Query 033658
Match_columns 114
No_of_seqs 64 out of 66
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 07:32:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033658.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033658hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wh0_Q Pkcev3, protein kinase 62.5 3.7 0.00013 23.8 1.6 14 62-75 14-27 (31)
2 1wr6_A ADP-ribosylation factor 60.6 17 0.0006 25.1 5.1 60 10-81 30-89 (111)
3 2cp8_A NEXT to BRCA1 gene 1 pr 36.7 11 0.00037 23.8 0.8 20 57-76 25-44 (54)
4 1oxz_A ADP-ribosylation factor 36.0 97 0.0033 23.2 6.1 62 10-83 98-160 (186)
5 3kv9_A JMJC domain-containing 32.0 32 0.0011 28.6 3.1 32 43-75 355-386 (397)
6 1naf_A ADP-ribosylation factor 29.5 96 0.0033 22.7 5.0 61 11-83 83-144 (158)
7 3k3o_A PHF8, PHD finger protei 29.1 33 0.0011 28.3 2.7 30 44-74 328-357 (371)
8 1o3x_A ADP-ribosylation factor 28.6 95 0.0032 22.1 4.8 59 11-81 74-133 (140)
9 4afl_A P29ING4, inhibitor of g 27.3 10 0.00035 25.0 -0.5 21 51-71 15-35 (104)
10 2di4_A Zinc protease, cell div 27.2 53 0.0018 25.2 3.4 33 14-46 150-182 (238)
11 1wrd_A TOM1, target of MYB pro 26.0 1.5E+02 0.0051 19.8 5.6 58 13-83 38-95 (103)
12 2fup_A Hypothetical protein PA 24.7 47 0.0016 22.2 2.4 26 17-42 92-117 (157)
13 3kv5_D JMJC domain-containing 24.4 44 0.0015 28.1 2.7 31 45-76 448-478 (488)
14 1e91_A Paired amphipathic heli 24.0 69 0.0024 20.8 3.1 21 26-46 58-78 (85)
15 2nps_B Syntaxin 13, vesicle-as 22.5 73 0.0025 19.7 2.8 23 63-85 8-30 (71)
16 3cr3_A PTS-dependent dihydroxy 22.1 1.8E+02 0.0063 21.2 5.4 64 22-89 6-76 (192)
17 3opc_A Uncharacterized protein 21.6 1E+02 0.0035 20.9 3.7 27 17-43 91-117 (154)
18 3nvo_A Zinc transport protein 20.7 2.4E+02 0.0081 20.2 7.7 66 17-85 186-254 (264)
No 1
>2wh0_Q Pkcev3, protein kinase C epsilon type, NPKC-epsilon; tandem binding, phosphoprotein, signaling protein, 14-3-3, cytoplasm, acetylation; HET: SEP; 2.25A {Homo sapiens}
Probab=62.55 E-value=3.7 Score=23.78 Aligned_cols=14 Identities=64% Similarity=0.857 Sum_probs=11.9
Q ss_pred HHHHHhhhHHHHHH
Q 033658 62 LIKELNNNIRRVVS 75 (114)
Q Consensus 62 LIrELN~NI~rVv~ 75 (114)
-|+||-+||+|..+
T Consensus 14 eikelennirkals 27 (31)
T 2wh0_Q 14 EIKELENNIRKALS 27 (31)
T ss_pred HHHHHHHHHHHHhc
Confidence 48999999999754
No 2
>1wr6_A ADP-ribosylation factor binding protein GGA3; three-helix bundle, clathrin coat adaptor protein, protein transport/signaling protein complex; 2.60A {Homo sapiens} SCOP: a.7.8.1 PDB: 1yd8_G
Probab=60.62 E-value=17 Score=25.13 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=46.7
Q ss_pred CCCcccchhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCcchhhHHHHHHHhhhHHHHHHHHhhhh
Q 033658 10 GNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLS 81 (114)
Q Consensus 10 ~~~~~~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS 81 (114)
|.....|.++.+-+-.+-++.|-.|-+ ||.+...|.+. ++=|=++|-.|.+|+.-|..+-
T Consensus 30 g~~~~~d~ell~ELy~~ck~~qp~i~k---L~~e~~ddde~---------l~elL~~ND~ln~vi~rY~~~~ 89 (111)
T 1wr6_A 30 EDSSDGDRELMKELFDQCENKRRTLFK---LASETEDNDNS---------LGDILQASDNLSRVINSYKTII 89 (111)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHH---HHHTCCTTCSS---------HHHHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHH---HHHHhccCHHH---------HHHHHHHhHHHHHHHHHHHHHh
Confidence 344456778888888888888887765 88887666654 4557789999999999998874
No 3
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=36.70 E-value=11 Score=23.78 Aligned_cols=20 Identities=40% Similarity=0.446 Sum_probs=17.7
Q ss_pred hhhHHHHHHHhhhHHHHHHH
Q 033658 57 TRNVGLIKELNNNIRRVVSL 76 (114)
Q Consensus 57 ~RNV~LIrELN~NI~rVv~L 76 (114)
.+|+.+.+..|+|+.++|+-
T Consensus 25 ~~N~~aL~~~~gnv~~aI~~ 44 (54)
T 2cp8_A 25 QLNLRLLKKHNYNILQVVTE 44 (54)
T ss_dssp HHHHHHHTTTTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHH
Confidence 58999999999999999864
No 4
>1oxz_A ADP-ribosylation factor binding protein GGA1; GAT domain, membrane protein; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=35.98 E-value=97 Score=23.21 Aligned_cols=62 Identities=19% Similarity=0.381 Sum_probs=45.7
Q ss_pred CCCccc-chhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCcchhhHHHHHHHhhhHHHHHHHHhhhhhh
Q 033658 10 GNGTQV-DGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLSSS 83 (114)
Q Consensus 10 ~~~~~~-d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~s 83 (114)
|..... |.++.+.+-..-++.|-.|-+ ||.+...|.+. ++=|=++|-.|.+|+.-|..+..+
T Consensus 98 g~~~~~~d~Ell~eL~~~Ck~~qp~i~~---Li~e~~ddee~---------L~elL~~ND~Ln~vl~kY~~~~~g 160 (186)
T 1oxz_A 98 GGAAAGSSEDLMKELYQRCERMRPTLFR---LASDTEDNDEA---------LAEILQANDNLTQVINLYKQLVRG 160 (186)
T ss_dssp SCSCTTTTHHHHHHHHHHHHHHHHHHHH---HHHHCCSCHHH---------HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred CccCccccHHHHHHHHHHHHHHHHHHHH---HHHHccCCHHH---------HHHHHHhhHHHHHHHHHHHHHhcC
Confidence 344445 788888888888888877755 77776555443 355678999999999999988544
No 5
>3kv9_A JMJC domain-containing histone demethylation protein 1D; jumonji domain lysine demethylase, metal-binding, zinc, zinc-finger; 2.29A {Homo sapiens} PDB: 3kva_A* 3kvb_A* 3u78_A*
Probab=31.95 E-value=32 Score=28.64 Aligned_cols=32 Identities=41% Similarity=0.600 Sum_probs=26.8
Q ss_pred HHhhccccCCCCcchhhHHHHHHHhhhHHHHHH
Q 033658 43 EINQNHESKVPDNLTRNVGLIKELNNNIRRVVS 75 (114)
Q Consensus 43 EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~ 75 (114)
+...-|++.||+++ +=+.||+||..-|+-+-+
T Consensus 355 ~~~~~~~~~~p~~~-~~~~~~~~l~~~~~~~~~ 386 (397)
T 3kv9_A 355 ELVSEHAFEIPDNV-RPGHLIKELSKVIRAIEE 386 (397)
T ss_dssp TTGGGTGGGSCTTC-CHHHHHHHHHHHHHHHHH
T ss_pred cccccccccCCCcC-CHHHHHHHHHHHHHHHHh
Confidence 44567999999999 699999999988887654
No 6
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.48 E-value=96 Score=22.70 Aligned_cols=61 Identities=18% Similarity=0.351 Sum_probs=41.3
Q ss_pred CCccc-chhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCcchhhHHHHHHHhhhHHHHHHHHhhhhhh
Q 033658 11 NGTQV-DGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLSSS 83 (114)
Q Consensus 11 ~~~~~-d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~s 83 (114)
...+. |.++.+.+-.+-++.|-.|-+ ||.+...|.+. ++=|=++|-.|.+|+.-|..+..+
T Consensus 83 ~~~~~~d~Ell~eL~~~Ck~~qp~i~~---Li~e~~ddee~---------L~elL~~ND~Ln~vl~kY~~~~~g 144 (158)
T 1naf_A 83 GAAAGSSEDLMKELYQRCERMRPTLFR---LASDTEDNDEA---------LAEILQANDNLTQVINLYKQLVRG 144 (158)
T ss_dssp -----CCTTHHHHHHHHHHTHHHHHHH---HHHHCCSCHHH---------HHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cCCCcccHHHHHHHHHHHHHHHHHHHH---HHHHccCCHHH---------HHHHHHhhHHHHHHHHHHHHHhcC
Confidence 33344 778888888888888877754 77765444432 345678999999999999988443
No 7
>3k3o_A PHF8, PHD finger protein 8; histone demethylase, chromatin modification, methylated H3K9, mental retardation, metal-BI phosphoprotein, zinc-finger; HET: AKG; 2.10A {Homo sapiens} PDB: 3k3n_A* 4do0_A* 2wwu_A*
Probab=29.12 E-value=33 Score=28.26 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=25.4
Q ss_pred HhhccccCCCCcchhhHHHHHHHhhhHHHHH
Q 033658 44 INQNHESKVPDNLTRNVGLIKELNNNIRRVV 74 (114)
Q Consensus 44 INqNHeSr~PdnL~RNV~LIrELN~NI~rVv 74 (114)
.---|+..||+++ +=..||++|..-|+-|-
T Consensus 328 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 357 (371)
T 3k3o_A 328 ALPDHEDEIPETV-RTVQLIKDLAREIRLVE 357 (371)
T ss_dssp TGGGTGGGSCTTC-CHHHHHHHHHHHHHHHH
T ss_pred hccchhhhccccC-CHHHHHHHHHHHHHHHH
Confidence 3445999999999 68999999999888764
No 8
>1o3x_A ADP-ribosylation factor binding protein GGA1; protein transport; 2.10A {Homo sapiens} SCOP: a.7.8.1 PDB: 1nwm_X 1x79_A
Probab=28.59 E-value=95 Score=22.12 Aligned_cols=59 Identities=19% Similarity=0.362 Sum_probs=40.2
Q ss_pred CCccc-chhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCcchhhHHHHHHHhhhHHHHHHHHhhhh
Q 033658 11 NGTQV-DGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLS 81 (114)
Q Consensus 11 ~~~~~-d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS 81 (114)
...+. |.++.+.+-.+-++.|-.|-+ ||.+...|.+. ++=|=++|-.|.+|+.-|..+.
T Consensus 74 ~~~~~~d~Ell~eL~~~ck~~qp~i~~---li~e~~ddee~---------l~elL~~ND~ln~vl~kY~~~~ 133 (140)
T 1o3x_A 74 GAAAGSSEDLMKELYQRCERMRPTLFR---LASDTEDNDEA---------LAEILQANDNLTQVINLYKQLV 133 (140)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHHHHH---HHTTCTTCHHH---------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHH---HHHHccCCHHH---------HHHHHHhhHHHHHHHHHHHHHh
Confidence 33444 677887777777777766654 56554444332 3446789999999999998774
No 9
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=27.32 E-value=10 Score=24.99 Aligned_cols=21 Identities=29% Similarity=0.589 Sum_probs=16.5
Q ss_pred CCCCcchhhHHHHHHHhhhHH
Q 033658 51 KVPDNLTRNVGLIKELNNNIR 71 (114)
Q Consensus 51 r~PdnL~RNV~LIrELN~NI~ 71 (114)
-+|.-|.|+..+||||=.-..
T Consensus 15 ~LP~El~r~~~~irelD~~~~ 35 (104)
T 4afl_A 15 NLPFELQRNFQLMRDLDQRTE 35 (104)
T ss_dssp GHHHHHHHHHHHHHHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999865443
No 10
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=27.17 E-value=53 Score=25.17 Aligned_cols=33 Identities=9% Similarity=0.343 Sum_probs=28.0
Q ss_pred ccchhhhHHHHHhHHHHHHHHhhhHHHHHHHhh
Q 033658 14 QVDGKVLQTFRKSFGQVQDILDQNRLLINEINQ 46 (114)
Q Consensus 14 ~~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINq 46 (114)
.+|.++-.-+...+.++..||.+||..+..|=+
T Consensus 150 ~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~ 182 (238)
T 2di4_A 150 EIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVK 182 (238)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367788888899999999999999999887643
No 11
>1wrd_A TOM1, target of MYB protein 1; three-helix bundle, ubiquitin-binding protein, protein trans signaling protein complex; 1.75A {Homo sapiens} SCOP: a.7.8.1
Probab=25.99 E-value=1.5e+02 Score=19.79 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=39.8
Q ss_pred cccchhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCcchhhHHHHHHHhhhHHHHHHHHhhhhhh
Q 033658 13 TQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVSLYADLSSS 83 (114)
Q Consensus 13 ~~~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~s 83 (114)
...|.++.+.|-.+-++.|-.+-+ ||.+. .|.+ =++=+=++|..|.+|+.-|..+...
T Consensus 38 ~~~~~el~~eL~~~c~~~qp~i~~---li~~~-~dee---------~l~~lL~~ND~L~~vl~ry~~~~~~ 95 (103)
T 1wrd_A 38 EPADLELLQELNRTCRAMQQRVLE---LIPQI-ANEQ---------LTEELLIVNDNLNNVFLRHERFERF 95 (103)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH---HHHHC-CCHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHH---HHhcc-CCHH---------HHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 346777888777777777766643 56543 2222 1444678999999999999987543
No 12
>2fup_A Hypothetical protein PA3352; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.48A {Pseudomonas aeruginosa} SCOP: a.47.5.1
Probab=24.74 E-value=47 Score=22.22 Aligned_cols=26 Identities=12% Similarity=-0.031 Sum_probs=20.1
Q ss_pred hhhhHHHHHhHHHHHHHHhhhHHHHH
Q 033658 17 GKVLQTFRKSFGQVQDILDQNRLLIN 42 (114)
Q Consensus 17 ~~~~~~f~ksF~qVQ~iLDqNR~LI~ 42 (114)
.+.|+.+.....+++..=+.|..||+
T Consensus 92 ~~~~~~l~~l~~~~~~~N~~Ng~Li~ 117 (157)
T 2fup_A 92 LARGDELGELLERCQQANLRNGRIIR 117 (157)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788888888888888888888876
No 13
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=24.43 E-value=44 Score=28.12 Aligned_cols=31 Identities=39% Similarity=0.521 Sum_probs=24.5
Q ss_pred hhccccCCCCcchhhHHHHHHHhhhHHHHHHH
Q 033658 45 NQNHESKVPDNLTRNVGLIKELNNNIRRVVSL 76 (114)
Q Consensus 45 NqNHeSr~PdnL~RNV~LIrELN~NI~rVv~L 76 (114)
..-|+..||+++ +=+.||+||..-|+-+-+.
T Consensus 448 ~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~ 478 (488)
T 3kv5_D 448 VSEHAFEIPDNV-RPGHLIKELSKVIRAIEEE 478 (488)
T ss_dssp ---CGGGCCSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred cccccccCCCcC-CHHHHHHHHHHHHHHHHhh
Confidence 346999999999 5999999999988876543
No 14
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=24.02 E-value=69 Score=20.85 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=16.0
Q ss_pred hHHHHHHHHhhhHHHHHHHhh
Q 033658 26 SFGQVQDILDQNRLLINEINQ 46 (114)
Q Consensus 26 sF~qVQ~iLDqNR~LI~EINq 46 (114)
-..+|+.++.-...||.+.|+
T Consensus 58 V~~~V~~Lf~~hpDLl~~F~~ 78 (85)
T 1e91_A 58 VFTEVANLFRGQEDLLSEFGQ 78 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHH
Confidence 456788888888888888764
No 15
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=22.50 E-value=73 Score=19.68 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.1
Q ss_pred HHHHhhhHHHHHHHHhhhhhhhh
Q 033658 63 IKELNNNIRRVVSLYADLSSSFA 85 (114)
Q Consensus 63 IrELN~NI~rVv~LYsdLS~sF~ 85 (114)
|++|-..|.-+-++|.||+.-..
T Consensus 8 i~~ie~~i~eL~~iF~dla~lV~ 30 (71)
T 2nps_B 8 IQQLEADILDVNQIFKDLAMMIH 30 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999987664
No 16
>3cr3_A PTS-dependent dihydroxyacetone kinase, ADP- binding subunit DHAL; transient protein-protein complex transferase complex PTS- dependent dihydroxyacetone kinase; HET: ADP; 2.10A {Lactococcus lactis subsp} SCOP: a.208.1.1
Probab=22.07 E-value=1.8e+02 Score=21.23 Aligned_cols=64 Identities=16% Similarity=0.344 Sum_probs=42.2
Q ss_pred HHHHhHHHHHHHHhhhHHHHHHHhhccccCCCC-----cchhhHHHHH-HHhhh-HHHHHHHHhhhhhhhhhhhc
Q 033658 22 TFRKSFGQVQDILDQNRLLINEINQNHESKVPD-----NLTRNVGLIK-ELNNN-IRRVVSLYADLSSSFARSVE 89 (114)
Q Consensus 22 ~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~Pd-----nL~RNV~LIr-ELN~N-I~rVv~LYsdLS~sF~~~~~ 89 (114)
.|.+-|..+-..|..|+.-|+++|. ++|| ||.|=..-|. +|... -..+.++...++..+...+.
T Consensus 6 ~~~~~l~~~~~~l~~~~~~L~~LD~----~vGDGD~G~nm~~g~~a~~~~l~~~~~~~~~~~l~~~~~~~~~~~g 76 (192)
T 3cr3_A 6 TTIEWLGKFNEKIQENKAYLSELDG----PIGDGDHGANMARGMSETMKALEVSNFGNVSEIFKKVAMTLMSKVG 76 (192)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHTT----TTSCSCHHHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhHHHHHHhCC----CCCCCchhHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 4667788899999999999999997 8998 5777665554 34320 11234445555555554443
No 17
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=21.59 E-value=1e+02 Score=20.89 Aligned_cols=27 Identities=22% Similarity=0.299 Sum_probs=22.5
Q ss_pred hhhhHHHHHhHHHHHHHHhhhHHHHHH
Q 033658 17 GKVLQTFRKSFGQVQDILDQNRLLINE 43 (114)
Q Consensus 17 ~~~~~~f~ksF~qVQ~iLDqNR~LI~E 43 (114)
.+.|+.+.....+.|..=++|..||+.
T Consensus 91 ~~~w~~l~~l~~~c~~~N~~Ng~Li~~ 117 (154)
T 3opc_A 91 GPLWQALQANAAQAREHNQRNGTLIAV 117 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368898888888888888888888874
No 18
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=20.66 E-value=2.4e+02 Score=20.15 Aligned_cols=66 Identities=11% Similarity=0.157 Sum_probs=48.2
Q ss_pred hhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCcchhhHHHHHHHhhhHHHHHH---HHhhhhhhhh
Q 033658 17 GKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNIRRVVS---LYADLSSSFA 85 (114)
Q Consensus 17 ~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN~NI~rVv~---LYsdLS~sF~ 85 (114)
-.-+..+.|.....+..|-.+|.+++.+-..+...+++ ..-..+|++..-+.|+++ .|+++.++-.
T Consensus 186 l~~l~~lrr~l~~lrr~l~p~~~vl~~L~~~~~~~~~~---~~~~~l~Dv~d~~~~~~e~~~~~re~l~~l~ 254 (264)
T 3nvo_A 186 RGFLALLRKQLIVMRRYMAPQRDVYARLASERLPWMSD---DHRRRMQDIADRLGRGLDEIDACIARTGIMA 254 (264)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCTTSCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCCccCCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999998766555554 344567777777777754 4555544433
Done!