BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033665
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OZ4|A Chain A, Structural Plasticity In Igsf Domain 4 Of Icam-1 Mediates
Cell Surface Dimerization
Length = 265
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 38 LTHQRFLRRNRGTYGPAIQA----GKETFPGHS----------TPIPQLYCCGDSTFP 81
L H+ R R YGP + G T+P +S P+P+L C D TFP
Sbjct: 169 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 226
>pdb|1P53|A Chain A, The Crystal Structure Of Icam-1 D3-D5 Fragment
pdb|1P53|B Chain B, The Crystal Structure Of Icam-1 D3-D5 Fragment
Length = 266
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 38 LTHQRFLRRNRGTYGPAIQA----GKETFPGHS----------TPIPQLYCCGDSTFP 81
L H+ R R YGP + G T+P +S P+P+L C D TFP
Sbjct: 170 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 227
>pdb|1Z7Z|I Chain I, Cryo-Em Structure Of Human Coxsackievirus A21 Complexed
With Five Domain Icam-1kilifi
Length = 450
Score = 29.3 bits (64), Expect = 0.53, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 34 VGTPLTHQRFLRRNRGTYGPAIQ----AGKETFPGHS----------TPIPQLYCCGDST 79
V L H+ R R YGP + G T+P +S P+P+L C D T
Sbjct: 350 VAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT 409
Query: 80 FP 81
FP
Sbjct: 410 FP 411
>pdb|4B6A|TT Chain t, Cryo-Em Structure Of The 60s Ribosomal Subunit In Complex
With Arx1 And Rei1
Length = 614
Score = 28.5 bits (62), Expect = 1.0, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 8/57 (14%)
Query: 61 TFPGHSTPIPQLYCCG-------DSTFPGIGVPAVAASGAIV-ANSLVSVSQHSELL 109
T PGH P+P+L +ST I +P IV +S VS + ELL
Sbjct: 488 TLPGHELPLPKLGVSAIKLKSLMNSTKESISLPVARECNTIVLCDSSVSTTDRPELL 544
>pdb|3CNK|A Chain A, Crystal Structure Of The Dimerization Domain Of Human
Filamin A
pdb|3CNK|B Chain B, Crystal Structure Of The Dimerization Domain Of Human
Filamin A
Length = 89
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 26 RDKCD---VKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPG 64
R C+ VK VG+ L +L +++G Y ++ G E PG
Sbjct: 40 RTPCEEILVKHVGSRLYSVSYLLKDKGEYTLVVKWGHEHIPG 81
>pdb|4DGK|A Chain A, Crystal Structure Of Phytoene Desaturase Crti From Pantoea
Ananatis
Length = 501
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 69 IPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101
I LY G T PG G+P V S A ++
Sbjct: 457 ITNLYLVGAGTHPGAGIPGVIGSAKATAGLMLE 489
>pdb|2EED|A Chain A, Solution Structure Of The 24th Filamin Domain From Human
Filamin-B
Length = 101
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 21 GPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPG 64
GP ++ +K VG + ++ + RG Y A++ G+E PG
Sbjct: 50 GPTTPCEEVSMKHVGNQQYNVTYVVKERGDYVLAVKWGEEHIPG 93
>pdb|3R5A|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|D Chain D, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|E Chain E, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5A|F Chain F, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
D-2-Aminopimelate
pdb|3R5B|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|D Chain D, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|E Chain E, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5B|F Chain F, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With
L-2-Aminopimelate
pdb|3R5C|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With Coa
And Succinate
pdb|3R5C|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With Coa
And Succinate
pdb|3R5C|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) In Complex With Coa
And Succinate
pdb|3R5D|A Chain A, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|B Chain B, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|C Chain C, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|D Chain D, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|E Chain E, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
pdb|3R5D|F Chain F, Pseudomonas Aeruginosa Dapd (Pa3666) Apoprotein
Length = 347
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 35 GTPLTHQRFLRRNRGTYGPAIQAGK 59
GT + H+ F+ N GT GP + G+
Sbjct: 202 GTTVMHEGFVNFNAGTEGPGMIEGR 226
>pdb|3KA7|A Chain A, Crystal Structure Of An Oxidoreductase From Methanosarcina
Mazei. Northeast Structural Genomics Consortium Target
Id Mar208
Length = 425
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 53 PAIQAGKETFPGHSTPIPQLYCCGD 77
P +A T PG+ TP LY GD
Sbjct: 375 PVNRAASGTDPGNETPFSGLYVVGD 399
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,538,011
Number of Sequences: 62578
Number of extensions: 140439
Number of successful extensions: 252
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 9
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)