Query 033664
Match_columns 114
No_of_seqs 121 out of 989
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 04:52:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033664.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033664hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07876 Dabb: Stress responsi 100.0 1.4E-30 3E-35 166.0 12.3 94 12-106 1-97 (97)
2 PF03992 ABM: Antibiotic biosy 98.5 3.2E-06 6.9E-11 50.5 10.0 74 11-90 1-77 (78)
3 COG1359 Uncharacterized conser 97.8 0.00093 2E-08 42.7 11.3 87 11-103 1-91 (100)
4 TIGR02118 conserved hypothetic 97.8 0.00054 1.2E-08 43.6 9.6 81 16-98 4-88 (100)
5 PRK10486 autoinducer-2 (AI-2) 97.3 0.011 2.4E-07 37.3 11.1 86 11-103 1-89 (96)
6 PF11639 HapK: REDY-like prote 97.1 0.013 2.8E-07 37.9 9.5 82 13-97 3-88 (104)
7 PF07045 DUF1330: Protein of u 96.8 0.0097 2.1E-07 35.1 6.6 57 31-89 9-65 (65)
8 COG2329 Uncharacterized enzyme 96.6 0.068 1.5E-06 34.5 9.8 80 11-94 2-83 (105)
9 COG3224 Uncharacterized protei 96.5 0.033 7.2E-07 39.5 8.5 93 10-107 9-103 (195)
10 PRK13315 heme-degrading monoox 95.7 0.28 6.2E-06 31.9 9.4 74 11-90 1-77 (107)
11 PF07110 EthD: EthD domain; I 95.6 0.12 2.5E-06 31.7 7.1 39 57-95 52-91 (95)
12 COG5470 Uncharacterized conser 95.4 0.23 4.9E-06 31.7 7.8 86 14-103 6-94 (96)
13 PRK13314 heme-degrading monoox 95.2 0.28 6.1E-06 31.9 8.2 92 15-112 5-102 (107)
14 PRK13316 heme-degrading monoox 95.2 0.54 1.2E-05 31.3 10.5 93 15-112 5-116 (121)
15 PF01037 AsnC_trans_reg: AsnC 93.9 0.49 1.1E-05 27.5 6.6 54 16-81 1-54 (74)
16 PRK13313 heme-degrading monoox 92.3 1.6 3.4E-05 28.5 7.5 72 12-90 2-77 (108)
17 PRK13312 heme-degrading monoox 91.8 2.1 4.6E-05 27.8 7.7 67 17-90 8-78 (107)
18 PRK09565 hypothetical protein; 84.4 5.8 0.00013 32.5 7.2 76 16-98 447-525 (533)
19 PF13826 DUF4188: Domain of un 82.8 3.9 8.4E-05 27.0 4.8 35 61-95 50-84 (117)
20 PRK11179 DNA-binding transcrip 78.8 8.7 0.00019 26.0 5.7 55 14-81 71-125 (153)
21 PRK06423 phosphoribosylformylg 77.4 10 0.00022 22.6 5.1 38 13-52 2-42 (73)
22 TIGR03792 uncharacterized cyan 72.8 21 0.00045 22.5 6.1 66 15-86 4-72 (90)
23 PF02700 PurS: Phosphoribosylf 72.6 15 0.00032 22.5 4.9 36 15-52 4-42 (80)
24 PRK05783 hypothetical protein; 69.5 22 0.00048 22.1 5.3 41 10-52 1-44 (84)
25 TIGR00302 phosphoribosylformyl 67.3 23 0.00049 21.5 5.0 38 13-52 2-42 (80)
26 PRK11169 leucine-responsive tr 66.3 34 0.00075 23.3 6.3 55 15-80 77-131 (164)
27 PF09448 MmlI: Methylmuconolac 61.1 40 0.00088 21.5 10.8 78 18-95 6-93 (112)
28 COG5227 SMT3 Ubiquitin-like pr 60.1 23 0.0005 22.6 4.0 56 16-78 37-93 (103)
29 PF03295 Pox_TAA1: Poxvirus tr 56.8 17 0.00037 21.3 2.8 33 10-43 1-42 (63)
30 PRK12864 YciI-like protein; Re 53.3 51 0.0011 20.2 7.3 65 13-87 3-74 (89)
31 KOG2591 c-Mpl binding protein, 52.8 74 0.0016 26.8 6.8 61 4-77 166-226 (684)
32 PF12594 DUF3764: Protein of u 49.4 63 0.0014 20.2 6.5 71 11-91 1-74 (86)
33 PHA00650 hypothetical protein 48.5 24 0.00053 20.9 2.6 28 70-97 6-33 (82)
34 PRK05974 phosphoribosylformylg 47.1 61 0.0013 19.5 4.4 35 16-52 5-42 (80)
35 PRK09504 sufA iron-sulfur clus 46.0 14 0.0003 24.3 1.5 91 11-108 1-98 (122)
36 PF14114 DUF4286: Domain of un 45.1 76 0.0017 19.9 7.5 41 40-82 31-71 (98)
37 COG1828 PurS Phosphoribosylfor 43.8 79 0.0017 19.6 5.0 40 11-52 1-43 (83)
38 PHA03169 hypothetical protein; 39.3 86 0.0019 25.0 5.1 60 9-75 319-378 (413)
39 PF07978 NIPSNAP: NIPSNAP ; I 37.8 93 0.002 18.8 5.9 75 15-95 3-84 (102)
40 PHA02697 hypothetical protein; 37.2 78 0.0017 23.4 4.3 41 9-52 73-114 (255)
41 PHA02087 hypothetical protein 36.4 64 0.0014 19.4 3.2 30 65-94 3-32 (83)
42 PF04673 Cyclase_polyket: Poly 35.4 39 0.00085 21.6 2.3 56 38-97 19-74 (97)
43 PF01883 DUF59: Domain of unkn 32.8 1E+02 0.0022 17.7 4.3 33 16-48 36-72 (72)
44 PF11695 DUF3291: Domain of un 32.6 1.6E+02 0.0035 20.0 9.2 79 19-97 8-94 (140)
45 PF08734 GYD: GYD domain; Int 32.5 61 0.0013 20.1 2.8 20 60-79 44-63 (91)
46 KOG2986 Uncharacterized conser 30.5 1.2E+02 0.0025 23.3 4.4 71 26-96 10-82 (313)
47 KOG2316 Predicted ATPase (PP-l 29.3 48 0.001 24.7 2.2 27 26-52 91-117 (277)
48 COG3696 Putative silver efflux 29.1 1.2E+02 0.0025 27.3 4.7 50 15-67 92-145 (1027)
49 PF02526 GBP_repeat: Glycophor 26.3 1.1E+02 0.0023 15.9 2.7 22 74-95 8-29 (38)
50 PF14270 DUF4358: Domain of un 26.0 1.2E+02 0.0026 19.0 3.5 24 10-33 43-66 (106)
51 PF03927 NapD: NapD protein; 25.6 85 0.0018 18.9 2.6 25 23-48 47-71 (79)
52 PRK12866 YciI-like protein; Re 25.5 1.8E+02 0.0039 18.2 7.2 63 15-86 4-73 (97)
53 COG0199 RpsN Ribosomal protein 24.5 38 0.00082 19.8 0.8 12 37-48 50-61 (61)
54 PF14330 DUF4387: Domain of un 24.0 1.2E+02 0.0025 19.5 3.0 35 57-91 11-46 (99)
55 PF02680 DUF211: Uncharacteriz 23.2 1.7E+02 0.0037 18.6 3.6 40 9-52 1-41 (95)
56 PF14112 DUF4284: Domain of un 23.1 77 0.0017 20.8 2.1 18 64-81 3-20 (122)
57 PF14218 COP23: Circadian osci 22.9 1.3E+02 0.0028 20.0 3.3 23 15-37 86-108 (132)
58 PF14581 SseB_C: SseB protein 22.9 1.6E+02 0.0035 18.3 3.6 69 26-104 17-85 (108)
59 KOG0125 Ataxin 2-binding prote 22.6 1.5E+02 0.0034 23.3 3.9 50 17-81 105-154 (376)
60 PF13291 ACT_4: ACT domain; PD 22.5 1.2E+02 0.0025 17.6 2.7 21 26-47 59-79 (80)
61 PRK11370 YciI-like protein; Re 22.0 2.1E+02 0.0045 17.7 7.1 22 65-86 60-82 (99)
62 cd04904 ACT_AAAH ACT domain of 21.2 1.8E+02 0.004 16.8 6.1 66 16-97 3-68 (74)
63 PF08726 EFhand_Ca_insen: Ca2+ 20.2 23 0.0005 21.1 -0.7 31 25-56 4-34 (69)
64 cd04931 ACT_PAH ACT domain of 20.0 2.2E+02 0.0048 17.6 3.7 52 13-72 14-65 (90)
No 1
>PF07876 Dabb: Stress responsive A/B Barrel Domain; InterPro: IPR013097 The stress-response A/B barrel domain is found in a class of stress-response proteins in plants. It is also found in some bacterial fructose-bisphosphate aldolase such as at the C terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus (Q9ZA13 from SWISSPROT) []. Q93NG5 from SWISSPROT is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The stress-response A/B barrel domain forms a very stable dimer. This dimer belongs to the superfamily of dimeric alpha+beta barrels in which the two beta-sheets form a beta-barrel. The two molecules in the dimer are related by a 2-fold axis parallel to helix H1 and beta-strands B3 and B4. C-terminal residues extending from the beta4 strand of each monomer wrap around and connect with the beta2 strand and alpha1 helix of the opposing monomer to form the dimer interface [, , ].The outer surface of the beta-sheets of the two molecules forms a beta-barrel-like structure defining a central pore. The function of the stress-response A/B barrel domain is unknown [, , ], but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar) []. Some proteins known to contain a stress response A/B barrel domain are listed below: - Arabidopsis thaliana At3g17210 - Arabidopsis thaliana At5g22580 -Populus tremula stable protein 1 (SP-1)(Populus species), a thermostable stress-responsive protein. - Pseudomonas hydrogenothermophila fructose 1,6-bisphosphate aldolase (cbbA). The structure of one of these proteins has been solved (Q9LUV2 from SWISSPROT) and the domain forms an alpha-beta barrel dimer [].; PDB: 3BB5_E 3FMB_A 3BDE_B 2QYC_A 1Q53_B 2Q3P_A 1Q4R_A 3BN7_A 3BGU_B 1RJJ_B ....
Probab=99.97 E-value=1.4e-30 Score=165.96 Aligned_cols=94 Identities=29% Similarity=0.639 Sum_probs=87.0
Q ss_pred EEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHH
Q 033664 12 FKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEF 88 (114)
Q Consensus 12 i~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~ 88 (114)
|+|||+||||++++ ++++.+.+.+|+++||||+++++|+|. ++...++|||++++++|+|.+++++|++||.|+++
T Consensus 1 I~Hivlfklk~~~~~~~~~~~~~~l~~l~~~ip~i~~~~~G~~~-~~~~~~~~~~~~~~~~F~s~~~l~~Y~~hp~H~~~ 79 (97)
T PF07876_consen 1 IRHIVLFKLKPDATEEEIEEVLEALRALKDKIPGIVSFEVGRNF-SPEDLAKGYDHALVSTFESEEDLDAYQTHPAHQAF 79 (97)
T ss_dssp EEEEEEEEESTTTCHHHHHHHHHHHHHHHHHSTTECEEEEEEES-STSSTSTT-SEEEEEEESSHHHHHHHHTSHHHHHH
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHHhcccCCCceEEEEEEccc-CcccccCCCcEEEEEEECCHHHHHHHHcCHHHHHH
Confidence 79999999999999 566789999999999999999999999 65556789999999999999999999999999999
Q ss_pred HHHHHhhhhceEEEeeec
Q 033664 89 SATFSAAIEKIVLLDFPT 106 (114)
Q Consensus 89 ~~~~~p~~~~~~v~D~~~ 106 (114)
++.++|++++++++||++
T Consensus 80 ~~~~~p~~~~~~~~D~~V 97 (97)
T PF07876_consen 80 VEFLKPILEDRIVFDFEV 97 (97)
T ss_dssp HHHHHGGEEEEEEEEEEE
T ss_pred HHHHHHHhCceEEEEEEC
Confidence 999999999999999985
No 2
>PF03992 ABM: Antibiotic biosynthesis monooxygenase; InterPro: IPR007138 This domain is found in monooxygenases involved in the biosynthesis of several antibiotics by Streptomyces species, which can carry out oxygenation without the assistance of any of the prosthetic groups, metal ions or cofactors normally associated with activation of molecular oxygen. The structure of ActVA-Orf6 monooxygenase from Streptomyces coelicolor (Q53908 from SWISSPROT), which is involved in actinorhodin biosynthesis, reveals a dimeric alpha+beta barrel topology []. There is also a conserved histidine that is likely to be an active site residue. In S. coelicolor SCO1909 (Q9X9W3 from SWISSPROT) this domain occurs as a repeat. This domain is also found in protein LsrG, involved in the degradation of quorum-sensing molecule autoinducer-2 [], and in several uncharacterised proteins.; PDB: 1X7V_A 3F44_A 4DN9_B 1N5T_B 1LQ9_A 1N5Q_B 1N5V_A 1N5S_A 2GFF_B 3BM7_A ....
Probab=98.52 E-value=3.2e-06 Score=50.54 Aligned_cols=74 Identities=12% Similarity=0.170 Sum_probs=59.9
Q ss_pred cEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 11 EFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 11 mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
||.-++.|+++++.. .+.+.+....+..+.||.+++.+.++.. .+-.+.++..++|.++++++..+|.|++
T Consensus 1 Mi~v~~~~~v~~~~~~~f~~~~~~~~~~~~~~~~G~~~~~~~~~~~------~~~~~~~~~~W~s~~a~~~~~~s~~~~~ 74 (78)
T PF03992_consen 1 MITVIVKFKVKPGKEEEFLAAFQELAEATLRKEPGCLSYELYRSLD------DPNRYVIVERWESEEAFQAHFKSPEFKA 74 (78)
T ss_dssp EEEEEEEEEEETTGHHHHHHHHHHHHHHHHHTSTTEEEEEEEEESS------STTEEEEEEEESSHHHHHHHHTSHHHHH
T ss_pred CEEEEEEEEeCcchHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecC------CCCEEEEEEEECCHHHHHHHHcCHHHHH
Confidence 788999999999876 3444445555545799999999999762 2235999999999999999999999999
Q ss_pred HHH
Q 033664 88 FSA 90 (114)
Q Consensus 88 ~~~ 90 (114)
+.+
T Consensus 75 ~~~ 77 (78)
T PF03992_consen 75 FQE 77 (78)
T ss_dssp HHH
T ss_pred HHh
Confidence 874
No 3
>COG1359 Uncharacterized conserved protein [Function unknown]
Probab=97.84 E-value=0.00093 Score=42.69 Aligned_cols=87 Identities=14% Similarity=0.205 Sum_probs=67.5
Q ss_pred cEEEEEEEEecCCCC-HHHHHHHHHHchh---cCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHH
Q 033664 11 EFKHLVIVKFKEGVV-VEDIVKGMKKLVS---EIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHV 86 (114)
Q Consensus 11 mi~HiVlfk~k~~~~-~~~~~~~l~~L~~---~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~ 86 (114)
|+..++..+++.+-. .+++.+.+..|.. +=||=+++.+.++. + ..-.+.++-.+.|.++++...+.|.-+
T Consensus 1 ~~~i~~~~~~~~~~~~~~~~~~~~~~lv~~sr~EeGcl~Y~l~~d~-~-----~~~~~~~~E~w~d~~A~~~H~~s~h~~ 74 (100)
T COG1359 1 MLMVIVLARFKPKPGHREEFLDLLAELVEASRAEEGCLSYELHRDP-D-----NPGRFVLIEVWEDEAALDAHLQSPHFQ 74 (100)
T ss_pred CcEEEEEEEEEeCcchHHHHHHHHHHHHHHhccCCCceEEEEEEeC-C-----CCCEEEEEEEECCHHHHHHHhCCHHHH
Confidence 355666667777666 6777666666633 47899999999987 2 334789999999999999999999999
Q ss_pred HHHHHHHhhhhceEEEe
Q 033664 87 EFSATFSAAIEKIVLLD 103 (114)
Q Consensus 87 ~~~~~~~p~~~~~~v~D 103 (114)
++.+.+.+++.....+.
T Consensus 75 ~~~~~~~~l~~~~~~i~ 91 (100)
T COG1359 75 AFVAALPPLLAGPPEIR 91 (100)
T ss_pred HHHHhChHhhcCCcEEE
Confidence 99999999987644443
No 4
>TIGR02118 conserved hypothetical protein. This model represents a small family of proteins of unknown function, each about 105 amino acids in length. Conserved sites in the multiple alignment include a pair of aromatic residues, a histidine, and an aspartate.
Probab=97.79 E-value=0.00054 Score=43.65 Aligned_cols=81 Identities=10% Similarity=0.091 Sum_probs=59.6
Q ss_pred EEEEecCCCCHHHH----HHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHHH
Q 033664 16 VIVKFKEGVVVEDI----VKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSAT 91 (114)
Q Consensus 16 Vlfk~k~~~~~~~~----~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~ 91 (114)
.+.+=|| .+.++| .+....|..++||++++.+........+ ...||.+..+.|+|.+++++-..+|+-+++.+.
T Consensus 4 ~vlyr~p-~~~e~F~~yy~~~H~pL~~~~pg~~~y~~~~~~~~~~~-~~~~d~i~el~Fds~e~~~~a~~sp~~~~~~~D 81 (100)
T TIGR02118 4 SVLYEQP-EDGAAFDHHYRDTHVPLAQKLPGLRRYAVDKIVSGLPG-SSPYYGMCELYFDSIEDFQAAFDSPEGKAAAAD 81 (100)
T ss_pred EEEcCCC-CCHHHHHHHHHhccHHHHHhCcCceEEEEecccCCCCC-CCCeeEEEEEEECCHHHHHHHHcCHHHHHHHHH
Confidence 3334445 665554 4556677778999999998776522222 345999999999999999999999998888777
Q ss_pred HHhhhhc
Q 033664 92 FSAAIEK 98 (114)
Q Consensus 92 ~~p~~~~ 98 (114)
...+.+.
T Consensus 82 ~~nF~d~ 88 (100)
T TIGR02118 82 VANFADG 88 (100)
T ss_pred HHhhcCC
Confidence 7777654
No 5
>PRK10486 autoinducer-2 (AI-2) modifying protein LsrG; Provisional
Probab=97.34 E-value=0.011 Score=37.35 Aligned_cols=86 Identities=12% Similarity=0.076 Sum_probs=65.8
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
|+.-|+-|+.|++. .+++.+.+..+ ..+=||-+.+.+.++.. .+-.+.++-.+.|.+++++....|.-++
T Consensus 1 m~~~ia~~~~kpg~-~~~~~~~l~~~~~~sr~EpGcl~y~~~~~~~------~p~~~~~~E~w~d~~Al~~H~~tph~k~ 73 (96)
T PRK10486 1 MHVTLVEINVKEDK-VDEFIEVFRQNHLGSIQEPGNLRFDVLQDPE------VPTRFYIYEAYKDEAAVAFHKTTPHYKT 73 (96)
T ss_pred CEEEEEEEEECcch-HHHHHHHHHHHHHHHhCCCCceEEEEEeCCC------CCCEEEEEEEeCCHHHHHHHhcCHHHHH
Confidence 55667777888875 45555444444 23578999999988762 3457899999999999999999999999
Q ss_pred HHHHHHhhhhceEEEe
Q 033664 88 FSATFSAAIEKIVLLD 103 (114)
Q Consensus 88 ~~~~~~p~~~~~~v~D 103 (114)
|.+.+.++++.-..+-
T Consensus 74 f~~~~~~ll~~~~~i~ 89 (96)
T PRK10486 74 CVEKLEPLMTGPRKKR 89 (96)
T ss_pred HHHHHHHHHhCCcccc
Confidence 9999999987554443
No 6
>PF11639 HapK: REDY-like protein HapK; InterPro: IPR021667 This family of proteins represents HapK, a protein of unknown function, with two homologues PigK and RedY. The monomer structure of the protein contains a four-stranded anti parallel beta-sheet, three alpha-helices and a short C-terminal tail which it uses for dimer formation []. The surface of HapK has a deep cavity with consists of a kinked helix and a beta-four strand. HapK could be involved in prodigiosin biosynthesis, specifically the binding of a bipyrrole intermediate such as HBM or MBM []. ; PDB: 2JDJ_B.
Probab=97.12 E-value=0.013 Score=37.86 Aligned_cols=82 Identities=12% Similarity=0.208 Sum_probs=60.1
Q ss_pred EEEEEEEecCCCCHHHHHHHHHHc----hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHH
Q 033664 13 KHLVIVKFKEGVVVEDIVKGMKKL----VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEF 88 (114)
Q Consensus 13 ~HiVlfk~k~~~~~~~~~~~l~~L----~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~ 88 (114)
.-|++|+||++++.+.+.+..+.- ...+|.|++|.+-+-. + ....+|+++=++...|.+++..=+..+.-+.+
T Consensus 3 ~IV~~i~Lk~gv~~~~fe~Wv~~tDy~tc~~L~sV~sF~V~r~s-~--~~~aPy~YiEiI~V~d~~~F~~dm~t~~fq~l 79 (104)
T PF11639_consen 3 VIVHLIRLKDGVDPAAFERWVRETDYPTCPSLPSVRSFEVHRAS-S--EADAPYHYIEIIDVSDMDAFGRDMATETFQRL 79 (104)
T ss_dssp EEEEEEEES-GGGHHHHHHHHHHTHHHHGGG-TTEEEEEEEE-------TT-S-SEEEEEEES-HHHHHHHHTSHHHHHH
T ss_pred EEEEEEecCCCCCHHHHHHHHHhcchhcccCCCceeeEEEEEcc-C--CCCCCccEEEEEecCCHHHHHHHhccHHHHHH
Confidence 457899999999977777655443 4469999999998864 3 34578999999999999999999999999999
Q ss_pred HHHHHhhhh
Q 033664 89 SATFSAAIE 97 (114)
Q Consensus 89 ~~~~~p~~~ 97 (114)
...+..+.+
T Consensus 80 ~~~F~~~A~ 88 (104)
T PF11639_consen 80 VAEFQQMAE 88 (104)
T ss_dssp HHHHCCCEE
T ss_pred HHHHHHHHH
Confidence 987665543
No 7
>PF07045 DUF1330: Protein of unknown function (DUF1330); InterPro: IPR010753 This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.; PDB: 2FIU_B 3HHL_A 3DCA_D 3LO3_I.
Probab=96.80 E-value=0.0097 Score=35.05 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=37.0
Q ss_pred HHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHH
Q 033664 31 KGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFS 89 (114)
Q Consensus 31 ~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~ 89 (114)
+....+..+..|=.=+..+... ..++ ...++.+++++|+|.++..++-++|++++++
T Consensus 9 ~~~~~~l~~~GG~~l~~~~~~~-~leG-~~~~~~~viieFPs~~aa~~~~~speYq~~~ 65 (65)
T PF07045_consen 9 EAVPPILEKYGGRVLARGGEPE-VLEG-DWDPDRVVIIEFPSMEAAKAWYNSPEYQALK 65 (65)
T ss_dssp HHHHHHHHHTT-EEEEECEEEE-EEES-T-SSSEEEEEEESSHHHHHHHHCSHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEECCcee-EEec-CCCCCeEEEEECCCHHHHHHHHCCHhHHhhC
Confidence 3333443344443333333333 3344 4678999999999999999999999999864
No 8
>COG2329 Uncharacterized enzyme involved in biosynthesis of extracellular polysaccharides [General function prediction only]
Probab=96.56 E-value=0.068 Score=34.51 Aligned_cols=80 Identities=13% Similarity=0.109 Sum_probs=53.9
Q ss_pred cEEEEEEEEecCCCC--HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHH
Q 033664 11 EFKHLVIVKFKEGVV--VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEF 88 (114)
Q Consensus 11 mi~HiVlfk~k~~~~--~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~ 88 (114)
|+.=+=.++.+++.. .++.-.....+...+||.+++..=++. . ...+--+++++..+|++|.+++..++.|++.
T Consensus 2 ~~v~~~~~~v~~g~~~~fe~~f~~~~~~~~~~~Gf~~~~llr~~-~---~~~~~~~~vvt~WeS~eaf~~W~~s~~~~~a 77 (105)
T COG2329 2 MAVVFNRLAVKEGAEEEFEERFANRAGLLEEMPGFIGFELLRPK-T---VEDPDEYVVVTRWESEEAFKAWRKSDEFKEA 77 (105)
T ss_pred eEEEEEEEecCCCcHHHHHHHHHHHHhhhhcCCCceEEEEeecC-c---cCCCceEEEEEEECCHHHHHhHhcCHHHHHH
Confidence 333344445555554 223233333334579999999998875 2 1233359999999999999999999999998
Q ss_pred HHHHHh
Q 033664 89 SATFSA 94 (114)
Q Consensus 89 ~~~~~p 94 (114)
-+..+.
T Consensus 78 h~~~~~ 83 (105)
T COG2329 78 HKAGRS 83 (105)
T ss_pred HHhccc
Confidence 875433
No 9
>COG3224 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.50 E-value=0.033 Score=39.54 Aligned_cols=93 Identities=12% Similarity=0.086 Sum_probs=71.4
Q ss_pred CcEEEEEEEEecCCCC--HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 10 GEFKHLVIVKFKEGVV--VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~--~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
..+.-++.=++||+.- -.+..+.+.+|..+.||=.+-.+ -.+..+..+.+..+.+|++.+.+.++..+|+-++
T Consensus 9 q~vs~~ia~rvkPg~ea~~law~~ei~~l~~~~PG~igS~i-----i~p~~G~~~e~~~ifRFD~~enl~aW~~SpeR~~ 83 (195)
T COG3224 9 QPVSLLIARRVKPGHEAIFLAWQEEIKALARKYPGYIGSGI-----IRPQAGDRFEYETIFRFDNLENLAAWIHSPERRA 83 (195)
T ss_pred cceEEEEEeecCCCcHHHHHHHHHHHHHHHHhCCCccccCc-----cccCCCCceeEEEEEEecCHHHHHHhhcCHHHHH
Confidence 4455555567888877 47788889999999999654433 2223467789999999999999999999999999
Q ss_pred HHHHHHhhhhceEEEeeecC
Q 033664 88 FSATFSAAIEKIVLLDFPTV 107 (114)
Q Consensus 88 ~~~~~~p~~~~~~v~D~~~~ 107 (114)
..+.-..+.++-.......+
T Consensus 84 wl~~~e~~~ee~~~~~~~~G 103 (195)
T COG3224 84 WLERGENLVEEFVGKQRTEG 103 (195)
T ss_pred HHHHhhccccccchhhcccc
Confidence 99988888776666555444
No 10
>PRK13315 heme-degrading monooxygenase IsdG; Provisional
Probab=95.67 E-value=0.28 Score=31.91 Aligned_cols=74 Identities=12% Similarity=0.144 Sum_probs=51.9
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHH--chhcCCcEeEEEeecccCChhhhcCccc-EEEEEEECCHHhHHHhhcChhHHH
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKK--LVSEIDAVKSFEWGQDVEGQEMLRQGFT-HAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~--L~~~iP~v~~~~~G~~~~s~~~~~~~~~-~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
|+.=+--|+++++.. +++++.+.. .....||-+.+.+-++. . ..+++ +......+|+++++++..+++|++
T Consensus 1 M~Vv~Nr~~V~~g~~-~~fe~rf~r~~~le~~pGFv~~~lLr~~-~----~~~~~~~~v~T~Wes~eaF~aW~~S~aF~~ 74 (107)
T PRK13315 1 MIVVTNRITVKKGFA-AKMAPRFTKGGPLEELEGFHKVEVWLID-N----DDEYDEMYVNMWWETEEDFEAWRNSDAFKE 74 (107)
T ss_pred CEEEEEEEEeCCCcH-HHHHHHHccCCcccCCCCeEEEEEeccC-C----CCCCceEEEEEEECCHHHHHHHhcCHHHHH
Confidence 444455677766644 444444432 33569999999998866 2 23454 456899999999999999999988
Q ss_pred HHH
Q 033664 88 FSA 90 (114)
Q Consensus 88 ~~~ 90 (114)
.-+
T Consensus 75 AH~ 77 (107)
T PRK13315 75 AHK 77 (107)
T ss_pred Hhh
Confidence 875
No 11
>PF07110 EthD: EthD domain; InterPro: IPR009799 This family consists of several bacterial sequences which are related to the EthD protein of Rhodococcus ruber (Q93EX2 from SWISSPROT). R. ruber (formerly Gordonia terrae) IFP 2001 is one of a few bacterial strains able to degrade ethyl tert-butyl ether (ETBE), which is a major pollutant from gasoline. This strain was found to undergo a spontaneous 14.3-kbp chromosomal deletion, which results in the loss of the ability to degrade ETBE. Sequence analysis of the region corresponding to the deletion revealed the presence of a gene cluster, ethABCD, encoding a ferredoxin reductase (EthA), a cytochrome P-450 (EthB), a ferredoxin (EthC), and a 10kDa protein of unknown function (EthD), respectively. Upstream of ethABCD lies ethR, which codes for a putative positive transcriptional regulator of the AraC/XylS family. Transformation of the ETBE-negative mutant by a plasmid carrying the ethRABCD genes restored the ability to degrade ETBE. Complementation was abolished if the plasmid carried ethRABC only demonstrating that EthD is essential for the ETBE degradation system [].; PDB: 3BF4_B 2FTR_A.
Probab=95.57 E-value=0.12 Score=31.73 Aligned_cols=39 Identities=10% Similarity=-0.002 Sum_probs=31.1
Q ss_pred hhcCcccEEEEEEECCHHhHHHhhcChhHHH-HHHHHHhh
Q 033664 57 MLRQGFTHAFLMTFNKKEDYTTFASHPSHVE-FSATFSAA 95 (114)
Q Consensus 57 ~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~-~~~~~~p~ 95 (114)
.....||-+..+.|+|.+++.+...+|+.++ +.+.-..+
T Consensus 52 ~~~~~~Dgi~e~~f~~~e~~~~~~~~p~~~~~l~~De~~F 91 (95)
T PF07110_consen 52 GDPPDYDGIAELWFDSLEALQAAFADPEYQAALRADEANF 91 (95)
T ss_dssp TC--SEEEEEEEEECCHHHHHHHHCSHHCHHHHHHHHHHC
T ss_pred CCCCCEeEEEEEEECCHHHHHHHHCCHHHHHHHhccHHHH
Confidence 4468999999999999999999999999998 55444443
No 12
>COG5470 Uncharacterized conserved protein [Function unknown]
Probab=95.39 E-value=0.23 Score=31.73 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=51.0
Q ss_pred EEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcc--cEEEEEEECCHHhHHHhhcChhHHHHHHH
Q 033664 14 HLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGF--THAFLMTFNKKEDYTTFASHPSHVEFSAT 91 (114)
Q Consensus 14 HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~--~~~l~~~F~s~~al~~Y~~hP~H~~~~~~ 91 (114)
-|+..+.++....++........-.+.-|=-=++.|... ..+ +.| +-.++++|+|.++...+-++|+++++...
T Consensus 6 ~Ia~vdv~D~e~y~~Y~~~~~~a~~~~Ggr~LvRGG~v~-~lE---G~w~ptr~vviEFps~~~ar~~y~SpeYq~a~~~ 81 (96)
T COG5470 6 WIADVDVRDPEQYKDYVSKAKPAIEKFGGRYLVRGGEVE-TLE---GEWRPTRNVVIEFPSLEAARDCYNSPEYQAAAAI 81 (96)
T ss_pred EEEEEeecCHHHHHHHHHHhHHHHHHhCCeeEeeCCCee-ecc---CCCCcccEEEEEcCCHHHHHHHhcCHHHHHHHHH
Confidence 355556655544344443333332333332223344433 333 334 57899999999999999999999999874
Q ss_pred -HHhhhhceEEEe
Q 033664 92 -FSAAIEKIVLLD 103 (114)
Q Consensus 92 -~~p~~~~~~v~D 103 (114)
-...-...+++|
T Consensus 82 Rq~~ad~~~iiVe 94 (96)
T COG5470 82 RQAAADSEIIIVE 94 (96)
T ss_pred HhhcccccEEEEe
Confidence 444444555555
No 13
>PRK13314 heme-degrading monooxygenase IsdG; Provisional
Probab=95.23 E-value=0.28 Score=31.92 Aligned_cols=92 Identities=11% Similarity=0.108 Sum_probs=60.1
Q ss_pred EEEEEecCCCCHHHHHHHHH--HchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHHH-
Q 033664 15 LVIVKFKEGVVVEDIVKGMK--KLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSAT- 91 (114)
Q Consensus 15 iVlfk~k~~~~~~~~~~~l~--~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~- 91 (114)
+=-|+++++.. +++.+.+. .+.++.||-.++.+-++. . ....-.+.+....+|++++++|..+++|++.-+.
T Consensus 5 ~Nri~V~~G~~-~~~~erF~r~~~ie~~pGF~~~~vLr~~-~---~~~~~~y~v~T~Wes~eaF~aW~~S~aFr~AH~~~ 79 (107)
T PRK13314 5 TNTAKITKGNG-HKLIDRFNKVGKVETMPGFLGLEVLLTQ-N---TVDYDEVTISTRWNAKEDFQGWTKSPAFKAAHSHQ 79 (107)
T ss_pred EEEEEeCCCch-HHHHHHhccCCccccCCCcEEEEEecCC-C---CCCCceEEEEEEECCHHHHHHHHcCHHHHHHHhcc
Confidence 33456666644 44444442 233569999999998876 2 2233357778999999999999999998887652
Q ss_pred ---HHhhhhceEEEeeecCCCCCC
Q 033664 92 ---FSAAIEKIVLLDFPTVLGKAP 112 (114)
Q Consensus 92 ---~~p~~~~~~v~D~~~~~~~~~ 112 (114)
-.|++. .-+.-|++.+++.|
T Consensus 80 ~~~~~~i~~-~~i~~yeV~~~~~~ 102 (107)
T PRK13314 80 GGMPDYILD-NKISYYDVKVVRMP 102 (107)
T ss_pred CCCCCcccc-CeeEEEEEEEeecc
Confidence 233333 55566666665544
No 14
>PRK13316 heme-degrading monooxygenase IsdG; Provisional
Probab=95.22 E-value=0.54 Score=31.32 Aligned_cols=93 Identities=13% Similarity=0.210 Sum_probs=60.5
Q ss_pred EEEEEecCCCCHHHHHHHHHH---------chhcCCcEeEEEeecccCChhhhcCccc-EEEEEEECCHHhHHHhhcChh
Q 033664 15 LVIVKFKEGVVVEDIVKGMKK---------LVSEIDAVKSFEWGQDVEGQEMLRQGFT-HAFLMTFNKKEDYTTFASHPS 84 (114)
Q Consensus 15 iVlfk~k~~~~~~~~~~~l~~---------L~~~iP~v~~~~~G~~~~s~~~~~~~~~-~~l~~~F~s~~al~~Y~~hP~ 84 (114)
+=-|+++++. .+++++.+.. ..+++||-+++.+=++.. ...+|+ +...+.-+|+++++++..+++
T Consensus 5 ~Nri~V~~g~-a~~~~~rF~~r~~~g~~~~~ie~~pGFv~f~lL~~~~----~~~~~~e~~V~T~WeSeeaF~aW~~Sda 79 (121)
T PRK13316 5 TNTIKVEKGA-AEHVIRQFTGANGDGHPTKDIAEVEGFLGFELWHSKP----EDKDYEEVVVTSKWESEEAQRNWVKSDS 79 (121)
T ss_pred EEEEEeCCCc-HHHHHHHHhccCcccccccchhcCCCceEEEEeeccC----CCCCceEEEEEEEECCHHHHHHHhcCHH
Confidence 3345665543 5666666654 556799999999876541 123454 677889999999999999998
Q ss_pred HHHHHHHHH---------hhhhceEEEeeecCCCCCC
Q 033664 85 HVEFSATFS---------AAIEKIVLLDFPTVLGKAP 112 (114)
Q Consensus 85 H~~~~~~~~---------p~~~~~~v~D~~~~~~~~~ 112 (114)
+++.-+.-+ +..-+.-+.-|++...+.|
T Consensus 80 Fr~AH~~~~~~~~~~~~~~~i~~n~i~~yeV~~~~~~ 116 (121)
T PRK13316 80 FKKAHGRTKDTREQREDRKGIVGNAIARFEVVHVQNP 116 (121)
T ss_pred HHHHHhccCCCccccCCCCcccCceEEEEEEEEecCc
Confidence 888765321 2333344555666555444
No 15
>PF01037 AsnC_trans_reg: AsnC family; InterPro: IPR019887 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One such family is the AsnC/Lrp subfamily []. The Lrp family of transcriptional regulators appears to be widely distributed among bacteria and archaea, as an important regulatory system of the amino acid metabolism and related processes []. Members of the Lrp family are small DNA-binding proteins with molecular masses of around 15 kDa. Target promoters often contain a number of binding sites that typically lack obvious inverted repeat elements, and to which binding is usually co-operative. LrpA from Pyrococcus furiosus is the first Lrp-like protein to date of which a three-dimensional structure has been solved. In the crystal structure LrpA forms an octamer consisting of four dimers. The structure revealed that the N-terminal part of the protein consists of a helix-turn-helix (HTH) domain, a fold generally involved in DNA binding. The C terminus of Lrp-like proteins has a beta-fold, where the two alpha-helices are located at one side of the four-stranded antiparallel beta-sheet. LrpA forms a homodimer mainly through interactions between the beta-strands of this C-terminal domain, and an octamer through further interactions between the second alpha-helix and fourth beta-strand of the motif. Hence, the C-terminal domain of Lrp-like proteins appears to be involved in ligand-response and activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2DJW_F 2GQQ_A 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2CG4_B 2DBB_B 1I1G_A ....
Probab=93.95 E-value=0.49 Score=27.54 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=36.8
Q ss_pred EEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhc
Q 033664 16 VIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 16 Vlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
|+.+++++. +...+-...|. .+|+|..+.. .++.||+.+.+.+.|.++++.+..
T Consensus 1 V~V~~~~~~--~~~~~~~~~l~-~~p~V~~~~~---------vtG~~d~~~~v~~~d~~~l~~~i~ 54 (74)
T PF01037_consen 1 VLVKVEPGH--DAYDEFAEALA-EIPEVVECYS---------VTGEYDLILKVRARDMEELEEFIR 54 (74)
T ss_dssp EEEEESTTG--THHHHHHHHHH-TSTTEEEEEE---------ESSSSSEEEEEEESSHHHHHHHHH
T ss_pred CEEEEcCCC--chHHHHHHHHH-cCCCEEEEEE---------EeCCCCEEEEEEECCHHHHHHHHH
Confidence 456666664 23333344443 4788888721 347899999999999999998743
No 16
>PRK13313 heme-degrading monooxygenase IsdI; Provisional
Probab=92.30 E-value=1.6 Score=28.51 Aligned_cols=72 Identities=8% Similarity=0.207 Sum_probs=50.0
Q ss_pred EEEEEEEEecCCCCHHHHHHHHH---HchhcCCcEeEEEeecccCChhhhcCccc-EEEEEEECCHHhHHHhhcChhHHH
Q 033664 12 FKHLVIVKFKEGVVVEDIVKGMK---KLVSEIDAVKSFEWGQDVEGQEMLRQGFT-HAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 12 i~HiVlfk~k~~~~~~~~~~~l~---~L~~~iP~v~~~~~G~~~~s~~~~~~~~~-~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
+.-+=-|+++++.. +++.+.+. .| ++.||-..+.+-++. . ..+|| +......+|+++++++..++++++
T Consensus 2 ~v~~Nri~V~~G~~-~~~~~rF~~r~~i-e~~pGF~~~~vLr~~-~----~~~~~~~~V~T~Wesee~F~~Wt~SdaF~~ 74 (108)
T PRK13313 2 FMAENRLQLQKGSA-EETIERFYNRQGI-ETIEGFQQMFVTKTL-N----TEDTDEVKILTIWESEDSFNNWLNSDVFKE 74 (108)
T ss_pred EEEEEEEEeCCCcH-HHHHHHHcccCCc-ccCCCeEEEEEecCC-C----CCCceEEEEEEEECCHHHHHHHhcCHHHHH
Confidence 33333466666643 34444331 35 579999999999876 2 23555 567788999999999999998888
Q ss_pred HHH
Q 033664 88 FSA 90 (114)
Q Consensus 88 ~~~ 90 (114)
.-+
T Consensus 75 AH~ 77 (108)
T PRK13313 75 AHK 77 (108)
T ss_pred HHh
Confidence 765
No 17
>PRK13312 heme-degrading monooxygenase IsdG; Provisional
Probab=91.84 E-value=2.1 Score=27.84 Aligned_cols=67 Identities=13% Similarity=0.287 Sum_probs=48.1
Q ss_pred EEEecCCCCHHHHHHHH---HHchhcCCcEeEEEeecccCChhhhcCcc-cEEEEEEECCHHhHHHhhcChhHHHHHH
Q 033664 17 IVKFKEGVVVEDIVKGM---KKLVSEIDAVKSFEWGQDVEGQEMLRQGF-THAFLMTFNKKEDYTTFASHPSHVEFSA 90 (114)
Q Consensus 17 lfk~k~~~~~~~~~~~l---~~L~~~iP~v~~~~~G~~~~s~~~~~~~~-~~~l~~~F~s~~al~~Y~~hP~H~~~~~ 90 (114)
-|+++++.. +++.+.+ ..| ++.||-..+.+-++. .+ .++ .+......+|+++++++..++++.+.-+
T Consensus 8 ri~V~~G~~-~~~e~rF~~r~~i-e~~pGF~~~~vLr~~-~~----~~~d~y~v~T~WeseeaFeaW~~SdaFr~AH~ 78 (107)
T PRK13312 8 RLTLTKGTA-KDIIERFYTRHGI-ETLEGFDGMFVTQTL-EQ----EDFDEVKILTVWKSKQAFTDWLKSDVFKAAHK 78 (107)
T ss_pred EEEeCCCcH-HHHHHHHcccCCc-ccCCCeEEEEEeecC-CC----CCceEEEEEEEECCHHHHHHHhcCHHHHHHHh
Confidence 356666544 4444444 234 579999999998876 32 234 4778889999999999999998888764
No 18
>PRK09565 hypothetical protein; Reviewed
Probab=84.35 E-value=5.8 Score=32.52 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=61.5
Q ss_pred EEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHHHH
Q 033664 16 VIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATF 92 (114)
Q Consensus 16 Vlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~~ 92 (114)
.+|++|++-. .+.|.+.+.-|+ ...|.+.-..=+|.. ..-++++.++.+|.++...|-.+.+..+-++.=
T Consensus 447 m~Y~Vk~~h~~eF~~~F~~V~~~L~-~~~G~~~~~L~~~v~------d~~~~~I~seW~~~e~~~~F~~S~~f~etv~~G 519 (533)
T PRK09565 447 MFYTVKPDYREDFVETFDTVGGLLA-EMDGHRETDLLVNRD------DENDMFIASQWDSKEDAMAFFRSDAFRETVEWG 519 (533)
T ss_pred eEEEecCchHHHHHHHHHHHHHHHh-hcCCcccceeeeecC------CchhcEEeeeccCHHHHHHHHhhhHHHHHHHhh
Confidence 4678899887 577777777777 688888887777773 334899999999999999999999999988877
Q ss_pred Hhhhhc
Q 033664 93 SAAIEK 98 (114)
Q Consensus 93 ~p~~~~ 98 (114)
+.++++
T Consensus 520 k~il~~ 525 (533)
T PRK09565 520 RDVLAD 525 (533)
T ss_pred hHhhcC
Confidence 777654
No 19
>PF13826 DUF4188: Domain of unknown function (DUF4188)
Probab=82.77 E-value=3.9 Score=27.04 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=29.9
Q ss_pred cccEEEEEEECCHHhHHHhhcChhHHHHHHHHHhh
Q 033664 61 GFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAA 95 (114)
Q Consensus 61 ~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~~~p~ 95 (114)
+-+.+++.-|.|.|+|.+|..++.|...-+.+...
T Consensus 50 ~~~~~~v~YwRs~e~L~~fA~~~~H~~aW~~fn~~ 84 (117)
T PF13826_consen 50 PRTIMLVQYWRSFEDLHRFAHDPPHRPAWRWFNKR 84 (117)
T ss_pred CCceEEEEEECCHHHHHHHHCCChHHHHHHHHHHH
Confidence 34789999999999999999999999988765433
No 20
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=78.85 E-value=8.7 Score=25.96 Aligned_cols=55 Identities=7% Similarity=0.036 Sum_probs=37.3
Q ss_pred EEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhc
Q 033664 14 HLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 14 HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
=++.++++++...+++.+. |. ++|+|..+.. .+++||+.+.+.+.|.++++.+..
T Consensus 71 a~v~v~v~~~~~~~~~~~~---l~-~~p~V~~~~~---------~tG~~dl~~~v~~~d~~~l~~~~~ 125 (153)
T PRK11179 71 CFIGIILKSAKDYPSALAK---LE-SLDEVVEAYY---------TTGHYSIFIKVMCRSIDALQHVLI 125 (153)
T ss_pred EEEEEEEcccccHHHHHHH---Hh-CCCCEEEEEE---------cccCCCEEEEEEECCHHHHHHHHH
Confidence 3556677644334444443 43 4888887732 236799999999999999998753
No 21
>PRK06423 phosphoribosylformylglycinamidine synthase; Provisional
Probab=77.45 E-value=10 Score=22.59 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=31.4
Q ss_pred EEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 13 KHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 13 ~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
.+.|...+||+.. .+.+.+.+..| + ++++.+++.|+-.
T Consensus 2 ~~~v~V~~k~gv~Dp~G~ti~~~l~~l-g-~~~v~~Vr~~k~~ 42 (73)
T PRK06423 2 KFKVEVTYKPGVEDPEALTILKNLNIL-G-YNGIKGVSISKVY 42 (73)
T ss_pred eEEEEEEECCCCcChHHHHHHHHHHHc-C-CCCcceEEEEEEE
Confidence 5778889999998 57888888887 4 8888888888866
No 22
>TIGR03792 uncharacterized cyanobacterial protein, TIGR03792 family. Members of this family are found, no more than one to a genome, exclusively in (but not universal to) the Cyanobacteria. These proteins are small, 100-150 amino acids. The function is unknown.
Probab=72.75 E-value=21 Score=22.48 Aligned_cols=66 Identities=11% Similarity=0.022 Sum_probs=48.3
Q ss_pred EEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHH
Q 033664 15 LVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHV 86 (114)
Q Consensus 15 iVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~ 86 (114)
+..|+.+|+.. .+...++...+-.+.||-++..+..+..+ .=.+.+++.-+|.++.++.-.+..-.
T Consensus 4 ~l~~~V~p~~~~~f~~a~~~~w~~~l~~~~GFlg~ev~~~~e~------pee~~llI~WeS~E~WK~i~~~~~~~ 72 (90)
T TIGR03792 4 WLRFKVPPEDREAFLEADEEIWTPWLAKQPGFLGKEVWWDPEK------PEEGVLLIRWESREQWKAIPQEELEA 72 (90)
T ss_pred EEEEeeChhhHHHHHHHHHHHHHHHHHhCCCccceEEEecCCC------CCEEEEEEEEcCHHHHhcCCHHHHHH
Confidence 45568877765 45555565677778999999999988732 22678899999999999887765433
No 23
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=72.61 E-value=15 Score=22.53 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=27.5
Q ss_pred EEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 15 LVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 15 iVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
-|..++|+++. .+++.+.|..| + ..+|.++++|+-.
T Consensus 4 ~V~V~~K~gvlDPqG~ai~~al~~l-G-~~~v~~Vr~GK~~ 42 (80)
T PF02700_consen 4 RVEVTLKPGVLDPQGEAIKRALHRL-G-YDGVKDVRVGKYI 42 (80)
T ss_dssp EEEEEE-TTS--HHHHHHHHHHHHT-T--TTEEEEEEEEEE
T ss_pred EEEEEECCCCcCcHHHHHHHHHHHc-C-CcccCcEEEEEEE
Confidence 46778999987 57888899887 3 8889999999966
No 24
>PRK05783 hypothetical protein; Provisional
Probab=69.50 E-value=22 Score=22.06 Aligned_cols=41 Identities=15% Similarity=0.082 Sum_probs=31.9
Q ss_pred CcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 10 GEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
||+.=-|..++|+++- .+.+.++|..| + ..+|.++++|+-.
T Consensus 1 M~~k~~V~V~lK~gVlDPqG~aI~~aL~~l-g-~~~V~~VRvGK~i 44 (84)
T PRK05783 1 MKYYVELIIINKDSVRDPEGETIQRYVIER-Y-TGNIIEVRAGKYL 44 (84)
T ss_pred CcEEEEEEEEECCCCcCchHHHHHHHHHHc-C-CCCcceEEeeEEE
Confidence 3556667889999986 57788888777 3 6779999999866
No 25
>TIGR00302 phosphoribosylformylglycinamidine synthase, purS protein. In species such as Bacillus subtilis in which FGAM synthetase is split into two ORFs purL and purQ, this small protein, previously called yexA, is required for FGAM synthetase activity. Although the article does not make it clear whether this is a subunit or an accessory protein, it is encoded as part of the operon, which suggests stochiometric amounts, = subunit.
Probab=67.26 E-value=23 Score=21.46 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=29.4
Q ss_pred EEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 13 KHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 13 ~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
++-|...+|++.. .+.+.+.+..| .++++.+++.|+-.
T Consensus 2 ~~~I~V~~k~gV~Dp~G~ti~~~l~~l--g~~~v~~Vr~~k~~ 42 (80)
T TIGR00302 2 KVEVYIRLKKGVLDPEGAAIQRALALL--GYNEVKDVRTGKVI 42 (80)
T ss_pred EEEEEEEECCCCcChHHHHHHHHHHHc--CCCCcceEEEEEEE
Confidence 4567778999988 57888888887 37878888888755
No 26
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=66.30 E-value=34 Score=23.30 Aligned_cols=55 Identities=7% Similarity=0.166 Sum_probs=35.3
Q ss_pred EEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 15 LVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 15 iVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
+|.+++++... +.+.+....|. .+|+|..+.. .+++||+.+.+.+.|.++++.+.
T Consensus 77 ~v~i~~~~~~~-~~~~~~~~~l~-~~p~V~~~~~---------vtG~~d~~l~v~~~~~~~l~~~l 131 (164)
T PRK11169 77 FVEITLNRGAP-DVFEQFNAAVQ-KLEEIQECHL---------VSGDFDYLLKTRVPDMSAYRKLL 131 (164)
T ss_pred EEEEEEcCCCh-HHHHHHHHHHh-cCcceeeeee---------ecCCCCEEEEEEECCHHHHHHHH
Confidence 45566654332 22222233443 4788887632 24789999999999999998876
No 27
>PF09448 MmlI: Methylmuconolactone methyl-isomerase ; InterPro: IPR018566 4-methylmuconolactone methyl-isomerase (MmlI) is a short, approx 115 residue, protein of two alpha helices and four beta strands. It is involved in the catabolism of methyl-substituted aromatics via a modified oxo-adipate pathway in bacteria. The enzyme appears to be monomeric in some species [] and tetrameric in others []. The known structure shows two copies of the protein form a dimeric alpha beta barrel. ; PDB: 2IFX_A 3HDS_A 3HF5_A 3HFK_D.
Probab=61.09 E-value=40 Score=21.46 Aligned_cols=78 Identities=8% Similarity=-0.009 Sum_probs=42.9
Q ss_pred EEecCCC-CHHHHHHHHHH---chhcCCcEeEEEeecccCChhhh------cCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 18 VKFKEGV-VVEDIVKGMKK---LVSEIDAVKSFEWGQDVEGQEML------RQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 18 fk~k~~~-~~~~~~~~l~~---L~~~iP~v~~~~~G~~~~s~~~~------~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
+-.||+. +.+++.+.+.. |...+||+-.+++..-...|.+. -+.-|-.=.+=|+|.++++.|+++..-++
T Consensus 6 llvkpe~ms~e~fr~eclrh~ems~~vpgl~kYEVRLvA~~PtDtHVPffDvg~vdAIGECWF~~e~~y~~Ym~SdiRKa 85 (112)
T PF09448_consen 6 LLVKPEGMSDETFRAECLRHFEMSAGVPGLHKYEVRLVAEQPTDTHVPFFDVGHVDAIGECWFENEAQYQRYMASDIRKA 85 (112)
T ss_dssp EEE--TTS-HHHHHHHHHHHHHHCTT-TT-SEEEEEEEEE-----SS-B-------EEEEEEESSHHHHHHHHH-HHHHH
T ss_pred EEeccccCCHHHHHHHHHHHHHhhcCCCcceeeeEEEecCCCCcccccccccCCcchhhhhhhcCHHHHHHHHHHHHHHH
Confidence 3344443 47777766543 44569999887765433111111 13345566788999999999999999888
Q ss_pred HHHHHHhh
Q 033664 88 FSATFSAA 95 (114)
Q Consensus 88 ~~~~~~p~ 95 (114)
+-+.=+-+
T Consensus 86 WFEHGKtF 93 (112)
T PF09448_consen 86 WFEHGKTF 93 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHhccee
Confidence 76643333
No 28
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=60.10 E-value=23 Score=22.56 Aligned_cols=56 Identities=5% Similarity=0.226 Sum_probs=38.7
Q ss_pred EEEEecCCCCHHHHHHHHHHchhc-CCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHH
Q 033664 16 VIVKFKEGVVVEDIVKGMKKLVSE-IDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTT 78 (114)
Q Consensus 16 Vlfk~k~~~~~~~~~~~l~~L~~~-iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~ 78 (114)
++|+.|..++...+.+++.+=.++ ...++-+.=|+++ .++...+.+| |++-+.+++
T Consensus 37 lfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI-~~dqTP~dld------mEdnd~iEa 93 (103)
T COG5227 37 LFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRI-DLDQTPGDLD------MEDNDEIEA 93 (103)
T ss_pred EEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceec-CCCCChhhcC------CccchHHHH
Confidence 689999998888888777765554 6677778888888 5555444443 455555554
No 29
>PF03295 Pox_TAA1: Poxvirus trans-activator protein A1 C-terminal; InterPro: IPR004975 Late transcription factor VLTF-2, acts with RNA polymerase to initiate transcription from late gene promoters [].
Probab=56.76 E-value=17 Score=21.29 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.4
Q ss_pred CcEEEEEEEEecCCCC---------HHHHHHHHHHchhcCCcE
Q 033664 10 GEFKHLVIVKFKEGVV---------VEDIVKGMKKLVSEIDAV 43 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~---------~~~~~~~l~~L~~~iP~v 43 (114)
.||+|.|.++=.|.++ .+++++.++.|++ -.||
T Consensus 1 smik~~vALREEPKisLLPLv~Y~~Pe~Vi~iIN~lR~-keGv 42 (63)
T PF03295_consen 1 SMIKSHVALREEPKISLLPLVFYEDPEEVINIINELRN-KEGV 42 (63)
T ss_pred CcccceeeeccCCcceEEeeeeccCHHHHHHHHHHhhh-ccCc
Confidence 3899999999888887 6899999999976 5555
No 30
>PRK12864 YciI-like protein; Reviewed
Probab=53.25 E-value=51 Score=20.23 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=38.4
Q ss_pred EEEEEEEecCCCC--HHHHH----HHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcC-hhH
Q 033664 13 KHLVIVKFKEGVV--VEDIV----KGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASH-PSH 85 (114)
Q Consensus 13 ~HiVlfk~k~~~~--~~~~~----~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~h-P~H 85 (114)
.-+|.+..+|+.. +.++. +-++.|..+ |..-. .|+-. . ..+ ..++++++|.++.+++... |..
T Consensus 3 ~f~v~~~d~p~~~~~R~~~r~~H~~~l~~~~~~--G~~~~-~Gp~~-~---~~g---~~~i~~a~s~eea~~~~~~DPy~ 72 (89)
T PRK12864 3 KFVLWGTYCEDALEKRAPFREAHLDRLAKLKEQ--GILIT-LGPTK-D---LTY---VFGIFEAEDEETVRQLIEADPYW 72 (89)
T ss_pred EEEEEEEeCCCcHHHHHHhHHHHHHHHHHHHhC--CeEEE-ecCCC-C---CCC---EEEEEEeCCHHHHHHHHHcCCch
Confidence 5678888888754 33343 334444332 44433 47755 2 122 2347799999999997664 765
Q ss_pred HH
Q 033664 86 VE 87 (114)
Q Consensus 86 ~~ 87 (114)
++
T Consensus 73 ~a 74 (89)
T PRK12864 73 QN 74 (89)
T ss_pred hc
Confidence 53
No 31
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=52.79 E-value=74 Score=26.81 Aligned_cols=61 Identities=21% Similarity=0.278 Sum_probs=43.7
Q ss_pred cccccCCcEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHH
Q 033664 4 GEEAAMGEFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYT 77 (114)
Q Consensus 4 ~~~~~~~mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~ 77 (114)
||-....--|-||++|=-++++..+.+++|..= +-+|-+.+++++-|. .|+++|+|..|-+
T Consensus 166 gekVrp~~kRcIvilREIpettp~e~Vk~lf~~-encPk~iscefa~N~------------nWyITfesd~DAQ 226 (684)
T KOG2591|consen 166 GEKVRPNHKRCIVILREIPETTPIEVVKALFKG-ENCPKVISCEFAHND------------NWYITFESDTDAQ 226 (684)
T ss_pred ccccccCcceeEEEEeecCCCChHHHHHHHhcc-CCCCCceeeeeeecC------------ceEEEeecchhHH
Confidence 444444556789999998998866666555552 459999999999876 2788888765543
No 32
>PF12594 DUF3764: Protein of unknown function (DUF3764); InterPro: IPR022240 This family of proteins is found in bacteria. Proteins in this family are typically between 89 and 101 amino acids in length.
Probab=49.43 E-value=63 Score=20.18 Aligned_cols=71 Identities=11% Similarity=0.052 Sum_probs=46.4
Q ss_pred cEEEEEEEEecCCCC-HHHHHHHH--HHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 11 EFKHLVIVKFKEGVV-VEDIVKGM--KKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 11 mi~HiVlfk~k~~~~-~~~~~~~l--~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
|..||+-|++..+-. -.++.+.- ..+ .+-=||+.+-.|.... .+-..+++...+. ..++.+..+|. +
T Consensus 1 meTtV~tf~is~~F~eW~~~fDs~e~~~~-~~e~gIk~lyrGvskd------Dp~kv~vI~Qa~e-gv~~~f~~~~~--~ 70 (86)
T PF12594_consen 1 METTVFTFKISVPFEEWAKIFDSHEQQAM-HKEFGIKSLYRGVSKD------DPQKVIVIHQAPE-GVMQKFFEDNE--E 70 (86)
T ss_pred CeEEEEEEEecCCHHHHHHHhCcHhhHHH-HHhcCCeEEEEecccC------CCceEEEEEecCH-HHHHHHHhCcH--H
Confidence 578888888864443 22222222 333 2356899999998763 2236788888888 88888888887 4
Q ss_pred HHHH
Q 033664 88 FSAT 91 (114)
Q Consensus 88 ~~~~ 91 (114)
.++.
T Consensus 71 ~I~~ 74 (86)
T PF12594_consen 71 WIAS 74 (86)
T ss_pred HHHh
Confidence 4443
No 33
>PHA00650 hypothetical protein
Probab=48.47 E-value=24 Score=20.93 Aligned_cols=28 Identities=32% Similarity=0.548 Sum_probs=23.8
Q ss_pred ECCHHhHHHhhcChhHHHHHHHHHhhhh
Q 033664 70 FNKKEDYTTFASHPSHVEFSATFSAAIE 97 (114)
Q Consensus 70 F~s~~al~~Y~~hP~H~~~~~~~~p~~~ 97 (114)
....++|++....|+|-+|.++++..+.
T Consensus 6 intredldalagtpahgefldylrgsit 33 (82)
T PHA00650 6 INTREDLDALAGTPAHGEFLDYLRGSIT 33 (82)
T ss_pred cccHHHHHHhcCCCcchhHHHHHhhhcc
Confidence 4678999999999999999998876653
No 34
>PRK05974 phosphoribosylformylglycinamidine synthase subunit PurS; Reviewed
Probab=47.12 E-value=61 Score=19.50 Aligned_cols=35 Identities=31% Similarity=0.425 Sum_probs=26.3
Q ss_pred EEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 16 VIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 16 Vlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
|...+|++.. .+.+.+.+..| .++++.+++.|+-.
T Consensus 5 V~V~~k~gv~Dp~G~ai~~~l~~l--g~~~v~~Vr~~k~~ 42 (80)
T PRK05974 5 VTVTLKEGVLDPQGQAIKGALGSL--GYDGVEDVRQGKYF 42 (80)
T ss_pred EEEEECCCCcChHHHHHHHHHHHc--CCCCcceEEEEEEE
Confidence 5567899988 57888888886 37777777777755
No 35
>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional
Probab=45.95 E-value=14 Score=24.32 Aligned_cols=91 Identities=10% Similarity=0.030 Sum_probs=43.4
Q ss_pred cEEEEEEEEecCCCC-----HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCH-HhHHH-hhcCh
Q 033664 11 EFKHLVIVKFKEGVV-----VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKK-EDYTT-FASHP 83 (114)
Q Consensus 11 mi~HiVlfk~k~~~~-----~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~-~al~~-Y~~hP 83 (114)
|..|+-+|..++..- -+...+.++.|..+.|+-..++++-... ++ .||.+.+.. .+. ..-+. +..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~I~iT~~A~~~i~~l~~~~~~~~~LRi~v~~g---GC-sG~~Y~~~l--~~e~~~~D~v~e~~g 74 (122)
T PRK09504 1 MDMHSGTFNPDDFAWQGLTLTPAAAAHIRELMAKQPGMKGVRLGVKQT---GC-AGFGYVLDS--VSEPDKDDLVFEHDG 74 (122)
T ss_pred CcccceeeccCcCCcCCEEECHHHHHHHHHHHhcCCCCceEEEEEECC---CC-CceEEEeee--cCCCCCCCEEEEeCC
Confidence 345666666654432 1444444555444445434566665441 33 456664432 221 11111 11122
Q ss_pred hHHHHHHHHHhhhhceEEEeeecCC
Q 033664 84 SHVEFSATFSAAIEKIVLLDFPTVL 108 (114)
Q Consensus 84 ~H~~~~~~~~p~~~~~~v~D~~~~~ 108 (114)
...-+-....+++++ ..+||....
T Consensus 75 ~~v~Id~~s~~~L~g-~~IDy~~~~ 98 (122)
T PRK09504 75 AKLFVPLQAMPFIDG-TEVDYVREG 98 (122)
T ss_pred EEEEEcHHHHHhhCC-cEEEeecCC
Confidence 222222356777877 799998764
No 36
>PF14114 DUF4286: Domain of unknown function (DUF4286)
Probab=45.11 E-value=76 Score=19.87 Aligned_cols=41 Identities=12% Similarity=0.088 Sum_probs=29.7
Q ss_pred CCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcC
Q 033664 40 IDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASH 82 (114)
Q Consensus 40 iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~h 82 (114)
.++..+..+-+-. +.+ ..+|-++++--.++|.++|+.|...
T Consensus 31 ~~~f~~~~~~kvl-~~~-~~~g~tysvQy~~~s~e~l~~y~~~ 71 (98)
T PF14114_consen 31 TGKFSKARICKVL-SEE-EEGGKTYSVQYEVESMEDLERYYEE 71 (98)
T ss_pred cCCCceeEEEEEe-ecC-CCCCeEEEEEEEECCHHHHHHHHHH
Confidence 3445555566555 221 2359999999999999999999886
No 37
>COG1828 PurS Phosphoribosylformylglycinamidine (FGAM) synthase, PurS component [Nucleotide transport and metabolism]
Probab=43.80 E-value=79 Score=19.64 Aligned_cols=40 Identities=30% Similarity=0.413 Sum_probs=31.3
Q ss_pred cEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 11 EFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 11 mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
|+.=.|..++|+++- .+.+..+|..|- ..+|.++++|+-.
T Consensus 1 ~~~v~V~V~lK~~VlDPqG~ti~~aL~~lg--~~~V~~vR~gK~~ 43 (83)
T COG1828 1 MYKVRVYVTLKPGVLDPEGETIEKALHRLG--YNEVSDVRVGKVI 43 (83)
T ss_pred CeEEEEEEEeCCcccCchhHHHHHHHHHcC--CcccceeeeeeEE
Confidence 344567778999986 678889999884 6789999999866
No 38
>PHA03169 hypothetical protein; Provisional
Probab=39.27 E-value=86 Score=25.02 Aligned_cols=60 Identities=7% Similarity=-0.061 Sum_probs=36.1
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHh
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKED 75 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~a 75 (114)
...-+|+|+||- +. ..+...-++| ++|||++-.+-. +....+....|.|++++.-.|...
T Consensus 319 p~~W~~~v~fWg-dP---~~LyrLsraL--qfpG~~ssgvq~-lP~~p~~p~~~~y~ItVyCqsk~T 378 (413)
T PHA03169 319 PGPWCWVVFCWG-DP---YSLYRLSRCL--QFPGAVSSGVQT-FPDAPGSPVIWAYCITVFCQSRGT 378 (413)
T ss_pred CCceeEEEEecC-Cc---HHHHHHHHHh--ccCCeeccceee-cCCCCCCCCCceeEEEEEecCccc
Confidence 456789999998 32 4455555665 499996533322 111122346788888887776553
No 39
>PF07978 NIPSNAP: NIPSNAP ; InterPro: IPR012577 Members of this family include many hypothetical proteins. It also includes members of the NIPSNAP family, which have putative roles in vesicular transport []. This domain is often found in duplicate.; PDB: 1VQY_D 2AP6_H.
Probab=37.80 E-value=93 Score=18.77 Aligned_cols=75 Identities=11% Similarity=0.017 Sum_probs=39.0
Q ss_pred EEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh----cChhHHH
Q 033664 15 LVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA----SHPSHVE 87 (114)
Q Consensus 15 iVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~----~hP~H~~ 87 (114)
+-.|++||+.- .+.+.+.+..+..+. |+.-+-++.... + ..-.+..+..|+|.++++++. .+|+.++
T Consensus 3 lr~Y~l~pg~~~~~~~~~~~~~~~~~~~~-g~~lvG~~~~~~---G--~~~~~~~l~~y~~~~~r~~~~~a~~~d~~w~~ 76 (102)
T PF07978_consen 3 LRTYTLKPGKMDEFLELFEEALIPRQKKH-GGKLVGYWVTEV---G--PLNQVVHLWSYDDLAAREEAREALYADPEWKA 76 (102)
T ss_dssp EEEEEESTT-HHHHHHHHHHCCHHHHHHH-H-EEEEEEEEEE---S--BSSEEEEEEEES-HHHHHHHHHHHHH-HHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHh-CCceeEEEEecc---C--CCceEEEEEEcCCHHHHHHHHHHHHcCchHHH
Confidence 45688888855 233333333332222 333333333221 1 134788888999999988754 4777766
Q ss_pred HHHHHHhh
Q 033664 88 FSATFSAA 95 (114)
Q Consensus 88 ~~~~~~p~ 95 (114)
......+.
T Consensus 77 ~~~~~~~~ 84 (102)
T PF07978_consen 77 YVAEARPL 84 (102)
T ss_dssp HHHHCCTT
T ss_pred HHHhcccc
Confidence 66554443
No 40
>PHA02697 hypothetical protein; Provisional
Probab=37.16 E-value=78 Score=23.40 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=28.6
Q ss_pred CCcEEEEEEEEecCCCC-HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 9 MGEFKHLVIVKFKEGVV-VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~-~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
+.-|.|+||||.|.=.. ++++.+.+.. ..++...+.+-++.
T Consensus 73 ~~~I~hVVFFqakQv~isVeeLY~~~~e---nl~~~~~LYFVrD~ 114 (255)
T PHA02697 73 SHDVRHVVLFKASVVDWRVEELFLGFGE---KLGGLDALYFVADG 114 (255)
T ss_pred cCCcCEEEEEEeeeeceeHHHHHHHHHh---cCCCceEEEEEecc
Confidence 35689999999976544 7777766663 46666666666655
No 41
>PHA02087 hypothetical protein
Probab=36.43 E-value=64 Score=19.44 Aligned_cols=30 Identities=20% Similarity=0.147 Sum_probs=22.1
Q ss_pred EEEEEECCHHhHHHhhcChhHHHHHHHHHh
Q 033664 65 AFLMTFNKKEDYTTFASHPSHVEFSATFSA 94 (114)
Q Consensus 65 ~l~~~F~s~~al~~Y~~hP~H~~~~~~~~p 94 (114)
...+.|.|.+.+++|..+.-+-+--.+.+|
T Consensus 3 i~rvkfks~ehrk~fa~s~~yn~~f~k~mp 32 (83)
T PHA02087 3 IVRVKFKSPEHRKAFAESEWYNEEFEKFMP 32 (83)
T ss_pred eEEEEcCCHHHHHHHHhhhHHHHHHHhhCc
Confidence 356899999999999998666554444443
No 42
>PF04673 Cyclase_polyket: Polyketide synthesis cyclase; InterPro: IPR006765 Aromatic polyketides are assembled by a type II (iterative) polyketide synthase in bacteria. Iterative type II polyketide synthases produce polyketide chains of variable but defined length from a specific starter unit and a number of extender units. They also specify the initial regiospecific folding and cyclization pattern of nascent polyketides either through the action of a cyclase (CYC) subunit or through the combined action of site-specific ketoreductase and CYC subunits. Additional CYCs and other modifications may be necessary to produce linear aromatic polyketides. This family represents a number of cyclases involved in polyketide synthesis in a number of actinobacterial species. TcmI (P39890 from SWISSPROT) catalyses an aromatic rearrangement in the biosynthetic pathaway of tetracenomycin C from Streptomyces coelicolor. The protein is a homodimer where each subunit forms a beta-alpha-beta fold belonging to the ferrodoxin fold superfamily []. Four strands of antiparallel sheets and a layer of alpha helices create a cavity which was proposed to be the active site. This structure shows strong topological similarity to a polyketide monoxygenase (Q53908 from SWISSPROT) from S. coelicolor which functions in the actinorhodin biosynthesic pathway []. It was suggested, therefore, that this fold is well suited to serve as a framework for rearrangements and chemical modification of polyaromatic substrates.; GO: 0030639 polyketide biosynthetic process; PDB: 1TUW_A.
Probab=35.44 E-value=39 Score=21.62 Aligned_cols=56 Identities=16% Similarity=0.211 Sum_probs=35.4
Q ss_pred hcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHHHHHhhhh
Q 033664 38 SEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIE 97 (114)
Q Consensus 38 ~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~~~p~~~ 97 (114)
+.+|++.+++ ++.+-+ -.+=|-|.+..+=+..+++.....||.-+++.+.|.|++.
T Consensus 19 teLP~~~Gv~-rR~Lf~---~~dLY~HLiE~~~d~~~~i~~ar~~P~F~~is~~L~~yi~ 74 (97)
T PF04673_consen 19 TELPHLMGVR-RRSLFS---FHDLYFHLIEADDDPGEAIAKARGHPEFVRISERLSPYIS 74 (97)
T ss_dssp SSHHHHHT---EEEEEE---ETTEEEEEEEESS--HHHHHHTTS-GGGHHHHHHHHTTEE
T ss_pred ccCchhhCcc-ceeEee---eCCEEEEEEeccCCchHHHHHHhcCcHHHHHHHHHHhhCC
Confidence 3567665553 232312 1244677777665666778899999999999999999875
No 43
>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function. The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.
Probab=32.80 E-value=1e+02 Score=17.68 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=18.2
Q ss_pred EEEEecCCCC----HHHHHHHHHHchhcCCcEeEEEe
Q 033664 16 VIVKFKEGVV----VEDIVKGMKKLVSEIDAVKSFEW 48 (114)
Q Consensus 16 Vlfk~k~~~~----~~~~~~~l~~L~~~iP~v~~~~~ 48 (114)
|.+++.-+.+ .+.+.+.+..-...+||+.++++
T Consensus 36 V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V 72 (72)
T PF01883_consen 36 VSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV 72 (72)
T ss_dssp EEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence 3455555543 46666665555457899888764
No 44
>PF11695 DUF3291: Domain of unknown function (DUF3291); InterPro: IPR021708 This bacterial family of proteins has no known function.
Probab=32.57 E-value=1.6e+02 Score=19.97 Aligned_cols=79 Identities=13% Similarity=0.077 Sum_probs=51.2
Q ss_pred EecCCCC---HHHHHH---HHHHchhcCCcEeEEEeecccCChhh--hcCcccEEEEEEECCHHhHHHhhcChhHHHHHH
Q 033664 19 KFKEGVV---VEDIVK---GMKKLVSEIDAVKSFEWGQDVEGQEM--LRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSA 90 (114)
Q Consensus 19 k~k~~~~---~~~~~~---~l~~L~~~iP~v~~~~~G~~~~s~~~--~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~ 90 (114)
+++.+.+ ...+.+ .+.+|.++.||.+--..+......+. ...+-.+.-++.-+|.++|.+|.-.-.|.++.+
T Consensus 8 ~~~ap~ddP~~~~F~~~l~~vn~~a~~spGFvwr~~~~~~~~t~~~~~~d~~~~~nlSvWes~eaL~~Fvy~~~H~~~l~ 87 (140)
T PF11695_consen 8 RLKAPLDDPRMADFVDNLDRVNALAERSPGFVWRLQDEGGDATSLRPFDDPRVIVNLSVWESVEALRAFVYRGPHREALR 87 (140)
T ss_pred eeeCCCCCchHHHHHHccHHHHHHHHhCCCcEEEeccCCCCcceeccCCCCceEEEEeeeCCHHHHHHHHhcChHHHHHH
Confidence 3444444 566664 56677888999775444432211111 122335778899999999999998877999998
Q ss_pred HHHhhhh
Q 033664 91 TFSAAIE 97 (114)
Q Consensus 91 ~~~p~~~ 97 (114)
+.+.-++
T Consensus 88 rrreWF~ 94 (140)
T PF11695_consen 88 RRREWFE 94 (140)
T ss_pred HHHHHhh
Confidence 7666543
No 45
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=32.50 E-value=61 Score=20.05 Aligned_cols=20 Identities=5% Similarity=0.099 Sum_probs=16.7
Q ss_pred CcccEEEEEEECCHHhHHHh
Q 033664 60 QGFTHAFLMTFNKKEDYTTF 79 (114)
Q Consensus 60 ~~~~~~l~~~F~s~~al~~Y 79 (114)
+.||++.+.+++|.++..+.
T Consensus 44 G~yD~v~i~eaPD~~~a~~~ 63 (91)
T PF08734_consen 44 GEYDFVVIVEAPDDETAAAA 63 (91)
T ss_pred CCCCEEEEEEcCCHHHHHHH
Confidence 56999999999999876543
No 46
>KOG2986 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.53 E-value=1.2e+02 Score=23.35 Aligned_cols=71 Identities=14% Similarity=0.165 Sum_probs=41.9
Q ss_pred HHHHHHHHHHchhcCCcEeEEEee--cccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHHHHHhhh
Q 033664 26 VEDIVKGMKKLVSEIDAVKSFEWG--QDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAI 96 (114)
Q Consensus 26 ~~~~~~~l~~L~~~iP~v~~~~~G--~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~~~p~~ 96 (114)
.+++...+.-|++.+...-.+-.| ++..+.+...+--|+++.++-+..=.-..-+.+|.|-.+.+.+.|-.
T Consensus 10 ~~~~~~~ls~lp~pv~~af~YGSgv~~Qag~s~~~~~MvDfI~~v~dpv~wHs~NlkqNp~HYS~lk~~Gpk~ 82 (313)
T KOG2986|consen 10 KDEYRKKLSVLPAPVDFAFGYGSGVFRQAGSSQKSNKMVDFILGVTDPVKWHSINLKQNPQHYSFLKLFGPKF 82 (313)
T ss_pred HHHHHHHHhcCCCceeEEEEeccchhhccccccccCcceeEEEecCchHHHHHhhhhcChHHHHHHHHhChHH
Confidence 455555555555433322222222 22212233456678887777666666677899999999998776653
No 47
>KOG2316 consensus Predicted ATPase (PP-loop superfamily) [General function prediction only]
Probab=29.33 E-value=48 Score=24.74 Aligned_cols=27 Identities=26% Similarity=0.355 Sum_probs=24.8
Q ss_pred HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 26 VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 26 ~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
++++.+.+...+.+||.+..+++|.-+
T Consensus 91 vEDLy~ll~~VK~~~p~~eaVS~GAIl 117 (277)
T KOG2316|consen 91 VEDLYELLKTVKEKIPDVEAVSVGAIL 117 (277)
T ss_pred HHHHHHHHHHHHhhCCCceeeehhhhH
Confidence 788889999999999999999999877
No 48
>COG3696 Putative silver efflux pump [Inorganic ion transport and metabolism]
Probab=29.11 E-value=1.2e+02 Score=27.27 Aligned_cols=50 Identities=22% Similarity=0.294 Sum_probs=35.6
Q ss_pred EEEEEecCCCC----HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEE
Q 033664 15 LVIVKFKEGVV----VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFL 67 (114)
Q Consensus 15 iVlfk~k~~~~----~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~ 67 (114)
.|..=|+++++ ++.+.+.|.+.+.++|.=.+-..|++.+ +.+.=|.+.+.
T Consensus 92 ~VtViF~dgtDiY~ARq~V~ErL~~v~~~LP~g~~p~lgP~sT---glG~i~~ytl~ 145 (1027)
T COG3696 92 LVTVIFKDGTDLYWARQRVLERLSQVQSQLPEGVEPELGPDST---GLGWIYQYTLV 145 (1027)
T ss_pred EEEEEEeCCchHHHHHHHHHHHHHHHHHhCCCCCCCCcCCCcc---CcceeEEEEEE
Confidence 35556788888 6888899999988899666688888773 33344555554
No 49
>PF02526 GBP_repeat: Glycophorin-binding protein; InterPro: IPR003681 The glycophorin-binding protein contains a tandem repeat. The repeated sequence determines the binding domain for an erythrocyte receptor binding protein of Plasmodium falciparum, the malarial parasite []. Erythrocyte invasion by the malarial merozoite is a receptor-mediated process, an obligatory step in the development of the parasite. The P. falciparum protein binds to the erythrocyte receptor glycophorin.
Probab=26.31 E-value=1.1e+02 Score=15.86 Aligned_cols=22 Identities=9% Similarity=0.135 Sum_probs=16.3
Q ss_pred HhHHHhhcChhHHHHHHHHHhh
Q 033664 74 EDYTTFASHPSHVEFSATFSAA 95 (114)
Q Consensus 74 ~al~~Y~~hP~H~~~~~~~~p~ 95 (114)
+-+++|..+|+++.-.+.+-.+
T Consensus 8 qimk~yaadpeyrkh~~v~yqi 29 (38)
T PF02526_consen 8 QIMKAYAADPEYRKHLNVLYQI 29 (38)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 4578999999988877754333
No 50
>PF14270 DUF4358: Domain of unknown function (DUF4358)
Probab=25.98 E-value=1.2e+02 Score=18.98 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=16.6
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHH
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGM 33 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l 33 (114)
.-..=|.+||.+++.+.+.+.+.+
T Consensus 43 ~~~~ei~v~k~kd~~~~e~Vk~~l 66 (106)
T PF14270_consen 43 MSADEIAVFKAKDGKQAEDVKKAL 66 (106)
T ss_pred CCccEEEEEEECCcCcHHHHHHHH
Confidence 445678999999999744444433
No 51
>PF03927 NapD: NapD protein; InterPro: IPR005623 This entry represents NapD, the twin-arginine signal-peptide-binding chaperone for NapA, functioning as an assembly protein for the periplasmic nitrate reductase NapABC. The periplasmic NapABC enzyme likely functions during growth in nitrate-limited environments [].; PDB: 2JSX_A 2PQ4_A.
Probab=25.59 E-value=85 Score=18.92 Aligned_cols=25 Identities=16% Similarity=0.085 Sum_probs=19.0
Q ss_pred CCCHHHHHHHHHHchhcCCcEeEEEe
Q 033664 23 GVVVEDIVKGMKKLVSEIDAVKSFEW 48 (114)
Q Consensus 23 ~~~~~~~~~~l~~L~~~iP~v~~~~~ 48 (114)
..+..++.+.+.++. .+|||.+...
T Consensus 47 ~~~~~~~~~~~~~i~-~l~GVlsa~l 71 (79)
T PF03927_consen 47 AESSEEEVDLIDAIN-ALPGVLSASL 71 (79)
T ss_dssp ESSHHHHHHHHHHHC-CSTTEEEEEE
T ss_pred eCChHHHHHHHHHHH-cCCCceEEEE
Confidence 334678888888886 5999998754
No 52
>PRK12866 YciI-like protein; Reviewed
Probab=25.49 E-value=1.8e+02 Score=18.18 Aligned_cols=63 Identities=10% Similarity=0.015 Sum_probs=36.4
Q ss_pred EEEEEecCCCC--HHHHH----HHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcC-hhHH
Q 033664 15 LVIVKFKEGVV--VEDIV----KGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASH-PSHV 86 (114)
Q Consensus 15 iVlfk~k~~~~--~~~~~----~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~h-P~H~ 86 (114)
+|.+..+++.. +.+.. +-|..+.. .|+ -+..|+-. ++ .. --.++++++|.++.+++..+ |-++
T Consensus 4 ~v~~~~~~~~~~~r~~~r~~H~~~L~~~~~--~G~-ll~aGp~~-~~--~~---G~~ii~~a~s~~e~~~~l~~DPf~~ 73 (97)
T PRK12866 4 LLTYDLVDDYLERREAYRAEHLALAQAATE--RGE-LLLAGALA-DP--AD---GAVLVFEGDSPAAAEAFARADPYVR 73 (97)
T ss_pred EEEEEecCChHHHHHHHHHHHHHHHHHHHh--CCE-EEEeCCCC-CC--CC---cEEEEEEeCCHHHHHHHHHcCChhh
Confidence 56667777754 33333 33444433 255 44567644 21 11 24566799999999997765 6554
No 53
>COG0199 RpsN Ribosomal protein S14 [Translation, ribosomal structure and biogenesis]
Probab=24.48 E-value=38 Score=19.81 Aligned_cols=12 Identities=42% Similarity=0.692 Sum_probs=9.4
Q ss_pred hhcCCcEeEEEe
Q 033664 37 VSEIDAVKSFEW 48 (114)
Q Consensus 37 ~~~iP~v~~~~~ 48 (114)
.++|||++..+|
T Consensus 50 ~g~ipGv~K~sW 61 (61)
T COG0199 50 KGEIPGVKKASW 61 (61)
T ss_pred ccCCCCeEeccC
Confidence 567999987765
No 54
>PF14330 DUF4387: Domain of unknown function (DUF4387)
Probab=23.98 E-value=1.2e+02 Score=19.51 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=27.0
Q ss_pred hhcCcccEEEEEEECCHHhHHHhhcChh-HHHHHHH
Q 033664 57 MLRQGFTHAFLMTFNKKEDYTTFASHPS-HVEFSAT 91 (114)
Q Consensus 57 ~~~~~~~~~l~~~F~s~~al~~Y~~hP~-H~~~~~~ 91 (114)
.+++.|-.-+-+-|+|.+.++.+..++. -.+.+..
T Consensus 11 KNAGPf~lT~DI~F~~~e~Y~~vk~s~~l~~~~ia~ 46 (99)
T PF14330_consen 11 KNAGPFELTFDIIFKDKEAYERVKASGVLTPELIAR 46 (99)
T ss_pred cCCCCcEEEEEEEECCHHHHHHHHHcCccCHHHHHH
Confidence 4568899999999999999999998843 3334443
No 55
>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function.; PDB: 3BPD_I 2RAQ_F 2X3D_E.
Probab=23.21 E-value=1.7e+02 Score=18.63 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=25.8
Q ss_pred CCcEEEEEEEEecCCCC-HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 9 MGEFKHLVIVKFKEGVV-VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~-~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
|..++++||=-+||.-+ +-++.. +|. +++|+..+.+.-..
T Consensus 1 M~~irRlVLDVlKP~~p~i~e~A~---~l~-~~~gV~gVnitv~E 41 (95)
T PF02680_consen 1 MAGIRRLVLDVLKPHEPSIVELAK---ALS-ELEGVDGVNITVVE 41 (95)
T ss_dssp --SEEEEEEEEEEESSS-HHHHHH---HHH-TSTTEEEEEEEEEE
T ss_pred CCceeEEEEEeecCCCCCHHHHHH---HHH-hCCCcceEEEEEEE
Confidence 56799999999998433 444444 443 47788888776544
No 56
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=23.11 E-value=77 Score=20.77 Aligned_cols=18 Identities=6% Similarity=0.366 Sum_probs=15.8
Q ss_pred EEEEEEECCHHhHHHhhc
Q 033664 64 HAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 64 ~~l~~~F~s~~al~~Y~~ 81 (114)
+.|+..|+|.++++.|..
T Consensus 3 siWiG~f~s~~el~~Y~e 20 (122)
T PF14112_consen 3 SIWIGNFKSEDELEEYFE 20 (122)
T ss_pred EEEEecCCCHHHHHHHhC
Confidence 468889999999999984
No 57
>PF14218 COP23: Circadian oscillating protein COP23
Probab=22.92 E-value=1.3e+02 Score=19.96 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=16.9
Q ss_pred EEEEEecCCCCHHHHHHHHHHch
Q 033664 15 LVIVKFKEGVVVEDIVKGMKKLV 37 (114)
Q Consensus 15 iVlfk~k~~~~~~~~~~~l~~L~ 37 (114)
=|||.||++.+..++.+.|....
T Consensus 86 ~vLfTL~p~~~p~~~l~~l~~~~ 108 (132)
T PF14218_consen 86 NVLFTLKPGNNPNQVLQQLFDIL 108 (132)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999666666555543
No 58
>PF14581 SseB_C: SseB protein C-terminal domain
Probab=22.86 E-value=1.6e+02 Score=18.31 Aligned_cols=69 Identities=12% Similarity=0.085 Sum_probs=45.3
Q ss_pred HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHHHHHhhhhceEEEee
Q 033664 26 VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEKIVLLDF 104 (114)
Q Consensus 26 ~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~~~p~~~~~~v~D~ 104 (114)
..++.+.|..+-.+.+.|.+.....-. ..++...+.++++|+. ++.+.. -.++.....++..+-.-+|+
T Consensus 17 p~~l~~aL~~~~~~~~~V~~Ayl~~~~----~~~~~~~~li~vd~~~-~~~~~~-----~~~i~~~~~~~~~~~~~vd~ 85 (108)
T PF14581_consen 17 PTDLLAALSEYFKQHKNVRAAYLALMQ----DEDEQPSLLIGVDFDG-EDIEEI-----FQEIGRAARPYLPDGWPVDF 85 (108)
T ss_pred HHHHHHHHHHHHhhCccHHHhHHHHhh----ccCCCceEEEEEeccC-hhHHHH-----HHHHHHHhhhcCCCCceEEE
Confidence 788899999888888888887666544 1357788999999998 433332 23344445665554344444
No 59
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=22.61 E-value=1.5e+02 Score=23.30 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=36.1
Q ss_pred EEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhc
Q 033664 17 IVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 17 lfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
=|||+++ .|++|=++.--|+++++-.|.. -++||-+ ++|++.+|-++-+.
T Consensus 105 PFrFRdp--------DL~aMF~kfG~VldVEIIfNER----GSKGFGF---VTmen~~dadRARa 154 (376)
T KOG0125|consen 105 PFRFRDP--------DLRAMFEKFGKVLDVEIIFNER----GSKGFGF---VTMENPADADRARA 154 (376)
T ss_pred CccccCc--------cHHHHHHhhCceeeEEEEeccC----CCCccce---EEecChhhHHHHHH
Confidence 4666655 4666666777799999999883 3688876 48899888776543
No 60
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=22.46 E-value=1.2e+02 Score=17.60 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=16.9
Q ss_pred HHHHHHHHHHchhcCCcEeEEE
Q 033664 26 VEDIVKGMKKLVSEIDAVKSFE 47 (114)
Q Consensus 26 ~~~~~~~l~~L~~~iP~v~~~~ 47 (114)
.+++...+..|+ ++|||.++.
T Consensus 59 ~~~L~~ii~~L~-~i~~V~~V~ 79 (80)
T PF13291_consen 59 LEHLNQIIRKLR-QIPGVISVE 79 (80)
T ss_dssp HHHHHHHHHHHC-TSTTEEEEE
T ss_pred HHHHHHHHHHHH-CCCCeeEEE
Confidence 678888888886 599998864
No 61
>PRK11370 YciI-like protein; Reviewed
Probab=21.99 E-value=2.1e+02 Score=17.70 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=16.8
Q ss_pred EEEEEECCHHhHHHhhcC-hhHH
Q 033664 65 AFLMTFNKKEDYTTFASH-PSHV 86 (114)
Q Consensus 65 ~l~~~F~s~~al~~Y~~h-P~H~ 86 (114)
+++++|+|.++.+++.++ |.++
T Consensus 60 ~ii~ea~s~~~a~~~~~~DPy~~ 82 (99)
T PRK11370 60 TVIAEFESLEAAQAWADADPYVA 82 (99)
T ss_pred EEEEEECCHHHHHHHHHCCchhh
Confidence 677799999999996665 5444
No 62
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.19 E-value=1.8e+02 Score=16.80 Aligned_cols=66 Identities=12% Similarity=0.183 Sum_probs=34.3
Q ss_pred EEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHHHHHhh
Q 033664 16 VIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATFSAA 95 (114)
Q Consensus 16 Vlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~~~p~ 95 (114)
++|.+++. .-.+.+.|..++..-=-+..+ . |++.+...|.+.|.++|+- . .+.-+++.+.++..
T Consensus 3 l~f~l~~~--pG~L~~vL~~f~~~~iNlt~I-----e-SRP~~~~~~~y~Ffvd~~~-~-------~~~~~~~l~~L~~~ 66 (74)
T cd04904 3 LIFSLKEE--VGALARALKLFEEFGVNLTHI-----E-SRPSRRNGSEYEFFVDCEV-D-------RGDLDQLISSLRRV 66 (74)
T ss_pred EEEEeCCC--CcHHHHHHHHHHHCCCcEEEE-----E-CCCCCCCCceEEEEEEEEc-C-------hHHHHHHHHHHHHh
Confidence 56777653 233555555554311112333 2 3334557789999999985 1 12234455555555
Q ss_pred hh
Q 033664 96 IE 97 (114)
Q Consensus 96 ~~ 97 (114)
+.
T Consensus 67 ~~ 68 (74)
T cd04904 67 VA 68 (74)
T ss_pred cC
Confidence 44
No 63
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=20.20 E-value=23 Score=21.13 Aligned_cols=31 Identities=13% Similarity=0.174 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHchhcCCcEeEEEeecccCChh
Q 033664 25 VVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQE 56 (114)
Q Consensus 25 ~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~ 56 (114)
|.++++++++.|.+--|.|......+++ +|+
T Consensus 4 s~eqv~~aFr~lA~~KpyVT~~dLr~~l-~pe 34 (69)
T PF08726_consen 4 SAEQVEEAFRALAGGKPYVTEEDLRRSL-TPE 34 (69)
T ss_dssp TCHHHHHHHHHHCTSSSCEEHHHHHHHS--CC
T ss_pred CHHHHHHHHHHHHcCCCcccHHHHHHHc-CcH
Confidence 4688999999998888999888777776 443
No 64
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.04 E-value=2.2e+02 Score=17.57 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=29.3
Q ss_pred EEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECC
Q 033664 13 KHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNK 72 (114)
Q Consensus 13 ~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s 72 (114)
+--++|.+++. .-.+.+.|..++..==-+..+. |++.+...|++.|+++|+-
T Consensus 14 ktslif~l~~~--pGsL~~vL~~Fa~~~INLt~Ie------SRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 14 VISLIFSLKEE--VGALAKVLRLFEEKDINLTHIE------SRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred cEEEEEEcCCC--CcHHHHHHHHHHHCCCCEEEEE------eccCCCCCceEEEEEEEEc
Confidence 45677888664 3345556666654211233332 2223346688999998873
Done!