BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033664
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RJJ|A Chain A, Solution Structure Of A Homodimeric Hypothetical Protein,
At5g22580, A Structural Genomics Target From Arabidopsis
Thaliana
pdb|1RJJ|B Chain B, Solution Structure Of A Homodimeric Hypothetical Protein,
At5g22580, A Structural Genomics Target From Arabidopsis
Thaliana
Length = 111
Score = 137 bits (345), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 65/100 (65%), Positives = 78/100 (78%)
Query: 12 FKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFN 71
FKHLV+VKFKE V++I+KG++ LVS+ID VKSFEWG+D E +MLRQGFTHAF MTF
Sbjct: 6 FKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFE 65
Query: 72 KKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKA 111
K+ Y F SHP HVEFSA F+A I+KIVLLDFP K+
Sbjct: 66 NKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKS 105
>pdb|1Q53|A Chain A, Solution Structure Of Hypothetical Arabidopsis Thaliana
Protein At3g17210. Center For Eukaryotic Structural
Genomics Target 13081
pdb|1Q53|B Chain B, Solution Structure Of Hypothetical Arabidopsis Thaliana
Protein At3g17210. Center For Eukaryotic Structural
Genomics Target 13081
Length = 112
Score = 82.4 bits (202), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 66/98 (67%), Gaps = 5/98 (5%)
Query: 13 KHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMT 69
KH+++ FK+GV +E+++KG LV+ I+ +K+F WG+DV E L QG+TH F T
Sbjct: 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDV-SIENLHQGYTHIFEST 70
Query: 70 FNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF-PT 106
F KE + +HP+HVEF+ F +++K++++D+ PT
Sbjct: 71 FESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPT 108
>pdb|1Q4R|A Chain A, Gene Product Of At3g17210 From Arabidopsis Thaliana
pdb|2Q3P|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
At3g17210 From Arabidopsis Thaliana
Length = 112
Score = 82.0 bits (201), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 65/98 (66%), Gaps = 5/98 (5%)
Query: 13 KHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMT 69
KH+++ FK+GV +E+++KG LV+ I+ K+F WG+DV E L QG+TH F T
Sbjct: 12 KHVLLASFKDGVSPEKIEELIKGYANLVNLIEPXKAFHWGKDV-SIENLHQGYTHIFEST 70
Query: 70 FNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF-PT 106
F KE + +HP+HVEF+ F +++K++++D+ PT
Sbjct: 71 FESKEAVAEYIAHPAHVEFATIFLGSLDKVLVIDYKPT 108
>pdb|1SI9|A Chain A, Boiling Stable Protein Isolated From Populus Tremula
pdb|1SI9|B Chain B, Boiling Stable Protein Isolated From Populus Tremula
pdb|1SI9|C Chain C, Boiling Stable Protein Isolated From Populus Tremula
pdb|1TR0|A Chain A, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|B Chain B, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|C Chain C, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|D Chain D, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|E Chain E, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|F Chain F, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|G Chain G, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|H Chain H, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|I Chain I, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|J Chain J, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|K Chain K, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|L Chain L, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|M Chain M, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|N Chain N, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|O Chain O, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|P Chain P, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|R Chain R, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|S Chain S, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|T Chain T, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|U Chain U, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|V Chain V, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|W Chain W, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|X Chain X, Crystal Structure Of A Boiling Stable Protein Sp1
pdb|1TR0|Y Chain Y, Crystal Structure Of A Boiling Stable Protein Sp1
Length = 108
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 13 KHLVIVKFKEGVVVEDI---VKGMKKLVSEIDAVKSFEWGQDVEGQEM--LRQGFTHAFL 67
KH ++ +FK+ + E I + L+ I ++KSF WG D+ G E L +G+THAF
Sbjct: 10 KHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDL-GMESAELNRGYTHAFE 68
Query: 68 MTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF 104
TF K + + F+ F + + +++D+
Sbjct: 69 STFESKSGLQEYLDSAALAAFAEGFLPTLSQRLVIDY 105
>pdb|2QYC|A Chain A, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
(Bb1511) From Bordetella Bronchiseptica Rb50 At 1.90 A
Resolution
pdb|2QYC|B Chain B, Crystal Structure Of A Dimeric Ferredoxin-Like Protein
(Bb1511) From Bordetella Bronchiseptica Rb50 At 1.90 A
Resolution
Length = 103
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 17/108 (15%)
Query: 12 FKHLVIVKFKEGV------VVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHA 65
F H+V +F +G+ V++ V K+ E D + + +G++V + QG+THA
Sbjct: 5 FLHVVXXEFDDGIDAGFFRTVDEYVARXKR---ECDGLLLYHFGENVAARS---QGYTHA 58
Query: 66 FLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDFPTVLGKAPA 113
F + + P+HV A I+++V+ D G+ PA
Sbjct: 59 TSSAFVDAAAHDAYQVCPAHVAXKAFXGPRIKRVVVYD-----GEVPA 101
>pdb|3FMB|A Chain A, Crystal Structure Of Dimeric Protein Of Unknown Function
And Ferredoxin-Like Fold (Yp_212648.1) From Bacteroides
Fragilis Nctc 9343 At 1.85 A Resolution
pdb|3FMB|B Chain B, Crystal Structure Of Dimeric Protein Of Unknown Function
And Ferredoxin-Like Fold (Yp_212648.1) From Bacteroides
Fragilis Nctc 9343 At 1.85 A Resolution
Length = 118
Score = 31.2 bits (69), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 44/99 (44%), Gaps = 11/99 (11%)
Query: 13 KHLVIVKFKEGVVVEDIV-------KGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHA 65
KH+V+ K ++ V VE+ + + ++ L ++I ++ E G + E + A
Sbjct: 22 KHIVLFKLRDDVPVEEKLVVXNSFKEAIEALPAKISVIRKIEVGLNXNPGET----WNIA 77
Query: 66 FLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF 104
F+ +D +A+HP HV + E +D+
Sbjct: 78 LYSEFDNLDDVKFYATHPEHVAAGKILAETKESRACVDY 116
>pdb|3BDE|A Chain A, Crystal Structure Of A Dabb Family Protein With A
Ferredoxin-Like Fold (Mll5499) From Mesorhizobium Loti
Maff303099 At 1.79 A Resolution
pdb|3BDE|B Chain B, Crystal Structure Of A Dabb Family Protein With A
Ferredoxin-Like Fold (Mll5499) From Mesorhizobium Loti
Maff303099 At 1.79 A Resolution
Length = 120
Score = 28.9 bits (63), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 34 KKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEF-SATF 92
KK++S I V FE + + + GF+ F + YT + HP HV F +
Sbjct: 46 KKILSAIRGVTHFEQLRQISPKIDYHFGFS----XEFADQAAYTRYNDHPDHVAFVRDRW 101
Query: 93 SAAIEKIVLLDF 104
+EK + +D+
Sbjct: 102 VPEVEKFLEIDY 113
>pdb|3BB5|A Chain A, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|B Chain B, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|C Chain C, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|D Chain D, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|E Chain E, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
pdb|3BB5|F Chain F, Crystal Structure Of A Dimeric Ferredoxin-Like Protein Of
Unknown Function (Jann_3925) From Jannaschia Sp. Ccs1 At
2.30 A Resolution
Length = 121
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Query: 33 MKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATF 92
+ L E+ + F G + + ++ + + + FL TF K +A HP+H
Sbjct: 45 LDGLAPELPGLTEFRHGPNRDFEQKSER-YPYGFLCTFTDKAALDAYAVHPTHQRAGGXL 103
Query: 93 SAAIEK 98
A+
Sbjct: 104 VASCRN 109
>pdb|3FNN|A Chain A, Biochemical And Structural Analysis Of An Atypical Thyx:
Corynebacterium Glutamicum Nchu 87078 Depends On Thya
For Thymidine Biosynthesis
Length = 256
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 35 KLVSEIDAVKSF------EWGQDVEGQEMLRQGFTHAFLMTFNKKEDYT 77
KL E+ A SF EW DVEG E L + A TF+K T
Sbjct: 12 KLSVELIACSSFTPPADVEWSTDVEGAEALVEFAGRACYETFDKPNPRT 60
>pdb|3GE9|A Chain A, A Structurally Atypical Thyx From Corynebacterium
Glutamicum Nchu 87078 Is Not Required For Thymidylate
Biosynthesis
Length = 255
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 35 KLVSEIDAVKSF------EWGQDVEGQEMLRQGFTHAFLMTFNKKEDYT 77
KL E+ A SF EW DVEG E L + A TF+K T
Sbjct: 11 KLSVELIACSSFTPPADVEWSTDVEGAEALVEFAGRACYETFDKPNPRT 59
>pdb|3BN7|A Chain A, Crystal Structure Of A Dimeric Ferredoxin-like Protein
(cc_2267) From Caulobacter Crescentus Cb15 At 1.64 A
Resolution
Length = 120
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 29 IVKGMKKLVSEIDAVKSFEWG--QDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHV 86
++ G+K L ID ++ G E ++++ + + L F ED + HP
Sbjct: 41 LIAGLKAL-KAIDVIQQLHVGVPAATEKRDVVDNSYDVSELXVFKSVEDQKRYRDHPLLQ 99
Query: 87 EFSATFSAAIEKIVLLDFPTV 107
+F A S K+V+ D +V
Sbjct: 100 KFVADCSHLWSKVVVYDSXSV 120
>pdb|1GES|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GES|B Chain B, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GEU|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 54 GQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87
G + + QGF A M KK+ T A HP+ E
Sbjct: 411 GMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAE 444
>pdb|1GER|A Chain A, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GER|B Chain B, The Structure Of Glutathione Reductase From Escherichia
Coli At 1.86 Angstroms Resolution: Comparison With The
Enzyme From Human Erythrocytes
pdb|1GET|A Chain A, Anatomy Of An Engineered Nad-Binding Site
pdb|1GET|B Chain B, Anatomy Of An Engineered Nad-Binding Site
Length = 450
Score = 25.4 bits (54), Expect = 8.8, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 17/34 (50%)
Query: 54 GQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87
G + + QGF A M KK+ T A HP+ E
Sbjct: 411 GMDEMLQGFAVALKMGATKKDFDNTVAIHPTAAE 444
>pdb|3KS9|A Chain A, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
pdb|3KS9|B Chain B, Metabotropic Glutamate Receptor Mglur1 Complexed With
Ly341495 Antagonist
Length = 496
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 13 KHLVIVKFKEGVVVEDIVKGMKKL--VSEIDAVKSFEWG---QDVEGQEMLRQG 61
K V+V F EG+ V ++ M++L V E + S W + +EG E+ G
Sbjct: 256 KARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANG 309
>pdb|1EWK|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWK|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate
pdb|1EWT|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWT|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form I
pdb|1EWV|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1EWV|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Ligand Free Form Ii
pdb|1ISR|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With Glutamate And Gadolinium Ion
pdb|1ISS|A Chain A, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
pdb|1ISS|B Chain B, Crystal Structure Of Metabotropic Glutamate Receptor
Subtype 1 Complexed With An Antagonist
Length = 490
Score = 25.0 bits (53), Expect = 10.0, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Query: 13 KHLVIVKFKEGVVVEDIVKGMKKL--VSEIDAVKSFEWG---QDVEGQEMLRQG 61
K V+V F EG+ V ++ M++L V E + S W + +EG E+ G
Sbjct: 251 KARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANG 304
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,961,468
Number of Sequences: 62578
Number of extensions: 105491
Number of successful extensions: 251
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 233
Number of HSP's gapped (non-prelim): 20
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)