BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033658
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q570U6|EF4L4_ARATH Protein ELF4-LIKE 4 OS=Arabidopsis thaliana GN=EFL4 PE=2 SV=1
Length = 114
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 88/114 (77%), Positives = 99/114 (86%)
Query: 1 MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
MEGD+ SG G+ +DGK+LQ+F+KSF VQDILDQNRLLINEINQNHESK PDNL RNV
Sbjct: 1 MEGDVLSGFGDRHNMDGKLLQSFQKSFVDVQDILDQNRLLINEINQNHESKQPDNLGRNV 60
Query: 61 GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
GLIKELNNNIRRV SLY DLS SFARSV++SSEGES+ L+SDGKA+QKR RSG
Sbjct: 61 GLIKELNNNIRRVASLYGDLSHSFARSVDASSEGESSGTLKSDGKANQKRFRSG 114
>sp|Q94BS8|EF4L2_ARATH Protein ELF4-LIKE 2 OS=Arabidopsis thaliana GN=EFL2 PE=2 SV=1
Length = 119
Score = 169 bits (429), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 97/115 (84%), Gaps = 1/115 (0%)
Query: 1 MEGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNV 60
MEGD++SG G Q+DGK+LQ F+KSF QVQDILDQNRLLINEINQNHESK D+L RNV
Sbjct: 5 MEGDVYSGFGERYQMDGKLLQNFQKSFVQVQDILDQNRLLINEINQNHESKQADHLGRNV 64
Query: 61 GLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKA-SQKRIRSG 114
GLI+ELNNNIR V SLY DLS SFARSV++SSEGES L+SDGKA +QKR RSG
Sbjct: 65 GLIRELNNNIRTVASLYGDLSHSFARSVDASSEGESTGTLKSDGKANNQKRFRSG 119
>sp|Q8S8F5|EF4L3_ARATH Protein ELF4-LIKE 3 OS=Arabidopsis thaliana GN=EFL3 PE=3 SV=1
Length = 109
Score = 145 bits (366), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/115 (65%), Positives = 94/115 (81%), Gaps = 7/115 (6%)
Query: 1 MEGDIFS-GIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRN 59
MEGD S +G+G Q+DGK+LQTF KSF QVQ+ILD NRLLINEINQNHESK+PDNL RN
Sbjct: 1 MEGDTISRMMGSGVQMDGKILQTFEKSFVQVQNILDHNRLLINEINQNHESKIPDNLGRN 60
Query: 60 VGLIKELNNNIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKASQKRIRSG 114
VGLI+ELNNN+RRV LY DLS++F++S+E+SSEG+S S+G+ + +RIR
Sbjct: 61 VGLIRELNNNVRRVAHLYVDLSNNFSKSMEASSEGDS-----SEGRGN-RRIRPA 109
>sp|O04211|ELF4_ARATH Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1
SV=1
Length = 111
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/70 (47%), Positives = 55/70 (78%)
Query: 16 DGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVS 75
D + + ++F QVQ +LD+NR LI ++N NH+S++ DN+++NV LI+ELN NI +VV+
Sbjct: 22 DPAMWENLDRNFRQVQSVLDRNRSLIQQVNDNHQSRMADNMSKNVALIQELNGNISKVVN 81
Query: 76 LYADLSSSFA 85
+Y+DL++SF+
Sbjct: 82 MYSDLNTSFS 91
>sp|O80877|EF4L1_ARATH Protein ELF4-LIKE 1 OS=Arabidopsis thaliana GN=EFL1 PE=2 SV=1
Length = 125
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 52/74 (70%)
Query: 16 DGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVS 75
D +V T F + Q LDQNR LI +N+NH S++PDN++RNVGLI E+N NI +V+
Sbjct: 34 DVEVWDTLSNGFKRAQLYLDQNRDLIQRVNENHMSRIPDNVSRNVGLINEINGNISQVME 93
Query: 76 LYADLSSSFARSVE 89
+Y+DLS +FA+ +
Sbjct: 94 IYSDLSLNFAKKFD 107
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13
PE=2 SV=1
Length = 239
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 9 IGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNN 68
+ +GT + + F K G+V ++ +L + I N S VP+ + LN+
Sbjct: 95 VSDGTTSKEVLAEMFNKEAGRV---IEDFKLRVVYIPANPPSPVPEGSEEGNSPMASLND 151
Query: 69 NIRRVVSLYADLSSSFARSVESSSEGESAAALRSDGKAS 107
+ SL+ D+S +F + E SSE S + ++ K S
Sbjct: 152 IASQSASLFDDVSRTFEETSEKSSEAWSMISKLTEEKTS 190
>sp|Q87ST4|SURA_VIBPA Chaperone SurA OS=Vibrio parahaemolyticus serotype O3:K6 (strain
RIMD 2210633) GN=surA PE=3 SV=1
Length = 427
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/84 (22%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 17 GKVLQTFRKSFG----QVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRR 72
G ++ FR G +++D+ + + E+N H P + + G K+LN +RR
Sbjct: 249 GSIIGPFRSGVGFHILKIEDVKGLETVAVTEVNARHILIKPTVILSDEGAKKQLNEFVRR 308
Query: 73 VV---SLYADLSSSFARSVESSSE 93
+ + +A L+S +++ S+++
Sbjct: 309 IKAGEATFAQLASQYSQDPGSAAQ 332
>sp|Q9E6M4|PRIM_GAHVM DNA primase OS=Gallid herpesvirus 2 (strain Chicken/Md5/ATCC
VR-987) GN=MDV066 PE=3 SV=1
Length = 1074
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 6 FSGIGNGTQVDGKVLQTFR---KSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGL 62
F+GI V K L T + +G D +D + L+ + NQN+ + +P + +R+ G+
Sbjct: 450 FTGICECASVILKRLDTLEMKLQKYGWPSDRVDGSNLMAD--NQNNSTLIPYDKSRSSGM 507
Query: 63 IKELNNNIRR 72
I E +N R
Sbjct: 508 ILECSNTHSR 517
>sp|B3EER8|ACCA_CHLL2 Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Chlorobium limicola (strain DSM 245 / NBRC 103803)
GN=accA PE=3 SV=1
Length = 333
Score = 29.6 bits (65), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 17 GKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSL 76
GKV+ F K +++ L++ R+ + + + + D L R++ L+++ + +RR S+
Sbjct: 3 GKVILDFEKPLFELEAKLEEMRVCLRGSAREQDQQDADMLHRDIALLEQKVDALRR--SI 60
Query: 77 YADLS 81
Y +L+
Sbjct: 61 YKNLT 65
>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH
PE=1 SV=2
Length = 561
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 12/24 (50%), Positives = 20/24 (83%)
Query: 40 LINEINQNHESKVPDNLTRNVGLI 63
L+NE+ Q++E+ VP++LT +VG I
Sbjct: 336 LVNEMTQHYENSVPEDLTVHVGDI 359
>sp|A1WVC9|RPOB_HALHL DNA-directed RNA polymerase subunit beta OS=Halorhodospira
halophila (strain DSM 244 / SL1) GN=rpoB PE=3 SV=1
Length = 1381
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 2 EGDIFSGIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNL-TRNV 60
+G F+G+GN + +++ +G+ DILD R LI+ N N + D+L R V
Sbjct: 426 DGKYFAGLGNADKEADDLIE----QYGESSDILDVLRELIDIRNGNGQVDDIDHLGNRRV 481
Query: 61 GLIKELNNNIRRV 73
+ E+ N+ RV
Sbjct: 482 RSVGEMAENVFRV 494
>sp|Q9ZED6|Y006_RICPR Uncharacterized protein RP006 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP006 PE=4 SV=1
Length = 706
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 43 EINQNHESKVPDNLTRNVGLIKELNNNIRRVV-SLYADLSSSFARSVE 89
EI QN + + D+ RNVGL+K L N +V+ + Y D+ SV+
Sbjct: 570 EIPQNKKIIIIDSKYRNVGLLKILKENKNKVIFATYPDIKKHKLTSVD 617
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.129 0.339
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,704,739
Number of Sequences: 539616
Number of extensions: 1281552
Number of successful extensions: 4702
Number of sequences better than 100.0: 47
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 4671
Number of HSP's gapped (non-prelim): 59
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)