BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033657
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B6EPU1|RL18_ALISL 50S ribosomal protein L18 OS=Aliivibrio salmonicida (strain
LFI1238) GN=rplR PE=3 SV=1
Length = 117
Score = 65.5 bits (158), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T ++ AQVI + V ++A++ EKA+R +G T + AAA IGK++ ER + K
Sbjct: 26 LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQVGNTSNKAAAVAIGKLIAERAIEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I V F + +YHG+V A+ DS REAG+K
Sbjct: 86 GITNV-AFDRSGFQYHGRVAALADSAREAGLKF 117
>sp|A8IAP8|RL18_AZOC5 50S ribosomal protein L18 OS=Azorhizobium caulinodans (strain ATCC
43989 / DSM 5975 / ORS 571) GN=rplR PE=3 SV=1
Length = 120
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T+K++ AQ+I +A+S EK LRSS+ DV AA IGK++ ER K
Sbjct: 29 LSVHRTSKHIYAQIIDDAKGETLVAASSLEKDLRSSLKTGADVEAAKAIGKLVAERATAK 88
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+ AV VF + YHG+VKA+ + RE G++
Sbjct: 89 GVTAV-VFDRGAYIYHGRVKALAEGAREGGLQF 120
>sp|C0QW11|RL18_BRAHW 50S ribosomal protein L18 OS=Brachyspira hyodysenteriae (strain
ATCC 49526 / WA1) GN=rplR PE=3 SV=1
Length = 118
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H + KYVSAQ+I +SA+SQEK L+S ++V A +IGK+L R K
Sbjct: 31 LTVHKSLKYVSAQIIDDSKGITLASASSQEKDLKSG----KNVDIAKEIGKVLATRAKEK 86
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+I V VF + YHGK+K++ D REAG+K
Sbjct: 87 NISEV-VFDRNGYIYHGKIKSLADGAREAGLKF 118
>sp|Q89A81|RL18_BUCBP 50S ribosomal protein L18 OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=rplR PE=3 SV=1
Length = 121
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 17 KPYVLRM--HFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILG 74
K +++R+ H T+K++ AQ+I S A V +SA++ EK + + + T ++ A+ IGK +
Sbjct: 24 KLHLIRLVVHRTSKHIYAQIIDSKNALVLTSASTVEKEILNLVKYTGNIHASICIGKKIA 83
Query: 75 ERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
ER L+K I V+ F + +YHG+VKA+ D+ RE+G+K
Sbjct: 84 ERALMKGIINVS-FDRSGFQYHGRVKALADAARESGLKF 121
>sp|Q5E898|RL18_VIBF1 50S ribosomal protein L18 OS=Vibrio fischeri (strain ATCC 700601 /
ES114) GN=rplR PE=3 SV=1
Length = 117
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T ++ AQVI + V ++A++ EKA+R +G T + AAA IGK++ ER + K
Sbjct: 26 LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGSTSNKAAAEAIGKLIAERAIEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I V F + +YHG+V A+ +S REAG+K
Sbjct: 86 GITNV-AFDRSGFQYHGRVAALAESAREAGLKF 117
>sp|A7IPQ4|RL18_XANP2 50S ribosomal protein L18 OS=Xanthobacter autotrophicus (strain
ATCC BAA-1158 / Py2) GN=rplR PE=3 SV=1
Length = 120
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 56/93 (60%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T++++ AQVI ++A+S EK LR+S+ D AA IGK++ ER L K
Sbjct: 29 LSVHRTSQHIYAQVIDDANGETLAAASSLEKDLRTSLKTGADTDAAKTIGKLVAERALAK 88
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+ AV VF + +HG+VKA+ + RE G++
Sbjct: 89 GVTAV-VFDRGAYIFHGRVKALAEGAREGGLQF 120
>sp|B5FG25|RL18_VIBFM 50S ribosomal protein L18 OS=Vibrio fischeri (strain MJ11) GN=rplR
PE=3 SV=1
Length = 117
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T ++ AQVI + V ++A++ EKA+R +G T + AAA IGK++ ER + K
Sbjct: 26 LVVHRTPRHTYAQVIAPNGSEVIAAASTVEKAIREQLGNTSNKAAAEAIGKLIAERAIEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I V F + +YHG+V A+ +S REAG+K
Sbjct: 86 GITNV-AFDRSGFQYHGRVAALAESAREAGLKF 117
>sp|P52863|RL18_VIBPR 50S ribosomal protein L18 OS=Vibrio proteolyticus GN=rplR PE=3 SV=1
Length = 117
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T ++V AQVI S + V ++A++ EKA+R + T +V AA +GK + ER L K
Sbjct: 26 LVVHRTPRHVYAQVIASNGSEVIAAASTVEKAIREQVKNTGNVDAAKAVGKAIAERALEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+ V F + +YHG+V A+ +S REAG+K
Sbjct: 86 GVETVA-FDRSGFQYHGRVAALAESAREAGLKF 117
>sp|A7HM36|RL18_FERNB 50S ribosomal protein L18 OS=Fervidobacterium nodosum (strain ATCC
35602 / DSM 5306 / Rt17-B1) GN=rplR PE=3 SV=1
Length = 122
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 55/88 (62%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
+ K++ AQ+I +A++ EKA++ + T ++ AA ++GK++ ER L K I V
Sbjct: 36 SEKHMYAQIIDDTKGITLVAASTVEKAMKEKLQKTWNITAAKEVGKLIAERALAKGIKEV 95
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + +YHG+VKA+ D+ REAG+K
Sbjct: 96 -VFDRGGFKYHGRVKALADAAREAGLKF 122
>sp|A5ELL1|RL18_BRASB 50S ribosomal protein L18 OS=Bradyrhizobium sp. (strain BTAi1 /
ATCC BAA-1182) GN=rplR PE=3 SV=1
Length = 120
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
++K++ AQVI +SA+S EK +RSS D+ AA +GK+L ER + I V
Sbjct: 34 SSKHIYAQVIDDQKGETLASASSMEKEMRSSGNTGADIDAAKAVGKLLAERAVKAGIKEV 93
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + YHG+VKA+ D+ RE+G+
Sbjct: 94 -VFDRGGYLYHGRVKALADAARESGLSF 120
>sp|Q3IJK1|RL18_PSEHT 50S ribosomal protein L18 OS=Pseudoalteromonas haloplanktis (strain
TAC 125) GN=rplR PE=3 SV=1
Length = 116
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 63/102 (61%), Gaps = 4/102 (3%)
Query: 14 NFLKPYVLRM--HFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGK 71
N+++ R+ H T +++ AQV+ + TV ++A++ EKA+ ++ T +VAAA +GK
Sbjct: 17 NYIEQGTTRLVIHRTPRHIYAQVV-TAEGTVLAAASTVEKAICETVKGTGNVAAAQAVGK 75
Query: 72 ILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+ ER K I + F + +YHG+VKA+ D+ REAG++
Sbjct: 76 AVAERAADKGIEKI-AFDRSGFKYHGRVKALADAAREAGLQF 116
>sp|B8D833|RL18_BUCAT 50S ribosomal protein L18 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain Tuc7) GN=rplR PE=3 SV=1
Length = 122
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T++++ AQ+I S A V A++ E+ + S+ T + AA+KIGKI+ ER L K
Sbjct: 31 LVVHRTSRHMYAQIISSKEAKVLVFASTLERKINCSLKYTGNKEAAAKIGKIIAERALSK 90
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I V+ F + +YHG+V+ + +S RE G+K
Sbjct: 91 GISHVS-FDRSGFKYHGRVQVLAESAREVGLKF 122
>sp|P57575|RL18_BUCAI 50S ribosomal protein L18 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=rplR PE=3 SV=1
Length = 122
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T++++ AQ+I S A V A++ E+ + S+ T + AA+KIGKI+ ER L K
Sbjct: 31 LVVHRTSRHMYAQIISSKEAKVLVFASTLERKINCSLKYTGNKEAAAKIGKIIAERALSK 90
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I V+ F + +YHG+V+ + +S RE G+K
Sbjct: 91 GISHVS-FDRSGFKYHGRVQVLAESAREVGLKF 122
>sp|B8D9T1|RL18_BUCA5 50S ribosomal protein L18 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain 5A) GN=rplR PE=3 SV=1
Length = 122
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T++++ AQ+I S A V A++ E+ + S+ T + AA+KIGKI+ ER L K
Sbjct: 31 LVVHRTSRHMYAQIISSKEAKVLVFASTLERKINCSLKYTGNKEAAAKIGKIIAERALSK 90
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I V+ F + +YHG+V+ + +S RE G+K
Sbjct: 91 GISHVS-FDRSGFKYHGRVQVLAESAREVGLKF 122
>sp|A4YSK8|RL18_BRASO 50S ribosomal protein L18 OS=Bradyrhizobium sp. (strain ORS278)
GN=rplR PE=3 SV=1
Length = 120
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 10/104 (9%)
Query: 10 PKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKI 69
P+LS F ++K++ AQVI +SA+S EK +RS+ D+ AA +
Sbjct: 27 PRLSVFR---------SSKHIYAQVIDDQKGETIASASSMEKEMRSAGNTGADIDAAKAV 77
Query: 70 GKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
GK+L ER + I V VF + YHG+VKA+ D+ RE+G+
Sbjct: 78 GKLLAERAVKAGIKEV-VFDRGGYLYHGRVKALADAARESGLSF 120
>sp|B0C1E8|RL18_ACAM1 50S ribosomal protein L18 OS=Acaryochloris marina (strain MBIC
11017) GN=rplR PE=3 SV=1
Length = 118
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 56/88 (63%), Gaps = 3/88 (3%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
+N+++ AQVI ++A++ E L+SS G T D A++ +GK++ ER + K I AV
Sbjct: 34 SNQHIYAQVIDDAQQHTLAAASTVESDLKSSSGATCD--ASTAVGKLVAERAIEKGIKAV 91
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + YHG+VKA+ D+ REAG++
Sbjct: 92 -VFDRGGNLYHGRVKALADAAREAGLEF 118
>sp|A4SUX7|RL18_POLSQ 50S ribosomal protein L18 OS=Polynucleobacter necessarius subsp.
asymbioticus (strain DSM 18221 / CIP 109841 /
QLW-P1DMWA-1) GN=rplR PE=3 SV=1
Length = 117
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 58/89 (65%), Gaps = 3/89 (3%)
Query: 26 TNKYVSAQVIHSPTAT-VASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPA 84
+N ++SAQV +SP T V ++A++ EK LR +I + AA++IGK++ ER + +
Sbjct: 31 SNTHISAQV-YSPCGTKVVAAASTMEKDLRQAIKNGGNAQAAAQIGKLVAERAVKAGVVD 89
Query: 85 VTVFLKREQRYHGKVKAVIDSLREAGVKL 113
V F + RYHG++KA+ ++ REAG+K
Sbjct: 90 V-AFDRSGHRYHGRIKALAEAAREAGLKF 117
>sp|B1LBM4|RL18_THESQ 50S ribosomal protein L18 OS=Thermotoga sp. (strain RQ2) GN=rplR
PE=3 SV=1
Length = 122
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
+NK++ AQ+I SA++ + LR + T +V AA ++G ++G+R L K I V
Sbjct: 36 SNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTWNVEAAKEVGLLIGKRALEKGIKKV 95
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + +YHG+VKA+ D REAG++
Sbjct: 96 -VFDRGGYKYHGRVKALADGAREAGLEF 122
>sp|A5IM99|RL18_THEP1 50S ribosomal protein L18 OS=Thermotoga petrophila (strain RKU-1 /
ATCC BAA-488 / DSM 13995) GN=rplR PE=3 SV=1
Length = 122
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
+NK++ AQ+I SA++ + LR + T +V AA ++G ++G+R L K I V
Sbjct: 36 SNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTWNVEAAKEVGLLIGKRALEKGIKKV 95
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + +YHG+VKA+ D REAG++
Sbjct: 96 -VFDRGGYKYHGRVKALADGAREAGLEF 122
>sp|Q9ZAE3|RL18_THEMA 50S ribosomal protein L18 OS=Thermotoga maritima (strain ATCC 43589
/ MSB8 / DSM 3109 / JCM 10099) GN=rplR PE=3 SV=2
Length = 122
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
+NK++ AQ+I SA++ + LR + T +V AA ++G ++G+R L K I V
Sbjct: 36 SNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTWNVEAAKEVGLLIGKRALEKGIKKV 95
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + +YHG+VKA+ D REAG++
Sbjct: 96 -VFDRGGYKYHGRVKALADGAREAGLEF 122
>sp|B0UX30|RL18_HAES2 50S ribosomal protein L18 OS=Haemophilus somnus (strain 2336)
GN=rplR PE=3 SV=1
Length = 117
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T++++ AQVI + V ++A++ EKA+ + T + AA+ +GKI+ ER L K
Sbjct: 26 LVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNKDAAAVVGKIVAERALEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I +V F + +YHG+V+++ D+ REAG++
Sbjct: 86 GIKSVA-FDRSGFKYHGRVQSLADAAREAGLQF 117
>sp|Q0I146|RL18_HAES1 50S ribosomal protein L18 OS=Haemophilus somnus (strain 129Pt)
GN=rplR PE=3 SV=1
Length = 117
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 60/93 (64%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T++++ AQVI + V ++A++ EKA+ + T + AA+ +GKI+ ER L K
Sbjct: 26 LVIHRTSRHIYAQVIAPNGSEVLATASTVEKAISEQVKYTGNKDAAAVVGKIVAERALEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I +V F + +YHG+V+++ D+ REAG++
Sbjct: 86 GIKSVA-FDRSGFKYHGRVQSLADAAREAGLQF 117
>sp|B5YDV9|RL18_DICT6 50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC
35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1
Length = 122
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 28 KYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTV 87
+Y+ AQ+I SA+S EK +RS + T+++ AA +G+++ +R L K I V V
Sbjct: 38 RYIYAQIIDDTKGHTLVSASSLEKEIRSQLKSTKNIEAAKLVGEVIAKRALEKGIKKV-V 96
Query: 88 FLKREQRYHGKVKAVIDSLREAGVKL 113
F + YHGKVKA+ DS R AG++
Sbjct: 97 FDRGGFLYHGKVKALADSARAAGLEF 122
>sp|B8E1E9|RL18_DICTD 50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 /
DSM 6724) GN=rplR PE=3 SV=1
Length = 122
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 28 KYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAVTV 87
+Y+ AQ+I +A+S EK LRS + T+++ AA +G+++ +R L K I V V
Sbjct: 38 RYIYAQIIDDTKGHTLVAASSLEKELRSQLKSTKNIEAAKLVGEVIAKRALEKGIKRV-V 96
Query: 88 FLKREQRYHGKVKAVIDSLREAGVKL 113
F + YHGKVKA+ DS R AG++
Sbjct: 97 FDRGGFLYHGKVKALADSARAAGLEF 122
>sp|B6IRS2|RL18_RHOCS 50S ribosomal protein L18 OS=Rhodospirillum centenum (strain ATCC
51521 / SW) GN=rplR PE=3 SV=1
Length = 120
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
++K++ AQ+I ++A+S +K LR + D+ AA +GK++ ER K + AV
Sbjct: 34 SSKHIYAQIIDDTAGHTLAAASSLDKDLREGLKTGADIDAAKAVGKLIAERATAKGVTAV 93
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + +HG+VKA+ D+ REAG++
Sbjct: 94 -VFDRGAYLFHGRVKALADAAREAGLQF 120
>sp|Q4ZMR0|RL18_PSEU2 50S ribosomal protein L18 OS=Pseudomonas syringae pv. syringae
(strain B728a) GN=rplR PE=3 SV=1
Length = 116
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H +++++ AQVI + + V +SA++ +K LR G T ++ AA+K+GK++ ER
Sbjct: 27 LCVHRSSQHIYAQVISADGSKVLASASTLDKELRD--GATGNIDAATKVGKLVAERAKAA 84
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+ V F + +YHG+VKA+ D+ RE G++
Sbjct: 85 GVSQVA-FDRSGFKYHGRVKALADAAREGGLEF 116
>sp|Q889V5|RL18_PSESM 50S ribosomal protein L18 OS=Pseudomonas syringae pv. tomato
(strain DC3000) GN=rplR PE=3 SV=1
Length = 116
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H +++++ AQVI + + V +SA++ +K LR G T ++ AA+K+GK++ ER
Sbjct: 27 LCVHRSSQHIYAQVISADGSKVLASASTLDKELRD--GATGNIDAATKVGKLVAERAKAA 84
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+ V F + +YHG+VKA+ D+ RE G++
Sbjct: 85 GVSQVA-FDRSGFKYHGRVKALADAAREGGLEF 116
>sp|Q48D52|RL18_PSE14 50S ribosomal protein L18 OS=Pseudomonas syringae pv. phaseolicola
(strain 1448A / Race 6) GN=rplR PE=3 SV=1
Length = 116
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 59/93 (63%), Gaps = 3/93 (3%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H +++++ AQVI + + V +SA++ +K LR G T ++ AA+K+GK++ ER
Sbjct: 27 LCVHRSSQHIYAQVISADGSKVLASASTLDKELRD--GATGNIDAATKVGKLVAERAKAA 84
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+ V F + +YHG+VKA+ D+ RE G++
Sbjct: 85 GVSQVA-FDRSGFKYHGRVKALADAAREGGLEF 116
>sp|B8F6Q5|RL18_HAEPS 50S ribosomal protein L18 OS=Haemophilus parasuis serovar 5 (strain
SH0165) GN=rplR PE=3 SV=1
Length = 117
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 59/93 (63%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T +++ AQVI + V ++A++ EK ++ + T + AA+ +GKI+ ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLAAASTVEKVIKEQVKYTGNKEAAAVVGKIVAERALEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I AV F + +YHG+V+++ D+ REAG++
Sbjct: 86 GIKAVA-FDRSGFKYHGRVQSLADAAREAGLQF 117
>sp|A6T3I8|RL18_JANMA 50S ribosomal protein L18 OS=Janthinobacterium sp. (strain
Marseille) GN=rplR PE=3 SV=1
Length = 120
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 6/102 (5%)
Query: 16 LKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSI----GCTRDVAAASKIGK 71
LK L +H TN ++ A +I P ATV +SA++ E +R + G +VAAA+ +GK
Sbjct: 21 LKVNRLAVHRTNLHIYASII-GPDATVLASASTLEAEVRQELAGQSGKGGNVAAAALVGK 79
Query: 72 ILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
+ E+ L I V F + RYHG+VKAV ++ REAG+K
Sbjct: 80 RVAEKALKAGIAEVA-FDRSGFRYHGRVKAVAEAAREAGLKF 120
>sp|P46899|RL18_BACSU 50S ribosomal protein L18 OS=Bacillus subtilis (strain 168) GN=rplR
PE=1 SV=1
Length = 120
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 10 PKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKI 69
KLS + L + +NK++ AQ+I +SA++ +K L ++ T D +AA+K+
Sbjct: 20 AKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDL--NVESTGDTSAATKV 77
Query: 70 GKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
G+++ +R K I V VF + YHG+VKA+ D+ REAG+K
Sbjct: 78 GELVAKRAAEKGISDV-VFDRGGYLYHGRVKALADAAREAGLKF 120
>sp|B9K8A2|RL18_THENN 50S ribosomal protein L18 OS=Thermotoga neapolitana (strain ATCC
49049 / DSM 4359 / NS-E) GN=rplR PE=3 SV=1
Length = 122
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
+NK++ AQ+I SA++ + LR + T ++ AA ++G ++G+R + K I V
Sbjct: 36 SNKHIYAQIIDDTIGHTLVSASTLDPELREKLQKTWNIEAAKEVGLLIGKRAIEKGIKKV 95
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + +YHG+VKA+ D REAG++
Sbjct: 96 -VFDRGGYKYHGRVKALADGAREAGLEF 122
>sp|A1WVA6|RL18_HALHL 50S ribosomal protein L18 OS=Halorhodospira halophila (strain DSM
244 / SL1) GN=rplR PE=3 SV=1
Length = 117
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 57/95 (60%), Gaps = 1/95 (1%)
Query: 19 YVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLL 78
Y L +H T +++ AQV AT ++A++ E ALR T +V+AA ++G+++ ER
Sbjct: 24 YRLSVHRTPRHIYAQVQQPDGATTLAAASTVEPALRQRSEGTGNVSAAQEVGRLIAERAK 83
Query: 79 LKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I V F + +YHG+V+A+ ++ REAG+K
Sbjct: 84 AAGIEQV-AFDRGGYQYHGRVQALAEAAREAGLKF 117
>sp|Q89JA0|RL18_BRAJA 50S ribosomal protein L18 OS=Bradyrhizobium japonicum (strain USDA
110) GN=rplR PE=3 SV=1
Length = 120
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
++K++ AQVI +SA+S EK++R D+ AA +GK+L ER K + V
Sbjct: 34 SSKHIYAQVIDDLKGETLASASSLEKSMRDGGKTGADIDAAKAVGKLLAERAAEKGVKEV 93
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGV 111
VF + YHG+VKA+ D+ RE+G+
Sbjct: 94 -VFDRGSYLYHGRVKALADAARESGL 118
>sp|A7Z0Q4|RL18_BACA2 50S ribosomal protein L18 OS=Bacillus amyloliquefaciens (strain
FZB42) GN=rplR PE=3 SV=1
Length = 120
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/104 (35%), Positives = 61/104 (58%), Gaps = 3/104 (2%)
Query: 10 PKLSNFLKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKI 69
KLS + L + +NK++ AQ+I +SA++ +K L ++ T D AAA+K+
Sbjct: 20 AKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDL--NVESTGDSAAAAKV 77
Query: 70 GKILGERLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
G+++ +R K + V VF + YHG+VKA+ D+ REAG+K
Sbjct: 78 GELVAKRASEKGVSDV-VFDRGGYLYHGRVKALADAAREAGLKF 120
>sp|Q3SSV0|RL18_NITWN 50S ribosomal protein L18 OS=Nitrobacter winogradskyi (strain
Nb-255 / ATCC 25391) GN=rplR PE=3 SV=1
Length = 120
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
++K++ AQVI +SA+S EKA+R + D+ AA +GK++ ER + + V
Sbjct: 34 SSKHIYAQVIDDLKGETLASASSLEKAMRDAGNTGADIDAAKAVGKLVAERAVKNGVKEV 93
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGV 111
VF + YHG+VKA+ D+ RE+G+
Sbjct: 94 -VFDRGGYLYHGRVKALADAARESGL 118
>sp|C6DG58|RL18_PECCP 50S ribosomal protein L18 OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=rplR PE=3 SV=1
Length = 117
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T +++ AQVI + V +A++ EKA+ + T + AAS IGK + ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKSTGNKDAASAIGKAIAERALEK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I V+ F + +YHG+V+A+ D+ REAG++
Sbjct: 86 GIKDVS-FDRSGFQYHGRVQALADAAREAGLQF 117
>sp|B1XSR7|RL18_POLNS 50S ribosomal protein L18 OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=rplR PE=3 SV=1
Length = 117
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Query: 26 TNKYVSAQVIHSPTAT-VASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPA 84
+N ++SAQV +SP T V ++A++ EK LR +I AA +IGK++ ER + +
Sbjct: 31 SNSHISAQV-YSPCGTKVVAAASTMEKDLRQAIKNGSYAEAAKQIGKLVAERAVKAGVVD 89
Query: 85 VTVFLKREQRYHGKVKAVIDSLREAGVKL 113
V F + RYHG++KA+ ++ REAG+K
Sbjct: 90 V-AFDRSGHRYHGRIKALAEAAREAGLKF 117
>sp|B0BSU7|RL18_ACTPJ 50S ribosomal protein L18 OS=Actinobacillus pleuropneumoniae
serotype 3 (strain JL03) GN=rplR PE=3 SV=1
Length = 117
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T +++ AQVI + V ++A++ EK ++ + T + AA+ +GK++ ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLAAASTVEKVIKEQVKYTGNKDAAAVVGKLVAERALAK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I AV F + +YHG+V+ + D+ REAG++
Sbjct: 86 GIQAVA-FDRSGFKYHGRVQVLADAAREAGLQF 117
>sp|B3GZ27|RL18_ACTP7 50S ribosomal protein L18 OS=Actinobacillus pleuropneumoniae
serotype 7 (strain AP76) GN=rplR PE=3 SV=1
Length = 117
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T +++ AQVI + V ++A++ EK ++ + T + AA+ +GK++ ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLAAASTVEKVIKEQVKYTGNKDAAAVVGKLVAERALAK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I AV F + +YHG+V+ + D+ REAG++
Sbjct: 86 GIQAVA-FDRSGFKYHGRVQVLADAAREAGLQF 117
>sp|A3N373|RL18_ACTP2 50S ribosomal protein L18 OS=Actinobacillus pleuropneumoniae
serotype 5b (strain L20) GN=rplR PE=3 SV=1
Length = 117
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 1/93 (1%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLK 80
L +H T +++ AQVI + V ++A++ EK ++ + T + AA+ +GK++ ER L K
Sbjct: 26 LVVHRTPRHIYAQVIAPNGSEVLAAASTVEKVIKEQVKYTGNKDAAAVVGKLVAERALAK 85
Query: 81 DIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I AV F + +YHG+V+ + D+ REAG++
Sbjct: 86 GIQAVA-FDRSGFKYHGRVQVLADAAREAGLQF 117
>sp|A9BG02|RL18_PETMO 50S ribosomal protein L18 OS=Petrotoga mobilis (strain DSM 10674 /
SJ95) GN=rplR PE=3 SV=1
Length = 122
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
+ K++ AQ+I +SA++ +K L+ + T D AA ++GK++ E+ K I +
Sbjct: 36 SQKHIYAQIIDDTKGVTLASASTTQKQLKEKLEKTWDENAAKEVGKLIAEKAKEKGITEI 95
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + +YHGKVKA+ ++ RE G+K
Sbjct: 96 -VFDRSGYKYHGKVKALAEAARETGLKF 122
>sp|Q8XV28|RL18_RALSO 50S ribosomal protein L18 OS=Ralstonia solanacearum (strain
GMI1000) GN=rplR PE=3 SV=1
Length = 118
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSI-GCTRDVAAASKIGKILGERLLL 79
L +H TN ++ AQV V +SA++ E +R + G + AAA+ +GK + E+
Sbjct: 26 LAVHRTNLHIYAQVFSEDGTKVLASASTAEAEVRKELNGNGGNTAAATLVGKRIAEKAKA 85
Query: 80 KDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I AV F + RYHG+VKA+ D+ REAG+K
Sbjct: 86 AGIEAV-AFDRSGFRYHGRVKALADAAREAGLKF 118
>sp|Q37M27|RL18_RHOPS 50S ribosomal protein L18 OS=Rhodopseudomonas palustris (strain
BisB5) GN=rplR PE=3 SV=1
Length = 120
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 53/88 (60%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
++K++ AQVI +SA+S EK+LR + ++ AA +GK+L ER + + + V
Sbjct: 34 SSKHIYAQVIDDLKGETLASASSLEKSLRDAGNTGANIDAAKAVGKLLAERAVQQGVKEV 93
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + YHG+VKA+ D+ RE+G+
Sbjct: 94 -VFDRGGYLYHGRVKALADAARESGLSF 120
>sp|B2UEK3|RL18_RALPJ 50S ribosomal protein L18 OS=Ralstonia pickettii (strain 12J)
GN=rplR PE=3 SV=1
Length = 118
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 21 LRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSI-GCTRDVAAASKIGKILGERLLL 79
L +H TN ++ AQV V +SA++ E +R + G + AAA+ +GK + E+
Sbjct: 26 LAVHRTNLHIYAQVFSEDGTKVLASASTAEAEVRKELNGNGGNTAAATLVGKRIAEKAKA 85
Query: 80 KDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
I AV F + RYHG+VKA+ D+ REAG+K
Sbjct: 86 AGIEAV-AFDRSGFRYHGRVKALADAAREAGLKF 118
>sp|Q2RQX6|RL18_RHORT 50S ribosomal protein L18 OS=Rhodospirillum rubrum (strain ATCC
11170 / NCIB 8255) GN=rplR PE=3 SV=1
Length = 120
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
+NK++ AQ+I SA++ +K LR ++ D AAA+++GK+L ER V
Sbjct: 34 SNKHMYAQIIDDAEGRTLVSASTVDKELRGNLTKGGDKAAAAEVGKLLAERAKAAGYTEV 93
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + +YHG+V+A+ D+ REAG+
Sbjct: 94 -VFDRGGYKYHGRVQALADAAREAGLSF 120
>sp|A4XZ74|RL18_PSEMY 50S ribosomal protein L18 OS=Pseudomonas mendocina (strain ymp)
GN=rplR PE=3 SV=1
Length = 116
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 61/98 (62%), Gaps = 3/98 (3%)
Query: 16 LKPYVLRMHFTNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGE 75
L+ L ++ +++++ AQVI + + V +SA++ +KALR G T +V AA K+G+++ E
Sbjct: 22 LEAVRLCVYRSSQHIYAQVISADGSKVLASASTLDKALRD--GATGNVDAAKKVGQLVAE 79
Query: 76 RLLLKDIPAVTVFLKREQRYHGKVKAVIDSLREAGVKL 113
R + V F + +YHG+VKA+ D+ RE G++
Sbjct: 80 RAKAAGVTQVA-FDRSGFKYHGRVKALADAAREGGLEF 116
>sp|Q211G4|RL18_RHOPB 50S ribosomal protein L18 OS=Rhodopseudomonas palustris (strain
BisB18) GN=rplR PE=3 SV=1
Length = 120
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
++K++ AQVI +SA+S EKA+R + ++ AA +GK+L ER + + V
Sbjct: 34 SSKHIYAQVIDDLKGETLASASSLEKAMRDTGNTGANIDAAKAVGKLLAERAVKNGVTEV 93
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGV 111
VF + YHG++KA+ D+ RE+G+
Sbjct: 94 -VFDRGGYLYHGRIKALADAARESGL 118
>sp|Q07KN4|RL18_RHOP5 50S ribosomal protein L18 OS=Rhodopseudomonas palustris (strain
BisA53) GN=rplR PE=3 SV=1
Length = 120
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
++K++ AQVI +SA+S EK +R + D+ AA +GK+L ER + + V
Sbjct: 34 SSKHIYAQVIDDLKGVTLASASSLEKTMREAGNTGADIDAAKAVGKLLAERAVKNGVKEV 93
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + YHG++KA+ D+ RE+G+
Sbjct: 94 -VFDRGGYLYHGRIKALADAARESGLSF 120
>sp|B3QBW4|RL18_RHOPT 50S ribosomal protein L18 OS=Rhodopseudomonas palustris (strain
TIE-1) GN=rplR PE=3 SV=1
Length = 120
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 52/88 (59%), Gaps = 1/88 (1%)
Query: 26 TNKYVSAQVIHSPTATVASSATSQEKALRSSIGCTRDVAAASKIGKILGERLLLKDIPAV 85
++K++ AQVI +SA+S EK +R + ++ AA +GK++ ER + K + V
Sbjct: 34 SSKHIYAQVIDDAKGETLASASSLEKTMRDAGNTGANIDAAKAVGKLVAERAVEKGVKEV 93
Query: 86 TVFLKREQRYHGKVKAVIDSLREAGVKL 113
VF + YHG+VKA+ D+ RE+G+
Sbjct: 94 -VFDRGGYLYHGRVKALADAARESGLSF 120
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.372
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,565,277
Number of Sequences: 539616
Number of extensions: 1187119
Number of successful extensions: 5047
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 298
Number of HSP's that attempted gapping in prelim test: 4158
Number of HSP's gapped (non-prelim): 750
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)