Query 033664
Match_columns 114
No_of_seqs 121 out of 989
Neff 7.8
Searched_HMMs 29240
Date Mon Mar 25 07:40:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033664.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033664hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1rjj_A Expressed protein; beta 100.0 3.2E-34 1.1E-38 187.0 13.1 105 8-112 2-106 (111)
2 1q4r_A Protein AT3G17210; cent 100.0 3.9E-34 1.3E-38 187.0 12.1 104 7-111 6-112 (112)
3 2qyc_A Ferredoxin-like protein 100.0 1.9E-33 6.5E-38 181.1 12.7 99 8-109 1-102 (103)
4 1tr0_A Stable protein 1; plant 100.0 3.6E-33 1.2E-37 181.1 12.9 99 7-106 4-107 (108)
5 3bb5_A Stress responsive alpha 100.0 4.5E-32 1.5E-36 179.6 12.2 99 7-106 16-121 (121)
6 3bn7_A Ferredoxin-like protein 100.0 6.1E-32 2.1E-36 178.8 12.7 98 7-106 16-119 (120)
7 3bgu_A Ferredoxin-like protein 100.0 1.7E-31 5.9E-36 175.6 11.8 98 6-106 16-116 (116)
8 3fmb_A Dimeric protein of unkn 100.0 7.2E-31 2.5E-35 173.2 11.3 95 8-106 17-118 (118)
9 3bde_A MLL5499 protein; stress 100.0 2.1E-30 7.3E-35 171.4 12.4 97 7-107 16-116 (120)
10 2ftr_A BH0200; structural geno 98.7 2E-07 6.9E-12 59.6 9.3 91 10-101 7-99 (108)
11 3hf5_A 4-methylmuconolactone m 98.6 1.1E-06 3.8E-11 57.1 10.8 94 9-102 8-110 (116)
12 1y0h_A Hypothetical protein RV 98.6 6E-07 2E-11 55.8 8.8 95 10-112 4-101 (102)
13 3kkf_A Putative antibiotic bio 98.5 3.1E-06 1.1E-10 53.3 11.8 97 8-111 2-102 (105)
14 2fb0_A Conserved hypothetical 98.5 4.5E-06 1.5E-10 51.1 12.0 86 8-100 1-89 (94)
15 3gz7_A Putative antibiotic bio 98.4 8.5E-06 2.9E-10 52.5 11.7 90 8-104 17-110 (115)
16 2pd1_A Hypothetical protein; u 98.4 9.2E-06 3.1E-10 50.6 11.4 81 9-98 3-86 (104)
17 2bbe_A Hypothetical protein SO 98.3 1.1E-05 3.8E-10 50.8 10.8 83 9-98 11-97 (108)
18 3e8o_A Uncharacterized protein 98.3 1.4E-05 4.9E-10 51.5 11.5 89 9-104 17-108 (119)
19 2gff_A LSRG protein; dimeric a 98.3 1.1E-05 3.7E-10 50.7 10.5 81 11-98 1-84 (106)
20 2jdj_A HAPK, REDY-like protein 98.3 2.6E-05 8.8E-10 49.7 11.5 83 12-97 2-88 (105)
21 3bm7_A Protein of unknown func 98.3 2.7E-05 9.3E-10 49.8 11.6 90 8-104 17-110 (115)
22 1iuj_A Hypothetical protein TT 98.3 5.3E-06 1.8E-10 51.7 7.8 90 11-107 1-98 (106)
23 1q8b_A Protein YJCS; structura 98.3 1.5E-05 5E-10 50.2 9.8 87 9-101 11-100 (105)
24 4dpo_A Conserved protein; stru 98.3 1.5E-05 5E-10 51.5 10.1 84 9-99 23-109 (119)
25 1x7v_A PA3566 protein, APC5058 98.2 2.8E-05 9.6E-10 47.8 10.8 85 10-101 5-92 (99)
26 3kg0_A Snoab; polyketide, anth 98.2 3E-05 1E-09 50.9 11.4 81 9-97 21-104 (128)
27 4dn9_A Antibiotic biosynthesis 98.2 5E-05 1.7E-09 49.3 12.1 90 9-105 21-111 (122)
28 2omo_A DUF176; structural geno 98.2 3.2E-05 1.1E-09 50.2 10.7 83 10-99 22-107 (124)
29 3bf4_A Ethyl TERT-butyl ether 98.1 1.4E-05 4.7E-10 52.7 8.1 93 8-101 17-114 (127)
30 1tuv_A Protein YGIN; menadione 98.0 0.00012 4.3E-09 46.6 11.0 89 11-99 1-95 (114)
31 4hl9_A Antibiotic biosynthesis 98.0 7.8E-05 2.7E-09 48.2 9.6 96 5-107 17-115 (118)
32 2zdo_A Heme-degrading monooxyg 97.9 4.1E-05 1.4E-09 48.3 7.1 79 9-92 2-82 (109)
33 3f44_A Putative monooxygenase; 97.8 0.00033 1.1E-08 49.7 10.1 94 7-107 112-209 (220)
34 1tz0_A Hypothetical protein; s 97.7 5.2E-05 1.8E-09 48.6 4.6 96 8-108 3-106 (114)
35 1sqe_A Hypothetical protein PG 97.5 0.00025 8.5E-09 44.5 6.3 77 11-92 2-80 (109)
36 3hx9_A Protein RV3592; DI-heme 97.5 0.00029 1E-08 45.9 6.4 91 10-107 1-95 (124)
37 2ril_A Antibiotic biosynthesis 97.4 0.0013 4.5E-08 40.5 8.2 68 10-82 4-74 (99)
38 3tvz_A Putative uncharacterize 97.3 0.00076 2.6E-08 46.2 6.4 77 9-93 69-148 (172)
39 2go8_A Hypothetical protein YQ 97.2 0.001 3.5E-08 43.4 6.4 79 9-97 11-93 (122)
40 3fgv_A Uncharacterized protein 97.1 0.0023 7.8E-08 40.6 7.3 80 16-104 17-102 (106)
41 3lo3_A Uncharacterized conserv 97.1 0.0042 1.4E-07 38.4 8.3 89 11-102 4-93 (94)
42 3fj2_A Monooxygenase-like prot 96.8 0.02 6.7E-07 39.8 10.5 77 11-95 85-164 (186)
43 2fiu_A Conserved hypothetical 96.8 0.016 5.5E-07 36.1 9.0 88 12-102 6-94 (99)
44 3f44_A Putative monooxygenase; 96.7 0.031 1.1E-06 39.4 10.8 92 9-107 4-99 (220)
45 1lq9_A Actva-ORF6 monooxygenas 96.6 0.013 4.3E-07 37.3 7.5 83 12-102 10-101 (112)
46 3hhl_A RPA0582; alpha-beta-bar 96.5 0.08 2.7E-06 35.1 11.3 87 10-97 23-122 (143)
47 3mcs_A Putative monooxygenase; 96.5 0.06 2.1E-06 38.0 11.1 92 9-107 111-205 (219)
48 3mcs_A Putative monooxygenase; 96.1 0.097 3.3E-06 37.0 10.6 90 10-106 5-99 (219)
49 4ae5_A Signal transduction pro 93.6 0.94 3.2E-05 30.7 9.4 69 12-88 67-138 (167)
50 2cvi_A 75AA long hypothetical 89.5 2 6.8E-05 24.9 8.4 57 11-81 1-57 (83)
51 2djw_A Probable transcriptiona 89.3 2.2 7.4E-05 25.2 7.0 57 11-81 1-57 (92)
52 1vq3_A Phosphoribosylformylgly 88.1 2.2 7.5E-05 26.2 6.3 42 9-52 13-57 (94)
53 2zbc_A 83AA long hypothetical 85.0 3.7 0.00013 23.4 7.1 56 11-80 1-56 (83)
54 1gtd_A MTH169; synthetase, FGA 81.9 4.9 0.00017 23.9 5.7 40 10-52 1-43 (85)
55 2dgb_A Hypothetical protein PU 81.4 4.6 0.00016 23.9 5.4 41 9-52 1-44 (84)
56 2zw2_A Putative uncharacterize 80.2 5.8 0.0002 24.0 5.7 40 11-52 5-47 (92)
57 3i4p_A Transcriptional regulat 78.1 12 0.0004 24.4 7.9 57 12-81 63-121 (162)
58 2cg4_A Regulatory protein ASNC 76.4 12 0.00042 23.8 6.9 56 12-80 68-123 (152)
59 1t4a_A PURS; tetramer, complex 71.3 13 0.00045 21.9 6.3 40 11-52 1-43 (84)
60 1tuw_A Tetracenomycin polyketi 68.9 2.6 9E-05 26.6 1.9 81 11-97 2-84 (109)
61 2p5v_A Transcriptional regulat 66.4 23 0.00079 22.7 8.3 56 12-80 70-126 (162)
62 2cyy_A Putative HTH-type trans 62.9 26 0.00089 22.2 6.7 55 12-80 67-121 (151)
63 2cb2_A Sulfur oxygenase reduct 62.7 44 0.0015 24.6 8.9 78 19-97 167-285 (318)
64 2yx5_A UPF0062 protein MJ1593; 62.4 11 0.00037 22.2 3.8 40 11-52 1-43 (83)
65 2hiq_A Hypothetical protein YD 61.0 28 0.00097 21.9 8.2 66 10-83 8-76 (113)
66 2cfx_A HTH-type transcriptiona 58.4 31 0.0011 21.6 6.5 55 12-80 65-119 (144)
67 2asy_A Protein YDHR precursor; 54.7 39 0.0013 21.6 5.6 66 10-83 23-91 (123)
68 2e1c_A Putative HTH-type trans 52.6 46 0.0016 21.8 7.5 55 12-80 87-141 (171)
69 2ia0_A Putative HTH-type trans 50.5 50 0.0017 21.6 7.1 57 13-80 77-137 (171)
70 2pn6_A ST1022, 150AA long hypo 49.2 46 0.0016 20.8 7.2 42 26-80 78-119 (150)
71 1vqs_A Hypothetical protein AG 42.4 58 0.002 20.0 7.9 81 10-97 12-100 (116)
72 2lmi_A GRSF-1, G-rich sequence 40.6 41 0.0014 19.8 4.0 61 14-81 13-73 (107)
73 2lkz_A RNA-binding protein 5; 37.7 43 0.0015 19.6 3.7 68 1-78 1-68 (95)
74 2qlw_A RHAU; mutarotase, isome 31.7 1.1E+02 0.0037 20.0 5.9 80 8-97 38-125 (144)
75 2db1_A Heterogeneous nuclear r 31.3 58 0.002 19.6 3.6 60 15-81 20-79 (118)
76 1i1g_A Transcriptional regulat 30.0 97 0.0033 18.9 7.3 56 11-80 63-118 (141)
77 3gn6_A CT0912, orfan protein w 29.6 70 0.0024 23.4 4.1 85 10-98 38-147 (321)
78 2qmw_A PDT, prephenate dehydra 29.6 66 0.0023 23.1 4.1 72 15-100 188-261 (267)
79 2dbb_A Putative HTH-type trans 28.9 51 0.0017 20.6 3.2 40 31-80 84-124 (151)
80 2div_A TRNA selenocysteine ass 26.6 93 0.0032 17.6 5.2 61 10-79 7-68 (99)
81 2w25_A Probable transcriptiona 24.2 67 0.0023 20.1 3.1 54 13-80 68-122 (150)
82 2jsx_A Protein NAPD; TAT, proo 20.6 86 0.0029 18.7 2.8 26 25-51 52-77 (95)
83 2lnm_A Protein TIC 40, chlorop 20.2 1.2E+02 0.004 16.4 3.3 26 71-96 32-57 (62)
No 1
>1rjj_A Expressed protein; beta barrel, homodimer, structural genomics, protein structure initiative, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: d.58.4.4
Probab=100.00 E-value=3.2e-34 Score=187.04 Aligned_cols=105 Identities=63% Similarity=1.037 Sum_probs=97.6
Q ss_pred cCCcEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 8 AMGEFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 8 ~~~mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
+++||+||||||||+++.++++.+.+.+|+++||||+++++|+|..++++++++||++++++|+|.++|++|+.||+|++
T Consensus 2 ~~~Mi~HiVlfklk~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~~~~~~~~~~~~~~l~~~F~s~e~l~~Y~~hP~H~~ 81 (111)
T 1rjj_A 2 ATSGFKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVE 81 (111)
T ss_dssp CSSEEEEEEEEECSSCCCHHHHHHHHHHHHGGGGGSCEEEEEEECCSCTTTSTTCCEEEEEEESSHHHHHHHHTSHHHHH
T ss_pred CCCcEEEEEEEEECCcchHHHHHHHHHHHHhcCCceEEEEEcCCCCCccccCCCccEEEEEEECCHHHHHHHhCCHHHHH
Confidence 56799999999999999889999999999999999999999999734556789999999999999999999999999999
Q ss_pred HHHHHHhhhhceEEEeeecCCCCCC
Q 033664 88 FSATFSAAIEKIVLLDFPTVLGKAP 112 (114)
Q Consensus 88 ~~~~~~p~~~~~~v~D~~~~~~~~~ 112 (114)
+++.++|++++++++||+.+.+++|
T Consensus 82 ~~~~~~~~~~~~~v~D~~~~~~~~~ 106 (111)
T 1rjj_A 82 FSAAFTAVIDKIVLLDFPVAAVKSS 106 (111)
T ss_dssp HHHHHHHTCSEEEEEEEEECTTCCC
T ss_pred HHHHHHHHhcceEEEEeEcceeccC
Confidence 9999999999999999999987553
No 2
>1q4r_A Protein AT3G17210; center for eukaryotic structural genom structural genomics, protein structure initiative, CESG, UN function; 1.90A {Arabidopsis thaliana} SCOP: d.58.4.4 PDB: 1q53_A 2q3p_A
Probab=100.00 E-value=3.9e-34 Score=186.95 Aligned_cols=104 Identities=38% Similarity=0.772 Sum_probs=94.6
Q ss_pred ccCCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcCh
Q 033664 7 AAMGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHP 83 (114)
Q Consensus 7 ~~~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP 83 (114)
..++||+||||||||++++ ++++.+.+.+|+++||||+++++|+|. ++++++++||++++++|+|.+||++|+.||
T Consensus 6 ~~~~mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~-~~~~~~~~~d~~l~~~F~s~e~l~~Y~~hP 84 (112)
T 1q4r_A 6 EAKGPVKHVLLASFKDGVSPEKIEELIKGYANLVNLIEPMKAFHWGKDV-SIENLHQGYTHIFESTFESKEAVAEYIAHP 84 (112)
T ss_dssp ----CEEEEEEEEECTTCCHHHHHHHHHHHHTHHHHCTTCCEEEEEECC-CSSSCSTTCCEEEEEEESCHHHHHHHHHSH
T ss_pred CCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHhhhCCceEEEEEccCC-CccccCCCccEEEEEEECCHHHHHHHhCCH
Confidence 3467999999999999998 577889999999999999999999999 777788999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhceEEEeeecCCCCC
Q 033664 84 SHVEFSATFSAAIEKIVLLDFPTVLGKA 111 (114)
Q Consensus 84 ~H~~~~~~~~p~~~~~~v~D~~~~~~~~ 111 (114)
.|+++++.++|++++++++||+.+++++
T Consensus 85 ~H~~~~~~~~~~~~~~~v~D~~~~~~~~ 112 (112)
T 1q4r_A 85 AHVEFATIFLGSLDKVLVIDYKPTSVSL 112 (112)
T ss_dssp HHHHHHHHHHHTEEEEEEEEECCCCSCC
T ss_pred HHHHHHHHHHHHhcCcEEEeeecccccC
Confidence 9999999999999999999999998764
No 3
>2qyc_A Ferredoxin-like protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 1.90A {Bordetella bronchiseptica RB50}
Probab=100.00 E-value=1.9e-33 Score=181.08 Aligned_cols=99 Identities=23% Similarity=0.418 Sum_probs=92.6
Q ss_pred cCCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChh
Q 033664 8 AMGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPS 84 (114)
Q Consensus 8 ~~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~ 84 (114)
|++||+||||||||++++ ++++.+.+.+|+++||||+++++|+|. + .++++||++++++|+|.++|++|+.||.
T Consensus 1 ~~~Mi~HiVlfk~k~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~-~--~~~~~~~~~~~~~F~s~e~l~~Y~~hP~ 77 (103)
T 2qyc_A 1 GMTMFLHVVMMEFDDGIDAGFFRTVDEYVARMKRECDGLLLYHFGENV-A--ARSQGYTHATSSAFVDAAAHDAYQVCPA 77 (103)
T ss_dssp CCEEEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHSTTEEEEEEEECC-C--TTCTTCCEEEEEEESSHHHHHHHTTCHH
T ss_pred CCceEEEEEEEEECCCCCHHHHHHHHHHHHHhhhcCCCeEEEEECCCC-C--CCCCCccEEEEEEECCHHHHHHHhCCHH
Confidence 467999999999999998 678889999999999999999999999 5 5779999999999999999999999999
Q ss_pred HHHHHHHHHhhhhceEEEeeecCCC
Q 033664 85 HVEFSATFSAAIEKIVLLDFPTVLG 109 (114)
Q Consensus 85 H~~~~~~~~p~~~~~~v~D~~~~~~ 109 (114)
|+++.+.++|++++++++||+.+..
T Consensus 78 H~~~~~~~~~~~~~~~v~D~~~~~~ 102 (103)
T 2qyc_A 78 HVAMKAFMGPRIKRVVVYDGEVPAI 102 (103)
T ss_dssp HHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred HHHHHHHHHHHhcCcEEEEEecCCc
Confidence 9999889999999999999998754
No 4
>1tr0_A Stable protein 1; plant protein; 1.80A {Populus tremula} SCOP: d.58.4.4 PDB: 1si9_A
Probab=100.00 E-value=3.6e-33 Score=181.14 Aligned_cols=99 Identities=26% Similarity=0.568 Sum_probs=92.2
Q ss_pred ccCCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChh--hhcCcccEEEEEEECCHHhHHHhhc
Q 033664 7 AAMGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQE--MLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 7 ~~~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~--~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
+..+||+||||||||++++ ++++.+.|.+|+++||||+++++|+|. +++ ++++|||++++++|+|.++|++|+.
T Consensus 4 ~~~~mi~HiVlfklk~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~-~~~~~~~~~~~d~~l~~~F~s~e~l~~Y~~ 82 (108)
T 1tr0_A 4 RTPKLVKHTLLTRFKDEITREQIDNYINDYTNLLDLIPSMKSFNWGTDL-GMESAELNRGYTHAFESTFESKSGLQEYLD 82 (108)
T ss_dssp CCCCCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCTTCCEEEEEECC-SCSCTTTTTTCCEEEEEEESSHHHHHHHHT
T ss_pred CCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCC-CccccccCCCccEEEEEEECCHHHHHHHhC
Confidence 3345999999999999998 577889999999999999999999999 776 7889999999999999999999999
Q ss_pred ChhHHHHHHHHHhhhhceEEEeeec
Q 033664 82 HPSHVEFSATFSAAIEKIVLLDFPT 106 (114)
Q Consensus 82 hP~H~~~~~~~~p~~~~~~v~D~~~ 106 (114)
||.|+++++.++|++++++++||+.
T Consensus 83 hP~H~~~~~~~~~~~~~~~v~D~~~ 107 (108)
T 1tr0_A 83 SAALAAFAEGFLPTLSQRLVIDYFL 107 (108)
T ss_dssp CHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CHHHHHHHHHHHHHhCCcEEEEEEe
Confidence 9999999999999999999999985
No 5
>3bb5_A Stress responsive alpha-beta protein; dimeric ferredoxin-like protein, structural genomics, joint for structural genomics, JCSG; HET: CIT; 2.30A {Jannaschia SP}
Probab=99.98 E-value=4.5e-32 Score=179.62 Aligned_cols=99 Identities=21% Similarity=0.370 Sum_probs=91.5
Q ss_pred ccCCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcCh
Q 033664 7 AAMGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHP 83 (114)
Q Consensus 7 ~~~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP 83 (114)
..++||+||||||||++++ ++++.+.|.+|+++||||+++++|+|. ++++++++||++++++|+|.++|++|+.||
T Consensus 16 ~~~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~~~ip~i~~~~~G~~~-s~e~~~~g~~~~l~~~F~s~e~l~~Y~~hP 94 (121)
T 3bb5_A 16 YFQGMLYHLVMLEPEGEGAMDRIMEAMAILDGLAPELPGLTEFRHGPNR-DFEQKSERYPYGFLCTFTDKAALDAYAVHP 94 (121)
T ss_dssp ---CCEEEEEEECBCSTTHHHHHHHHHHHHHHHGGGCTTEEEEEEEEBC-CTTSSCTTCCEEEEEEESSHHHHHHHHHSH
T ss_pred cCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-CccccCCCeeEEEEEEECCHHHHHHHHcCH
Confidence 4578999999999999998 678889999999999999999999999 887788999999999999999999999999
Q ss_pred hHHHHHHHHHhhh----hceEEEeeec
Q 033664 84 SHVEFSATFSAAI----EKIVLLDFPT 106 (114)
Q Consensus 84 ~H~~~~~~~~p~~----~~~~v~D~~~ 106 (114)
+|+++.+.++|++ ++++++||+.
T Consensus 95 ~H~~~~~~~~p~~~gg~~~~~v~D~~~ 121 (121)
T 3bb5_A 95 THQRAGGMLVASCRNGADGILVVDLEV 121 (121)
T ss_dssp HHHHHHHHHHHTBTTGGGGEEEEEEEC
T ss_pred hHHHHHHHHHHHhCcCcCCEEEEeEEC
Confidence 9999999999999 9999999974
No 6
>3bn7_A Ferredoxin-like protein; stress responsive A/B barre structural genomics, joint center for structural genomics; HET: MSE; 1.64A {Caulobacter crescentus}
Probab=99.98 E-value=6.1e-32 Score=178.78 Aligned_cols=98 Identities=24% Similarity=0.352 Sum_probs=89.6
Q ss_pred ccCCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChh---hhcCcccEEEEEEECCHHhHHHhh
Q 033664 7 AAMGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQE---MLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 7 ~~~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~---~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
..++||+||||||||++++ ++++++.|.+|+ +||||+++++|+|. +++ ++++|||++++++|+|.++|++|+
T Consensus 16 ~~~~mi~HIVlfklK~~~~~~~~~~~~~~l~~L~-~Ip~i~~~~vG~~~-s~e~R~~~~~g~d~~l~~~F~s~edl~~Y~ 93 (120)
T 3bn7_A 16 YFQGMLFHQVFFWLKNPGDKADRDKLIAGLKALK-AIDVIQQLHVGVPA-ATEKRDVVDNSYDVSELMVFKSVEDQKRYR 93 (120)
T ss_dssp ---CCEEEEEEEEESSTTCHHHHHHHHHHHHGGG-GSTTCSEEEEECCC-CCCCCTTCCCCCSEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEEEEEECCCCCHHHHHHHHHHHHhcc-CCCCeEEEEEccCC-CcccccccCCCccEEEEEEECCHHHHHHHh
Confidence 4568999999999999998 677999999999 89999999999999 764 568999999999999999999999
Q ss_pred cChhHHHHHHHHHhhhhceEEEeeec
Q 033664 81 SHPSHVEFSATFSAAIEKIVLLDFPT 106 (114)
Q Consensus 81 ~hP~H~~~~~~~~p~~~~~~v~D~~~ 106 (114)
.||+|+++++.++|++++++++||+.
T Consensus 94 ~HP~H~~~~~~~~p~~e~~~v~D~~~ 119 (120)
T 3bn7_A 94 DHPLLQKFVADCSHLWSKVVVYDSMS 119 (120)
T ss_dssp TCHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHhccEEEEEEee
Confidence 99999999999999999999999975
No 7
>3bgu_A Ferredoxin-like protein of unknown function; ferredoxin-like fold, stress responsive A/B barrel domain, S genomics; 1.50A {Thermobifida fusca}
Probab=99.97 E-value=1.7e-31 Score=175.64 Aligned_cols=98 Identities=18% Similarity=0.450 Sum_probs=91.5
Q ss_pred cccCCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcC
Q 033664 6 EAAMGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASH 82 (114)
Q Consensus 6 ~~~~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~h 82 (114)
...++||+||||||||++++ ++++++.+.+|+++||||+++++|+|. + .+++|||++++++|+|.++|++|+.|
T Consensus 16 ~~~~~mI~HIVlfklK~~~s~e~~~~~~~~l~~L~~~ip~i~~~~~G~~~-s--~~~~g~d~~l~~~F~s~edl~~Y~~h 92 (116)
T 3bgu_A 16 YFQGMGIRHIALFRWNDTVTPDQVEQVITALSKLPAAIPELKNYAFGADL-G--LAAGNYDFAVVADLDGEDGFRAYQDH 92 (116)
T ss_dssp CCSSCEEEEEEEEEECTTCCHHHHHHHHHHHHHCCCCCTTEEEEEEEECC-S--CSTTCCSEEEEEEEEHHHHHHHHHHS
T ss_pred hcCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHHhhcCCceEEEEEccCC-C--CCCCCeeEEEEEEECCHHHHHHHhcC
Confidence 45678999999999999998 678889999999999999999999999 5 56789999999999999999999999
Q ss_pred hhHHHHHHHHHhhhhceEEEeeec
Q 033664 83 PSHVEFSATFSAAIEKIVLLDFPT 106 (114)
Q Consensus 83 P~H~~~~~~~~p~~~~~~v~D~~~ 106 (114)
|+|+++.+.++|++++++++||+.
T Consensus 93 P~H~~~~~~~~p~~~~~~v~D~~i 116 (116)
T 3bgu_A 93 PDHRAALAIIAPMLADRVAVQFAL 116 (116)
T ss_dssp HHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHhCceEEEEEEC
Confidence 999999999999999999999974
No 8
>3fmb_A Dimeric protein of unknown function and ferredoxi fold; YP_212648.1, stress responsive A/B barrel domain; HET: MSE; 1.85A {Bacteroides fragilis}
Probab=99.97 E-value=7.2e-31 Score=173.21 Aligned_cols=95 Identities=22% Similarity=0.434 Sum_probs=86.9
Q ss_pred cCCcEEEEEEEEecCCCCH-------HHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 8 AMGEFKHLVIVKFKEGVVV-------EDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 8 ~~~mi~HiVlfk~k~~~~~-------~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
..+||+||||||||++++. +++.+.|.+|+++||||+++++|+|. ++ +++||++++++|+|.+++++|+
T Consensus 17 ~~~mI~HIVlfklK~~~~~~~~~~~~~~~~~~l~~L~~~IP~i~~~~vG~~~-s~---~~~yd~~l~~~F~s~e~l~~Y~ 92 (118)
T 3fmb_A 17 FQGMVKHIVLFKLRDDVPVEEKLVVMNSFKEAIEALPAKISVIRKIEVGLNM-NP---GETWNIALYSEFDNLDDVKFYA 92 (118)
T ss_dssp CCSCEEEEEEEEECTTSCHHHHHHHHHHHHHHHHTGGGTCTTCSEEEEEECC-CT---TCCCCEEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHhhccCCCeEEEEEeccC-CC---CCCceEEEEEEECCHHHHHHHh
Confidence 3589999999999999982 34567899999999999999999998 64 4799999999999999999999
Q ss_pred cChhHHHHHHHHHhhhhceEEEeeec
Q 033664 81 SHPSHVEFSATFSAAIEKIVLLDFPT 106 (114)
Q Consensus 81 ~hP~H~~~~~~~~p~~~~~~v~D~~~ 106 (114)
.||+|+++++.++|++++++++||+.
T Consensus 93 ~HP~H~~~~~~~~p~~e~~~vvDye~ 118 (118)
T 3fmb_A 93 THPEHVAAGKILAETKESRACVDYEF 118 (118)
T ss_dssp HSHHHHHHHHTTTTTEEEEEEEEEEC
T ss_pred CCHhHHHHHHHHHHhhcccEEEEEEC
Confidence 99999999999999999999999984
No 9
>3bde_A MLL5499 protein; stress responsive A/B barrel domain, structural genomics, JO center for structural genomics, JCSG; 1.79A {Mesorhizobium loti}
Probab=99.97 E-value=2.1e-30 Score=171.39 Aligned_cols=97 Identities=25% Similarity=0.467 Sum_probs=87.9
Q ss_pred ccCCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcCh
Q 033664 7 AAMGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHP 83 (114)
Q Consensus 7 ~~~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP 83 (114)
..++||+||||||||++++ ++++.+.+.+|+++||||+++++|+|. ++ +++ ||++++++|+|.+++++|+.||
T Consensus 16 ~~~~mI~HIVlfklK~~~~~e~~~~~~~~l~~L~~~Ip~I~~~~vG~~~-~~--~~~-~d~~l~~~F~s~edl~~Y~~HP 91 (120)
T 3bde_A 16 YFQGMIRHTVVFTLKHASHSLEEKRFLVDAKKILSAIRGVTHFEQLRQI-SP--KID-YHFGFSMEFADQAAYTRYNDHP 91 (120)
T ss_dssp --CCCEEEEEEEEESSCTTCHHHHHHHHHHHHHHHTSTTCEEEEEEECC-CS--SSC-CCEEEEEEESSHHHHHHHHTSH
T ss_pred CCCCcEEEEEEEEECCCCCHHHHHHHHHHHHHhhccCCceEEEEEccCC-CC--CCC-ccEEEEEEECCHHHHHHHhCCH
Confidence 4568999999999999988 678899999999999999999999999 54 334 9999999999999999999999
Q ss_pred hHHHHH-HHHHhhhhceEEEeeecC
Q 033664 84 SHVEFS-ATFSAAIEKIVLLDFPTV 107 (114)
Q Consensus 84 ~H~~~~-~~~~p~~~~~~v~D~~~~ 107 (114)
+|++++ +.++|++++++++||+..
T Consensus 92 ~H~~~v~~~~~p~~e~~~vvD~e~~ 116 (120)
T 3bde_A 92 DHVAFVRDRWVPEVEKFLEIDYVPL 116 (120)
T ss_dssp HHHHHHHHTHHHHEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhccEEEEEEEEe
Confidence 999995 789999999999999875
No 10
>2ftr_A BH0200; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 1.40A {Bacillus halodurans} SCOP: d.58.4.15
Probab=98.68 E-value=2e-07 Score=59.63 Aligned_cols=91 Identities=12% Similarity=0.046 Sum_probs=71.7
Q ss_pred CcEEEEEEEEecCCCC--HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 10 GEFKHLVIVKFKEGVV--VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~--~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
+||+.+|+++-+++.. .+-..+....|..++||++++.+.+.... .+...+|+.+..+.|+|.+++++...+|+-++
T Consensus 7 ~Mik~~vly~~~~~~e~F~~yy~~~H~PL~~~~pgl~~y~~~~~~~~-~~~~~~yd~iael~fds~ea~~aa~~s~e~~~ 85 (108)
T 2ftr_A 7 MMVKLIALYEQPEDKQAFDEHYFNTHAPLTRKIPGLRDMKVTRIVGS-PMGESKFYLMCEMYYDDHESLQQAMRTDEGKA 85 (108)
T ss_dssp EEEEEEEEEECCSCHHHHHHHHHHTHHHHHTTSTTCCEEEEEEEEEB-TTBCCSEEEEEEEEESSHHHHHHHHHSHHHHH
T ss_pred ceEEEEEEEeCCCCHHHHHHHHHHhhHHHHhhCCCceEEEEEeccCC-CCCCCCeeEEEEEEECCHHHHHHHHcCHhHHH
Confidence 5899999999777611 44455667788888999999988876522 23456899999999999999999999998888
Q ss_pred HHHHHHhhhhceEE
Q 033664 88 FSATFSAAIEKIVL 101 (114)
Q Consensus 88 ~~~~~~p~~~~~~v 101 (114)
+.+.+..+.+...+
T Consensus 86 ~~~D~~~F~d~~~~ 99 (108)
T 2ftr_A 86 SGKDAMKFAGKLLT 99 (108)
T ss_dssp HHHHHHHHTGGGEE
T ss_pred HHHHHHHhcCCCcE
Confidence 88888888765433
No 11
>3hf5_A 4-methylmuconolactone methylisomerase; ferredoxin, ferredoxin-like fold, beta-barrel, biodegradation, ortho- cleavage; HET: 3ML; 1.40A {Pseudomonas reinekei} SCOP: d.58.4.19 PDB: 3hds_A* 3hfk_A* 2ifx_A*
Probab=98.58 E-value=1.1e-06 Score=57.08 Aligned_cols=94 Identities=10% Similarity=0.019 Sum_probs=72.7
Q ss_pred CCcEEEEEEEEecCCCCHHHHHH---HHHHchhcCCcEeEEEeecccCChhhh-----c-CcccEEEEEEECCHHhHHHh
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVK---GMKKLVSEIDAVKSFEWGQDVEGQEML-----R-QGFTHAFLMTFNKKEDYTTF 79 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~---~l~~L~~~iP~v~~~~~G~~~~s~~~~-----~-~~~~~~l~~~F~s~~al~~Y 79 (114)
.+||+.++|++=|++.|.+++.+ ....|...+||++.+..-.-...+.+. . ..||-+..+-|+|.+++++.
T Consensus 8 ~rMiKli~ll~Rk~gmS~EeF~~~w~~Hapla~~lpGl~~Y~q~~v~~~~~~~~~~~~~~~~~DgiaElwF~d~ea~~aa 87 (116)
T 3hf5_A 8 GRMIRILYLLVKPESMSHEQFRKECVVHFQMSAGMPGLHKYEVRLVAGNPTDTHVPYLDVGRIDAIGECWFASEEQYQVY 87 (116)
T ss_dssp HTSEEEEEEEECCTTSCHHHHHHHHHHHHHHTTTCTTCSEEEEEEEEECCCCCSSCBCCCCCCCEEEEEEESSHHHHHHH
T ss_pred CceEEEEEEEecCCCcCHHHHHHHHHHHHHHHHhCcCCccEEEEEEecCCCCCCCCcCCCCCcCEEEEEEECCHHHHHHH
Confidence 37999999999999999655554 566666679999887654422111111 1 28999999999999999999
Q ss_pred hcChhHHHHHHHHHhhhhceEEE
Q 033664 80 ASHPSHVEFSATFSAAIEKIVLL 102 (114)
Q Consensus 80 ~~hP~H~~~~~~~~p~~~~~~v~ 102 (114)
..+|..++..+....++..+..+
T Consensus 88 ~~sp~~~a~~~d~~~F~~~i~~~ 110 (116)
T 3hf5_A 88 MESDIRKAWFEHGKYFIGQLKPF 110 (116)
T ss_dssp HHCHHHHHHHHHHHHHCSEEEEE
T ss_pred hCCHHHHHHHhhHHHhhhhhhhe
Confidence 99999999999888888776554
No 12
>1y0h_A Hypothetical protein RV0793; ferredoxin-like fold, alpha+beta sandwich with antiparallel sheet, structural genomics, PSI; 1.60A {Mycobacterium tuberculosis} SCOP: d.58.4.11
Probab=98.56 E-value=6e-07 Score=55.83 Aligned_cols=95 Identities=7% Similarity=0.114 Sum_probs=70.0
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHH
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHV 86 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~ 86 (114)
+||.-++.|+.|++. .+++.+.+..+ ..+-||-+++.+.++ .++ -.+.++..|+|.++++++..+|..+
T Consensus 4 ~mi~v~~~~~vkpg~-~~~~~~~~~~~~~~~~~epG~l~~~~~~~-~~~------~~~~~~e~w~~~~a~~~h~~s~~~~ 75 (102)
T 1y0h_A 4 SPVAVIARFMPRPDA-RSALRALLDAMITPTRAEDGCRSYDLYES-ADG------GELVLFERYRSRIALDEHRGSPHYL 75 (102)
T ss_dssp SCEEEEEEECBCGGG-HHHHHHHHHHHHHHHHHSTTEEEEEEEEE-TTS------SCEEEEEEESSHHHHHHHHTSHHHH
T ss_pred ceEEEEEEEEECCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEe-CCC------CEEEEEEEECCHHHHHHHhcChHHH
Confidence 488899999998874 34444433333 245899999999987 432 2789999999999999999999999
Q ss_pred HHHHHHHhhhhceEEEeeecCCCCCC
Q 033664 87 EFSATFSAAIEKIVLLDFPTVLGKAP 112 (114)
Q Consensus 87 ~~~~~~~p~~~~~~v~D~~~~~~~~~ 112 (114)
++.+.+.++++....+.+...+.+.|
T Consensus 76 ~~~~~~~~~l~~~~~i~~~~~~~~~~ 101 (102)
T 1y0h_A 76 NYRAQVGELLTRPVAVTVLAPLDEAS 101 (102)
T ss_dssp HHHTTSGGGBSSCCEEEEEEEEECCC
T ss_pred HHHHHHHHHhcCCcEEEEEEEcCCCC
Confidence 99999999987644444333333333
No 13
>3kkf_A Putative antibiotic biosynthesis monooxygenase; structural genomics, joint center for structural genomics, JCSG; HET: MSE P6G; 1.30A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=3.1e-06 Score=53.29 Aligned_cols=97 Identities=11% Similarity=0.121 Sum_probs=77.6
Q ss_pred cCCcEEEEEEEEecCCCCHHHHHHHHHHch----hcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcCh
Q 033664 8 AMGEFKHLVIVKFKEGVVVEDIVKGMKKLV----SEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHP 83 (114)
Q Consensus 8 ~~~mi~HiVlfk~k~~~~~~~~~~~l~~L~----~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP 83 (114)
++.||..++-++.||+. .+++.+.+..+. .+-||-+++.+.++.. .+-.+.++-.|+|.+++++.+.+|
T Consensus 2 ~~~mi~via~~~vkpg~-~~~f~~~l~~~~~~s~r~EpGcl~y~~~~~~~------~p~~~~~~E~w~d~~a~~~H~~s~ 74 (105)
T 3kkf_A 2 AENNMVRLSRIIIDPER-LEEYNAYLKEEIEVSMRLEPGVLVLYAVAEKE------RPNHVTILEIYADEAAYKSHIATP 74 (105)
T ss_dssp GGGCEEEEEEEEECGGG-HHHHHHHHHHHHHHHHHHCTTEEEEEEEECSS------CTTEEEEEEEESSHHHHHHHHTSH
T ss_pred CCCCEEEEEEEEECcCc-HHHHHHHHHHHHHHHHhCCCCcEEEEEEEeCC------CCCEEEEEEEECCHHHHHHHhcCH
Confidence 46799999999999874 445554444432 4589999999998762 334799999999999999999999
Q ss_pred hHHHHHHHHHhhhhceEEEeeecCCCCC
Q 033664 84 SHVEFSATFSAAIEKIVLLDFPTVLGKA 111 (114)
Q Consensus 84 ~H~~~~~~~~p~~~~~~v~D~~~~~~~~ 111 (114)
..+++.+.+.+++++.-+........++
T Consensus 75 ~~~~~~~~~~~~l~~~~~~~l~pi~~~~ 102 (105)
T 3kkf_A 75 HFKKYKEGTLDMVQMLELIDATPLIPGL 102 (105)
T ss_dssp HHHHHHHHHGGGEEEEEEEEECCSSTTC
T ss_pred HHHHHHHHHHHHhhCcceEEEeecCccc
Confidence 9999999999999988777776655444
No 14
>2fb0_A Conserved hypothetical protein; SAD, bacteroides thetaiotaom structural genomics, PSI, protein structure initiative; 2.10A {Bacteroides thetaiotaomicron}
Probab=98.52 E-value=4.5e-06 Score=51.07 Aligned_cols=86 Identities=12% Similarity=0.115 Sum_probs=67.9
Q ss_pred cCCcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChh
Q 033664 8 AMGEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPS 84 (114)
Q Consensus 8 ~~~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~ 84 (114)
+++||.-++-++.|++. .+++.+.+..+ ..+-||-+++.+.++.. .+-.+.++..++|.++++++..+|.
T Consensus 1 ~~~mi~v~~~~~vkpg~-~~~~~~~~~~~~~~~~~epG~l~~~~~~~~~------~p~~~~~~e~w~~~~a~~~h~~s~~ 73 (94)
T 2fb0_A 1 ANSMIRLNVFVRVNETN-REKAIEAAKELTACSLKEEGCIAYDTFESST------RRDVFMICETWQNAEVLAAHEKTAH 73 (94)
T ss_dssp CCCCEEEEEEEECCTTT-HHHHHHHHHHHHHHHTTSTTEEEEEEEECSS------CTTEEEEEEEESSHHHHHHHTTSHH
T ss_pred CCcEEEEEEEEEECccc-HHHHHHHHHHHHHHHhcCCCceEEEEEEcCC------CCCEEEEEEEECCHHHHHHHhCCHH
Confidence 35799999999999885 34444443333 24689999999999762 2237999999999999999999999
Q ss_pred HHHHHHHHHhhhhceE
Q 033664 85 HVEFSATFSAAIEKIV 100 (114)
Q Consensus 85 H~~~~~~~~p~~~~~~ 100 (114)
.+++.+.+.++++..-
T Consensus 74 ~~~~~~~~~~~l~~~p 89 (94)
T 2fb0_A 74 FAQYVGIIQELAEMKL 89 (94)
T ss_dssp HHHHHHHHHHHSEEEE
T ss_pred HHHHHHHHHHHhcCCc
Confidence 9999999999886543
No 15
>3gz7_A Putative antibiotic biosynthesis monooxygenase; NP_888398.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 2.15A {Bordetella bronchiseptica}
Probab=98.41 E-value=8.5e-06 Score=52.54 Aligned_cols=90 Identities=9% Similarity=0.181 Sum_probs=69.7
Q ss_pred cCCcEEEEEEEEecCCCCHHHHHHHH---HHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHH-HhhcCh
Q 033664 8 AMGEFKHLVIVKFKEGVVVEDIVKGM---KKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYT-TFASHP 83 (114)
Q Consensus 8 ~~~mi~HiVlfk~k~~~~~~~~~~~l---~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~-~Y~~hP 83 (114)
+..||.=|+.++.||+.. +++.+.+ .....+-||-+++.+.++.. .+-.+.++..++|.++++ .|..+|
T Consensus 17 ~~~~i~via~~~vkpg~~-~~f~~~~~~~~~~~r~epGcl~y~l~r~~~------~p~~f~~~E~W~s~eal~~hf~~S~ 89 (115)
T 3gz7_A 17 FQGMIQEIASILVQPGRE-ADFEAGVAQARPLFMRARGCHGVALHRSIE------APQRYTLVVDWETVDNHMVDFRQSA 89 (115)
T ss_dssp CCSCEEEEEEEEBCTTCH-HHHHHHHHHHHHHHHTSTTEEEEEEEEESS------STTEEEEEEEESSHHHHHTTTTTSH
T ss_pred cceEEEEEEEEEECCCCH-HHHHHHHHHHHHHHhcCCCeEEEEEEecCC------CCCEEEEEEEECCHHHHHHHHhcCH
Confidence 568999999999999865 3333333 33334689999999999873 223689999999999999 579999
Q ss_pred hHHHHHHHHHhhhhceEEEee
Q 033664 84 SHVEFSATFSAAIEKIVLLDF 104 (114)
Q Consensus 84 ~H~~~~~~~~p~~~~~~v~D~ 104 (114)
.++++.+.+.|++++.-.+.+
T Consensus 90 hf~~~~~~~~~ll~~~p~i~~ 110 (115)
T 3gz7_A 90 DFQEWRKLVGECFAEPPQVHH 110 (115)
T ss_dssp HHHHHHHHHGGGBSSCCEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEE
Confidence 999999999999875544433
No 16
>2pd1_A Hypothetical protein; unknown function, NE2512 protein, structural genomics, APC72 2, protein structure initiative; 1.86A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=98.40 E-value=9.2e-06 Score=50.62 Aligned_cols=81 Identities=9% Similarity=0.032 Sum_probs=65.8
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
|+||.-++-|+.||+. .+++.+.+..+ ..+-||-+++.+.++ . +-.+.++-.|+|.++++++..+|..
T Consensus 3 M~~i~v~~~~~vkpg~-~~~~~~~l~~~~~~~~~epG~l~~~~~~~-~-------p~~~~~~E~w~~~~a~~~H~~s~~~ 73 (104)
T 2pd1_A 3 MTKLALFVRLEAKPGQ-EAALADFLASALPLANAESGTTAWFALKF-G-------PSTFGVFDAFADEAGRQAHLNGQIA 73 (104)
T ss_dssp TCCEEEEEEEEBCTTC-HHHHHHHHHHTHHHHHTCTTEEEEEEEEC-S-------SSEEEEEEEESSHHHHHHHHTSHHH
T ss_pred ceEEEEEEEEEeCCCC-HHHHHHHHHHHHHHHhCCCCcEEEEEEec-C-------CCEEEEEEEECCHHHHHHHhCCHHH
Confidence 6789999999999875 44555544444 235899999988876 2 1279999999999999999999999
Q ss_pred HHHHHHHHhhhhc
Q 033664 86 VEFSATFSAAIEK 98 (114)
Q Consensus 86 ~~~~~~~~p~~~~ 98 (114)
+++.+.+.++++.
T Consensus 74 ~~~~~~~~~ll~~ 86 (104)
T 2pd1_A 74 AALMANAATLLSS 86 (104)
T ss_dssp HHHHHHHHHHBSS
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999876
No 17
>2bbe_A Hypothetical protein SO0527; MCSG, structural genomics, PSI, protein structure in midwest center for structural genomics; 1.97A {Shewanella oneidensis}
Probab=98.34 E-value=1.1e-05 Score=50.83 Aligned_cols=83 Identities=12% Similarity=0.193 Sum_probs=68.2
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
|+||.-++-|+.||+. .+++.+.+..+ ..+-||-+++.+.++.. .+-.+.++..|+|.++++++..+|..
T Consensus 11 M~mi~v~~~~~vkpg~-~~~f~~~~~~~~~~~~~epGcl~~~~~~~~~------~p~~~~~~E~w~~~~a~~~H~~s~~~ 83 (108)
T 2bbe_A 11 QQQIVCVASFLSKEGK-TEALIAALASLIPDTRREAGCIRYELNVSRD------EPRRVTFVEKFVDIAAFDEHCAKDAI 83 (108)
T ss_dssp SSSEEEEEEEEECTTC-HHHHHHHHHTTHHHHHTSTTEEEEEEEECSS------STTEEEEEEEESSHHHHHHHHTSHHH
T ss_pred CcEEEEEEEEEECCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEecCC------CCCEEEEEEEECCHHHHHHHhcChHH
Confidence 7899999999999875 45555555444 23589999999999762 22378999999999999999999999
Q ss_pred HH-HHHHHHhhhhc
Q 033664 86 VE-FSATFSAAIEK 98 (114)
Q Consensus 86 ~~-~~~~~~p~~~~ 98 (114)
++ +.+.+.+++++
T Consensus 84 ~~~~~~~~~~~l~~ 97 (108)
T 2bbe_A 84 QHYFHQVMPELVES 97 (108)
T ss_dssp HHHHHHTHHHHEEE
T ss_pred HHHHHHHHHHhccc
Confidence 99 99999999877
No 18
>3e8o_A Uncharacterized protein with erredoxin-like fold; putative antibiotic biosynthesis monooxygenase; HET: MSE; 1.40A {Deinococcus radiodurans}
Probab=98.34 E-value=1.4e-05 Score=51.46 Aligned_cols=89 Identities=6% Similarity=-0.045 Sum_probs=68.7
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
+.||.-++-|+.|++. .+++.+.+..+ ..+-||-+++.+.++.. .+-.+.++-.|+|.++++++..+|..
T Consensus 17 ~~mi~via~~~vkpg~-~~~~~~~l~~~~~~~r~EpGcl~y~l~~~~~------dp~~f~~~E~W~d~ea~~aH~~s~~~ 89 (119)
T 3e8o_A 17 TTMVISHGTLSASAEH-AAHLRQLLVHIAQATRQEDGCLLYLVSEDLS------QPGHFLITEHWDNLGAMHTHLALPGV 89 (119)
T ss_dssp -CCEEEEEEEECCTTT-HHHHHHHHHHHHHHHTTSTTEEEEEEEEETT------STTEEEEEEEESSHHHHHHHHTCHHH
T ss_pred CceEEEEEEEEECCCC-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC------CCCEEEEEEEECCHHHHHHHHcCHHH
Confidence 5799999999999875 44444444333 34699999999998762 33489999999999999999999999
Q ss_pred HHHHHHHHhhhhceEEEee
Q 033664 86 VEFSATFSAAIEKIVLLDF 104 (114)
Q Consensus 86 ~~~~~~~~p~~~~~~v~D~ 104 (114)
+++.+.+.+++..-..+.+
T Consensus 90 ~~~~~~~~~ll~~~~~i~~ 108 (119)
T 3e8o_A 90 TQAIDALKHLNVTDLKITA 108 (119)
T ss_dssp HHHHHHHHHTTCCCCEEEE
T ss_pred HHHHHHHHHHhcCCCEEEE
Confidence 9999999999654333333
No 19
>2gff_A LSRG protein; dimeric alpha+beta barrel ferredoxin fold, sugar binding protein; 1.75A {Yersinia pestis} PDB: 3qmq_A
Probab=98.33 E-value=1.1e-05 Score=50.66 Aligned_cols=81 Identities=10% Similarity=0.110 Sum_probs=64.8
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
||.-++-++.||+. .+++.+.+..+ ..+-||-+++.+.++.. .+-.+.++..|+|.++++++..+|..++
T Consensus 1 Mi~vi~~~~vkpg~-~~~~~~~~~~~~~~~r~epG~l~~~~~~~~~------~p~~~~~~E~w~d~~a~~~h~~s~~~~~ 73 (106)
T 2gff_A 1 MHVTLVEINVKEDK-VDQFIEVFRANHLGSIREAGNLRFDVLRDEH------IPTRFYIYEAYTDEAAVAIHKTTPHYLQ 73 (106)
T ss_dssp CEEEEEEEEBCGGG-HHHHHHHHHHHHHHHHTSTTEEEEEEEEESS------CTTEEEEEEEESSHHHHHHHTTSHHHHH
T ss_pred CEEEEEEEEECcCC-HHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC------CCCEEEEEEEECCHHHHHHHhcCHHHHH
Confidence 78888899998874 44444444333 24689999999999872 2337999999999999999999999999
Q ss_pred HHHHHHhhhhc
Q 033664 88 FSATFSAAIEK 98 (114)
Q Consensus 88 ~~~~~~p~~~~ 98 (114)
+.+.+.++++.
T Consensus 74 ~~~~~~~~l~~ 84 (106)
T 2gff_A 74 CVEQLAPLMTG 84 (106)
T ss_dssp HHHHHGGGBSS
T ss_pred HHHHHHHHhcC
Confidence 99999999864
No 20
>2jdj_A HAPK, REDY-like protein; prodigiosin, biosynthesis, biosynthetic protein; 2.00A {Hahella chejuensis}
Probab=98.29 E-value=2.6e-05 Score=49.70 Aligned_cols=83 Identities=7% Similarity=0.055 Sum_probs=69.4
Q ss_pred EEEEEEEEecCCCCHHHHHHH----HHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 12 FKHLVIVKFKEGVVVEDIVKG----MKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 12 i~HiVlfk~k~~~~~~~~~~~----l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
-.-|++|+||++++.+.+.+- -..+..++|+|+++.+-+.. +. ...+|.++-++.++|.+++.+=+.+|.-++
T Consensus 2 ~~iv~~i~L~~g~d~~aFe~w~~evD~P~~~~LpsVrsF~V~R~~-~~--g~~py~yiEvi~v~s~eaf~~~m~S~~~~~ 78 (105)
T 2jdj_A 2 ETIIHKIRLFDVAQADAFEFWVQNVDYATCPDLPSVVRFDVHRAS-LQ--ANAPYHYVEVIKITDRAAFDADMETSTFAG 78 (105)
T ss_dssp EEEEEEEEESCGGGHHHHHHHHHHTHHHHGGGCTTEEEEEEEECC-CC--TTCSCSEEEEEEESCHHHHHHHHTSHHHHH
T ss_pred cEEEEEEecCCCCCHHHHHHHHHhchhhhccCCCcceeEEEEecc-cC--CCCCeeEEEEEecCCHHHHHHHhcCHHHHH
Confidence 346889999999996666544 44557789999999999987 43 347999999999999999999999999999
Q ss_pred HHHHHHhhhh
Q 033664 88 FSATFSAAIE 97 (114)
Q Consensus 88 ~~~~~~p~~~ 97 (114)
+.+.+..+.+
T Consensus 79 ~~~dF~~fAd 88 (105)
T 2jdj_A 79 LVQAFSRMAE 88 (105)
T ss_dssp HHHHHHHHEE
T ss_pred HHHHHHHHHH
Confidence 9988777765
No 21
>3bm7_A Protein of unknown function with ferredoxin-like; ferredoxin-like fold, antibiotic biosynthesis monooxygenase, structural genomics; HET: MSE; 1.35A {Caulobacter crescentus}
Probab=98.27 E-value=2.7e-05 Score=49.79 Aligned_cols=90 Identities=7% Similarity=0.089 Sum_probs=70.7
Q ss_pred cCCcEEEEEEEEecCCCCHHHHHHHHHHch----hcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcCh
Q 033664 8 AMGEFKHLVIVKFKEGVVVEDIVKGMKKLV----SEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHP 83 (114)
Q Consensus 8 ~~~mi~HiVlfk~k~~~~~~~~~~~l~~L~----~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP 83 (114)
.++||.-++-|+.||+. .+++.+.+..+. .+-||-+++.+.++.. .+-.+.++-.|+|.+++++...+|
T Consensus 17 ~~~~i~vi~~~~vkpg~-~~~f~~~l~~~~~~~~r~EpGcl~y~l~~~~~------~p~~f~~~E~W~d~ea~~aH~~s~ 89 (115)
T 3bm7_A 17 FQGMIGVVATLKVQPAK-AAEFEKVFLDLAAKVKANEPGCLVYQLTRSKT------EEGVYKVLELYASMDALKHHGGTD 89 (115)
T ss_dssp CSSCEEEEEEEEECGGG-HHHHHHHHHHHHHHHHHHCTTEEEEEEEECSS------STTEEEEEEEESSHHHHHHHHHCH
T ss_pred cCccEEEEEEEEECCCC-HHHHHHHHHHHHHHHhcCCCCcEEEEEEEcCC------CCCEEEEEEEECCHHHHHHHhCCH
Confidence 46789999999999875 444444444433 3579999999999772 223799999999999999999999
Q ss_pred hHHHHHHHHHhhhhceEEEee
Q 033664 84 SHVEFSATFSAAIEKIVLLDF 104 (114)
Q Consensus 84 ~H~~~~~~~~p~~~~~~v~D~ 104 (114)
..+++.+.+.+++++...+.+
T Consensus 90 ~~~~~~~~~~~ll~~~~~i~~ 110 (115)
T 3bm7_A 90 YFKAAGAAMGPTMAGAPVIEY 110 (115)
T ss_dssp HHHHHHHHHGGGEEEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcEEEE
Confidence 999999999999876544443
No 22
>1iuj_A Hypothetical protein TT1380; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.60A {Thermus thermophilus} SCOP: d.58.4.5
Probab=98.26 E-value=5.3e-06 Score=51.67 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=66.2
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHH---chhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKK---LVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~---L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
||.-|+-|+++++. .+++.+.+.. ...+.||-+++.+.++. . .+-.+.++..|+|.++++++..+|.+++
T Consensus 1 Mi~vi~~~~v~~g~-~~~f~~~~~~~~~~~~~~pG~l~~~l~~~~-~-----~~~~~~~~~~W~s~~a~~a~~~s~~~~~ 73 (106)
T 1iuj_A 1 MFVTMNRIPVRPEY-AEQFEEAFRQRARLVDRMPGFIRNLVLRPK-N-----PGDPYVVMTLWESEEAFRAWTESPAFKE 73 (106)
T ss_dssp CEEEEEEECBCGGG-HHHHHHHHHHHGGGGTTSTTEEEEEEEEES-S-----TTSCEEEEEEESCHHHHHHHHTSHHHHH
T ss_pred CEEEEEEEEeCcch-HHHHHHHHHHHHHHhccCCCceEEEEEecC-C-----CCCeEEEEEEECCHHHHHHHhcCHHHHH
Confidence 67778888888775 3444444433 34469999999999987 2 1237899999999999999999999999
Q ss_pred HHHHHH----hhhhc-eEEEeeecC
Q 033664 88 FSATFS----AAIEK-IVLLDFPTV 107 (114)
Q Consensus 88 ~~~~~~----p~~~~-~~v~D~~~~ 107 (114)
+.+.+. +++.. ..+.-|+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~v~~~~~v 98 (106)
T 1iuj_A 74 GHARSGTLPKEAFLGPNRLEAFEVV 98 (106)
T ss_dssp HTTTTSSSSCSCBSSCCEEEEEEEE
T ss_pred HHhccccCCcccccCCCceEEEEEE
Confidence 998887 76543 344444443
No 23
>1q8b_A Protein YJCS; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics, MCSG, unknown function; 1.90A {Bacillus subtilis} SCOP: d.58.4.6
Probab=98.26 E-value=1.5e-05 Score=50.19 Aligned_cols=87 Identities=10% Similarity=0.075 Sum_probs=68.4
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
++||.-++-|+.||+.+.+++.+.+..+ ..+-||-+++.+.++.. .+-.+.++-.|+|.++++++..+|..
T Consensus 11 ~~mi~vi~~~~vkpg~d~~~f~~~l~~~~~~~r~epGcl~~~~~~~~~------~p~~~~~~E~w~d~~a~~~H~~s~~~ 84 (105)
T 1q8b_A 11 ISMHYITACLKIISDKDLNEIMKEFKKLEEETNKEEGCITFHAYPLEP------SERKIMLWEIWENEEAVKIHFTKKHT 84 (105)
T ss_dssp -CEEEEEEEEEECCCSCHHHHHHHHHHHHHHHTTSTTEEEEEEEECCG------GGCEEEEEEEESSHHHHHHHTTSHHH
T ss_pred ceEEEEEEEEEECCCCcHHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC------CCCEEEEEEEECCHHHHHHHhcCHHH
Confidence 5689999999999997455555444443 34589999999999762 22379999999999999999999999
Q ss_pred HHHHHHHHhhhhceEE
Q 033664 86 VEFSATFSAAIEKIVL 101 (114)
Q Consensus 86 ~~~~~~~~p~~~~~~v 101 (114)
+++.+.+.++++..-.
T Consensus 85 ~~~~~~~~~~l~~~e~ 100 (105)
T 1q8b_A 85 IDVQKQELTEVEWLMK 100 (105)
T ss_dssp HHHHTTTCEEEEEEEE
T ss_pred HHHHHHHHHHhhChhh
Confidence 9999988888765433
No 24
>4dpo_A Conserved protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.73A {Methanosarcina mazei}
Probab=98.25 E-value=1.5e-05 Score=51.53 Aligned_cols=84 Identities=13% Similarity=0.124 Sum_probs=67.5
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
|.||.-++-++.||+. .+++.+.+..+ ..+-||-+++.+.++.. .+-.+.++-.++|.++++++..+|..
T Consensus 23 m~MI~via~~~vkpg~-~~~f~~~l~~~~~~~r~EpGcl~y~l~~~~~------dp~~f~~~E~W~d~ea~~aH~~s~~f 95 (119)
T 4dpo_A 23 MLAIRVVAKNQVKPEK-VQEFMNLCKSLIEETLKEEGCIDYGVYQELE------NPEILTMLEEWKDEGSLDQHIRSDHF 95 (119)
T ss_dssp HHCEEEEEEEEBCTTT-HHHHHHHHHHHHHHHHTSTTEEEEEEEEETT------EEEEEEEEEEESSHHHHHHHHTSHHH
T ss_pred cceEEEEEEEEECCCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC------CCCEEEEEEEECCHHHHHHHHcCHHH
Confidence 5699999999999884 44444444333 24689999999999762 33479999999999999999999999
Q ss_pred HHHHHHHHhhhhce
Q 033664 86 VEFSATFSAAIEKI 99 (114)
Q Consensus 86 ~~~~~~~~p~~~~~ 99 (114)
+++.+.+.++++..
T Consensus 96 ~~~~~~~~~ll~~~ 109 (119)
T 4dpo_A 96 KEIFPLLSECLDKE 109 (119)
T ss_dssp HHHHHHHHHTBSSC
T ss_pred HHHHHHHHHHhcCC
Confidence 99999999998743
No 25
>1x7v_A PA3566 protein, APC5058; structural genomics, protein structure initiative, midwest center for structural genomics, alpha-beta plait, PSI; 1.78A {Pseudomonas aeruginosa} SCOP: d.58.4.11
Probab=98.24 E-value=2.8e-05 Score=47.79 Aligned_cols=85 Identities=9% Similarity=0.190 Sum_probs=66.0
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHH
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHV 86 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~ 86 (114)
.||.-++-|+.|++.. +++.+.+..+ ..+-||-+++.+.++.. .+-.+.++..|+|.++++++..+|..+
T Consensus 5 ~mi~v~~~~~vkpg~~-~~~~~~~~~~~~~~~~epG~l~~~~~~~~~------~p~~~~~~e~w~~~~a~~~h~~s~~~~ 77 (99)
T 1x7v_A 5 TPLTLIATITAAPGHA-EALERELRALVAPSRAEAGCLQYDLHQDRH------DSHLFYMIEQWRDDAALERHQNTEHFL 77 (99)
T ss_dssp SCEEEEEEEEECTTCH-HHHHHHHHHHHHHHHHSTTEEEEEEEECSS------CTTEEEEEEEESSHHHHHHHHTSHHHH
T ss_pred CcEEEEEEEEECCCCH-HHHHHHHHHHHHHHhCCCCceEEEEEecCC------CCCEEEEEEEECCHHHHHHHhcCHHHH
Confidence 4899999999998853 4444433333 34689999999999762 223789999999999999999999999
Q ss_pred HHHHHHHhhhhceEE
Q 033664 87 EFSATFSAAIEKIVL 101 (114)
Q Consensus 87 ~~~~~~~p~~~~~~v 101 (114)
++.+.+.++.+...+
T Consensus 78 ~~~~~~~~~~~~~~v 92 (99)
T 1x7v_A 78 RFSRGNEALLQNVKI 92 (99)
T ss_dssp HHHTTCGGGEEEEEE
T ss_pred HHHHHHHHhcCCceE
Confidence 999998888544333
No 26
>3kg0_A Snoab; polyketide, anthracycline, oxygenase, cofactor-independent, oxidoreductase; 1.70A {Streptomyces nogalater} PDB: 3kg1_A 3kng_A
Probab=98.24 E-value=3e-05 Score=50.86 Aligned_cols=81 Identities=4% Similarity=0.077 Sum_probs=66.5
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
..||.-|..|+++++ .+++.+.+..+ ..+.||-+++.+-++.. .+-.+.++..++|.++++++..+|.+
T Consensus 21 ~~mi~via~~~V~pg--~~~f~~~~~~~~~~~~~~pGfi~~~L~r~~~------~p~~yv~~~~W~s~ea~~a~~~S~~f 92 (128)
T 3kg0_A 21 ADEVTFVNRFTVHGA--PAEFESVFARTAAFFARQPGFVRHTLLRERD------KDNSYVNIAVWTDHDAFRRALAQPGF 92 (128)
T ss_dssp CCCEEEEEEEEECSC--HHHHHHHHHHHHHHHHTSTTEEEEEEEECTT------CSSEEEEEEEESSHHHHHHHHHCGGG
T ss_pred CCcEEEEEEEEeCCC--HHHHHHHHHHHHHHHhcCCCccEEEEEEcCC------CCCEEEEEEEECCHHHHHHHHcCHHH
Confidence 479999999999999 55555554443 44699999999999772 23467999999999999999999999
Q ss_pred HHHHHHHHhhhh
Q 033664 86 VEFSATFSAAIE 97 (114)
Q Consensus 86 ~~~~~~~~p~~~ 97 (114)
+++.+.+.+++.
T Consensus 93 ~a~~~~l~~~~~ 104 (128)
T 3kg0_A 93 LPHATALRALST 104 (128)
T ss_dssp HHHHHHHHHHEE
T ss_pred HHHHHhhhhhcc
Confidence 999998888764
No 27
>4dn9_A Antibiotic biosynthesis monooxygenase; structural genomics,protein structure initiative, NEW YORK S genomix research consortium, nysgrc; 2.05A {Chloroflexus aurantiacus}
Probab=98.22 E-value=5e-05 Score=49.30 Aligned_cols=90 Identities=12% Similarity=0.025 Sum_probs=71.1
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEF 88 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~ 88 (114)
..||.=++.|+.||+. .+++.+.+.....+-||-+++.+.++.. .+-.+.++-.++|.++++++..+|..+++
T Consensus 21 ~~Mi~via~~~vkpg~-~~ef~~~l~~~~r~EpGcl~y~l~~~~~------dp~~f~~~E~W~d~ea~~aH~~s~~f~~~ 93 (122)
T 4dn9_A 21 QSMYGLIGKMRATPGQ-RDALIAILVEGASSMPGCLSYVVAQDPK------DPDAIWITEVWDSPESHKASLSLPSVQDA 93 (122)
T ss_dssp -CCEEEEEEEEESTTC-HHHHHHHHHHHTTTCTTEEEEEEEEETT------EEEEEEEEEEESCHHHHHHGGGSHHHHHH
T ss_pred CCcEEEEEEEEECCCC-HHHHHHHHHHHHhCCCCCEEEEEEecCC------CCCEEEEEEEECCHHHHHHHHcCHHHHHH
Confidence 4689999999998874 4555555555555689999999999772 33478999999999999999999999999
Q ss_pred HHHHHhhhhceE-EEeee
Q 033664 89 SATFSAAIEKIV-LLDFP 105 (114)
Q Consensus 89 ~~~~~p~~~~~~-v~D~~ 105 (114)
.+.+.++++..- ++.+.
T Consensus 94 ~~~~~~ll~~~p~i~~~~ 111 (122)
T 4dn9_A 94 IACGRPLIAALDEHHETV 111 (122)
T ss_dssp HHHHGGGEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCeeEEEE
Confidence 999999987553 33333
No 28
>2omo_A DUF176; structural genomics, APC6266, PSI-2, protein structure initi midwest center for structural genomics, MCSG, oxidoreductas; HET: MSE; 1.83A {Nitrosomonas europaea} SCOP: d.58.4.11
Probab=98.19 E-value=3.2e-05 Score=50.22 Aligned_cols=83 Identities=8% Similarity=0.097 Sum_probs=66.7
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHH
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHV 86 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~ 86 (114)
+||.-++-|+.|++. .+++.+.+..+ ..+-||-+.+.+.++.. .+-.+.++-.|+|.++++++..+|..+
T Consensus 22 ~mi~vi~~~~vkpg~-~~~f~~~l~~~~~~sr~EpGcl~y~l~~~~~------dp~~f~~~E~W~d~eal~aH~~s~~~~ 94 (124)
T 2omo_A 22 HMYVTIVYASVKTDK-TEAFKEATRMNHEQSIREPGNMRFDILQSAD------DPTRFVLYEAYKTRKDAAAHKETAHYL 94 (124)
T ss_dssp SSEEEEEEEEBCGGG-HHHHHHHHHHHHHHHTTSTTEEEEEEEEESS------CTTEEEEEEEESSHHHHHHHTTSHHHH
T ss_pred ceEEEEEEEEECcCc-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC------CCCEEEEEEEECCHHHHHHHhCCHHHH
Confidence 589999999998874 44444444443 24589999999998762 233799999999999999999999999
Q ss_pred HHHHHHHhhhhce
Q 033664 87 EFSATFSAAIEKI 99 (114)
Q Consensus 87 ~~~~~~~p~~~~~ 99 (114)
++.+.+.++++..
T Consensus 95 ~~~~~~~~ll~~~ 107 (124)
T 2omo_A 95 TWRDTVADWMAEP 107 (124)
T ss_dssp HHHHHHGGGBSSC
T ss_pred HHHHHHHHHhcCC
Confidence 9999999998753
No 29
>3bf4_A Ethyl TERT-butyl ether degradation ETHD protein; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 2.10A {Ralstonia eutropha JMP134}
Probab=98.14 E-value=1.4e-05 Score=52.70 Aligned_cols=93 Identities=12% Similarity=0.095 Sum_probs=72.0
Q ss_pred cCCcEEEEEEEEecCCCC-H-HHHHHHHHHchhcC--CcEeEEEeecccCC-hhhhcCcccEEEEEEECCHHhHHHhhcC
Q 033664 8 AMGEFKHLVIVKFKEGVV-V-EDIVKGMKKLVSEI--DAVKSFEWGQDVEG-QEMLRQGFTHAFLMTFNKKEDYTTFASH 82 (114)
Q Consensus 8 ~~~mi~HiVlfk~k~~~~-~-~~~~~~l~~L~~~i--P~v~~~~~G~~~~s-~~~~~~~~~~~l~~~F~s~~al~~Y~~h 82 (114)
-+.|++-+|||+-+++.. . +-..+....|..++ |+++++.+.+...+ +.+...+|+.+..+.|+|.+++++.. .
T Consensus 17 ~~~MiKl~VlY~r~~d~~Fd~dYY~~~H~PLv~~l~gp~Lr~y~v~~~~~~~~~g~~~~yd~iael~FdS~eal~aA~-~ 95 (127)
T 3bf4_A 17 FQGMIKVNVMYPYTEGARFDHAYYCDRHMPMVKARLGSACAYYTVEKGLAGSASGAPPAFVAMCAFICDSAENFYAAM-Y 95 (127)
T ss_dssp CCSCEEEEEEEECCTTCCBCHHHHHHTHHHHHHHHHGGGCSEEEEEEEEECSSTTCCCSEEEEEEEEESCHHHHHHHH-H
T ss_pred cCccEEEEEEEcCCCCcchhHHHHHhhHHHHHHHhccccceEEEEEccccCCCCCCCCCEEEEEEEEECCHHHHHHHh-C
Confidence 358999999999998855 4 77778888888788 99999988764422 23446799999999999999999988 5
Q ss_pred hhHHHHHHHHHhhhhceEE
Q 033664 83 PSHVEFSATFSAAIEKIVL 101 (114)
Q Consensus 83 P~H~~~~~~~~p~~~~~~v 101 (114)
|.-+++.+.+..+.+...+
T Consensus 96 ~~~~~v~aDv~nFtd~~~~ 114 (127)
T 3bf4_A 96 YHGAEILGDIANYTDIAPV 114 (127)
T ss_dssp HHHHHHHHTGGGTBCCCCE
T ss_pred ccHHHHHhhHHHhCCCCce
Confidence 6566666677777754433
No 30
>1tuv_A Protein YGIN; menadione oxidase, monooxygenase, CO-crystal with natural PR ferredoxin fold, unknown function; HET: VK3; 1.70A {Escherichia coli} SCOP: d.58.4.11 PDB: 1r6y_A
Probab=98.04 E-value=0.00012 Score=46.61 Aligned_cols=89 Identities=7% Similarity=0.094 Sum_probs=67.7
Q ss_pred cEEEEEEEEecCCC-CHHHHHHHHHHc---hhcCCcEeEEEeecccC--ChhhhcCcccEEEEEEECCHHhHHHhhcChh
Q 033664 11 EFKHLVIVKFKEGV-VVEDIVKGMKKL---VSEIDAVKSFEWGQDVE--GQEMLRQGFTHAFLMTFNKKEDYTTFASHPS 84 (114)
Q Consensus 11 mi~HiVlfk~k~~~-~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~--s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~ 84 (114)
||.-++-++.|++. ..+++.+.+..+ ..+-||-+++.+.++.. .|.....+-.+.++-.++|.+++++...+|.
T Consensus 1 Mi~via~~~vkpg~~~~~~f~~~l~~~~~~~r~EpGcl~y~~~~~~~~~~~~~~~~p~~~~~~E~W~d~~al~aH~~s~h 80 (114)
T 1tuv_A 1 MLTVIAEIRTRPGQHHRQAVLDQFAKIVPTVLKEEGCHGYAPMVDCAAGVSFQSMAPDSIVMIEQWESIAHLEAHLQTPH 80 (114)
T ss_dssp CEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHSTTEEEEEEECCCCCCCTTCCCCTTEEEEEEEESCHHHHHHHHTSHH
T ss_pred CEEEEEEEEECCCcchHHHHHHHHHHHHHHHccCCCcEEEEEEecccccccccCCCCCEEEEEEEECCHHHHHHHhcCHH
Confidence 78889999999995 245555444444 23589999999998820 0000124458999999999999999999999
Q ss_pred HHHHHHHHHhhhhce
Q 033664 85 HVEFSATFSAAIEKI 99 (114)
Q Consensus 85 H~~~~~~~~p~~~~~ 99 (114)
.+++.+.+.+++++.
T Consensus 81 ~~~~~~~~~~l~~~~ 95 (114)
T 1tuv_A 81 MKAYSEAVKGDVLEM 95 (114)
T ss_dssp HHHHHHHHTTTEEEE
T ss_pred HHHHHHHHHHhccCC
Confidence 999999999998764
No 31
>4hl9_A Antibiotic biosynthesis monooxygenase; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 1.93A {Rhodospirillum rubrum}
Probab=98.00 E-value=7.8e-05 Score=48.24 Aligned_cols=96 Identities=7% Similarity=0.026 Sum_probs=72.0
Q ss_pred ccccCCcEEEEEEEEecCCCCHHHHHHHHHHch---hcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhc
Q 033664 5 EEAAMGEFKHLVIVKFKEGVVVEDIVKGMKKLV---SEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 5 ~~~~~~mi~HiVlfk~k~~~~~~~~~~~l~~L~---~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
..-.+.||.=|.-++.||+. .+++.+.+..|. .+=||-+.+.+-++.. .+-.+.++-.++|.++++++..
T Consensus 17 n~y~~sMi~viA~~~vkP~~-~d~~~~~~~~l~~~tr~EpGcl~y~l~~d~~------dp~~f~~~E~w~d~~al~~H~~ 89 (118)
T 4hl9_A 17 NLYFQSMLKVIAQDFIKPEA-IDIVLPLYRELVEKTRQEPLCLAYDLFVDQK------DPGHFVFIEEWPDRAALDIHCA 89 (118)
T ss_dssp ------CEEEEEEEEECGGG-HHHHHHHHHHHHHHHHTSTTCCEEEEEEETT------EEEEEEEEEEESSHHHHHHHHH
T ss_pred hhhhheeeEEEEEEEECchh-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcCC------CCCEEEEEEEeCCHHHHHHHHC
Confidence 34467899999999999884 555555555543 3479999999998762 3347899999999999999999
Q ss_pred ChhHHHHHHHHHhhhhceEEEeeecC
Q 033664 82 HPSHVEFSATFSAAIEKIVLLDFPTV 107 (114)
Q Consensus 82 hP~H~~~~~~~~p~~~~~~v~D~~~~ 107 (114)
.|..+++.+.+.++++....+.+...
T Consensus 90 s~h~~~~~~~l~~~l~~~~~i~~l~~ 115 (118)
T 4hl9_A 90 TEHFTRLVPLINAHQRQDGTVVLMDA 115 (118)
T ss_dssp SHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 99999999999999876666655443
No 32
>2zdo_A Heme-degrading monooxygenase ISDG; ruffling, protein-substrate complex, cytoplasm, iron, metal-binding, oxidoreductase; HET: HEM; 1.80A {Staphylococcus aureus} PDB: 1xbw_A
Probab=97.93 E-value=4.1e-05 Score=48.29 Aligned_cols=79 Identities=11% Similarity=0.147 Sum_probs=61.5
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHH--chhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKK--LVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHV 86 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~--L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~ 86 (114)
++||.-|.-|+.+++. .+++.+.+.. .....||-+++.+-++... .++-.+.++..++|.++++++..+|.|+
T Consensus 2 ~mMi~vi~~~~v~pg~-~~~f~~~~~~~~~~~~~pG~i~~~l~r~~~~----~~~~~~~~~~~W~s~ea~~a~~~s~~f~ 76 (109)
T 2zdo_A 2 TMKFMAEARLTLTKGT-AKDIIERFYTRHGIETLEGFDGMFVTQTLEQ----EDFDEVKILTVWKSKQAFTDWLKSDVFK 76 (109)
T ss_dssp CCCEEEEEEEEEETTC-HHHHHHHTTSCCSGGGCTTEEEEEEEEETTC----SSEEEEEEEEEESCHHHHHHHHTSHHHH
T ss_pred cEEEEEEEEEEeCCCC-HHHHHHHHhcccccccCCCeEEEEEEecCCC----CCceEEEEEEEECCHHHHHHHHcCHHHH
Confidence 4699999999999875 4455554444 3346899999999998721 1224799999999999999999999999
Q ss_pred HHHHHH
Q 033664 87 EFSATF 92 (114)
Q Consensus 87 ~~~~~~ 92 (114)
++.+..
T Consensus 77 ~~~~~~ 82 (109)
T 2zdo_A 77 AAHKHV 82 (109)
T ss_dssp HHHTTC
T ss_pred HHHHhh
Confidence 988643
No 33
>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}
Probab=97.75 E-value=0.00033 Score=49.68 Aligned_cols=94 Identities=13% Similarity=0.192 Sum_probs=74.6
Q ss_pred ccCCcEEEEEEEEecCCCCHHHHHHHH-HHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcC
Q 033664 7 AAMGEFKHLVIVKFKEGVVVEDIVKGM-KKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASH 82 (114)
Q Consensus 7 ~~~~mi~HiVlfk~k~~~~~~~~~~~l-~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~h 82 (114)
.+..||..|+-++.||+. .+++.+.+ ..+ ...=||-+.+.+.++.. .+-.+.++-.+.|.+++++...+
T Consensus 112 ~~~~mI~~ia~~~vkpg~-~~~f~~~l~~~~~~~~r~EpGcl~y~~~~d~~------~p~~f~~~E~w~d~~Al~aH~~s 184 (220)
T 3f44_A 112 YADNFVMRLIKVEVKDAD-AEKFSHAVKKEMTTSMASEPGMEIMMSGTNID------NPNEWYFIEVYANDEAYDIHVKT 184 (220)
T ss_dssp --CCCEEEEEEEEECGGG-HHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT------EEEEEEEEEEESSHHHHHHHTTS
T ss_pred CCCceEEEEEEEEECCCC-HHHHHHHHHHHHHHHHhCCCCcEEEEEEEcCC------CCCEEEEEEEECCHHHHHHHhcC
Confidence 357899999999999874 44444444 233 33589999999999772 33478999999999999999999
Q ss_pred hhHHHHHHHHHhhhhceEEEeeecC
Q 033664 83 PSHVEFSATFSAAIEKIVLLDFPTV 107 (114)
Q Consensus 83 P~H~~~~~~~~p~~~~~~v~D~~~~ 107 (114)
|..+++.+.+.+++++.-+..+...
T Consensus 185 ~hf~~~~~~~~~ll~~~~v~~l~p~ 209 (220)
T 3f44_A 185 PHYKEYIEETDGMVKSRDVKTLVRD 209 (220)
T ss_dssp HHHHHHHHHTTTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCceEEeech
Confidence 9999999999999988877776654
No 34
>1tz0_A Hypothetical protein; structural genomics, protein structure initiative, MCSG, HYP protein, PSI; 1.84A {Bacillus cereus atcc 14579} SCOP: d.58.4.5
Probab=97.68 E-value=5.2e-05 Score=48.60 Aligned_cols=96 Identities=11% Similarity=0.134 Sum_probs=66.5
Q ss_pred cCC-cEEEEEEEEecCCCCHHHHHHHHH--HchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChh
Q 033664 8 AMG-EFKHLVIVKFKEGVVVEDIVKGMK--KLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPS 84 (114)
Q Consensus 8 ~~~-mi~HiVlfk~k~~~~~~~~~~~l~--~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~ 84 (114)
+|+ ||.-|..|+++++.. +++.+.+. .+....||-+++.+-++. .. ..+=.+.+++.++|+++++++..+|.
T Consensus 3 ~~~~Mi~vi~~~~V~~g~~-~~fe~~~~~~~~l~~~pGFi~~~llr~~-~~---~~~~~y~~~~~W~s~eaf~aw~~S~~ 77 (114)
T 1tz0_A 3 AMGYMFIETKTFTVKEGTS-NIVVERFTGEGIIEKFEGFIDLSVLVKK-VR---RGDEEVVVMIRWESEEAWKNWETSEE 77 (114)
T ss_dssp --CCCEEEEEEEEECTTCH-HHHHHHTCSCCSGGGBTTEEEEEEEECC-CS---SSSEEEEEEEEESCHHHHHHHHTCSC
T ss_pred CccceEEEEEEEEECCCcH-HHHHHHHhccchhhcCCCeeEEEEEEcC-CC---CCCcEEEEEEEECCHHHHHHHHcCHH
Confidence 566 999999999988754 44444433 344569999999999887 31 12337999999999999999999999
Q ss_pred HHHHHHHH----Hhhh-hceEEEeeecCC
Q 033664 85 HVEFSATF----SAAI-EKIVLLDFPTVL 108 (114)
Q Consensus 85 H~~~~~~~----~p~~-~~~~v~D~~~~~ 108 (114)
|++..+.. .|.. ....+.=|++..
T Consensus 78 f~~~~~~~~~~~~~~~~~~p~~~~~evv~ 106 (114)
T 1tz0_A 78 HLAGHRAGRGKPKPDHIINVDHAVYYVKS 106 (114)
T ss_dssp CCGGGSSCCSCCCGGGEEEEEEEEEECCC
T ss_pred HHHHHHhccCCCCcccccCCeeEEEEEEE
Confidence 99887643 2333 333444455543
No 35
>1sqe_A Hypothetical protein PG130; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Staphylococcus aureus} SCOP: d.58.4.5 PDB: 2zdp_A* 3lgm_A* 3lgn_A* 3qgp_A*
Probab=97.55 E-value=0.00025 Score=44.53 Aligned_cols=77 Identities=8% Similarity=0.169 Sum_probs=57.7
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHc--hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHH
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKKL--VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEF 88 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~L--~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~ 88 (114)
||.-|.-|+.+++. .+++.+.+..+ ....||-+++.+-++... ...-.+.++..++|.++++++..+|.|+++
T Consensus 2 Mi~vi~~~~v~pg~-~~~f~~~~~~~~~~~~~pG~l~~~l~r~~~~----~~~~~~~~~~~W~s~ea~~a~~~s~~f~~~ 76 (109)
T 1sqe_A 2 MFMAENRLQLQKGS-AEETIERFYNRQGIETIEGFQQMFVTKTLNT----EDTDEVKILTIWESEDSFNNWLNSDVFKEA 76 (109)
T ss_dssp CEEEEEEEEECTTC-HHHHGGGGGCCTTGGGSTTEEEEEEEEETTC----SSSEEEEEEEEESCHHHHHHHHTSHHHHHC
T ss_pred EEEEEEEEEECCCc-HHHHHHHHhcccccccCCCeEEEEEEEcCCC----CCCcEEEEEEEECCHHHHHHHHcCHHHHHH
Confidence 78888999998874 45555544443 345899999999998721 112479999999999999999999999998
Q ss_pred HHHH
Q 033664 89 SATF 92 (114)
Q Consensus 89 ~~~~ 92 (114)
.+..
T Consensus 77 ~~~~ 80 (109)
T 1sqe_A 77 HKNV 80 (109)
T ss_dssp C---
T ss_pred Hhcc
Confidence 7665
No 36
>3hx9_A Protein RV3592; DI-heme, beta barrel, dimer, oxidoreductase; HET: HEM; 1.75A {Mycobacterium tuberculosis}
Probab=97.51 E-value=0.00029 Score=45.92 Aligned_cols=91 Identities=13% Similarity=0.188 Sum_probs=62.1
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHH
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHV 86 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~ 86 (114)
|||.=|.-|+.+++. .+++.+.+..+ ....||-+++.+-++.. .+=.+.++..++|.++++++..+|...
T Consensus 1 Mmivvi~~~~V~pg~-~~efe~~~~~~~~~~~~~pGfl~~~L~r~~~------~p~~yv~~~~WeS~ea~~aw~~S~fr~ 73 (124)
T 3hx9_A 1 MPVVKINAIEVPAGA-GPELEKRFAHRAHAVENSPGFLGFQLLRPVK------GEERYFVVTHWESDEAFQAWANGPAIA 73 (124)
T ss_dssp -CEEEEEEECCCTTC-HHHHHHHHHHTTTTTTTCTTEEEEEEEEEEE------SCCSEEEEEEESCHHHHHHHHHTHHHH
T ss_pred CEEEEEEEEEECCCC-HHHHHHHHHHHHHHHhcCCCceEEEEEeCCC------CCCEEEEEEEECCHHHHHHHHhChHHH
Confidence 578888888888775 44555444443 34699999999998762 122589999999999999999999433
Q ss_pred HHHH-HHHhhhhceEEEeeecC
Q 033664 87 EFSA-TFSAAIEKIVLLDFPTV 107 (114)
Q Consensus 87 ~~~~-~~~p~~~~~~v~D~~~~ 107 (114)
+-.. ..+|+....=.+-|++.
T Consensus 74 ah~~~~~~~~~~g~p~~efevv 95 (124)
T 3hx9_A 74 AHAGHRANPVATGASLLEFEVV 95 (124)
T ss_dssp TTTTCCCCCCCCCEEEEEEEEE
T ss_pred HhhcccCCCcccCCCceeEEEE
Confidence 3332 25777654444445553
No 37
>2ril_A Antibiotic biosynthesis monooxygenase; YP_001095275.1, putative monooxygenase, antibiotic biosynthe monooxygenase, structural genomics; HET: MSE; 1.26A {Shewanella loihica}
Probab=97.40 E-value=0.0013 Score=40.46 Aligned_cols=68 Identities=9% Similarity=0.104 Sum_probs=51.2
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHH---chhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcC
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKK---LVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASH 82 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~---L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~h 82 (114)
.||.-|..|+.|++.. +++.+.+.. ...+.||-+++.+.++.. ....|.++++..++|.+++++...|
T Consensus 4 ~mi~~i~~~~v~pg~~-~~f~~~~~~~~~~~~~~pG~i~~~l~~~~~----~~~~~~~~~~~~W~s~ea~~a~~~~ 74 (99)
T 2ril_A 4 APVTLINPFKVPADKL-EAAIEYWEAHRDFMAQQPGYLSTQLHQSID----EGATYQLINVAIWQSEADFYQAAQK 74 (99)
T ss_dssp CCEEEEEEEBCCTTCH-HHHHHHHHHHHHHHTTSTTEEEEEEEECSS----TTSSCSEEEEEEESCHHHHHHHHHH
T ss_pred ceEEEEEEEEECCccH-HHHHHHHHHHHHHHhcCCCeeeEEEeecCC----CCCeEEEEEEEEECCHHHHHHHHHh
Confidence 5899999999998854 444443333 234699999999999872 2345678999999999999995554
No 38
>3tvz_A Putative uncharacterized protein YHGC; putative monooxygenase, ABM family, ferredoxin fold, monooxy oxidoreductase; 2.00A {Bacillus subtilis subsp}
Probab=97.26 E-value=0.00076 Score=46.24 Aligned_cols=77 Identities=10% Similarity=0.024 Sum_probs=50.5
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHH---chhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKK---LVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~---L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
..|+.-|..|+++++. .+++.+.+.. .....||-+++.+-++. . + -.+.+++.++|++++++|..+|.|
T Consensus 69 ~~m~~vin~~~V~pg~-~~~Fe~~~~~~~~~l~~~pGfi~~~llr~~-~--~----~~y~~~t~Wes~eaf~aw~~S~~f 140 (172)
T 3tvz_A 69 HPGFAVLNNIAVTQEG-RPLFENKFKNRAGKVENEPGFEAIRVLRPL-D--S----DTYVILTLWETERAFQDWQQSDSY 140 (172)
T ss_dssp CCSEEEEEEEECCGGG-HHHHHHHHTSSHHHHTTSTTEEEEEEEEES-S--S----SEEEEEEEESCHHHHHHHTCC---
T ss_pred CCcEEEEEEEEcCCCc-HHHHHHHHHHhHHHHhcCCCceEEEEEecC-C--C----CEEEEEEEECCHHHHHHHHcCHHH
Confidence 3689889999998774 3444444333 23469999999999877 2 1 257899999999999999999999
Q ss_pred HHHHHHHH
Q 033664 86 VEFSATFS 93 (114)
Q Consensus 86 ~~~~~~~~ 93 (114)
++..+...
T Consensus 141 ~~ah~~~g 148 (172)
T 3tvz_A 141 KEAHKKRG 148 (172)
T ss_dssp --------
T ss_pred HHHHHhcC
Confidence 99887665
No 39
>2go8_A Hypothetical protein YQJZ; SR435, protein structure, structural genomics, PSI, protein initiative, northeast structural genomics consortium; 2.30A {Bacillus subtilis} SCOP: d.58.4.5
Probab=97.23 E-value=0.001 Score=43.36 Aligned_cols=79 Identities=13% Similarity=0.105 Sum_probs=49.2
Q ss_pred CCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 9 MGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
++|+ .|+|.+.+... -.++.+.+..|..++||-++++.-++. .| -...++.+.|++++++++.+|+|
T Consensus 11 ~pm~--aViFe~~~~~~~~~Y~~la~~~~~la~~qpGFI~~Es~~~~-------dg-~~is~SyW~deeai~aW~~~~eH 80 (122)
T 2go8_A 11 PPYY--AVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVREA-------DG-RGITVSYWDSMDAINHWRHHTEH 80 (122)
T ss_dssp SCEE--EEEEEEECC------CHHHHHHHHHHHHSTTEEEEEEEECT-------TS-EEEEEEEESCHHHHHHHHHHC--
T ss_pred CCEE--EEEEEEEeCCchhHHHHHHHHHHHHHhhCCCceEEEEEEcC-------CC-CEEEEEEeCCHHHHHHHHhCHHH
Confidence 4554 45777776644 356677888888889999999854443 13 67889999999999999999999
Q ss_pred HHHHHH-HHhhhh
Q 033664 86 VEFSAT-FSAAIE 97 (114)
Q Consensus 86 ~~~~~~-~~p~~~ 97 (114)
++..+. -...+.
T Consensus 81 r~Aq~~Gr~~w~~ 93 (122)
T 2go8_A 81 QAAKEKGRSVWYE 93 (122)
T ss_dssp -----------CC
T ss_pred HHHHHhHHHHHhc
Confidence 998775 444444
No 40
>3fgv_A Uncharacterized protein with ferredoxin-like fold; phosphoserine aminotransferase SERC, structural genomics; HET: MSE; 1.30A {Silicibacter pomeroyi dss-3}
Probab=97.14 E-value=0.0023 Score=40.55 Aligned_cols=80 Identities=9% Similarity=0.024 Sum_probs=56.3
Q ss_pred EEEEecCCCC-HHHHHHHHHHc---hhcCCcEeE--EEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHH
Q 033664 16 VIVKFKEGVV-VEDIVKGMKKL---VSEIDAVKS--FEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFS 89 (114)
Q Consensus 16 Vlfk~k~~~~-~~~~~~~l~~L---~~~iP~v~~--~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~ 89 (114)
|.++++.... .+++.+.+..| -.+-||=++ +..-++.. . ..-| ..++|.+++++|+..|.-+++.
T Consensus 17 Via~l~~kp~~~~~~~~~~~~lv~~tr~e~Gci~~~y~L~qd~~---~-p~~f-----E~W~s~eal~~h~~~~~~~~~~ 87 (106)
T 3fgv_A 17 VIVKSTPQRGKFNAFAELVGKLVSETRDFPGCLGAYLMLAPERN---E-QVVM-----HIWETPDALEAYLTWRADRGDF 87 (106)
T ss_dssp EEEEECBCTTCHHHHHHHHHHHHHHHHTSTTEEEEEEEEEGGGT---E-EEEE-----EEESSHHHHHHHHHHHTTCHHH
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHHhCCCCCCcceEEEecCCC---C-CCEE-----EEECCHHHHHHHHcCHHHHHHH
Confidence 4445544444 55555555554 335999998 77766652 1 1222 9999999999999999999999
Q ss_pred HHHHhhhhceEEEee
Q 033664 90 ATFSAAIEKIVLLDF 104 (114)
Q Consensus 90 ~~~~p~~~~~~v~D~ 104 (114)
..+.++++.-..+.+
T Consensus 88 ~~l~~lla~~p~I~~ 102 (106)
T 3fgv_A 88 LEINEYLEVEQDFKT 102 (106)
T ss_dssp HHGGGGBSSCCEEEE
T ss_pred HHHHHHhcCCcEEEE
Confidence 999999976655544
No 41
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.38A {Colwellia psychrerythraea} SCOP: d.58.4.0
Probab=97.13 E-value=0.0042 Score=38.45 Aligned_cols=89 Identities=9% Similarity=0.029 Sum_probs=54.9
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHH
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSA 90 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~ 90 (114)
.-.=|+-.+..+...-++..+.......+..|-.-+ -|... ..++. ..++..++++|+|.++..++-++|++++...
T Consensus 4 ~aY~i~~~~v~d~e~y~~Y~~~~~~~l~~~GG~~l~-rg~~~-~lEG~-~~~~~~viieFps~~aa~a~y~SpeYq~a~~ 80 (94)
T 3lo3_A 4 TAYIIVGLTPKDAEKLQQYGARVASTLAKYSGEVLV-KGSVE-QLHGK-FEHKAQVILEFPSREDAYNWYHSEEYQALIS 80 (94)
T ss_dssp CEEEEEEEEECCHHHHHHHHHHHHHHHHTTTCEEEE-EEECE-EEESC-CCCSEEEEEEESSHHHHHHHHHSHHHHTTHH
T ss_pred cEEEEEEEEECCHHHHHHHHHHHHHHHHHcCCEEEE-Ecccc-cccCC-CCCCeEEEEECCCHHHHHHHHCCHHHHHHHH
Confidence 334466666665433445555444444455554444 34333 33331 1479999999999999999999999999887
Q ss_pred HHHhhh-hceEEE
Q 033664 91 TFSAAI-EKIVLL 102 (114)
Q Consensus 91 ~~~p~~-~~~~v~ 102 (114)
.-.... .+.+++
T Consensus 81 ~R~~a~~~~~~iv 93 (94)
T 3lo3_A 81 TRDLGMDSQFQLI 93 (94)
T ss_dssp HHHHHEEEEEEEE
T ss_pred HHHhcCceEEEEe
Confidence 533333 344444
No 42
>3fj2_A Monooxygenase-like protein; structural genomics, joint cente structural genomics, JCSG, protein structure initiative, PS unknown function; HET: MSE; 1.85A {Listeria innocua} PDB: 3fez_A*
Probab=96.84 E-value=0.02 Score=39.80 Aligned_cols=77 Identities=8% Similarity=0.156 Sum_probs=57.2
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHH---chhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHH
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKK---LVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVE 87 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~---L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~ 87 (114)
++.-+..|+++++. .+++.+.+.. .....||-+++..-++. . +-.+.+++.++|++++++|..+++|++
T Consensus 85 gfvv~n~~~V~~g~-~~~Fe~~f~~~~~~l~~~pGFis~eLLr~~-~------~~~yv~lT~WeseeaF~aW~~S~afr~ 156 (186)
T 3fj2_A 85 GIVVFEYIQLRDEE-IPIFLQMYQHASLHFSETPGLQSTKLTKAM-N------TNQFLIVSFWDSEVFFQEWKKTPLHKE 156 (186)
T ss_dssp SEEEEEEEECCGGG-HHHHHHHHHHHHTTGGGSTTEEEEEEEEET-T------SSEEEEEEEESSHHHHHHHTTSHHHHH
T ss_pred CEEEEEEEEcCccc-HHHHHHHHHHhHHhhhcCCCceEEEEEecC-C------CCEEEEEEEECCHHHHHHHHcCHHHHH
Confidence 56666666776654 4444444333 33569999999999987 3 347889999999999999999999999
Q ss_pred HHHHHHhh
Q 033664 88 FSATFSAA 95 (114)
Q Consensus 88 ~~~~~~p~ 95 (114)
.-..+++.
T Consensus 157 ah~~l~~~ 164 (186)
T 3fj2_A 157 ITSIMKKN 164 (186)
T ss_dssp HHHHHHHT
T ss_pred HHHhhhcc
Confidence 98655543
No 43
>2fiu_A Conserved hypothetical protein; alpha-beta, dimeric alpha-beta barrels, structural genomics, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.58.4.16
Probab=96.82 E-value=0.016 Score=36.06 Aligned_cols=88 Identities=10% Similarity=0.050 Sum_probs=53.2
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHHH
Q 033664 12 FKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSAT 91 (114)
Q Consensus 12 i~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~ 91 (114)
-.=|+.++..+...-++..+.......+..|-.=+..|... ..++... .-.++++|+|.++.+++.++|++++....
T Consensus 6 ~Y~I~~~~v~d~e~y~~Y~~~~~~~~~~~gGr~l~~g~~~~-~~eG~~~--~~~viieFpS~~aa~~~~~s~~Yq~a~~~ 82 (99)
T 2fiu_A 6 GYWIAQVDVRDSERYKDYVSTAKPAFERFGANFLARGGSVT-ELEGTAR--ARNVVIEFPSVQHAIDCYNSPEYQAAAKI 82 (99)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHHHHTTCEEEEESCCEE-EEESCCC--SEEEEEEESSHHHHHHHHHSHHHHHHHHH
T ss_pred EEEEEEEEeCCHHHHHHHHHHHHHHHHHcCcEEEEECCCce-EEecCCc--CeEEEEECCCHHHHHHHHcCHHHHHHHHH
Confidence 45566666655433445555444444456664444433333 2222222 27889999999999999999999999875
Q ss_pred HHhhh-hceEEE
Q 033664 92 FSAAI-EKIVLL 102 (114)
Q Consensus 92 ~~p~~-~~~~v~ 102 (114)
-...+ .+++++
T Consensus 83 R~~a~~~~~~iv 94 (99)
T 2fiu_A 83 RQEVADAEMMIV 94 (99)
T ss_dssp HHHHEEEEEEEE
T ss_pred HHhhhceeEEEE
Confidence 43333 334433
No 44
>3f44_A Putative monooxygenase; YP_193413.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.55A {Lactobacillus acidophilus ncfm}
Probab=96.69 E-value=0.031 Score=39.39 Aligned_cols=92 Identities=12% Similarity=0.090 Sum_probs=71.4
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHch----hcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChh
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKLV----SEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPS 84 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L~----~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~ 84 (114)
+..|.+|+-|+.||+. .+++.+.+..+. ..=||-+.+.++++.. .+-.+.++=.|.|.+++++-..+|.
T Consensus 4 ~~pi~~i~~~~vkp~~-~~~f~~~~~~~~~~s~~~E~G~l~y~~~~~~~------~p~~~~~~E~y~d~~A~~~H~~s~h 76 (220)
T 3f44_A 4 ETPIFKIKKLTIAEND-RSEYIRYAEKNMHDSIPAEEGTLLIGSGHDDA------HGEDNYEIEVFRNKGAEDLHIAGSH 76 (220)
T ss_dssp CCCEEEEEEEEECGGG-HHHHHHHHHHHHHHHTTTSTTEEEEEEEEETT------EEEEEEEEEEESSHHHHHHHHTSHH
T ss_pred CCcEEEEEEEEECcch-HHHHHHHHHHHhhhhhccCCCeEEEEEEecCC------CCcEEEEEEEECCHHHHHHHhcCHH
Confidence 3568889999998774 455555444431 2469999999998762 3457999999999999999999999
Q ss_pred HHHHHHHHHhhhhceEEEeeecC
Q 033664 85 HVEFSATFSAAIEKIVLLDFPTV 107 (114)
Q Consensus 85 H~~~~~~~~p~~~~~~v~D~~~~ 107 (114)
.++|.+.+.+++++..+++-...
T Consensus 77 ~~~~~~~~~~~l~~~~~~~l~p~ 99 (220)
T 3f44_A 77 ADDFVETVNKIATKQKVIDLHPE 99 (220)
T ss_dssp HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhhCCceeeeeeE
Confidence 99999999999987666655443
No 45
>1lq9_A Actva-ORF6 monooxygenase; aromatic polyketides, actinorhodin, dihydroka streptomyces coelicolor, oxidoreductase; HET: PG4; 1.30A {Streptomyces coelicolor} SCOP: d.58.4.3 PDB: 1n5q_A* 1n5s_A* 1n5t_A* 1n5v_A*
Probab=96.60 E-value=0.013 Score=37.27 Aligned_cols=83 Identities=11% Similarity=0.094 Sum_probs=62.3
Q ss_pred EEEEEEEEe-cCCCCHHHHHHHHHHch----hcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHh----hcC
Q 033664 12 FKHLVIVKF-KEGVVVEDIVKGMKKLV----SEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTF----ASH 82 (114)
Q Consensus 12 i~HiVlfk~-k~~~~~~~~~~~l~~L~----~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y----~~h 82 (114)
+..|+.|.. +++ ..+++.+.+..+. .+-||-+++..-++. + +-+.+++..++|.++++++ ..+
T Consensus 10 ~v~iva~~~~~pg-~~~~~~~~l~~~~~~~~r~epG~i~y~Lh~~~-d------~~~~v~~e~W~s~ea~~ah~~~~~~s 81 (112)
T 1lq9_A 10 FVAVVTFPVDGPA-TQHKLVELATGGVQEWIREVPGFLSATYHAST-D------GTAVVNYAQWESEQAYRVNFGADPRS 81 (112)
T ss_dssp EEEEEEEEBSSHH-HHHHHHHHHTTTTTGGGGGSTTEEEEEEEEET-T------SSEEEEEEEESCHHHHHHHTTTSHHH
T ss_pred EEEEEEEEecCcc-hHHHHHHHHHHHHHHHhhcCCCeEEEEEEEcC-C------CCeEEEEEEECCHHHHHHHHhcccCC
Confidence 455555554 443 4667777766662 369999999988876 2 2345999999999999999 999
Q ss_pred hhHHHHHHHHHhhhhceEEE
Q 033664 83 PSHVEFSATFSAAIEKIVLL 102 (114)
Q Consensus 83 P~H~~~~~~~~p~~~~~~v~ 102 (114)
|..+++.+.+..+++...++
T Consensus 82 ~~f~~~~~~~~~l~~~~~~~ 101 (112)
T 1lq9_A 82 AELREALSSLPGLMGPPKAV 101 (112)
T ss_dssp HHHHHHHHTSTTBCSCCEEE
T ss_pred HHHHHHHHHhHHHhcCccce
Confidence 99999999888888765443
No 46
>3hhl_A RPA0582; alpha-beta-barrel, structural genomics, PSI-2, protein struc initiative, reductive methylation; HET: MLY MLZ PGE 2PE PE8 1PE PG4; 2.65A {Rhodopseudomonas palustris} PDB: 3hhl_B* 3hhl_C* 3dca_A
Probab=96.52 E-value=0.08 Score=35.14 Aligned_cols=87 Identities=13% Similarity=0.192 Sum_probs=55.9
Q ss_pred CcEEEEEEEEecCC--------CC-HH---HHHHHHHHchhcCCcEeEEEeecccCChhhhc-CcccEEEEEEECCHHhH
Q 033664 10 GEFKHLVIVKFKEG--------VV-VE---DIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLR-QGFTHAFLMTFNKKEDY 76 (114)
Q Consensus 10 ~mi~HiVlfk~k~~--------~~-~~---~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~-~~~~~~l~~~F~s~~al 76 (114)
+.|.=+=|+|||+. ++ .+ +..+....+..+..|=.-+..|... ..++.. ..|+.+++++|+|.++.
T Consensus 23 ~pv~MlNLlrf~~~a~y~dg~~vtd~e~y~~Y~~~~~~~l~~~GG~~l~rG~~~~-~lEG~~~e~~~~~viieFPS~~aa 101 (143)
T 3hhl_A 23 GPIHMLNLVRLRPRAAYPDGRETTGAEAYAAYGRDSGPVSERLGGXVVWQGQFEL-MLIGPQDEHWDHVFIAEYPSVAAF 101 (143)
T ss_dssp SCEEEEEEEEECSBCCCTTCCCCBHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEE-EEESCTTCCCSEEEEEEESCHHHH
T ss_pred CCEEEEehhcccccccCCCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEeecCCce-eEECCCCCCCCeEEEEECCCHHHH
Confidence 56666778899863 22 33 3333444434446554445444444 333322 24899999999999999
Q ss_pred HHhhcChhHHHHHHHHHhhhh
Q 033664 77 TTFASHPSHVEFSATFSAAIE 97 (114)
Q Consensus 77 ~~Y~~hP~H~~~~~~~~p~~~ 97 (114)
.++.++|+++++...=...++
T Consensus 102 ~a~y~SpeYq~a~~~R~~a~~ 122 (143)
T 3hhl_A 102 VEMIRDPVYREAVKHRQAAVE 122 (143)
T ss_dssp HHHHHCHHHHHHHHHHHHHEE
T ss_pred HHHHcCHHHHHHHHHHHHhhc
Confidence 999999999999874334444
No 47
>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}
Probab=96.46 E-value=0.06 Score=38.05 Aligned_cols=92 Identities=10% Similarity=0.116 Sum_probs=72.0
Q ss_pred CCcEEEEEEEEecCCCCHHHHHHHHHHch---hcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 9 MGEFKHLVIVKFKEGVVVEDIVKGMKKLV---SEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~~~~~~~~l~~L~---~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
..++.-++-|+.||+.. +++.+.+..+. ..=||.+.+.+.++.. .+-.+.++=.+.|.+++++-..+|..
T Consensus 111 ~~~~~via~~~vkp~~~-e~~~~~~~~~~~~sr~E~Gcl~y~~~~~~~------~p~~f~~~E~w~d~~A~~aH~~s~Hf 183 (219)
T 3mcs_A 111 DNTFAVYTVIDVKPEND-KEFAEIIKNIVETTFNEEGTLLVYLGTDRR------NFNKWCLFEVYKDIDSYLNHRSAKYF 183 (219)
T ss_dssp TTCEEEEEEEEECGGGH-HHHHHHHHHHHHHHHHSTTEEEEEEEEETT------EEEEEEEEEEESSHHHHHHHHTSHHH
T ss_pred CCcEEEEEEEEECcCcH-HHHHHHHHHHHHHHcCCCCeEEEEEEecCC------CCCEEEEEEEECCHHHHHHHhcCHHH
Confidence 35677788888888754 44444444432 2479999999999872 33479999999999999999999999
Q ss_pred HHHHHHHHhhhhceEEEeeecC
Q 033664 86 VEFSATFSAAIEKIVLLDFPTV 107 (114)
Q Consensus 86 ~~~~~~~~p~~~~~~v~D~~~~ 107 (114)
+++.+.+.+++++..+.+....
T Consensus 184 ~~~~~~~~~~l~~~~~~~l~~~ 205 (219)
T 3mcs_A 184 KDYITQTKDMIAGKKRAELQVL 205 (219)
T ss_dssp HHHHHHHGGGEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCceeeccch
Confidence 9999999999988877776554
No 48
>3mcs_A Putative monooxygenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.55A {Fusobacterium nucleatum subsp}
Probab=96.12 E-value=0.097 Score=36.98 Aligned_cols=90 Identities=10% Similarity=0.072 Sum_probs=68.8
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHch----hcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhH
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKKLV----SEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSH 85 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~L~----~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H 85 (114)
..|..|+-|+.||+. .+++.+.+..+. ..=||-+.+.+.++.. .+-.+.++-.|.|.+|+++=..+|..
T Consensus 5 ~pi~~ia~~~vkp~~-~~~f~~~~~~~~~~s~r~EpG~l~y~~~~~~~------~p~~fv~~E~y~d~~A~~~H~~s~Hf 77 (219)
T 3mcs_A 5 VPILNVYDFEVKKDK-ETSYKSATEDYVNKTMGVEQGVLGLFAATDER------DKTTSYIVEIYNDYLAFSNHTKNQAS 77 (219)
T ss_dssp CCEEEEEEEEECGGG-HHHHHHHHHHHHHHHHHHCSSEEEEEEEEECS------SSCEEEEEEEESSHHHHHHHHHSHHH
T ss_pred ccEEEEEEEEECcCc-HHHHHHHHHHHhhhhhhcCCCeEEEEEEeeCC------CCCEEEEEEEECCHHHHHHHhCCHHH
Confidence 567888888888774 455555544431 2469999999999772 34489999999999999999999999
Q ss_pred HHHHHHHHhhhhceE-EEeeec
Q 033664 86 VEFSATFSAAIEKIV-LLDFPT 106 (114)
Q Consensus 86 ~~~~~~~~p~~~~~~-v~D~~~ 106 (114)
++|.+.+.+++++.. ..++..
T Consensus 78 ~~f~~~~~~~l~~~~~~~~~~~ 99 (219)
T 3mcs_A 78 KDFKAVIPQIAEGNLNSAEIDV 99 (219)
T ss_dssp HHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHhCCcccceeeE
Confidence 999999999987543 333433
No 49
>4ae5_A Signal transduction protein trap; signaling protein, phosphorylation, RNAIII, quorum SENS biofilm, toxin production; 1.85A {Staphylococcus aureus}
Probab=93.56 E-value=0.94 Score=30.68 Aligned_cols=69 Identities=14% Similarity=0.247 Sum_probs=48.6
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHc---hhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHH
Q 033664 12 FKHLVIVKFKEGVVVEDIVKGMKKL---VSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEF 88 (114)
Q Consensus 12 i~HiVlfk~k~~~~~~~~~~~l~~L---~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~ 88 (114)
+.-+-.|+++++. .+++.+.+... .+..||.+++.+=++. . +=++.++..++|.++++++..+++.++.
T Consensus 67 fiv~N~~~V~~g~-~~~fE~rf~~r~~~l~~~pGF~~f~LLr~~-~------~~~y~v~T~Wes~e~Fe~W~~S~aFr~a 138 (167)
T 4ae5_A 67 FYCAIFIPSTEDH-AYQLEKKLISVDDNFRNFGGFKSYRLLRPA-K------GTTYKIYFGFADRHAYEDFKQSDAFNDH 138 (167)
T ss_dssp EEEEEEECCCTTT-HHHHHHHHHTSCGGGGGSTTEEEEEEEEES-S------SSCEEEEEEESSHHHHHHHHHSHHHHTT
T ss_pred EEEEEEEEcCCCh-HHHHHHHHHhhhccccCCCCcEEEEEeecC-C------CCcEEEEEEECCHHHHHHHhcCHHHHHH
Confidence 4444445554442 56666666422 2469999999998876 2 1267888999999999999999877664
No 50
>2cvi_A 75AA long hypothetical regulatory protein ASNC; structural genomics, unknown function; 1.50A {Pyrococcus horikoshii} PDB: 2z4p_A 2e1a_A
Probab=89.48 E-value=2 Score=24.93 Aligned_cols=57 Identities=9% Similarity=0.159 Sum_probs=40.1
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhc
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
|+.=+|..+++++ ..+++.+.+. ++|+|..+.. .++.||+.+.+.+.|.++|+.+..
T Consensus 1 mv~A~v~v~~~~~-~~~~~~~~l~----~~peV~e~~~---------vtG~~D~ll~v~~~d~~~l~~~i~ 57 (83)
T 2cvi_A 1 MVTAFILMVTAAG-KEREVMEKLL----AMPEVKEAYV---------VYGEYDLIVKVETDTLKDLDQFIT 57 (83)
T ss_dssp CEEEEEEEEECTT-CHHHHHHHHH----TSTTEEEEEE---------CBSSCSEEEEEEESSHHHHHHHHH
T ss_pred CEEEEEEEEEcCC-CHHHHHHHHh----CCCCeeEEEE---------EcccCCEEEEEEECCHHHHHHHHH
Confidence 4555677777664 3455554443 4788887721 347899999999999999988764
No 51
>2djw_A Probable transcriptional regulator, ASNC family; structural genomics, thermus thermophilus HB8, NPPSFA; 2.40A {Thermus thermophilus}
Probab=89.35 E-value=2.2 Score=25.21 Aligned_cols=57 Identities=11% Similarity=0.204 Sum_probs=40.4
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhc
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
|+.=+|..++++. ..+++.+ .|. ++|+|..+.. .++.||+.+.+.+.|.++++.+..
T Consensus 1 mv~A~v~v~~~~~-~~~~~~~---~l~-~~peV~~~~~---------vtG~~D~ll~v~~~d~~~l~~~l~ 57 (92)
T 2djw_A 1 MITAFVLIRPRGN-RVQALGE---AIA-ELPQVAEVYS---------VTGPYDLVALVRLKDVEELDDVVT 57 (92)
T ss_dssp CEEEEEEEEECGG-GHHHHHH---HHT-TSTTEEEEEE---------ESSSSSEEEEEEESSGGGHHHHCC
T ss_pred CEEEEEEEEEcCC-CHHHHHH---HHh-cCCCeEEEEE---------eecCCCEEEEEEECCHHHHHHHHH
Confidence 4556677787654 2444444 333 4788987721 347899999999999999999864
No 52
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=88.11 E-value=2.2 Score=26.22 Aligned_cols=42 Identities=21% Similarity=0.311 Sum_probs=35.8
Q ss_pred CCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 9 MGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
-.|.+..|...+|+++. .+++..++..| + +.+|.+++.|+-.
T Consensus 13 ~~~~~~~V~V~lKpgVlDPqG~aV~~aL~~L-G-~~~V~~VR~GK~~ 57 (94)
T 1vq3_A 13 LPLFKFAIDVQYRSNVRDPRGETIERVLREE-K-GLPVKKLRLGKSI 57 (94)
T ss_dssp CCEEEEEEEEEECTTSCCHHHHHHHHHHHHT-T-CCCEEEEEEEEEE
T ss_pred cceEEEEEEEEECCCCcCcHHHHHHHHHHHc-C-CCccceeeeeeEE
Confidence 46888899999999987 57888888887 3 8899999999866
No 53
>2zbc_A 83AA long hypothetical transcriptional regulator; SARD; 1.90A {Sulfolobus tokodaii}
Probab=85.04 E-value=3.7 Score=23.36 Aligned_cols=56 Identities=9% Similarity=0.207 Sum_probs=38.9
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
|+.=+|..+++++ ..+++.+.+. ++|+|..+.. .+++||+.+.+.+.|.++++.+.
T Consensus 1 mv~a~v~v~~~~~-~~~~~~~~l~----~~peV~~~~~---------vtG~~d~l~~v~~~d~~~l~~~~ 56 (83)
T 2zbc_A 1 MASAIVLINTDAG-GEDEVFERLK----SMSEVTEVHV---------VYGVYDIVVKVEADSMDKLKDFV 56 (83)
T ss_dssp -CEEEEEEEESTT-CHHHHHHHHT----TCTTEEEEEE---------CSSSCSEEEEEECSSHHHHHHHH
T ss_pred CeEEEEEEEEcCC-CHHHHHHHHh----CCCCeEEEEE---------EeccCCEEEEEEECCHHHHHHHH
Confidence 4555677788664 3455544443 4788887721 24789999999999999998765
No 54
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=81.88 E-value=4.9 Score=23.86 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=31.9
Q ss_pred CcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 10 GEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
+|....|...+|++.. .+.+...+..| + + ++.+++.|+-.
T Consensus 1 mm~~~~V~V~lK~gVlDpqG~av~~al~~L-G-~-~v~~VR~gK~~ 43 (85)
T 1gtd_A 1 MKFMVEVRIRLKKGMLNPEAATIERALALL-G-Y-EVEDTDTTDVI 43 (85)
T ss_dssp -CEEEEEEEEECTTSCCHHHHHHHHHHHHH-T-C-CCEEEEEEEEE
T ss_pred CCeEEEEEEEECCCCcCcHHHHHHHHHHHc-C-C-ChheEEEEEEE
Confidence 4677888899999987 56788888776 4 6 99999999866
No 55
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=81.40 E-value=4.6 Score=23.94 Aligned_cols=41 Identities=17% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCcEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 9 MGEFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 9 ~~mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
|+|..+.|...+|++.. .+.+...+..| + ++ +.+++.|+-.
T Consensus 1 m~m~~~~V~V~lK~gVlDpqG~av~~al~~L-G-~~-v~~VR~gK~~ 44 (84)
T 2dgb_A 1 MPRYQATLLIELKKGILDPQGRAVEGVLKDL-G-HP-VEEVRVGKVL 44 (84)
T ss_dssp -CEEEEEEEEEECTTSCCHHHHHHHHHHHHT-T-CC-CSEEEEEEEE
T ss_pred CCceEEEEEEEECCCCcChHHHHHHHHHHHC-C-CC-hhhEEEEEEE
Confidence 45788899999999987 56777777776 3 66 8888888866
No 56
>2zw2_A Putative uncharacterized protein STS178; purine metabolism, ligase; 1.55A {Sulfolobus tokodaii}
Probab=80.17 E-value=5.8 Score=23.97 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=32.3
Q ss_pred cEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 11 EFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 11 mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
|....|...+|+++. .+.+...+..| + +.+|.+++.|+-.
T Consensus 5 m~~~~V~V~lK~gVlDPqG~av~~al~~L-G-~~~V~~VR~gK~~ 47 (92)
T 2zw2_A 5 LYRVELIITNKEGVRDPEGETIQRYVVSR-F-SDKIIETRAGKYL 47 (92)
T ss_dssp EEEEEEEEEECTTSCCHHHHHHHHHTHHH-H-CTTEEEEEEEEEE
T ss_pred cEEEEEEEEECCCCcCcHHHHHHHHHHHc-C-CCChhheEEEEEE
Confidence 678899999999987 46677777666 3 8889999999866
No 57
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=78.09 E-value=12 Score=24.38 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=39.2
Q ss_pred EEEEEEEEecCCCC--HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhc
Q 033664 12 FKHLVIVKFKEGVV--VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 12 i~HiVlfk~k~~~~--~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
+.=+|.+++++... .+++.+.+. .+|+|..+.. . ++.||+.+.+.+.|.++++.+..
T Consensus 63 ~~a~v~v~v~~~~~~~~~~~~~~l~----~~peV~~~~~---v------tG~~D~~l~v~~~d~~~l~~~l~ 121 (162)
T 3i4p_A 63 VTVFVSIRTASHSIEWLKRFSEVVS----EFPEVVEFYR---M------SGDVDYLLRVVVPDIAAYDAFYK 121 (162)
T ss_dssp EEEEEEEECCSCCHHHHHHHHHHHH----HCTTEEEEEE---C------CSSCSEEEEEEESSHHHHHHHHH
T ss_pred EEEEEEEEEcCCChHHHHHHHHHHh----cCCCEEEeee---c------CCCCCEEEEEEECCHHHHHHHHH
Confidence 45566777766532 444544443 3788887743 2 36799999999999999987654
No 58
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=76.37 E-value=12 Score=23.78 Aligned_cols=56 Identities=5% Similarity=0.062 Sum_probs=39.4
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 12 FKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 12 i~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
+.-+|.++++++...+++.+.+. ++|+|..+.. .++.||+.+.+.+.|.++++.+.
T Consensus 68 ~~a~v~v~~~~~~~~~~~~~~l~----~~peV~~~~~---------vtG~~d~~~~v~~~d~~~l~~~l 123 (152)
T 2cg4_A 68 VGCFIGIILKSAKDYPSALAKLE----SLDEVTEAYY---------TTGHYSIFIKVMCRSIDALQHVL 123 (152)
T ss_dssp EEEEEEEEESSGGGHHHHHHHHH----TCTTEEEEEE---------ESSSCSEEEEEEESCHHHHHHHH
T ss_pred EEEEEEEEECCCCCHHHHHHHHh----CCcCeEEEEE---------EecccCEEEEEEECCHHHHHHHH
Confidence 44566667766534555555544 3788888742 24789999999999999998865
No 59
>1t4a_A PURS; tetramer, complex formyl glycinamide synthetase, FGAR, structural protein; 2.00A {Bacillus subtilis} SCOP: d.284.1.1 PDB: 1twj_A
Probab=71.31 E-value=13 Score=21.86 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=31.6
Q ss_pred cEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 11 EFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 11 mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
|+...|...+|++.. .+.+...+..| + +.++.+++.|+-.
T Consensus 1 ~~~~~V~V~lK~gVlDpqG~av~~al~~L-G-~~~v~~VR~gK~~ 43 (84)
T 1t4a_A 1 MYKVKVYVSLKESVLDPQGSAVQHALHSM-T-YNEVQDVRIGKYM 43 (84)
T ss_dssp CEEEEEEEEECTTSCCHHHHHHHHHHHHT-T-CTTEEEEEEEEEE
T ss_pred CeEEEEEEEECCCCcCcHHHHHHHHHHHc-C-CCChhheEEEEEE
Confidence 456778889999987 46777777776 3 8889999999876
No 60
>1tuw_A Tetracenomycin polyketide synthesis protein TCMI; dimeric ??? ferredoxin-like fold tetracenomycin C biosynthes unknown function; 1.90A {Streptomyces glaucescens} SCOP: d.58.4.8
Probab=68.85 E-value=2.6 Score=26.64 Aligned_cols=81 Identities=11% Similarity=0.131 Sum_probs=51.4
Q ss_pred cEEEEEEEEecCCCC--HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHH
Q 033664 11 EFKHLVIVKFKEGVV--VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEF 88 (114)
Q Consensus 11 mi~HiVlfk~k~~~~--~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~ 88 (114)
|-+-++..+.+++.. +.++-....+ +.+|+..++ .++.+-+ -.+=|-|.+..+=+..+++.....||.-+++
T Consensus 2 M~r~lIVaRm~pg~~~~VA~iFae~D~--telP~~~Gv-~rR~LF~---~~dlY~HLie~d~d~~~~i~~~r~~P~f~~i 75 (109)
T 1tuw_A 2 AYRALMVLRMDPADAEHVAAAFAEHDT--TELPLEIGV-RRRVLFR---FHDLYMHLIEADDDIMERLYQARSHPLFQEV 75 (109)
T ss_dssp CEEEEEEEEECGGGHHHHHHHHHHHTT--SSHHHHHTC-CEEEEEE---ETTEEEEEEEESSCCHHHHHHTTSCGGGHHH
T ss_pred CceEEEEEeeCCCCHHHHHHHHHhcCC--CcCchhcCc-eeeEEEE---eCCEEEEEEeccCCchHHHHHHhcCcHHHHH
Confidence 556677788888754 4555554443 346665554 3444422 1233445444443455668888999999999
Q ss_pred HHHHHhhhh
Q 033664 89 SATFSAAIE 97 (114)
Q Consensus 89 ~~~~~p~~~ 97 (114)
.++|+|++.
T Consensus 76 ~~~L~~yi~ 84 (109)
T 1tuw_A 76 NERVGQYLT 84 (109)
T ss_dssp HHHHHTTEE
T ss_pred HHHHHHhcC
Confidence 999999975
No 61
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=66.38 E-value=23 Score=22.73 Aligned_cols=56 Identities=13% Similarity=0.138 Sum_probs=38.0
Q ss_pred EEEEEEEEecCCCC-HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 12 FKHLVIVKFKEGVV-VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 12 i~HiVlfk~k~~~~-~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
+.=+|.+++++... .+++.+ .|. .+|+|..+.. . ++.||+.+.+.+.|.++++.+.
T Consensus 70 ~~a~v~v~~~~~~~~~~~~~~---~l~-~~peV~~~~~---v------tG~~d~~~~v~~~d~~~l~~~l 126 (162)
T 2p5v_A 70 LQAFIRVSIRKAKDAREDFAA---SVR-KWPEVLSCFA---L------TGETDYLLQAFFTDMNAFSHFV 126 (162)
T ss_dssp EEEEEEEEECSSTTHHHHHHH---HHT-TCTTEEEEEE---E------SSSCSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEEcCCchHHHHHHH---HHh-cChhhhEeee---e------cCCCCEEEEEEECCHHHHHHHH
Confidence 34455667766541 344444 443 4788887743 2 3679999999999999998865
No 62
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=62.94 E-value=26 Score=22.17 Aligned_cols=55 Identities=11% Similarity=0.193 Sum_probs=38.0
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 12 FKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 12 i~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
+.=+|.+++++ ...+++.+.+.+ +|+|..+.. . +++||+.+.+.+.|.++++.+.
T Consensus 67 ~~a~v~v~~~~-~~~~~~~~~l~~----~p~V~~~~~---~------tG~~d~~~~v~~~d~~~l~~~~ 121 (151)
T 2cyy_A 67 MLAFILVKVKA-GKYSEVASNLAK----YPEIVEVYE---T------TGDYDMVVKIRTKNSEELNNFL 121 (151)
T ss_dssp EEEEEEEEECT-TCHHHHHHHHHT----CTTEEEEEE---C------SSSSSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECc-ccHHHHHHHHhc----CCCeeEeeE---e------cCCCCEEEEEEECCHHHHHHHH
Confidence 33456667763 245666655544 677887632 2 3689999999999999998765
No 63
>2cb2_A Sulfur oxygenase reductase; oxidoreductase, mononuclear non-heme iron, biogeochemical sulfur cycle, extremophIle, thermophilic, acidophilic; 1.7A {Acidianus ambivalens} SCOP: d.58.4.17 PDB: 2yav_A 2yaw_A 2yax_A* 2yax_B* 3bxv_A
Probab=62.65 E-value=44 Score=24.63 Aligned_cols=78 Identities=8% Similarity=0.015 Sum_probs=59.0
Q ss_pred EecCCCC---HHHHHHHHHHchhcCCcEeEEEeecccC----------------------------------ChhhhcCc
Q 033664 19 KFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDVE----------------------------------GQEMLRQG 61 (114)
Q Consensus 19 k~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~~----------------------------------s~~~~~~~ 61 (114)
++|++.. .+.+.+.|..|+ ..||.+.+.+=+... -++.....
T Consensus 167 ~Vk~G~EKeFEe~~~~tLe~lk-~apGflG~MIlKeIGvs~iGSfql~~~g~~~~l~t~g~~pP~~~~~~~~~~e~~~~P 245 (318)
T 2cb2_A 167 SVIPGKEKQFEDAIVRTLEMLK-KAPGFLGAMVLKEIGVSGIGSMQFGAKGFHQVLENPGSLEPDPNNVMYSVPEAKNTP 245 (318)
T ss_dssp EECTTCHHHHHHHHHHHHHHHT-TSTTEEEEEEEEEEEECTTTTTCCCHHHHHHHHTCCSSSCCCGGGCCSCTGGGCCBS
T ss_pred eeccchHHHHHHHHHHHHHHHh-cCCCcchhHHHHHhccccccccccCchHHHHHhhhccCCCCCcccccccccccCCCC
Confidence 5677776 567888888888 799998876655330 11223456
Q ss_pred ccEEEEEEECCHHh----HHHhhcChhHHHHHHHHHhhhh
Q 033664 62 FTHAFLMTFNKKED----YTTFASHPSHVEFSATFSAAIE 97 (114)
Q Consensus 62 ~~~~l~~~F~s~~a----l~~Y~~hP~H~~~~~~~~p~~~ 97 (114)
=.+.+.++.+|.++ +..+..+|+.+++.+..+..++
T Consensus 246 ~eYlVH~EW~d~esa~fGf~rv~vs~e~R~iHd~gl~tL~ 285 (318)
T 2cb2_A 246 QQYIVHVEWANTDALMFGMGRVLLYPELRQVHDEVLDTLV 285 (318)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSHHHHHHHHHHHTTEE
T ss_pred cceEEEEEecCchhhhhhHHHhhcCHHHHHHHHHHhhhhc
Confidence 68999999999999 9999999999999987655543
No 64
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=62.44 E-value=11 Score=22.16 Aligned_cols=40 Identities=28% Similarity=0.411 Sum_probs=29.3
Q ss_pred cEEEEEEEEecCCCC---HHHHHHHHHHchhcCCcEeEEEeeccc
Q 033664 11 EFKHLVIVKFKEGVV---VEDIVKGMKKLVSEIDAVKSFEWGQDV 52 (114)
Q Consensus 11 mi~HiVlfk~k~~~~---~~~~~~~l~~L~~~iP~v~~~~~G~~~ 52 (114)
|+...|...+|++.. .+.+...+..| + +.++.+++.|+-.
T Consensus 1 ~~~~~V~V~lK~gvlDpqG~av~~al~~l-G-~~~v~~Vr~gk~~ 43 (83)
T 2yx5_A 1 MYKATVIIKLKKGVLNPEGRTIQRALNFL-G-FNNVKEVQTYKMI 43 (83)
T ss_dssp CEEEEEEEEECTTCCCHHHHHHHHHHHHT-T-CTTCCCCCCCEEE
T ss_pred CeEEEEEEEECCCCcCcHHHHHHHHHHHc-C-CCChhhEEEEEEE
Confidence 456778889999987 56777888866 2 6677777777654
No 65
>2hiq_A Hypothetical protein YDHR; hypothetical protein JW1657, structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: d.58.4.12 PDB: 1wd6_A
Probab=60.96 E-value=28 Score=21.94 Aligned_cols=66 Identities=8% Similarity=0.085 Sum_probs=46.6
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHchh---cCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcCh
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKKLVS---EIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHP 83 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~L~~---~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP 83 (114)
++..-+|-|++..+. .+++.+.+..|.. +.||+..=.|..|. .. + +.+=+=-|+|+++.++|.+-+
T Consensus 8 m~~llqV~F~~~gP~-geE~~~~f~~lA~si~~epGLiwKiWte~e-~t-~-----~aGGiYLFes~~~AeaY~~~h 76 (113)
T 2hiq_A 8 AATLLQLHFAFNGPF-GDAMAEQLKPLAESINQEPGFLWKVWTESE-KN-H-----EAGGIYLFTDEKSALAYLEKH 76 (113)
T ss_dssp -CEEEEEEEECCCCC-HHHHHHHSHHHHHHHTTSTTEEEEEEEEET-TT-T-----EEEEEEEESSHHHHHHHHHHH
T ss_pred hhEeEEEEecCCCch-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcC-CC-C-----eeeEEEEeCCHHHHHHHHHHH
Confidence 455677888887775 7777777777754 48999876677766 21 1 333345699999999999874
No 66
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=58.44 E-value=31 Score=21.63 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=37.7
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 12 FKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 12 i~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
+.-+|.+++++.. .+++.+.+. .+|+|..+.. .++.||+.+.+.+.|.++++.+.
T Consensus 65 ~~a~v~v~~~~~~-~~~~~~~l~----~~p~V~~~~~---------~tG~~d~~~~v~~~~~~~l~~~~ 119 (144)
T 2cfx_A 65 VSCIVEATVKNAD-YERFKSYIQ----TLPNIEFCYR---------IAGAACYMLKINAESLEAVEDFI 119 (144)
T ss_dssp EEEEEEEEEGGGC-HHHHHHHHH----TCTTEEEEEE---------EESSSSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECccc-HHHHHHHHh----cChhhheeee---------eeCCCCEEEEEEECCHHHHHHHH
Confidence 4455666776543 455544443 4788887632 23679999999999999999875
No 67
>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer, structural genomics, ontario centre for structural proteomics, OCSP; NMR {Escherichia coli} SCOP: d.58.4.12
Probab=54.72 E-value=39 Score=21.62 Aligned_cols=66 Identities=8% Similarity=0.069 Sum_probs=45.4
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHchh---cCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcCh
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKKLVS---EIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHP 83 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~L~~---~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP 83 (114)
++..-+|=|++.-+. .+++.+.+..|.. +.||+..=.|..|. + +=+.+=+=-|+|+++.++|.+-+
T Consensus 23 m~~lLqVdF~~~gP~-geE~~~~f~~lA~si~~epGLIwKiwtene-~------~~eAGGIYLFe~~aaAEaYl~~h 91 (123)
T 2asy_A 23 MATLLQLHFAFNGPF-GDAMAEQLKPLAESINQEPGFLWKVWTESE-K------NHEAGGIYLFTDEKSALAYLEKH 91 (123)
T ss_dssp CCEEEEEEEESSSSC-SHHHHTTHHHHHHHHTCCCCBSCCCCBCBT-T------TTEEEEEEEESCHHHHHHHHHHH
T ss_pred eeEeEEEeecCCCch-HHHHHHHHHHHHHHHhcCCCcEEEEEEEcC-C------CCccceEEEeCCHHHHHHHHHHH
Confidence 455677888887776 6777777777755 47777754455655 2 11334455699999999999875
No 68
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=52.62 E-value=46 Score=21.78 Aligned_cols=55 Identities=13% Similarity=0.245 Sum_probs=38.8
Q ss_pred EEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 12 FKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 12 i~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
+.-+|.++++++ ..+++.+.+.+ +|+|..+.. .+++||+.+.+.+.|.++++.+.
T Consensus 87 ~~a~v~v~~~~~-~~~~v~~~l~~----~peV~~~~~---------vtG~~d~l~~v~~~d~~~l~~~l 141 (171)
T 2e1c_A 87 MLAFILVKVKAG-KYSEVASNLAK----YPEIVEVYE---------TTGDYDMVVKIRTKNSEELNNFL 141 (171)
T ss_dssp EEEEEEEEECTT-CHHHHHHHHHT----STTEEEEEE---------CSSSSSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEECcc-hHHHHHHHHhc----CcCeEEEEE---------eeCCCCEEEEEEECCHHHHHHHH
Confidence 445667777632 45666655544 677887632 23789999999999999998765
No 69
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=50.50 E-value=50 Score=21.56 Aligned_cols=57 Identities=16% Similarity=0.099 Sum_probs=37.2
Q ss_pred EEEEEEEecCCC----CHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 13 KHLVIVKFKEGV----VVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 13 ~HiVlfk~k~~~----~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
.-+|.+++++.. +.+.+.+....|. .+|+|..+. . ++.||+.+.+...|.++++.+.
T Consensus 77 ~a~v~v~~~~~~~~~f~~~~~~~~~~~l~-~~peV~~~~----v------tG~~dll~~v~~~d~~~l~~~l 137 (171)
T 2ia0_A 77 LALIVLEVGKPVIEDFLERYISYISSTLS-ALPGVLFVA----K------SGEDKIIALVGKNNKDELVKFI 137 (171)
T ss_dssp EEEEEEEESCC--CHHHHHHHHHHHHHHH-TSTTEEEEE----E------ETTTEEEEEEEESSTTHHHHHH
T ss_pred eEEEEEEECCccccccchhHHHHHHHHHH-CCCCeEEEE----E------cCCCCEEEEEEECCHHHHHHHH
Confidence 345556776651 1223333344443 488899885 3 1579999999999999998765
No 70
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=49.21 E-value=46 Score=20.80 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=30.7
Q ss_pred HHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 26 VEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 26 ~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
.+++.+.+. .+|+|..+.. . ++.||+.+.+...|.++++.+.
T Consensus 78 ~~~~~~~l~----~~p~V~~~~~---~------tG~~d~~~~v~~~d~~~l~~~l 119 (150)
T 2pn6_A 78 HVELGNKLA----QIPGVWGVYF---V------LGDNDFIVMARYKTREEFMEKF 119 (150)
T ss_dssp HHHHHHHHH----TSTTEEEEEE---C------SSSCSEEEEEEESSHHHHHHHT
T ss_pred HHHHHHHHh----cCchhhhhhh---h------cCcCCEEEEEEECCHHHHHHHH
Confidence 455554444 3777877642 2 3679999999999999998865
No 71
>1vqs_A Hypothetical protein AGR_L_1239; ferredoxin-like fold, structural genomics, joint center for structural genomics, JCSG; HET: MSE SO4; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.4.13 PDB: 2ap6_A
Probab=42.37 E-value=58 Score=19.96 Aligned_cols=81 Identities=12% Similarity=0.124 Sum_probs=48.6
Q ss_pred CcEEEEEEEEecCCCC---HHHHHH-HHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh----c
Q 033664 10 GEFKHLVIVKFKEGVV---VEDIVK-GMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA----S 81 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~---~~~~~~-~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~----~ 81 (114)
-|+.=+..|.+||+.- .+.+.+ .+.... +. |..-+-+..... + ..-.+..+..|+|.++++++. .
T Consensus 12 ~~~yElR~Y~i~Pg~~~~~~~~~~~~~i~~~~-~~-g~~~vG~~~~~~---G--~ln~v~~Lw~y~sl~~r~~~r~a~~~ 84 (116)
T 1vqs_A 12 HMFYEIRTYRLKNGAIPAYLKVVEDEGIEIQK-SH-LGELVGYFFSEI---G--PINEIVHIWAFSSLDDRAERRARLMA 84 (116)
T ss_dssp CCEEEEEEEEESTTCHHHHHHHHHHTHHHHHH-HH-HCCEEEEEEEEE---S--SSSEEEEEEEESCHHHHHHHHHHHHH
T ss_pred eeEEEEEEEEEcCCCHHHHHHHHHHhhhHHHH-Hh-CCceEEEEEccc---C--CCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 3566688999999855 233334 332222 22 222222222221 1 123688999999999998766 5
Q ss_pred ChhHHHHHHHHHhhhh
Q 033664 82 HPSHVEFSATFSAAIE 97 (114)
Q Consensus 82 hP~H~~~~~~~~p~~~ 97 (114)
+|.=+++.....|++.
T Consensus 85 dp~W~~~~~~~~~lI~ 100 (116)
T 1vqs_A 85 DPRWLSFLPKIRDLIE 100 (116)
T ss_dssp CHHHHHHTHHHHTTEE
T ss_pred CCchHHHHHHhhhhee
Confidence 7888887766666654
No 72
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=40.64 E-value=41 Score=19.80 Aligned_cols=61 Identities=10% Similarity=0.072 Sum_probs=40.1
Q ss_pred EEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhc
Q 033664 14 HLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 14 HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
-|.+-.+...++.+++.+.+..+ +.+.+|.++.+-++. . ++..|| -.++|.+.++.+.-..
T Consensus 13 ~l~V~nLp~~~te~~l~~~F~~~-g~~~~v~~v~i~~~~-~--g~~~G~---afV~F~~~~~a~~Al~ 73 (107)
T 2lmi_A 13 LIRAQGLPWSCTMEDVLNFFSDC-RIRNGENGIHFLLNR-D--GKRRGD---ALIEMESEQDVQKALE 73 (107)
T ss_dssp EEEEECCCSSCCSHHHHHHTTTS-CBTTTTTTEECCCCT-T--STTCSE---EEEEBSSHHHHHHHHT
T ss_pred EEEEeCCCCCCCHHHHHHHHHhc-CCcCCcceEEEEECC-C--CCEeeE---EEEEECCHHHHHHHHH
Confidence 34445677777788888877765 334556777766654 2 556665 3468999988776544
No 73
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=37.74 E-value=43 Score=19.62 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=42.0
Q ss_pred CCccccccCCcEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHH
Q 033664 1 MGEGEEAAMGEFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTT 78 (114)
Q Consensus 1 ~~~~~~~~~~mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~ 78 (114)
||-.++.+|.. |.+=.+.+.++.+++.+.+...- .+ .+.++.+-++-.+ +.++|| +| ++|.+.++-+.
T Consensus 1 mg~~~~~~m~t---lfV~nL~~~~tee~L~~~F~~~G-~i-~v~~v~i~~d~~t--g~srG~--aF-V~f~~~~~A~~ 68 (95)
T 2lkz_A 1 MGHHHHHHMDT---IILRNIAPHTVVDSIMTALSPYA-SL-AVNNIRLIKDKQT--QQNRGF--AF-VQLSSAMDASQ 68 (95)
T ss_dssp CCCCSSCCCCE---EEEESCCTTCCHHHHHHHSTTTC-CC-CGGGEECCCCSSS--SSCSSE--EE-EECSSSHHHHH
T ss_pred CCcccCCccCE---EEEeCCCCcCCHHHHHHHHHhhC-Cc-cEEEEEEEecCCC--CCCceE--eE-EEECCHHHHHH
Confidence 67777766554 45557888888999988887652 22 2455666655411 345665 33 57887765443
No 74
>2qlw_A RHAU; mutarotase, isomerase; HET: MSE; 1.60A {Rhizobium leguminosarum BV} PDB: 2qlx_A*
Probab=31.74 E-value=1.1e+02 Score=19.99 Aligned_cols=80 Identities=18% Similarity=0.170 Sum_probs=53.9
Q ss_pred cCCcEEEEEEEEecCCCCHHHHHH--------HHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHh
Q 033664 8 AMGEFKHLVIVKFKEGVVVEDIVK--------GMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTF 79 (114)
Q Consensus 8 ~~~mi~HiVlfk~k~~~~~~~~~~--------~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y 79 (114)
+++|.|.....++||+.- ++.++ .+..|+ --||.++++=.+.. + -.+..+++-++.++.++-
T Consensus 38 ~~~MkR~af~m~Lkp~~~-eEYk~~Ha~VWPEv~~~Lk--~aGI~nYSIfl~~~------~-~~LF~~~E~~dda~~a~m 107 (144)
T 2qlw_A 38 DMTLEKHAFKMQLNPGME-AEYRKRHDEIWPELVDLLH--QSGASDYSIHLDRE------T-NTLFGVLTRPKDHTMASL 107 (144)
T ss_dssp CCCEEEEEEEEEBCTTCH-HHHHHHHHTCCHHHHHHHH--HHTCEEEEEEEETT------T-TEEEEEEEEETTCCGGGG
T ss_pred CccceEEEEEEEcCchHH-HHHHHHHHhCCHHHHHHHH--HcCCeEEEEEEECC------C-CeEEEEEEEcCHHHHHhc
Confidence 456788888899988764 22222 233333 24799998877531 1 145555666777777778
Q ss_pred hcChhHHHHHHHHHhhhh
Q 033664 80 ASHPSHVEFSATFSAAIE 97 (114)
Q Consensus 80 ~~hP~H~~~~~~~~p~~~ 97 (114)
..+|.=++.-+...++.+
T Consensus 108 a~~pv~qrWwa~M~~~~~ 125 (144)
T 2qlw_A 108 PDHPVMKKWWAHMADIMA 125 (144)
T ss_dssp GGCHHHHHHHHHHGGGBC
T ss_pred cCChHHHHHHHHHHHHhc
Confidence 889999999988887754
No 75
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=31.26 E-value=58 Score=19.57 Aligned_cols=60 Identities=10% Similarity=0.074 Sum_probs=40.6
Q ss_pred EEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhc
Q 033664 15 LVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFAS 81 (114)
Q Consensus 15 iVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~ 81 (114)
|.+-.|...++.+++.+.+..+ +.+++|..+.+-++. . ++..|| -.++|.+.++.+.-..
T Consensus 20 l~V~nLp~~~te~~l~~~F~~~-G~~~~v~~v~i~~~~-~--g~~~G~---afV~F~~~~~a~~Al~ 79 (118)
T 2db1_A 20 VKLRGLPWSCSIEDVQNFLSDC-TIHDGVAGVHFIYTR-E--GRQSGE---AFVELESEDDVKLALK 79 (118)
T ss_dssp EEEESCCTTCCHHHHHHHTTTS-CBTTGGGGEEEEECS-S--SCEEEE---EEEEBSSHHHHHHHGG
T ss_pred EEEeCCCCCCCHHHHHHHHHHc-CCccCceeEEEEECC-C--CCCCeE---EEEEECCHHHHHHHHh
Confidence 4445677777788888888775 456667777776655 2 444554 4568999988776554
No 76
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=29.95 E-value=97 Score=18.89 Aligned_cols=56 Identities=14% Similarity=0.098 Sum_probs=37.7
Q ss_pred cEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 11 EFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 11 mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
.+.-++.+++++ ...+++.+.+.. +|+|..+.. .++.||+.+.+.+.|.++++.+.
T Consensus 63 ~~~~~v~~~~~~-~~~~~~~~~l~~----~~~v~~~~~---------~~G~~d~~~~v~~~d~~~l~~~~ 118 (141)
T 1i1g_A 63 SLVTITGVDTKP-EKLFEVAEKLKE----YDFVKELYL---------SSGDHMIMAVIWAKDGEDLAEII 118 (141)
T ss_dssp CEEEEEEEEECG-GGHHHHHHHHHH----STTEEEECC---------CSSSSSEEEEEEESSHHHHHHHH
T ss_pred cEEEEEEEEECc-hhHHHHHHHHhc----CCCeEEEEE---------ecCCCCEEEEEEECCHHHHHHHH
Confidence 345566667754 234555544443 677877621 24789999999999999998775
No 77
>3gn6_A CT0912, orfan protein with A ferredoxin-like DOMA; orfan protein from chlorobium tepidum W ferredoxin-like domain repeat; HET: 2PE; 1.80A {Chlorobium tepidum tls}
Probab=29.61 E-value=70 Score=23.37 Aligned_cols=85 Identities=6% Similarity=0.060 Sum_probs=53.5
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHch---hcCCcEeEEEeec---------ccC--------C-----hhhhcCcccE
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKKLV---SEIDAVKSFEWGQ---------DVE--------G-----QEMLRQGFTH 64 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~L~---~~iP~v~~~~~G~---------~~~--------s-----~~~~~~~~~~ 64 (114)
+.+.-+.=|+.-+. ..+.+...+.++. ...||.++++.-. |.+ + .+..+..|.+
T Consensus 38 gpvTlY~EfrV~~~-~~~~ll~~i~~~~a~l~~~~GflsltLKqMvGDSTMVkNYP~~yKGVL~tAY~daa~~gt~P~Fy 116 (321)
T 3gn6_A 38 QALTLYAEMRVVPA-HHDAFLAAIDTVSAKLRVLPGFLSLALKQMSGDSTMVKNYPETYKGVLATAYLDGVAAGTQPYFY 116 (321)
T ss_dssp SCEEEEEEEEECHH-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEEECSGGGTCCGGGTTTTTTHHHHHHHHTSSCEEE
T ss_pred CceEEEEEEecccc-cHHHHHHHHHHhHHHhhcCccHHHHHHHHhcCchhhhhcCcHHHHHHHHHHHHhHHhcCCcchhh
Confidence 34444445555222 1456666655552 3589998886532 110 0 0234688999
Q ss_pred EEEEEECCHHhHHHhhcChhHHHHHHHHHhhhhc
Q 033664 65 AFLMTFNKKEDYTTFASHPSHVEFSATFSAAIEK 98 (114)
Q Consensus 65 ~l~~~F~s~~al~~Y~~hP~H~~~~~~~~p~~~~ 98 (114)
.|.++|+|.++..+ .-.|..|...+.|++-.
T Consensus 117 ~LfvRFad~~~~~a---a~~~a~F~~~I~P~Lh~ 147 (321)
T 3gn6_A 117 NLFVRFADGRAARA---AGFEALFETHIHPLLHA 147 (321)
T ss_dssp EEEEEESSHHHHHH---TCHHHHHHHHTGGGCBC
T ss_pred hhhhhccccccchh---cchHHHHHHHhhHHhhh
Confidence 99999999999955 45567777788888754
No 78
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=29.61 E-value=66 Score=23.06 Aligned_cols=72 Identities=6% Similarity=-0.091 Sum_probs=41.0
Q ss_pred EEEEEec--CCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhhcChhHHHHHHHH
Q 033664 15 LVIVKFK--EGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFASHPSHVEFSATF 92 (114)
Q Consensus 15 iVlfk~k--~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~~hP~H~~~~~~~ 92 (114)
.++|.+. ++. .-.+.+.|..+...==-+..+ . |+.-+.+.|++.|+++|+.. .++.-++..+.+
T Consensus 188 sl~f~~~~~~~~-pGaL~~~L~~Fa~~gINLtkI-----E-SRP~~~~~~~Y~FfiD~e~~-------~d~~v~~aL~~L 253 (267)
T 2qmw_A 188 SLMFLITPMHDK-PGLLASVLNTFALFNINLSWI-----E-SRPLKTQLGMYRFFVQADSA-------ITTDIKKVIAIL 253 (267)
T ss_dssp EEEEEEEESSCC-TTHHHHHHHHHHTTTCCEEEE-----E-EEECSSSTTCEEEEEEESCC-------SCHHHHHHHHHH
T ss_pred EEEEEcCCCCCC-cChHHHHHHHHHHcCCCeeEE-----E-EeecCCCCccEEEEEEEecC-------CcHHHHHHHHHH
Confidence 5667772 222 345556666665321112333 2 33334577999999999833 346666677777
Q ss_pred HhhhhceE
Q 033664 93 SAAIEKIV 100 (114)
Q Consensus 93 ~p~~~~~~ 100 (114)
+..+..+-
T Consensus 254 ~~~~~~~k 261 (267)
T 2qmw_A 254 ETLDFKVE 261 (267)
T ss_dssp HHTTEEEE
T ss_pred HHhcCeEE
Confidence 77665443
No 79
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=28.95 E-value=51 Score=20.65 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=29.2
Q ss_pred HHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEE-CCHHhHHHhh
Q 033664 31 KGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTF-NKKEDYTTFA 80 (114)
Q Consensus 31 ~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F-~s~~al~~Y~ 80 (114)
+....|. .+|+|..+.. .++.||+.+.+.+ .|.++++.+.
T Consensus 84 ~~~~~l~-~~peV~~~~~---------vtG~~d~~~~v~~~~d~~~l~~~~ 124 (151)
T 2dbb_A 84 KVISEIS-DIEYVKSVEK---------GVGRYNIIVRLLLPKDIKDAENLI 124 (151)
T ss_dssp HHHHHHT-TCTTEEEEEE---------EESSCSEEEEEEEESSHHHHHHHH
T ss_pred HHHHHHH-cCCCeEEEeE---------ecCCCCEEEEEEEcCCHHHHHHHH
Confidence 3334443 4788887742 2478999999999 9999998765
No 80
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.60 E-value=93 Score=17.56 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=37.6
Q ss_pred CcEEEEEEEEecCCCCHHHHHHHHHHchhcCCcEe-EEEeecccCChhhhcCcccEEEEEEECCHHhHHHh
Q 033664 10 GEFKHLVIVKFKEGVVVEDIVKGMKKLVSEIDAVK-SFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTF 79 (114)
Q Consensus 10 ~mi~HiVlfk~k~~~~~~~~~~~l~~L~~~iP~v~-~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y 79 (114)
.+-+.|..-.+...++.+++.+.+... ..|. ++.+-++-.. +...+| -.++|.+.++-+.-
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~v~i~~~~~~--g~~~g~---afV~f~~~~~a~~A 68 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATM----GETVMSVKIIRNRLT--GIPAGY---CFVEFADLATAEKC 68 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHT----TCCCCEEEEEECSSS--CCEEEE---EEEECSCHHHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEEeecCCC--CCcCCE---EEEEeCCHHHHHHH
Confidence 334556666778888888888877764 2345 6666554311 234454 45789998876553
No 81
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=24.21 E-value=67 Score=20.06 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=34.3
Q ss_pred EEEEEEE-ecCCCCHHHHHHHHHHchhcCCcEeEEEeecccCChhhhcCcccEEEEEEECCHHhHHHhh
Q 033664 13 KHLVIVK-FKEGVVVEDIVKGMKKLVSEIDAVKSFEWGQDVEGQEMLRQGFTHAFLMTFNKKEDYTTFA 80 (114)
Q Consensus 13 ~HiVlfk-~k~~~~~~~~~~~l~~L~~~iP~v~~~~~G~~~~s~~~~~~~~~~~l~~~F~s~~al~~Y~ 80 (114)
.-+|.++ +++.. .+++.+.+. .+|+|..+.. .++.||+.+.+...|.++++.+.
T Consensus 68 ~a~v~~~~~~~~~-~~~~~~~l~----~~p~V~~~~~---------~~G~~d~~~~v~~~~~~~l~~~l 122 (150)
T 2w25_A 68 SAFVAITPLDPSQ-PDDAPARLE----HIEEVESCYS---------VAGEASYVLLVRVASARALEDLL 122 (150)
T ss_dssp EEEEEEEESCTTS-CCCHHHHHT----TCTTEEEEEE---------ESSSCSEEEEEEESSHHHHHHHH
T ss_pred EEEEEEEEcCCCC-HHHHHHHHh----cCcCeEEEEE---------eECCCCEEEEEEECCHHHHHHHH
Confidence 3444555 54432 234443333 4677766532 23679999999999999998876
No 82
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=20.61 E-value=86 Score=18.75 Aligned_cols=26 Identities=8% Similarity=0.184 Sum_probs=19.5
Q ss_pred CHHHHHHHHHHchhcCCcEeEEEeecc
Q 033664 25 VVEDIVKGMKKLVSEIDAVKSFEWGQD 51 (114)
Q Consensus 25 ~~~~~~~~l~~L~~~iP~v~~~~~G~~ 51 (114)
+.+++.+.+..+. .+|||++.+.--.
T Consensus 52 ~~~~l~~~i~~I~-~i~GVlst~lvy~ 77 (95)
T 2jsx_A 52 DSETLIQTIESVR-NVEGVLAVSLVYH 77 (95)
T ss_dssp SHHHHHHHHHHHT-TSTTEEEEEESSC
T ss_pred CHHHHHHHHHHHh-cCCCccEEeEEEE
Confidence 4677778888875 5999999776543
No 83
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=20.16 E-value=1.2e+02 Score=16.45 Aligned_cols=26 Identities=4% Similarity=0.106 Sum_probs=20.0
Q ss_pred CCHHhHHHhhcChhHHHHHHHHHhhh
Q 033664 71 NKKEDYTTFASHPSHVEFSATFSAAI 96 (114)
Q Consensus 71 ~s~~al~~Y~~hP~H~~~~~~~~p~~ 96 (114)
.+.+++..|+.+|.=.....++....
T Consensus 32 ~NP~~~~~~~~dP~v~~~~~~L~~~~ 57 (62)
T 2lnm_A 32 ENPMNIMKYQNDKEVMDVFNKISQLF 57 (62)
T ss_dssp TCGGGHHHHTTCHHHHHHHHHHHHHS
T ss_pred HCHHHHHHHHhChHHHHHHHHHHHHh
Confidence 56778888999998888887766554
Done!