Query 033658
Match_columns 114
No_of_seqs 64 out of 66
Neff 2.6
Searched_HMMs 13730
Date Mon Mar 25 07:32:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033658.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033658hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k3ka_ f.1.4.1 (A:) Bcl-2 hom 42.9 12 0.0009 25.3 3.8 77 8-88 21-101 (146)
2 d2di4a1 a.269.1.1 (A:406-607) 31.7 21 0.0015 23.5 3.4 30 15-44 142-171 (202)
3 d2ce7a1 a.269.1.1 (A:411-603) 26.6 29 0.0021 22.7 3.4 30 15-44 143-172 (193)
4 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 20.1 34 0.0025 21.2 2.6 20 63-82 171-190 (196)
5 d2daha1 a.5.2.1 (A:8-48) Ubiqu 19.1 35 0.0025 18.8 2.2 21 56-76 17-37 (41)
6 d1ssqa_ b.81.1.6 (A:) Serine a 18.4 38 0.0027 23.6 2.8 30 15-47 1-30 (241)
7 d1qhda1 a.115.1.2 (A:1-148,A:3 18.3 25 0.0018 25.8 1.8 8 39-46 29-36 (213)
8 d3ebta1 d.17.4.9 (A:1-131) Unc 17.0 19 0.0014 20.9 0.7 23 56-78 1-28 (131)
9 d2fupa1 a.47.5.1 (A:1-130) Hyp 16.6 43 0.0031 20.5 2.4 26 17-42 91-116 (130)
10 d1q3ea_ b.82.3.2 (A:) HCN pace 16.2 69 0.005 20.0 3.5 37 50-88 51-87 (193)
No 1
>d1k3ka_ f.1.4.1 (A:) Bcl-2 homolog {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]}
Probab=42.91 E-value=12 Score=25.27 Aligned_cols=77 Identities=10% Similarity=0.164 Sum_probs=52.5
Q ss_pred cCCCCcccchhhhHHHHHhHHHHHHHHhhhHHHHHHHhhccccCCCCcchhhHHHHHHHh----hhHHHHHHHHhhhhhh
Q 033658 8 GIGNGTQVDGKVLQTFRKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELN----NNIRRVVSLYADLSSS 83 (114)
Q Consensus 8 ~~~~~~~~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqNHeSr~PdnL~RNV~LIrELN----~NI~rVv~LYsdLS~s 83 (114)
|+|-++-.+..+..|..+ .|++++++.+...+..=++=...-++.++.=-..+.||. -|=.|||.||+ .+.-
T Consensus 21 g~~~~e~l~~p~~~tik~---~v~~i~~kh~~~F~~ml~~L~i~~~~~~~~f~~V~~elF~DG~~NWGRIVaLfa-Fg~~ 96 (146)
T d1k3ka_ 21 GLNEPEYLYHPLLSPIKL---YITGLMRDKESLFEAMLANVRFHSTTGIDQLGLSMLQVSGDGNMNWGRALAILT-FGSF 96 (146)
T ss_dssp TTCCCSSCCCSSCSHHHH---HHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHTHHHHHCSSCSCCHHHHHHHHH-HHHH
T ss_pred cCCchHhhcCchhHHHHH---HHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHH
Confidence 566666677778877775 678899999888877655544333344433344567775 58999999998 4666
Q ss_pred hhhhh
Q 033658 84 FARSV 88 (114)
Q Consensus 84 F~~~~ 88 (114)
++..+
T Consensus 97 la~~~ 101 (146)
T d1k3ka_ 97 VAQKL 101 (146)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66554
No 2
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Probab=31.74 E-value=21 Score=23.55 Aligned_cols=30 Identities=10% Similarity=0.366 Sum_probs=26.6
Q ss_pred cchhhhHHHHHhHHHHHHHHhhhHHHHHHH
Q 033658 15 VDGKVLQTFRKSFGQVQDILDQNRLLINEI 44 (114)
Q Consensus 15 ~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EI 44 (114)
+|.++-.-+++.+.++..||.+||.++..|
T Consensus 142 id~ev~~ll~~a~~~a~~iL~~~~~~l~~l 171 (202)
T d2di4a1 142 IDEEVKRIITEQYEKAKAIVEEYKEPLKAV 171 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 677788888999999999999999998876
No 3
>d2ce7a1 a.269.1.1 (A:411-603) Cell division protein FtsH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=26.63 E-value=29 Score=22.69 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=25.8
Q ss_pred cchhhhHHHHHhHHHHHHHHhhhHHHHHHH
Q 033658 15 VDGKVLQTFRKSFGQVQDILDQNRLLINEI 44 (114)
Q Consensus 15 ~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EI 44 (114)
+|.++-..+.+.+..+..||.+||.++..|
T Consensus 143 id~ev~~ll~~a~~~a~~iL~~~~~~l~~l 172 (193)
T d2ce7a1 143 IDEEVKKIVTNCYERAKEIIRKYRKQLDNI 172 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 566777888889999999999999998876
No 4
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.06 E-value=34 Score=21.18 Aligned_cols=20 Identities=15% Similarity=0.493 Sum_probs=15.5
Q ss_pred HHHHhhhHHHHHHHHhhhhh
Q 033658 63 IKELNNNIRRVVSLYADLSS 82 (114)
Q Consensus 63 IrELN~NI~rVv~LYsdLS~ 82 (114)
|++|-..|.-|-+||.||+.
T Consensus 171 I~~Ie~sI~eL~~iF~dLa~ 190 (196)
T d1fioa_ 171 LLKLEKSMAELTQLFNDMEE 190 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHhHHHHHHHHHHHHH
Confidence 56677788888888888874
No 5
>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.07 E-value=35 Score=18.78 Aligned_cols=21 Identities=10% Similarity=0.109 Sum_probs=18.2
Q ss_pred chhhHHHHHHHhhhHHHHHHH
Q 033658 56 LTRNVGLIKELNNNIRRVVSL 76 (114)
Q Consensus 56 L~RNV~LIrELN~NI~rVv~L 76 (114)
=.+|+.-.++.||||.+-|+.
T Consensus 17 ~~~Ni~AL~~t~Gdv~~Aie~ 37 (41)
T d2daha1 17 REANLQALIATGGDVDAAVEK 37 (41)
T ss_dssp HHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 368999999999999998875
No 6
>d1ssqa_ b.81.1.6 (A:) Serine acetyltransferase {Haemophilus influenzae [TaxId: 727]}
Probab=18.36 E-value=38 Score=23.58 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=24.3
Q ss_pred cchhhhHHHHHhHHHHHHHHhhhHHHHHHHhhc
Q 033658 15 VDGKVLQTFRKSFGQVQDILDQNRLLINEINQN 47 (114)
Q Consensus 15 ~d~~~~~~f~ksF~qVQ~iLDqNR~LI~EINqN 47 (114)
+|.++|+++.. +++..++++..|=.-+.+.
T Consensus 1 ~~~~iW~~i~~---ea~~~~~~EP~L~~~~~~~ 30 (241)
T d1ssqa_ 1 MNLDVWQHIRQ---EAKELAENEPMLASFFHST 30 (241)
T ss_dssp CCHHHHHHHHH---HHHHHHHHCHHHHHHHHHH
T ss_pred CChHHHHHHHH---HHHHHHhhCcHHHHHHHHh
Confidence 47789999986 8888999988888776654
No 7
>d1qhda1 a.115.1.2 (A:1-148,A:333-397) vp6, the major capsid protein of group A rotavirus {Bovine rotavirus [TaxId: 10927]}
Probab=18.27 E-value=25 Score=25.78 Aligned_cols=8 Identities=50% Similarity=0.580 Sum_probs=4.9
Q ss_pred HHHHHHhh
Q 033658 39 LLINEINQ 46 (114)
Q Consensus 39 ~LI~EINq 46 (114)
.||||+||
T Consensus 29 DiiQQ~Nq 36 (213)
T d1qhda1 29 DLIQQFNQ 36 (213)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 46666665
No 8
>d3ebta1 d.17.4.9 (A:1-131) Uncharacterized protein BPSS0132 {Burkholderia pseudomallei [TaxId: 28450]}
Probab=17.05 E-value=19 Score=20.95 Aligned_cols=23 Identities=17% Similarity=0.365 Sum_probs=11.7
Q ss_pred chhhHHHHHHHhh-----hHHHHHHHHh
Q 033658 56 LTRNVGLIKELNN-----NIRRVVSLYA 78 (114)
Q Consensus 56 L~RNV~LIrELN~-----NI~rVv~LYs 78 (114)
|+.|..+|+++.. ++..+.++|+
T Consensus 1 M~~n~~~v~~~~~a~~~~D~~~~~~~~a 28 (131)
T d3ebta1 1 MSNNMQTVRESYEAFHRRDLPGVLAALA 28 (131)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHTTEE
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHhC
Confidence 3456666666543 4444444443
No 9
>d2fupa1 a.47.5.1 (A:1-130) Hypothetical protein PA3352 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=16.56 E-value=43 Score=20.52 Aligned_cols=26 Identities=12% Similarity=-0.031 Sum_probs=21.0
Q ss_pred hhhhHHHHHhHHHHHHHHhhhHHHHH
Q 033658 17 GKVLQTFRKSFGQVQDILDQNRLLIN 42 (114)
Q Consensus 17 ~~~~~~f~ksF~qVQ~iLDqNR~LI~ 42 (114)
.+.|+.+..-..++|..=++|..||+
T Consensus 91 ~~~~~~L~~l~~~~k~~N~~Ng~Li~ 116 (130)
T d2fupa1 91 LARGDELGELLERCQQANLRNGRIIR 116 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35799999999999999999998886
No 10
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}
Probab=16.19 E-value=69 Score=20.01 Aligned_cols=37 Identities=11% Similarity=0.281 Sum_probs=25.5
Q ss_pred cCCCCcchhhHHHHHHHhhhHHHHHHHHhhhhhhhhhhh
Q 033658 50 SKVPDNLTRNVGLIKELNNNIRRVVSLYADLSSSFARSV 88 (114)
Q Consensus 50 Sr~PdnL~RNV~LIrELN~NI~rVv~LYsdLS~sF~~~~ 88 (114)
+.+|..|.+. ++.+++..+=+=+.+.+.++..|-..+
T Consensus 51 ~~lp~~l~~~--i~~~~~~~~l~~~~~F~~~~~~~l~~l 87 (193)
T d1q3ea_ 51 GELNGPLREE--IVNFNCRKLVASMPLFANADPNFVTAM 87 (193)
T ss_dssp HHSCHHHHHH--HHHHHTHHHHHHCHHHHTSCHHHHHHH
T ss_pred HHCCcchhHH--HHHHHHHHHHhcchHHHhhhHHHHHHH
Confidence 4556666554 446777776666778888898888755
Done!