BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033665
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q52QW3|CRTS1_ONCHC Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO1 PE=2 SV=1
Length = 587
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 62/102 (60%), Gaps = 7/102 (6%)
Query: 16 VERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGP---AIQAGKETFPGHSTPIPQL 72
+E+ L PG +D +K VGTP TH+RFL R+ GTYGP + G P ++T I L
Sbjct: 474 LEKKLFPGL-KDSVVLKEVGTPKTHRRFLARDSGTYGPMPRKVPKGLLGMPFNTTAINGL 532
Query: 73 YCCGDSTFPGIGVPAVAASGAIVANSLVS---VSQHSELLDA 111
YC GDS FPG GV AVA SG + A+ + + + + + +LDA
Sbjct: 533 YCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGIEKKAPVLDA 574
>sp|Q2VEX9|CRTSO_DAUCA Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO
PE=2 SV=1
Length = 615
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 16 VERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQA---GKETFPGHSTPIPQL 72
+E+ L PG + +K VGTP TH+R+L R+ GTYGP Q G P ++T I L
Sbjct: 502 LEKKLFPGL-QSSIVLKEVGTPKTHRRYLARDSGTYGPMPQGTPKGLLGMPFNTTAIDGL 560
Query: 73 YCCGDSTFPGIGVPAVAASGAIVANSLVS---VSQHSELLDA 111
YC GDS FPG GV AVA SG + A+ + + + Q S +LDA
Sbjct: 561 YCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGLEQKSPILDA 602
>sp|Q52QW2|CRTS2_ONCHC Prolycopene isomerase 2, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO2 PE=2 SV=1
Length = 587
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 45/102 (44%), Positives = 61/102 (59%), Gaps = 7/102 (6%)
Query: 16 VERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGP---AIQAGKETFPGHSTPIPQL 72
+E+ L PG +D +K VGTP TH+RFL R+ GTYGP + G P ++T I L
Sbjct: 474 LEKKLFPGL-KDSVVLKEVGTPKTHRRFLARDSGTYGPMPRKVPKGLLGMPFNTTAINGL 532
Query: 73 YCCGDSTFPGIGVPAVAASGAIVANSLVS---VSQHSELLDA 111
YC GDS FPG GV AVA SG + A+ + + + + +LDA
Sbjct: 533 YCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKAPVLDA 574
>sp|Q9M9Y8|CRTSO_ARATH Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana
GN=CRTISO PE=2 SV=2
Length = 595
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/93 (45%), Positives = 55/93 (59%), Gaps = 4/93 (4%)
Query: 12 IWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQA---GKETFPGHSTP 68
I + +E+ L PG K VGTP TH+RFL R++GTYGP + G P ++T
Sbjct: 478 IIQRLEKKLFPGLS-SSITFKEVGTPRTHRRFLARDKGTYGPMPRGTPKGLLGMPFNTTA 536
Query: 69 IPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101
I LYC GDS FPG GV AVA SG + A+ + +
Sbjct: 537 IDGLYCVGDSCFPGQGVIAVAFSGVMCAHRVAA 569
>sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum
GN=CRTISO PE=1 SV=1
Length = 615
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 59/102 (57%), Gaps = 7/102 (6%)
Query: 16 VERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGP---AIQAGKETFPGHSTPIPQL 72
+E+ L PG + K VGTP TH+R+L R+ GTYGP G P ++T I L
Sbjct: 502 LEKTLFPGL-KSSILFKEVGTPKTHRRYLARDSGTYGPMPRGTPKGLLGMPFNTTAIDGL 560
Query: 73 YCCGDSTFPGIGVPAVAASGAIVANSLVS---VSQHSELLDA 111
YC GDS FPG GV AVA SG + A+ + + + S++LD+
Sbjct: 561 YCVGDSCFPGQGVIAVAFSGVMCAHRVAADLGFEKKSDVLDS 602
>sp|Q6G6B0|CRTP_STAAS Diapolycopene oxygenase OS=Staphylococcus aureus (strain MSSA476)
GN=crtP PE=3 SV=1
Length = 497
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGIPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q8NUQ3|CRTP_STAAW Diapolycopene oxygenase OS=Staphylococcus aureus (strain MW2)
GN=crtP PE=3 SV=1
Length = 497
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGFVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGIPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q6GDN5|CRTP_STAAR Diapolycopene oxygenase OS=Staphylococcus aureus (strain MRSA252)
GN=crtP PE=3 SV=1
Length = 497
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q7A3D9|CRTP_STAAN Diapolycopene oxygenase OS=Staphylococcus aureus (strain N315)
GN=crtP PE=1 SV=1
Length = 497
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q99R73|CRTP_STAAM Diapolycopene oxygenase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=crtP PE=1 SV=1
Length = 497
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q53589|CRTP_STAAE Diapolycopene oxygenase OS=Staphylococcus aureus (strain Newman)
GN=crtP PE=3 SV=2
Length = 497
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q5HCY6|CRTP_STAAC Diapolycopene oxygenase OS=Staphylococcus aureus (strain COL)
GN=crtP PE=3 SV=1
Length = 497
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q2FV57|CRTP_STAA8 Diapolycopene oxygenase OS=Staphylococcus aureus (strain NCTC 8325)
GN=crtP PE=1 SV=1
Length = 497
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q2FDU3|CRTP_STAA3 Diapolycopene oxygenase OS=Staphylococcus aureus (strain USA300)
GN=crtP PE=3 SV=1
Length = 497
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K FP S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFPKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|P48537|CRTI_CERNC Phytoene desaturase OS=Cercospora nicotianae GN=PDH1 PE=3 SV=1
Length = 621
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 49 GTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSL 99
G G A + + F G I LY G S PG GVP A GA+VA +
Sbjct: 510 GVLGRAAEVIIDAFRGRGKDIKGLYMVGASAHPGTGVPICLAGGALVAEQI 560
>sp|Q4L975|CRTN_STAHJ Dehydrosqualene desaturase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=crtN PE=3 SV=2
Length = 501
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 63 PGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSE 107
P S LY G ST PG GVP V S I A +++ +H +
Sbjct: 457 PNVSRDYKDLYFAGASTHPGAGVPIVLTSAKITAEAMLEDIEHGK 501
>sp|Q2YWE5|CRTP_STAAB Diapolycopene oxygenase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=crtP PE=3 SV=1
Length = 497
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
V TP ++ R NRG YG K F S LY G S PG G+P V
Sbjct: 419 VWTPEDIEKNYRSNRGAIYGVVADKKKNKGFKFTKESQYFENLYFVGGSVNPGGGMPMVT 478
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 479 LSGQQVADKI 488
>sp|Q85WS8|RPOC1_PINKO DNA-directed RNA polymerase subunit beta' OS=Pinus koraiensis
GN=rpoC1 PE=3 SV=1
Length = 696
Score = 32.7 bits (73), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 29 CDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQ-LYCCGDSTF 80
CD+ F+ P+ + L R+RGT+ IQ+ K+ P + + P L+ G TF
Sbjct: 143 CDL-FLARPIAKKPTLLRSRGTFNYEIQSWKDIIPHYLSARPHYLFARGSGTF 194
>sp|P17054|CRTI_RHOCB Phytoene desaturase (neurosporene-forming) OS=Rhodobacter
capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=crtI PE=1 SV=1
Length = 524
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 66 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSL 99
S + LY G T PG GVP+V SG +VA +
Sbjct: 466 SEEVDGLYLVGAGTHPGAGVPSVIGSGELVAQMI 499
>sp|Q4L978|CRTP_STAHJ Diapolycopene oxygenase OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=crtP PE=3 SV=1
Length = 502
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 34 VGTPLTHQRFLRRNRGT-YGPAIQAGKET---FPGHSTPIPQLYCCGDSTFPGIGVPAVA 89
+ TP +R N+G YG K FP S L+ G S PG G+P V
Sbjct: 420 IWTPHDIERTYGSNKGAIYGVVADKKKNKGFKFPKQSEYFDNLFFVGGSVNPGGGMPMVT 479
Query: 90 ASGAIVANSL 99
SG VA+ +
Sbjct: 480 LSGQQVADKI 489
>sp|P52733|RPOC1_PINTH DNA-directed RNA polymerase subunit beta' OS=Pinus thunbergii
GN=rpoC1 PE=3 SV=1
Length = 696
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 29 CDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIP-QLYCCGDSTFPGIGVPA 87
CD+ F+ P+ ++ L R+RGT+ IQ+ +E P + + P L+ G TF
Sbjct: 143 CDL-FLARPIANKPTLLRSRGTFDYEIQSWREIIPHYLSARPYYLFPRGSGTFKE---RE 198
Query: 88 VAASGAIVANSLVSVS 103
+A G + L+ +
Sbjct: 199 IATGGDAIGKQLMGLD 214
>sp|P17059|CRTD_RHOCB Methoxyneurosporene dehydrogenase OS=Rhodobacter capsulatus (strain
ATCC BAA-309 / NBRC 16581 / SB1003) GN=crtD PE=3 SV=2
Length = 494
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 2/85 (2%)
Query: 19 ALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETF--PGHSTPIPQLYCCG 76
A+G F D L +RF YG + + TF P T + LY G
Sbjct: 403 AMGLTFSPDPETRALTTPALLSRRFPGSLGAIYGGSPEGTLATFRRPLARTGLKGLYLAG 462
Query: 77 DSTFPGIGVPAVAASGAIVANSLVS 101
T PG GVP SG A +L++
Sbjct: 463 GGTHPGAGVPMALTSGTHAARALLA 487
>sp|Q5NKV6|ICAM1_MACMU Intercellular adhesion molecule 1 OS=Macaca mulatta GN=ICAM1 PE=2
SV=1
Length = 532
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 14/62 (22%)
Query: 34 VGTPLTHQRFLRRNRGTYGPAIQ----AGKETFPGHS----------TPIPQLYCCGDST 79
V L H+ R R YGP + G T+P +S P+PQL C D T
Sbjct: 377 VAGQLVHKNQTRELRVLYGPRLDEKDCPGNWTWPENSQQTPMCQAWGNPLPQLKCLKDGT 436
Query: 80 FP 81
FP
Sbjct: 437 FP 438
>sp|Q2YWE8|CRTN_STAAB Dehydrosqualene desaturase OS=Staphylococcus aureus (strain bovine
RF122 / ET3-1) GN=crtN PE=3 SV=1
Length = 502
Score = 30.8 bits (68), Expect = 2.9, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + +V
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMV 495
>sp|Q8VHE9|RETST_RAT All-trans-retinol 13,14-reductase OS=Rattus norvegicus GN=Retsat
PE=2 SV=1
Length = 609
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 36/84 (42%), Gaps = 18/84 (21%)
Query: 35 GTPLTHQRFLRRNRG-TYG---------PAIQAGKETFPGHSTPIPQLYCCGDSTFP--- 81
G+PLT+Q +L +RG TYG P A TPIP LY G F
Sbjct: 517 GSPLTNQYYLAAHRGATYGADHDLARLHPHAMASLRA----QTPIPNLYLTGQDIFTCGL 572
Query: 82 -GIGVPAVAASGAIVANSLVSVSQ 104
G A+ S AI+ +L S Q
Sbjct: 573 MGALQGALLCSSAILKRNLYSDLQ 596
>sp|Q5NKV4|ICAM1_PANPA Intercellular adhesion molecule 1 OS=Pan paniscus GN=ICAM1 PE=3
SV=1
Length = 532
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 38 LTHQRFLRRNRGTYGPAIQA----GKETFPGHS----------TPIPQLYCCGDSTFP 81
L H+ R R YGP + G T+P +S P+P+L C D TFP
Sbjct: 381 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQASGNPLPELKCLKDGTFP 438
>sp|P05362|ICAM1_HUMAN Intercellular adhesion molecule 1 OS=Homo sapiens GN=ICAM1 PE=1
SV=2
Length = 532
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 38 LTHQRFLRRNRGTYGPAIQA----GKETFPGHS----------TPIPQLYCCGDSTFP 81
L H+ R R YGP + G T+P +S P+P+L C D TFP
Sbjct: 381 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>sp|Q8NUQ6|CRTN_STAAW Dehydrosqualene desaturase OS=Staphylococcus aureus (strain MW2)
GN=crtN PE=3 SV=1
Length = 502
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + ++
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q6G6B3|CRTN_STAAS Dehydrosqualene desaturase OS=Staphylococcus aureus (strain
MSSA476) GN=crtN PE=3 SV=1
Length = 502
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + ++
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q6GDN7|CRTN_STAAR Dehydrosqualene desaturase OS=Staphylococcus aureus (strain
MRSA252) GN=crtN PE=3 SV=1
Length = 502
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + ++
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q7A3E2|CRTN_STAAN Dehydrosqualene desaturase OS=Staphylococcus aureus (strain N315)
GN=crtN PE=1 SV=1
Length = 502
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + ++
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q99R76|CRTN_STAAM Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Mu50 /
ATCC 700699) GN=crtN PE=3 SV=1
Length = 502
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + ++
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|O07855|CRTN_STAAE Dehydrosqualene desaturase OS=Staphylococcus aureus (strain Newman)
GN=crtN PE=1 SV=2
Length = 502
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + ++
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q5HCY9|CRTN_STAAC Dehydrosqualene desaturase OS=Staphylococcus aureus (strain COL)
GN=crtN PE=3 SV=1
Length = 502
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + ++
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q2FV60|CRTN_STAA8 Dehydrosqualene desaturase OS=Staphylococcus aureus (strain NCTC
8325) GN=crtN PE=3 SV=1
Length = 502
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + ++
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q2FDU6|CRTN_STAA3 Dehydrosqualene desaturase OS=Staphylococcus aureus (strain USA300)
GN=crtN PE=3 SV=1
Length = 502
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 72 LYCCGDSTFPGIGVPAVAASGAIVANSLV 100
LY G ST PG GVP V S I + ++
Sbjct: 467 LYFAGASTHPGAGVPIVLTSAKITVDEMI 495
>sp|Q28806|ICAM1_PANTR Intercellular adhesion molecule 1 OS=Pan troglodytes GN=ICAM1 PE=2
SV=2
Length = 532
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 38 LTHQRFLRRNRGTYGPAIQA----GKETFPGHS----------TPIPQLYCCGDSTFP 81
L H+ R R YGP + G T+P +S P+P+L C D TFP
Sbjct: 381 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQASGNPLPELKCLKDGTFP 438
>sp|P22871|CRTI_ESCVU Phytoene desaturase (lycopene-forming) OS=Escherichia vulneris
GN=crtI PE=3 SV=1
Length = 492
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 66 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQ 104
+ I LY G T PG G+P V AS A+ ++ Q
Sbjct: 454 DSDIANLYLVGAGTHPGAGIPGVVASAKATASLMIEDLQ 492
>sp|Q5NKV9|ICAM1_GORGO Intercellular adhesion molecule 1 OS=Gorilla gorilla gorilla
GN=ICAM1 PE=2 SV=1
Length = 532
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 14/58 (24%)
Query: 38 LTHQRFLRRNRGTYGPAIQA----GKETFPGHS----------TPIPQLYCCGDSTFP 81
L H+ R R YGP + G T+P +S P+P+L C D TFP
Sbjct: 381 LIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFP 438
>sp|Q0VF58|COJA1_MOUSE Collagen alpha-1(XIX) chain OS=Mus musculus GN=Col19a1 PE=2 SV=2
Length = 1136
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 8/71 (11%)
Query: 22 PGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPG-HSTPIPQLYCCGDSTF 80
PG K D G L + L N G+ GP G+ PG H +P GD+
Sbjct: 564 PGLPGLKGDAGPPGISLPGKPGLDGNPGSPGPRGPKGERGLPGLHGSP-------GDTGP 616
Query: 81 PGIGVPAVAAS 91
PG+G+P S
Sbjct: 617 PGVGIPGRTGS 627
>sp|Q64FW2|RETST_MOUSE All-trans-retinol 13,14-reductase OS=Mus musculus GN=Retsat PE=1
SV=3
Length = 609
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 35/84 (41%), Gaps = 18/84 (21%)
Query: 35 GTPLTHQRFLRRNRG-TYG---------PAIQAGKETFPGHSTPIPQLYCCGDSTFP--- 81
G+PLT+Q +L RG TYG P A TPIP LY G F
Sbjct: 517 GSPLTNQYYLAAPRGATYGADHDLARLHPHAMASIRA----QTPIPNLYLTGQDIFTCGL 572
Query: 82 -GIGVPAVAASGAIVANSLVSVSQ 104
G A+ S AI+ +L S Q
Sbjct: 573 MGALQGALLCSSAILKRNLYSDLQ 596
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,393,844
Number of Sequences: 539616
Number of extensions: 1788369
Number of successful extensions: 4258
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 4219
Number of HSP's gapped (non-prelim): 47
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)