKIL 73
LK YVLR+ + KY++A V+ E +++S+ C R + AA+ +G++L
Sbjct: 4 LKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVGEVL 63
Query: 74 GERLLLKDIP-----AVTVFLKREQRYHG-----KVKAVIDSLREAGVKLL 114
RL ++ + + +K+E G KV AVI+SLR GV L+
Sbjct: 64 AMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLI 114
>TAIR|locus:2077016 [details] [associations]
symbol:AT3G22450 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005739
"mitochondrion" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR005484
Pfam:PF00861 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 EMBL:AB022215 EMBL:AP000731
EMBL:AY924773 EMBL:DQ132687 EMBL:DQ132688 IPI:IPI00534228
RefSeq:NP_188884.1 UniGene:At.64533 ProteinModelPortal:Q9LJA1
SMR:Q9LJA1 EnsemblPlants:AT3G22450.1 GeneID:821816
KEGG:ath:AT3G22450 TAIR:At3g22450 eggNOG:NOG314890
HOGENOM:HOG000005707 InParanoid:Q9LJA1 OMA:ACVIHRV PhylomeDB:Q9LJA1
ProtClustDB:CLSN2684329 Genevestigator:Q9LJA1 Uniprot:Q9LJA1
Length = 311
Score = 111 (44.1 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 27/99 (27%), Positives = 49/99 (49%)
Query: 15 FLKPYVLRMHFTNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRDVAAASKIGKILG 74
F P+ L ++ + + V A VIH K ++ +G R+VAA + +G +L
Sbjct: 194 FHYPFCLDIYISKESVRACVIHRVTSKVVTVAHSISKDMKFDLGSRRNVAACAAVGAVLA 253
Query: 75 ERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+R L DI V ++ + GK++ V+ +L + GV +
Sbjct: 254 QRSLEDDIHDVIYTPRKGDKIEGKLQVVLQALIDNGVNV 292
>TAIR|locus:2007690 [details] [associations]
symbol:EMB3105 "EMBRYO DEFECTIVE 3105" species:3702
"Arabidopsis thaliana" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;ISS] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA;ISS] [GO:0006412
"translation" evidence=IEA;ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0042254 "ribosome biogenesis" evidence=ISS]
[GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0007389 "pattern
specification process" evidence=RCA] [GO:0008361 "regulation of
cell size" evidence=RCA] [GO:0009664 "plant-type cell wall
organization" evidence=RCA] [GO:0009832 "plant-type cell wall
biogenesis" evidence=RCA] [GO:0009926 "auxin polar transport"
evidence=RCA] [GO:0010015 "root morphogenesis" evidence=RCA]
[GO:0010075 "regulation of meristem growth" evidence=RCA]
[GO:0040007 "growth" evidence=RCA] [GO:0048653 "anther development"
evidence=RCA] InterPro:IPR004389 InterPro:IPR005484 Pfam:PF00861
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0009570 GO:GO:0006412
GO:GO:0009941 GO:GO:0005840 GO:GO:0003735 GO:GO:0019843
EMBL:AC007932 EMBL:AF336922 IPI:IPI00547186 PIR:E96523
RefSeq:NP_175268.1 UniGene:At.15427 UniGene:At.67857
ProteinModelPortal:Q9SX68 SMR:Q9SX68 STRING:Q9SX68 PaxDb:Q9SX68
PRIDE:Q9SX68 ProMEX:Q9SX68 EnsemblPlants:AT1G48350.1 GeneID:841255
KEGG:ath:AT1G48350 GeneFarm:175 TAIR:At1g48350 eggNOG:COG0256
HOGENOM:HOG000248742 InParanoid:Q9SX68 KO:K02881 OMA:GNKYHGR
PhylomeDB:Q9SX68 ProtClustDB:CLSN2682213 Genevestigator:Q9SX68
GermOnline:AT1G48350 TIGRFAMs:TIGR00060 Uniprot:Q9SX68
Length = 170
Score = 86 (35.3 bits), Expect = 0.00090, P = 0.00090
Identities = 22/89 (24%), Positives = 42/89 (47%)
Query: 26 TNKYVSAQVIHSPXXXXXXXXXXQEKALRSSIGCTRD--VAAASKIGKILGERLLLKDIP 83
+NK++ QVI ++K + T + A K+G+++ + L K I
Sbjct: 82 SNKHLYVQVIDDTKMHTLASASTKQKPISEEFDYTSGPTIEVAKKVGEVIAKSCLEKGIT 141
Query: 84 AVTVFLKREQRYHGKVKAVIDSLREAGVK 112
V F + YHG+++A+ + RE G++
Sbjct: 142 KVA-FDRGGYPYHGRIEALAAAAREHGLQ 169
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.322 0.138 0.394 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 114 104 0.00091 102 3 11 22 0.38 30
29 0.50 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 16
No. of states in DFA: 506 (54 KB)
Total size of DFA: 92 KB (2067 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.82u 0.16s 9.98t Elapsed: 00:00:00
Total cpu time: 9.82u 0.16s 9.98t Elapsed: 00:00:00
Start: Thu May 9 22:26:14 2013 End: Thu May 9 22:26:14 2013