BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033658
         (114 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2DIQ|A Chain A, Solution Structure Of The Tudor Domain Of Tudor And Kh
          Domain Containing Protein
          Length = 110

 Score = 30.0 bits (66), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 19/22 (86%)

Query: 40 LINEINQNHESKVPDNLTRNVG 61
          L+NE+ Q++E+ VP++LT +VG
Sbjct: 15 LVNEMTQHYENSVPEDLTVHVG 36


>pdb|3FDR|A Chain A, Crystal Structure Of Tdrd2
          Length = 94

 Score = 30.0 bits (66), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 11/22 (50%), Positives = 19/22 (86%)

Query: 40 LINEINQNHESKVPDNLTRNVG 61
          L+NE+ Q++E+ VP++LT +VG
Sbjct: 10 LVNEMTQHYENSVPEDLTVHVG 31


>pdb|1VLP|A Chain A, Crystal Structure Of A Putative Nicotinate
           Phosphoribosyltransferase (Yor209c, Npt1) From
           Saccharomyces Cerevisiae At 1.75 A Resolution
 pdb|1VLP|B Chain B, Crystal Structure Of A Putative Nicotinate
           Phosphoribosyltransferase (Yor209c, Npt1) From
           Saccharomyces Cerevisiae At 1.75 A Resolution
 pdb|1VLP|C Chain C, Crystal Structure Of A Putative Nicotinate
           Phosphoribosyltransferase (Yor209c, Npt1) From
           Saccharomyces Cerevisiae At 1.75 A Resolution
 pdb|1VLP|D Chain D, Crystal Structure Of A Putative Nicotinate
           Phosphoribosyltransferase (Yor209c, Npt1) From
           Saccharomyces Cerevisiae At 1.75 A Resolution
          Length = 441

 Score = 26.2 bits (56), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 43  EINQNHESKVPDNLTRNVG 61
           E+N NH  K+ DNL +N G
Sbjct: 394 EVNGNHAIKISDNLGKNXG 412


>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
          Ind E804
          Length = 324

 Score = 25.4 bits (54), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 17/35 (48%)

Query: 34 LDQNRLLINEINQNHESKVPDNLTRNVGLIKELNN 68
          L  N + + EI   HE   P    R V L+K+L +
Sbjct: 25 LTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKH 59


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.136    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,565,163
Number of Sequences: 62578
Number of extensions: 80792
Number of successful extensions: 269
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 13
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)