Query 033665
Match_columns 114
No_of_seqs 122 out of 1014
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 04:53:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033665.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033665hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02733 desat_CrtD C-3',4' d 99.9 1.9E-26 4E-31 182.8 11.3 99 2-102 390-491 (492)
2 TIGR02734 crtI_fam phytoene de 99.9 1.8E-25 3.9E-30 177.4 10.7 101 3-105 389-494 (502)
3 TIGR02730 carot_isom carotene 99.9 8E-25 1.7E-29 173.9 11.0 98 3-102 391-491 (493)
4 KOG4254 Phytoene desaturase [C 99.9 2E-21 4.4E-26 152.4 10.0 108 2-113 441-556 (561)
5 COG1233 Phytoene dehydrogenase 99.8 3.1E-18 6.6E-23 136.7 9.7 98 2-102 381-482 (487)
6 PLN02612 phytoene desaturase 98.8 1.3E-08 2.7E-13 83.1 7.3 89 4-104 453-549 (567)
7 PLN02487 zeta-carotene desatur 98.4 1.8E-06 3.8E-11 70.8 9.2 89 4-105 463-555 (569)
8 PF01593 Amino_oxidase: Flavin 98.4 1.4E-07 2.9E-12 71.4 2.5 89 5-100 356-450 (450)
9 TIGR02732 zeta_caro_desat caro 98.3 2.3E-06 4.9E-11 68.5 8.0 85 4-100 387-474 (474)
10 PRK07233 hypothetical protein; 98.2 6.4E-06 1.4E-10 63.8 8.1 88 4-102 341-430 (434)
11 TIGR02731 phytoene_desat phyto 98.2 6.6E-06 1.4E-10 64.8 6.9 84 4-100 362-453 (453)
12 TIGR03467 HpnE squalene-associ 98.2 5.1E-06 1.1E-10 63.9 6.1 86 5-101 332-419 (419)
13 PRK11883 protoporphyrinogen ox 97.5 0.00016 3.4E-09 56.5 4.2 84 5-101 365-450 (451)
14 PLN02676 polyamine oxidase 96.7 0.0053 1.2E-07 49.5 6.6 91 6-103 379-473 (487)
15 PRK12416 protoporphyrinogen ox 96.6 0.0018 4E-08 51.2 3.0 87 5-102 373-460 (463)
16 PLN02268 probable polyamine ox 96.5 0.0074 1.6E-07 47.3 6.1 89 5-101 340-432 (435)
17 TIGR00562 proto_IX_ox protopor 96.2 0.019 4.1E-07 45.2 6.9 87 5-102 372-459 (462)
18 COG3349 Uncharacterized conser 96.1 0.011 2.3E-07 48.0 4.9 88 5-104 375-464 (485)
19 COG3380 Predicted NAD/FAD-depe 95.5 0.012 2.7E-07 44.8 2.7 32 69-101 298-329 (331)
20 PLN02576 protoporphyrinogen ox 95.0 0.027 5.8E-07 44.9 3.6 32 70-102 455-486 (496)
21 PLN02568 polyamine oxidase 94.0 0.07 1.5E-06 43.7 3.8 34 70-103 500-535 (539)
22 PLN02976 amine oxidase 93.9 0.076 1.7E-06 48.5 4.1 91 6-102 1090-1185(1713)
23 PLN02328 lysine-specific histo 93.4 0.078 1.7E-06 45.6 3.2 94 5-103 579-679 (808)
24 PLN02529 lysine-specific histo 93.1 0.063 1.4E-06 45.7 2.3 94 5-103 499-598 (738)
25 PRK12842 putative succinate de 92.8 0.23 4.9E-06 40.8 5.1 40 65-104 520-568 (574)
26 PRK11259 solA N-methyltryptoph 92.7 0.42 9.1E-06 36.4 6.1 79 6-105 285-363 (376)
27 PRK06134 putative FAD-binding 91.5 0.52 1.1E-05 38.9 5.7 40 65-104 524-572 (581)
28 PLN03000 amine oxidase 91.2 0.19 4.1E-06 43.7 2.8 93 5-103 523-623 (881)
29 TIGR01377 soxA_mon sarcosine o 90.1 1.2 2.5E-05 34.0 6.2 79 7-105 285-363 (380)
30 TIGR03329 Phn_aa_oxid putative 89.9 2.5 5.4E-05 33.7 8.1 77 7-103 318-395 (460)
31 TIGR02352 thiamin_ThiO glycine 89.8 1.7 3.8E-05 32.2 6.8 77 7-102 260-336 (337)
32 PRK12839 hypothetical protein; 89.5 0.83 1.8E-05 37.7 5.2 38 65-102 521-567 (572)
33 PRK12835 3-ketosteroid-delta-1 88.8 0.96 2.1E-05 37.4 5.1 38 65-102 523-569 (584)
34 COG1232 HemY Protoporphyrinoge 88.2 0.59 1.3E-05 37.7 3.4 84 5-101 358-444 (444)
35 PRK00711 D-amino acid dehydrog 88.0 3.6 7.7E-05 31.8 7.7 35 68-104 370-404 (416)
36 PRK12844 3-ketosteroid-delta-1 88.0 0.72 1.6E-05 37.9 3.9 38 65-102 503-549 (557)
37 PRK12837 3-ketosteroid-delta-1 87.9 0.6 1.3E-05 37.9 3.4 38 65-102 465-511 (513)
38 PRK07121 hypothetical protein; 87.8 0.68 1.5E-05 37.2 3.6 37 66-102 446-490 (492)
39 PRK08274 tricarballylate dehyd 87.3 0.58 1.3E-05 37.1 2.9 37 66-102 415-460 (466)
40 TIGR01373 soxB sarcosine oxida 86.9 5.6 0.00012 30.8 8.2 76 7-103 310-386 (407)
41 TIGR02485 CobZ_N-term precorri 86.6 0.83 1.8E-05 36.0 3.4 37 65-101 383-428 (432)
42 PRK12831 putative oxidoreducta 86.5 0.93 2E-05 36.4 3.7 37 65-101 422-458 (464)
43 PRK12843 putative FAD-binding 86.5 0.89 1.9E-05 37.5 3.7 38 65-102 525-571 (578)
44 COG2509 Uncharacterized FAD-de 86.5 0.6 1.3E-05 37.9 2.6 39 65-103 445-483 (486)
45 TIGR01812 sdhA_frdA_Gneg succi 86.2 0.7 1.5E-05 37.8 2.9 34 67-100 357-399 (566)
46 TIGR01811 sdhA_Bsu succinate d 86.1 5 0.00011 33.4 7.9 37 64-100 378-422 (603)
47 PRK12834 putative FAD-binding 85.9 0.84 1.8E-05 37.3 3.2 35 66-100 501-547 (549)
48 PRK06263 sdhA succinate dehydr 85.6 0.95 2E-05 37.0 3.4 38 64-101 356-401 (543)
49 TIGR00551 nadB L-aspartate oxi 85.5 0.99 2.1E-05 36.3 3.4 38 64-101 341-387 (488)
50 PRK09231 fumarate reductase fl 85.0 1 2.2E-05 37.3 3.3 37 64-100 366-411 (582)
51 PRK06116 glutathione reductase 85.0 1.6 3.4E-05 34.6 4.3 39 65-103 291-329 (450)
52 PRK12769 putative oxidoreducta 85.0 1.3 2.8E-05 37.1 3.9 37 65-101 613-649 (654)
53 PRK07843 3-ketosteroid-delta-1 85.0 1.1 2.4E-05 36.8 3.5 38 65-102 510-556 (557)
54 TIGR01292 TRX_reduct thioredox 85.0 1.1 2.4E-05 32.7 3.2 37 65-101 261-298 (300)
55 TIGR01316 gltA glutamate synth 84.8 1.4 3.1E-05 35.1 3.9 37 65-101 411-447 (449)
56 PLN02507 glutathione reductase 84.7 1.7 3.7E-05 35.2 4.4 40 63-102 324-363 (499)
57 PRK12810 gltD glutamate syntha 84.7 1.4 3E-05 35.3 3.9 38 65-102 426-463 (471)
58 PRK07803 sdhA succinate dehydr 84.0 1.2 2.5E-05 37.3 3.2 35 66-100 402-444 (626)
59 PRK09078 sdhA succinate dehydr 84.0 1.4 3E-05 36.6 3.7 35 67-101 383-426 (598)
60 TIGR01424 gluta_reduc_2 glutat 83.9 1.9 4.1E-05 34.2 4.3 39 64-102 288-326 (446)
61 PRK13984 putative oxidoreducta 83.8 1.3 2.8E-05 36.6 3.4 36 65-101 564-599 (604)
62 PRK08275 putative oxidoreducta 83.6 1.1 2.4E-05 36.7 2.9 37 64-100 364-401 (554)
63 PRK12409 D-amino acid dehydrog 83.6 6.1 0.00013 30.6 7.0 76 7-103 332-407 (410)
64 PRK05675 sdhA succinate dehydr 83.5 1.5 3.2E-05 36.2 3.6 34 67-100 360-402 (570)
65 PRK08641 sdhA succinate dehydr 83.3 1.3 2.9E-05 36.6 3.3 36 65-100 364-407 (589)
66 PRK06175 L-aspartate oxidase; 83.0 1.2 2.7E-05 35.3 2.9 38 64-101 339-385 (433)
67 PRK12845 3-ketosteroid-delta-1 83.0 1.4 3.1E-05 36.3 3.4 37 65-101 518-563 (564)
68 PRK12775 putative trifunctiona 82.6 1.7 3.7E-05 38.4 3.8 37 65-101 716-752 (1006)
69 PRK09077 L-aspartate oxidase; 82.6 1.6 3.4E-05 35.7 3.4 38 64-101 361-407 (536)
70 PRK11749 dihydropyrimidine deh 82.5 1.6 3.5E-05 34.7 3.4 37 65-101 413-449 (457)
71 PRK07395 L-aspartate oxidase; 82.5 0.77 1.7E-05 37.8 1.6 35 64-99 355-399 (553)
72 TIGR01816 sdhA_forward succina 82.3 1.4 3E-05 36.3 3.0 34 67-100 351-393 (565)
73 PRK10157 putative oxidoreducta 82.3 1.4 3E-05 34.9 2.9 33 69-101 294-333 (428)
74 PRK04965 NADH:flavorubredoxin 82.1 2.2 4.7E-05 32.9 3.9 41 64-104 260-304 (377)
75 COG0665 DadA Glycine/D-amino a 82.1 6.1 0.00013 30.0 6.4 35 69-105 336-370 (387)
76 TIGR01176 fum_red_Fp fumarate 82.0 1.7 3.6E-05 36.0 3.4 38 64-101 365-411 (580)
77 PRK13748 putative mercuric red 81.6 2.2 4.7E-05 34.7 3.9 39 65-103 391-429 (561)
78 TIGR01421 gluta_reduc_1 glutat 81.5 2.4 5.2E-05 33.8 4.1 38 65-102 291-328 (450)
79 TIGR01317 GOGAT_sm_gam glutama 81.1 1.8 3.9E-05 34.9 3.3 37 65-101 440-476 (485)
80 PRK05945 sdhA succinate dehydr 81.1 2 4.3E-05 35.4 3.5 34 67-100 368-410 (575)
81 TIGR01318 gltD_gamma_fam gluta 80.8 2.2 4.7E-05 34.3 3.6 36 66-101 428-463 (467)
82 PRK14694 putative mercuric red 80.8 2.6 5.5E-05 33.7 4.0 40 64-103 297-336 (468)
83 PRK08958 sdhA succinate dehydr 80.6 1.9 4.1E-05 35.7 3.3 34 67-100 378-420 (588)
84 PRK06292 dihydrolipoamide dehy 80.6 2.8 6E-05 33.2 4.1 39 64-102 293-331 (460)
85 PLN02546 glutathione reductase 80.6 2.6 5.6E-05 34.9 4.0 40 64-103 375-414 (558)
86 PRK10262 thioredoxin reductase 80.6 0.99 2.2E-05 33.9 1.5 37 65-101 275-312 (321)
87 PRK07845 flavoprotein disulfid 80.5 3 6.5E-05 33.3 4.3 40 64-103 299-338 (466)
88 TIGR03315 Se_ygfK putative sel 80.5 2.3 5E-05 37.7 3.9 39 65-103 801-839 (1012)
89 PRK06069 sdhA succinate dehydr 80.5 1.6 3.5E-05 35.9 2.8 33 68-100 370-411 (577)
90 PRK14727 putative mercuric red 80.1 2.6 5.6E-05 33.8 3.9 40 64-103 308-347 (479)
91 PRK05249 soluble pyridine nucl 80.0 2.8 6.1E-05 33.1 4.0 38 65-102 298-335 (461)
92 PRK08205 sdhA succinate dehydr 79.9 2.2 4.7E-05 35.3 3.4 34 67-100 373-415 (583)
93 PRK08071 L-aspartate oxidase; 79.8 2 4.3E-05 34.9 3.1 38 64-101 340-386 (510)
94 PLN00128 Succinate dehydrogena 79.7 2.2 4.7E-05 35.8 3.4 35 67-101 421-464 (635)
95 TIGR01423 trypano_reduc trypan 79.6 3.2 6.8E-05 33.6 4.2 40 64-103 313-352 (486)
96 PRK06481 fumarate reductase fl 79.5 1.6 3.5E-05 35.3 2.5 37 65-101 457-501 (506)
97 PRK08401 L-aspartate oxidase; 79.5 2.1 4.5E-05 34.3 3.1 37 65-101 319-364 (466)
98 PRK12778 putative bifunctional 79.2 2.3 4.9E-05 36.2 3.4 37 65-101 711-747 (752)
99 PRK12809 putative oxidoreducta 79.0 2.5 5.4E-05 35.3 3.5 37 65-101 596-632 (639)
100 TIGR01813 flavo_cyto_c flavocy 78.9 1 2.2E-05 35.4 1.1 30 67-96 401-438 (439)
101 PRK07818 dihydrolipoamide dehy 78.8 3.3 7.2E-05 33.0 4.1 40 64-103 298-337 (466)
102 COG0644 FixC Dehydrogenases (f 78.6 2.7 5.8E-05 32.8 3.4 34 69-102 268-306 (396)
103 PRK07512 L-aspartate oxidase; 78.5 1.8 3.8E-05 35.2 2.5 38 64-101 349-395 (513)
104 TIGR01350 lipoamide_DH dihydro 78.0 3.7 8E-05 32.4 4.1 40 65-104 295-334 (461)
105 PRK15317 alkyl hydroperoxide r 77.9 2 4.4E-05 34.8 2.7 38 64-101 471-509 (517)
106 PRK06416 dihydrolipoamide dehy 77.7 4.3 9.2E-05 32.2 4.4 39 65-103 297-335 (462)
107 TIGR03452 mycothione_red mycot 77.7 3.8 8.3E-05 32.6 4.1 39 64-102 290-328 (452)
108 PRK06370 mercuric reductase; V 77.7 3.9 8.6E-05 32.5 4.2 39 64-102 296-334 (463)
109 PRK12770 putative glutamate sy 77.1 3.6 7.8E-05 31.5 3.7 37 65-101 311-347 (352)
110 PRK06467 dihydrolipoamide dehy 77.1 3.8 8.3E-05 32.8 4.0 39 65-103 300-338 (471)
111 TIGR03140 AhpF alkyl hydropero 77.0 1.5 3.3E-05 35.5 1.7 38 64-101 472-510 (515)
112 PTZ00139 Succinate dehydrogena 76.8 3.4 7.3E-05 34.5 3.7 35 67-101 400-443 (617)
113 TIGR02053 MerA mercuric reduct 76.8 4 8.7E-05 32.4 4.0 39 64-102 291-329 (463)
114 PF01266 DAO: FAD dependent ox 76.7 1.1 2.3E-05 33.2 0.7 71 9-98 288-358 (358)
115 TIGR02028 ChlP geranylgeranyl 76.7 3.1 6.8E-05 32.5 3.3 33 69-101 269-306 (398)
116 PF05199 GMC_oxred_C: GMC oxid 76.3 2.2 4.7E-05 28.0 2.1 35 63-97 107-142 (144)
117 PRK13800 putative oxidoreducta 75.6 2.9 6.2E-05 36.4 3.1 37 64-100 369-406 (897)
118 PLN02815 L-aspartate oxidase 75.5 3.2 6.9E-05 34.6 3.2 37 64-100 385-430 (594)
119 PRK07057 sdhA succinate dehydr 75.4 3.1 6.8E-05 34.5 3.1 34 68-101 382-424 (591)
120 PRK10015 oxidoreductase; Provi 75.4 3.1 6.8E-05 33.0 3.0 33 69-101 294-333 (429)
121 PRK12814 putative NADPH-depend 75.1 4.1 8.9E-05 34.2 3.8 37 65-101 462-498 (652)
122 PRK06327 dihydrolipoamide dehy 74.8 4.7 0.0001 32.3 3.9 39 65-103 310-348 (475)
123 PRK12779 putative bifunctional 74.0 3.4 7.3E-05 36.4 3.1 37 65-101 588-624 (944)
124 PRK07846 mycothione reductase; 73.9 5.4 0.00012 31.8 4.1 39 64-102 287-325 (451)
125 PRK09853 putative selenate red 72.9 4.8 0.0001 35.8 3.8 39 65-103 803-841 (1019)
126 COG1231 Monoamine oxidase [Ami 72.7 18 0.00039 29.5 6.6 90 6-102 352-446 (450)
127 cd00491 4Oxalocrotonate_Tautom 72.6 13 0.00029 20.4 4.5 20 2-21 13-32 (58)
128 PRK06115 dihydrolipoamide dehy 72.5 5.8 0.00013 31.7 3.9 39 65-103 301-339 (466)
129 PRK12771 putative glutamate sy 72.0 4.8 0.0001 33.0 3.4 36 65-100 405-440 (564)
130 TIGR00136 gidA glucose-inhibit 71.8 13 0.00027 31.5 5.8 39 64-103 351-394 (617)
131 PRK06912 acoL dihydrolipoamide 71.7 6.2 0.00013 31.4 3.9 39 65-103 293-331 (458)
132 PLN00093 geranylgeranyl diphos 71.5 4.7 0.0001 32.3 3.2 34 68-101 307-345 (450)
133 PLN02852 ferredoxin-NADP+ redu 71.1 3 6.5E-05 34.0 2.0 36 66-102 383-420 (491)
134 KOG0029 Amine oxidase [Seconda 70.4 8.6 0.00019 31.5 4.5 90 5-102 362-458 (501)
135 TIGR00013 taut 4-oxalocrotonat 70.2 17 0.00037 20.4 4.8 38 2-40 14-51 (63)
136 TIGR01438 TGR thioredoxin and 69.9 7 0.00015 31.5 3.9 38 65-102 306-344 (484)
137 PRK06452 sdhA succinate dehydr 69.8 7.4 0.00016 32.1 4.1 36 65-100 355-400 (566)
138 COG0029 NadB Aspartate oxidase 68.4 2.9 6.3E-05 34.4 1.4 37 64-102 349-396 (518)
139 PRK08626 fumarate reductase fl 68.4 6.2 0.00013 33.3 3.4 37 64-100 380-426 (657)
140 PRK07208 hypothetical protein; 67.7 6.5 0.00014 31.2 3.2 90 5-103 371-461 (479)
141 COG1249 Lpd Pyruvate/2-oxoglut 67.0 9.6 0.00021 30.9 4.1 37 65-101 298-334 (454)
142 TIGR03197 MnmC_Cterm tRNA U-34 66.4 8.5 0.00018 29.6 3.6 37 68-106 330-366 (381)
143 PRK09754 phenylpropionate diox 66.0 11 0.00025 29.2 4.3 40 64-103 262-310 (396)
144 TIGR01372 soxA sarcosine oxida 65.9 8.6 0.00019 33.9 3.9 35 66-101 435-469 (985)
145 PRK05976 dihydrolipoamide dehy 65.3 11 0.00023 30.1 4.1 39 65-103 306-344 (472)
146 PRK07573 sdhA succinate dehydr 65.1 7.5 0.00016 32.7 3.3 33 64-96 414-454 (640)
147 PTZ00052 thioredoxin reductase 65.0 10 0.00022 30.7 3.9 38 66-103 304-342 (499)
148 PRK08010 pyridine nucleotide-d 64.9 12 0.00027 29.4 4.3 39 64-102 279-317 (441)
149 KOG1276 Protoporphyrinogen oxi 64.8 4.3 9.3E-05 33.0 1.7 82 5-100 404-490 (491)
150 PRK07804 L-aspartate oxidase; 64.4 6.3 0.00014 32.3 2.7 36 65-100 366-410 (541)
151 TIGR02023 BchP-ChlP geranylger 64.0 9 0.00019 29.6 3.3 33 69-101 263-300 (388)
152 KOG0685 Flavin-containing amin 63.4 9.9 0.00021 31.2 3.5 36 66-101 452-489 (498)
153 PRK11445 putative oxidoreducta 60.2 13 0.00028 28.4 3.6 33 70-102 264-301 (351)
154 PTZ00306 NADH-dependent fumara 60.2 8.2 0.00018 34.7 2.8 36 66-101 857-900 (1167)
155 PRK06854 adenylylsulfate reduc 59.9 11 0.00025 31.3 3.4 34 66-99 392-427 (608)
156 PTZ00058 glutathione reductase 59.8 15 0.00032 30.5 4.0 39 64-102 360-432 (561)
157 TIGR03143 AhpF_homolog putativ 59.7 11 0.00024 30.9 3.3 36 65-100 269-305 (555)
158 TIGR02061 aprA adenosine phosp 59.5 11 0.00025 31.6 3.4 14 66-79 403-416 (614)
159 COG0445 GidA Flavin-dependent 59.0 7.4 0.00016 32.7 2.1 36 64-103 353-396 (621)
160 TIGR02032 GG-red-SF geranylger 58.5 12 0.00026 27.0 3.0 31 69-99 260-295 (295)
161 PRK06847 hypothetical protein; 58.5 20 0.00042 27.2 4.3 35 69-103 281-320 (375)
162 PRK07251 pyridine nucleotide-d 58.3 17 0.00037 28.6 4.1 39 64-102 278-316 (438)
163 PRK02106 choline dehydrogenase 57.3 16 0.00035 29.9 3.9 41 63-103 490-535 (560)
164 COG2921 Uncharacterized conser 56.9 16 0.00035 23.1 2.9 30 2-32 22-51 (90)
165 PF14123 DUF4290: Domain of un 55.8 14 0.00031 26.2 2.9 26 2-29 32-57 (176)
166 COG0492 TrxB Thioredoxin reduc 55.5 11 0.00023 28.9 2.4 38 64-101 260-298 (305)
167 PRK05329 anaerobic glycerol-3- 54.6 13 0.00028 29.8 2.8 35 66-102 377-419 (422)
168 PRK02220 4-oxalocrotonate taut 53.6 38 0.00082 18.8 4.2 20 2-21 14-33 (61)
169 TIGR02462 pyranose_ox pyranose 53.6 65 0.0014 26.8 6.8 23 63-85 498-521 (544)
170 PRK13512 coenzyme A disulfide 52.8 18 0.00038 28.7 3.3 39 64-102 264-312 (438)
171 PRK09564 coenzyme A disulfide 52.2 16 0.00034 28.7 2.9 40 64-103 269-318 (444)
172 COG3573 Predicted oxidoreducta 52.0 6 0.00013 31.6 0.5 36 65-100 502-549 (552)
173 KOG4716 Thioredoxin reductase 51.2 17 0.00037 29.1 2.9 40 66-105 328-368 (503)
174 PRK04176 ribulose-1,5-biphosph 48.6 18 0.0004 26.7 2.7 34 69-102 213-253 (257)
175 TIGR00292 thiazole biosynthesi 48.5 19 0.00042 26.6 2.8 34 69-102 212-252 (254)
176 COG1635 THI4 Ribulose 1,5-bisp 48.2 15 0.00033 27.5 2.1 36 67-102 216-258 (262)
177 PRK00745 4-oxalocrotonate taut 48.2 48 0.001 18.5 4.3 20 2-21 14-33 (62)
178 COG4741 Predicted secreted end 47.7 8.6 0.00019 26.9 0.7 38 12-50 91-128 (175)
179 KOG2853 Possible oxidoreductas 46.0 43 0.00094 27.0 4.4 79 7-103 405-483 (509)
180 PRK15031 5-carboxymethyl-2-hyd 45.2 28 0.00061 23.3 2.9 40 2-42 74-118 (126)
181 KOG2606 OTU (ovarian tumor)-li 45.0 29 0.00062 26.8 3.2 52 2-56 190-243 (302)
182 PRK00907 hypothetical protein; 45.0 25 0.00054 22.3 2.5 21 3-24 25-45 (92)
183 PRK09126 hypothetical protein; 44.7 20 0.00044 27.4 2.5 33 69-101 279-316 (392)
184 COG2081 Predicted flavoprotein 44.5 24 0.00052 28.4 2.8 34 68-101 367-405 (408)
185 TIGR01988 Ubi-OHases Ubiquinon 44.3 25 0.00055 26.5 2.9 33 69-101 275-312 (385)
186 PRK01747 mnmC bifunctional tRN 42.5 33 0.00073 28.7 3.6 34 69-104 602-635 (662)
187 TIGR02374 nitri_red_nirB nitri 42.4 36 0.00077 29.4 3.8 39 65-103 260-302 (785)
188 COG1574 Predicted metal-depend 42.0 57 0.0012 27.1 4.8 41 6-47 344-388 (535)
189 KOG0405 Pyridine nucleotide-di 41.9 24 0.00053 28.4 2.5 38 65-102 313-350 (478)
190 PRK10597 DNA damage-inducible 41.2 73 0.0016 19.7 4.1 31 4-36 17-47 (81)
191 PRK14989 nitrite reductase sub 41.1 33 0.00072 30.0 3.4 40 65-104 269-312 (847)
192 PF01134 GIDA: Glucose inhibit 40.8 29 0.00063 27.7 2.8 37 65-102 350-391 (392)
193 PRK07538 hypothetical protein; 40.2 56 0.0012 25.4 4.3 33 70-102 297-334 (413)
194 cd05295 MDH_like Malate dehydr 39.9 42 0.00092 27.3 3.7 33 9-46 10-42 (452)
195 PTZ00318 NADH dehydrogenase-li 39.4 42 0.0009 26.4 3.5 35 67-101 306-345 (424)
196 TIGR03378 glycerol3P_GlpB glyc 39.3 29 0.00063 27.9 2.7 33 68-100 381-419 (419)
197 COG1053 SdhA Succinate dehydro 39.0 41 0.00089 28.1 3.5 35 66-100 366-409 (562)
198 PF01361 Tautomerase: Tautomer 38.8 71 0.0015 17.7 3.7 20 2-21 13-32 (60)
199 TIGR01810 betA choline dehydro 38.7 42 0.00091 27.3 3.5 35 68-102 491-529 (532)
200 TIGR03385 CoA_CoA_reduc CoA-di 38.6 36 0.00079 26.6 3.1 39 65-103 257-305 (427)
201 PF00890 FAD_binding_2: FAD bi 38.5 5.3 0.00012 31.0 -1.6 19 67-87 390-408 (417)
202 PRK05335 tRNA (uracil-5-)-meth 38.2 37 0.0008 27.6 3.0 35 68-103 329-367 (436)
203 PLN02661 Putative thiazole syn 38.0 33 0.00072 27.1 2.7 36 69-104 286-328 (357)
204 PRK08243 4-hydroxybenzoate 3-m 37.7 59 0.0013 25.0 4.1 32 70-101 279-315 (392)
205 PRK01271 4-oxalocrotonate taut 36.8 98 0.0021 18.7 5.4 40 2-42 15-54 (76)
206 COG1942 Uncharacterized protei 36.7 95 0.0021 18.5 4.6 20 2-21 15-34 (69)
207 PTZ00153 lipoamide dehydrogena 36.6 54 0.0012 27.9 3.9 34 69-102 462-495 (659)
208 TIGR03862 flavo_PP4765 unchara 33.1 47 0.001 26.3 2.9 33 68-100 335-372 (376)
209 TIGR03169 Nterm_to_SelD pyridi 33.0 52 0.0011 24.9 3.1 36 65-100 266-307 (364)
210 KOG1593 Asparaginase [Amino ac 32.8 66 0.0014 24.8 3.5 28 6-35 286-313 (349)
211 PRK01964 4-oxalocrotonate taut 32.4 98 0.0021 17.4 4.4 20 2-21 14-33 (64)
212 PF07992 Pyr_redox_2: Pyridine 31.7 23 0.00049 24.1 0.8 18 63-80 181-198 (201)
213 COG3075 GlpB Anaerobic glycero 31.2 12 0.00025 29.8 -0.8 32 69-102 377-416 (421)
214 cd02004 TPP_BZL_OCoD_HPCL Thia 30.5 1.7E+02 0.0038 19.7 6.7 30 10-43 2-31 (172)
215 PTZ00397 macrophage migration 30.4 1.1E+02 0.0023 19.6 3.9 31 3-35 72-102 (116)
216 COG0418 PyrC Dihydroorotase [N 30.0 88 0.0019 24.5 3.8 31 5-39 151-181 (344)
217 COG0028 IlvB Thiamine pyrophos 28.4 2.4E+02 0.0051 23.5 6.3 28 11-42 363-390 (550)
218 PRK02289 4-oxalocrotonate taut 28.4 1.2E+02 0.0025 17.0 4.3 20 2-21 14-33 (60)
219 PF05265 DUF723: Protein of un 28.4 43 0.00093 19.6 1.5 29 10-41 6-34 (60)
220 PRK06996 hypothetical protein; 28.0 1E+02 0.0022 23.9 4.0 33 69-101 290-327 (398)
221 PF03555 Flu_C_NS2: Influenza 27.9 31 0.00068 19.2 0.8 18 26-43 37-54 (57)
222 PRK08244 hypothetical protein; 27.8 52 0.0011 26.3 2.4 31 70-100 272-307 (493)
223 COG2075 RPL24A Ribosomal prote 27.7 27 0.00059 20.9 0.6 18 71-88 5-22 (66)
224 PRK05714 2-octaprenyl-3-methyl 27.5 75 0.0016 24.5 3.2 32 69-100 284-320 (405)
225 PF06183 DinI: DinI-like famil 27.1 1.4E+02 0.003 17.5 4.3 28 4-35 5-32 (65)
226 PLN02785 Protein HOTHEAD 27.1 1.9E+02 0.0042 24.2 5.6 40 63-102 535-579 (587)
227 PF07156 Prenylcys_lyase: Pren 26.9 29 0.00063 27.3 0.8 35 69-103 314-348 (368)
228 PF15178 TOM_sub5: Mitochondri 26.9 1.1E+02 0.0025 17.0 2.9 19 2-20 14-32 (51)
229 TIGR00137 gid_trmFO tRNA:m(5)U 26.2 74 0.0016 25.8 2.9 38 65-103 324-366 (433)
230 PF10107 Endonuc_Holl: Endonuc 25.9 29 0.00062 24.3 0.5 39 11-50 77-115 (156)
231 cd02013 TPP_Xsc_like Thiamine 25.9 2.3E+02 0.0051 19.7 6.2 33 10-46 7-40 (196)
232 PRK06753 hypothetical protein; 25.1 1E+02 0.0022 23.3 3.5 32 69-100 269-305 (373)
233 COG2303 BetA Choline dehydroge 25.0 97 0.0021 25.6 3.5 40 63-102 492-536 (542)
234 PRK07364 2-octaprenyl-6-methox 24.2 1E+02 0.0022 23.7 3.3 33 69-101 293-330 (415)
235 PF00390 malic: Malic enzyme, 24.1 1.1E+02 0.0024 21.8 3.3 33 6-41 144-176 (182)
236 PRK06184 hypothetical protein; 23.9 86 0.0019 25.2 3.0 31 69-99 280-315 (502)
237 cd00080 HhH2_motif Helix-hairp 23.7 84 0.0018 18.7 2.3 27 74-103 16-42 (75)
238 TIGR01984 UbiH 2-polyprenyl-6- 23.6 1E+02 0.0022 23.4 3.2 32 70-101 276-312 (382)
239 PF02962 CHMI: 5-carboxymethyl 23.4 1.4E+02 0.0031 19.8 3.5 19 2-20 73-91 (124)
240 PF01494 FAD_binding_3: FAD bi 22.9 68 0.0015 23.5 2.1 32 70-101 291-327 (356)
241 PRK14976 5'-3' exonuclease; Pr 22.5 65 0.0014 24.4 1.9 31 72-105 183-213 (281)
242 smart00279 HhH2 Helix-hairpin- 22.3 52 0.0011 16.9 1.0 24 74-100 10-33 (36)
243 PRK05732 2-octaprenyl-6-methox 22.3 1.1E+02 0.0023 23.3 3.2 32 69-100 281-317 (395)
244 PLN02422 dephospho-CoA kinase 22.2 65 0.0014 23.7 1.8 18 35-52 196-213 (232)
245 PRK06185 hypothetical protein; 21.7 1.2E+02 0.0026 23.3 3.3 33 69-101 283-320 (407)
246 PRK05192 tRNA uridine 5-carbox 21.6 1E+02 0.0022 26.2 3.0 36 64-100 353-393 (618)
247 PF05546 She9_MDM33: She9 / Md 21.6 63 0.0014 23.6 1.6 43 3-48 57-99 (207)
248 cd02003 TPP_IolD Thiamine pyro 21.5 3E+02 0.0065 19.3 5.8 29 10-42 2-30 (205)
249 PRK08020 ubiF 2-octaprenyl-3-m 21.5 1.1E+02 0.0024 23.3 3.0 33 69-101 280-317 (391)
250 cd00580 CHMI 5-carboxymethyl-2 21.4 1.2E+02 0.0025 19.4 2.8 23 2-24 73-95 (113)
251 KOG1606 Stationary phase-induc 21.4 52 0.0011 24.6 1.1 38 5-46 84-121 (296)
252 PF03332 PMM: Eukaryotic phosp 21.3 32 0.00069 25.4 0.0 91 5-111 124-217 (220)
253 cd02002 TPP_BFDC Thiamine pyro 21.1 2.7E+02 0.0059 18.7 5.6 29 10-42 4-32 (178)
254 PF14552 Tautomerase_2: Tautom 20.9 1.5E+02 0.0033 18.1 3.0 32 2-35 42-73 (82)
255 TIGR01989 COQ6 Ubiquinone bios 20.7 1.1E+02 0.0024 24.1 3.0 33 69-101 332-369 (437)
256 smart00517 PolyA C-terminal do 20.3 1.7E+02 0.0038 17.2 3.1 31 2-34 3-33 (64)
257 smart00546 CUE Domain that may 20.3 54 0.0012 17.2 0.8 14 10-24 3-16 (43)
258 PRK06183 mhpA 3-(3-hydroxyphen 20.0 1.1E+02 0.0024 24.8 2.9 32 69-100 285-321 (538)
No 1
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.94 E-value=1.9e-26 Score=182.84 Aligned_cols=99 Identities=22% Similarity=0.302 Sum_probs=92.0
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCC-CCCCCCCCCcC-C-CCCCCCCCcEEEcCCC
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGT-YGPAIQAGKET-F-PGHSTPIPQLYCCGDS 78 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~-~G~~~~~~q~~-~-p~~~t~v~nLyl~G~~ 78 (114)
++.|++++++||+.+++++ |+| +++|++.++.||.||++|+++++|+ ||..+++.|.. + ++.+|+++|||+||+|
T Consensus 390 ~~~k~~~~~~il~~le~~~-p~l-~~~i~~~~v~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~~~~~~t~i~gLyl~G~~ 467 (492)
T TIGR02733 390 TAKKKQYTQTIIERLGHYF-DLL-EENWVHVELATPRTFERWTGRPQGIVGGLGQRPSTFGPFGLSSRTPVKGLWLCGDS 467 (492)
T ss_pred HHHHHHHHHHHHHHHHHHC-CCc-cccEEEEEccCCchHHHHhCCCCcEECCCCcCccccCCcCCCCCCCCCCeEEecCc
Confidence 3678999999999999998 999 9999999999999999999999999 99999888864 3 5568999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHHHhcc
Q 033665 79 TFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 79 ~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
+|||+|++||++||+++|+.|+++
T Consensus 468 ~~pG~Gv~g~~~sg~~~a~~i~~~ 491 (492)
T TIGR02733 468 IHPGEGTAGVSYSALMVVRQILAS 491 (492)
T ss_pred cCCCCcHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999875
No 2
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.93 E-value=1.8e-25 Score=177.44 Aligned_cols=101 Identities=25% Similarity=0.327 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHHHHHHH-hCCCCCCCceeEEEeCCHHHHHHHhCCCCCC-CCCCCCCCCcC-C-CC-CCCCCCcEEEcCC
Q 033665 3 ILSVLKYCVIWRAVERA-LGPGFCRDKCDVKFVGTPLTHQRFLRRNRGT-YGPAIQAGKET-F-PG-HSTPIPQLYCCGD 77 (114)
Q Consensus 3 ~~K~~~~~~il~~l~~~-~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~-~G~~~~~~q~~-~-p~-~~t~v~nLyl~G~ 77 (114)
+.|+++++++|+.++++ + |++ +++|++.++.||.||++|+++++|+ ||..++..|.. + |. .+|+++|||+||+
T Consensus 389 ~~k~~~~~~il~~l~~~~~-p~l-~~~i~~~~~~TP~t~~~~~~~~~G~~~G~~~~~~q~~~~rp~~~~t~i~gLyl~G~ 466 (502)
T TIGR02734 389 VEGPRYRDRILAYLEERAI-PGL-RDRIVVERTFTPADFRDRYNAWLGSAFSLEHTLTQSAWFRPHNRDRKIDNLYLVGA 466 (502)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCh-hHheEEEEEcCHHHHHHhcCCCCccccchhhchhhcccCCCCCCCCCCCCEEEeCC
Confidence 56889999999999998 8 999 9999999999999999999999999 99999888864 3 53 5789999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcccch
Q 033665 78 STFPGIGVPAVAASGAIVANSLVSVSQH 105 (114)
Q Consensus 78 ~~~PG~Gv~ga~~sg~~~a~~i~~~~~~ 105 (114)
|+|||+|+++|++||+++|+.|+++.+.
T Consensus 467 ~~~pG~Gv~g~~~sg~~~a~~il~~~~~ 494 (502)
T TIGR02734 467 GTHPGAGVPGVLGSAKATAKLMLGDLAP 494 (502)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999987543
No 3
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.92 E-value=8e-25 Score=173.94 Aligned_cols=98 Identities=42% Similarity=0.633 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCC---CCCCCCCCcEEEcCCCC
Q 033665 3 ILSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETF---PGHSTPIPQLYCCGDST 79 (114)
Q Consensus 3 ~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~---p~~~t~v~nLyl~G~~~ 79 (114)
+.|++++++|++.+++++ |++ +++|++.++.||.|+++|+++++|+||..+...|..+ |.++|+++|||+||+|+
T Consensus 391 ~~k~~~~~~il~~l~~~~-p~l-~~~I~~~~~~TP~t~~r~~~~~~G~~G~~~~~~~~~~~~~~~~~t~i~gLyl~G~~~ 468 (493)
T TIGR02730 391 AKKEADAERIIDRLEKIF-PGL-DSAIDYKEVGTPRTHRRFLGRDSGTYGPIPRRTLPGLLPMPFNRTAIPGLYCVGDSC 468 (493)
T ss_pred HHHHHHHHHHHHHHHHHC-CCh-hhcEEEEEeeCchhHHHHhCCCCcccCCcccccccccccCCCCCCCCCCeEEecCcC
Confidence 478999999999999999 999 9999999999999999999999999988776555432 56899999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHhcc
Q 033665 80 FPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 80 ~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
|||+|++||++||+++|+.++++
T Consensus 469 ~pG~Gv~g~~~sG~~~a~~i~~~ 491 (493)
T TIGR02730 469 FPGQGLNAVAFSGFACAHRVAAD 491 (493)
T ss_pred CCCCCHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 4
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.86 E-value=2e-21 Score=152.43 Aligned_cols=108 Identities=33% Similarity=0.497 Sum_probs=93.9
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCC-CCCCCCCCCcC--C-----CCCCCCCCcEE
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGT-YGPAIQAGKET--F-----PGHSTPIPQLY 73 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~-~G~~~~~~q~~--~-----p~~~t~v~nLy 73 (114)
|.+|+++++++++.+++++ |+| ++.|+..++.||.|.|||++.++|+ |+.+....|.. + .+++|||+|||
T Consensus 441 e~~K~~~ae~~~~~ie~l~-Pgf-sssv~~~dvgTP~t~qr~l~~~~Gn~~~~~~~ld~g~l~~Pv~~~s~y~tPI~~LY 518 (561)
T KOG4254|consen 441 ETKKEAFAERVFSVIEKLA-PGF-SSSVESYDVGTPPTHQRFLGRPGGNIFHGAMGLDQGYLHRPVMAWSNYSTPIPGLY 518 (561)
T ss_pred hHHHHHHHHHHHHHHHHHc-CCc-cceEEEEecCCCchhhHHhcCCCCcccCcccccccccccCCccccccCCCCCCceE
Confidence 5689999999999999998 999 8999999999999999999999999 77655555532 2 34699999999
Q ss_pred EcCCCCCCCCChhHHHHHHHHHHHHHhcccchHHHHHhhc
Q 033665 74 CCGDSTFPGIGVPAVAASGAIVANSLVSVSQHSELLDAIR 113 (114)
Q Consensus 74 l~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~~~~~~~~~~~ 113 (114)
+||+++|||+||+++ .|+++|.....+.++...++.|+
T Consensus 519 lcGs~afPGgGV~a~--aG~~~A~~a~~~~~~~~~l~nl~ 556 (561)
T KOG4254|consen 519 LCGSGAFPGGGVMAA--AGRLAAHSAILDRKLYSDLKNLD 556 (561)
T ss_pred EecCCCCCCCCcccc--chhHHHHHHhhhhhhHHHhhhhc
Confidence 999999999999997 59999999999888766666654
No 5
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.76 E-value=3.1e-18 Score=136.71 Aligned_cols=98 Identities=37% Similarity=0.414 Sum_probs=85.7
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCC-CCCCCCCCCcCC--CCC-CCCCCcEEEcCC
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGT-YGPAIQAGKETF--PGH-STPIPQLYCCGD 77 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~-~G~~~~~~q~~~--p~~-~t~v~nLyl~G~ 77 (114)
++.|+++++. ++.+++.+ |++ +++|+.+++.||.|++++++.++|+ ||..++..|..+ |.+ +||++|||+||+
T Consensus 381 ~~~~~~~~~~-~~~~~~~~-p~~-~~~iv~~~~~tp~~~e~~~~~~~G~~~~~~~~~~q~~~~rp~~~~t~i~~LYl~Ga 457 (487)
T COG1233 381 DELKESLADA-IDALEELA-PGL-RDRIVAREVLTPLDLERYLGLPGGDIFGGAHTLDQLGPFRPPPKSTPIKGLYLVGA 457 (487)
T ss_pred HHHHHHHHHH-HHHHhhcC-CCc-ccceeEEEEeChHHHHHhcCCCCCcccchhcChhhhcCCCCCCCCCCcCceEEeCC
Confidence 4678889998 88899999 999 9999999999999999999999999 999999999754 444 689999999999
Q ss_pred CCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 78 STFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 78 ~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
++|||+|++++..++..++..+..+
T Consensus 458 ~t~PG~Gv~g~~g~~~a~~~~~~~~ 482 (487)
T COG1233 458 STHPGGGVPGVPGSAAAVALLIDLD 482 (487)
T ss_pred cCCCCCCcchhhhhHHHHHhhhccc
Confidence 9999999999877776666666554
No 6
>PLN02612 phytoene desaturase
Probab=98.82 E-value=1.3e-08 Score=83.06 Aligned_cols=89 Identities=19% Similarity=0.164 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCC-----Cc-eeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCC
Q 033665 4 LSVLKYCVIWRAVERALGPGFCR-----DK-CDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGD 77 (114)
Q Consensus 4 ~K~~~~~~il~~l~~~~gP~i~~-----~~-I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~ 77 (114)
-++++.+.+++.|++.+ |+... .+ +.+..+.+|.++.++ .+++.. . .|..++|++|||+||+
T Consensus 453 sdeei~e~vl~~L~~lf-p~~~~~~~~~~~i~~~~~v~~P~a~~~~--~pg~~~--------~-rp~~~tPi~~l~lAGd 520 (567)
T PLN02612 453 SDEDIIDATMKELAKLF-PDEISADQSKAKILKYHVVKTPRSVYKT--VPNCEP--------C-RPLQRSPIEGFYLAGD 520 (567)
T ss_pred CHHHHHHHHHHHHHHHC-CcccccccCCceEEEEEEeccCCceEEe--CCCCcc--------c-CccccCccCCEEEeec
Confidence 47899999999999999 76412 22 445778899887432 222221 0 1556889999999999
Q ss_pred CCCCC--CChhHHHHHHHHHHHHHhcccc
Q 033665 78 STFPG--IGVPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 78 ~~~PG--~Gv~ga~~sg~~~a~~i~~~~~ 104 (114)
++.++ +++.||+.||+.||+.|+++..
T Consensus 521 ~t~~~~~~smeGAv~SG~~AA~~I~~~~~ 549 (567)
T PLN02612 521 YTKQKYLASMEGAVLSGKLCAQSIVQDYE 549 (567)
T ss_pred ceeCCchhhHHHHHHHHHHHHHHHHHHhc
Confidence 99765 6899999999999999997653
No 7
>PLN02487 zeta-carotene desaturase
Probab=98.42 E-value=1.8e-06 Score=70.82 Aligned_cols=89 Identities=17% Similarity=0.215 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCC-CCCCCCCCcEEEcCCCC---
Q 033665 4 LSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETF-PGHSTPIPQLYCCGDST--- 79 (114)
Q Consensus 4 ~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~-p~~~t~v~nLyl~G~~~--- 79 (114)
-.+++.+++.+.|++.+ |.+....+....+.. .+...|-. .+.+..+ |..+||++|||++|||+
T Consensus 463 ~~~ei~~~~~~~L~~~~-p~~~~~~v~~~~vv~---------~~~at~~~--~pg~~~~RP~~~T~~~nl~LAGD~t~~~ 530 (569)
T PLN02487 463 SNDKIVEKVHKQVLELF-PSSRGLEVTWSSVVK---------IGQSLYRE--APGMDPFRPDQKTPISNFFLAGSYTKQD 530 (569)
T ss_pred CHHHHHHHHHHHHHHhC-cccccCceEEEEEEE---------ccCceecc--CCCccccCCCCCCCCCCEEEeCcccccC
Confidence 46889999999999999 988233355433332 11111311 2222223 88899999999999997
Q ss_pred CCCCChhHHHHHHHHHHHHHhcccch
Q 033665 80 FPGIGVPAVAASGAIVANSLVSVSQH 105 (114)
Q Consensus 80 ~PG~Gv~ga~~sg~~~a~~i~~~~~~ 105 (114)
+| ..+-||+.||+.||+.+++....
T Consensus 531 yP-at~EgAv~SG~~AA~~i~~~~~~ 555 (569)
T PLN02487 531 YI-DSMEGATLSGRQAAAYICEAGEE 555 (569)
T ss_pred Cc-chHHHHHHHHHHHHHHHHHHhhh
Confidence 54 37889999999999999887643
No 8
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=98.41 E-value=1.4e-07 Score=71.39 Aligned_cols=89 Identities=28% Similarity=0.394 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHHHhCCC--CCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCc-CCCCCCCCC-CcEEEcCCCCC
Q 033665 5 SVLKYCVIWRAVERALGPG--FCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKE-TFPGHSTPI-PQLYCCGDSTF 80 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~--i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~-~~p~~~t~v-~nLyl~G~~~~ 80 (114)
++++.+.+++.+++.+ |. . .+-+..... .|.+ ...+.|+|+........ .++..++|+ +|||+||++++
T Consensus 356 ~e~~~~~~~~~L~~~~-~~~~~-~~~~~~~~~----~w~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aG~~~~ 428 (450)
T PF01593_consen 356 DEEILERVLDDLRKIL-PGASI-PDPIDITVT----RWSR-DPYPRGSYSYFPPGQSSQFRPALRTPIDPGLYFAGDWTS 428 (450)
T ss_dssp HHHHHHHHHHHHHHHH-TTGGG-GEESEEEEE----ECTT-STTTSSSCECHCTTHHHHHHHHHHSCBTTTEEE-SGGGS
T ss_pred hhhhHHHHHHHhhhcc-ccccc-ccccccccc----cccc-ccccccccccccccccccccccccCCcceEEEEeecccC
Confidence 5789999999999999 72 2 221111111 0111 01223333221111111 124556777 79999999999
Q ss_pred CC--CChhHHHHHHHHHHHHHh
Q 033665 81 PG--IGVPAVAASGAIVANSLV 100 (114)
Q Consensus 81 PG--~Gv~ga~~sg~~~a~~i~ 100 (114)
|+ +|++||+.||+.||+.|+
T Consensus 429 ~~~~~~~~gA~~sG~~aA~~il 450 (450)
T PF01593_consen 429 PGYPGGIEGAILSGRRAAEEIL 450 (450)
T ss_dssp SSSTTSHHHHHHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhC
Confidence 88 799999999999999986
No 9
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.34 E-value=2.3e-06 Score=68.48 Aligned_cols=85 Identities=19% Similarity=0.153 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCc-CCCCCCCCCCcEEEcCCCCCCC
Q 033665 4 LSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKE-TFPGHSTPIPQLYCCGDSTFPG 82 (114)
Q Consensus 4 ~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~-~~p~~~t~v~nLyl~G~~~~PG 82 (114)
-.+++.+++.+.|++.+ |++....++...+.. .+...|-..+ ... ..|..+|+++|||+||||+..+
T Consensus 387 ~~~~l~~~~~~~L~~~~-p~~~~~~~~~~~v~~---------~~~a~~~~~p--g~~~~~P~~~t~~~~l~lAGD~t~~~ 454 (474)
T TIGR02732 387 SNEEIAKRVDKQVRALF-PSSKNLKLTWSSVVK---------LAQSLYREAP--GMDPFRPDQKTPISNFFLAGSYTQQD 454 (474)
T ss_pred CHHHHHHHHHHHHHHhC-ccccCCceeEEEEEE---------ecCceeccCC--CCcccCCCCCCCCCCeEEeccccccC
Confidence 46789999999999999 987233344321211 1111122111 111 1288899999999999997532
Q ss_pred --CChhHHHHHHHHHHHHHh
Q 033665 83 --IGVPAVAASGAIVANSLV 100 (114)
Q Consensus 83 --~Gv~ga~~sg~~~a~~i~ 100 (114)
.++-||+.||+.||+.++
T Consensus 455 ~pas~egAv~sG~~aA~~i~ 474 (474)
T TIGR02732 455 YIDSMEGATLSGRQAAAAIL 474 (474)
T ss_pred chHHHhHHHHHHHHHHHHhC
Confidence 478899999999999874
No 10
>PRK07233 hypothetical protein; Provisional
Probab=98.23 E-value=6.4e-06 Score=63.80 Aligned_cols=88 Identities=19% Similarity=0.223 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCC--CC
Q 033665 4 LSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDST--FP 81 (114)
Q Consensus 4 ~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~--~P 81 (114)
.++++.+.+++.+++.+ |++....++...+.. + ....+.|... .+...+..+++++|||+||++. .+
T Consensus 341 ~~~~~~~~~~~~L~~~~-p~~~~~~~~~~~~~r------~-~~a~~~~~~g---~~~~~~~~~~~~~~l~~aG~~~~~~~ 409 (434)
T PRK07233 341 SDEELLDRFLSYLRKMF-PDFDRDDVRAVRISR------A-PYAQPIYEPG---YLDKIPPYDTPIEGLYLAGMSQIYPE 409 (434)
T ss_pred CHHHHHHHHHHHHHHhC-CCCChhheeeEEEEE------e-ccccccccCc---hhhcCCCcccCcCCEEEeCCcccCCc
Confidence 46789999999999998 988333455554432 1 0001112110 0111255677899999999963 34
Q ss_pred CCChhHHHHHHHHHHHHHhcc
Q 033665 82 GIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 82 G~Gv~ga~~sg~~~a~~i~~~ 102 (114)
+.++.+|+.||+.||+.+++.
T Consensus 410 ~~~~~~Ai~sG~~aA~~i~~~ 430 (434)
T PRK07233 410 DRSINGSVRAGRRVAREILED 430 (434)
T ss_pred cCchhHHHHHHHHHHHHHhhh
Confidence 569999999999999999765
No 11
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.16 E-value=6.6e-06 Score=64.83 Aligned_cols=84 Identities=21% Similarity=0.318 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCC-----CCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCC
Q 033665 4 LSVLKYCVIWRAVERALGPGF-----CRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDS 78 (114)
Q Consensus 4 ~K~~~~~~il~~l~~~~gP~i-----~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~ 78 (114)
-++++.+.+++.|++++ |+. ..+.+.+..+..|.+. |... .|.. ...|..++|++|||++|++
T Consensus 362 ~~ee~~~~v~~~L~~~~-~~~~~~~~~~~~~~~~~~~~p~a~--~~~~----pg~~-----~~~~~~~~p~~~l~~AG~~ 429 (453)
T TIGR02731 362 SDEEIIDATMAELAKLF-PNHIKADSPAKILKYKVVKTPRSV--YKTT----PGRQ-----QYRPHQKTPIPNFFLAGDY 429 (453)
T ss_pred CHHHHHHHHHHHHHHhC-CcccCCCCCceEEEEEEEECCCce--eccC----CCCh-----hhCccccCccCCEEEeehh
Confidence 47889999999999999 642 0124555666666652 2111 1111 0125667889999999988
Q ss_pred C---CCCCChhHHHHHHHHHHHHHh
Q 033665 79 T---FPGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 79 ~---~PG~Gv~ga~~sg~~~a~~i~ 100 (114)
+ +|| .+.||+.||+.||+.|+
T Consensus 430 ~a~~~~g-~~egAi~SG~~AA~~v~ 453 (453)
T TIGR02731 430 TKQKYLA-SMEGAVLSGKLCAQAIV 453 (453)
T ss_pred ccCcccc-cHHHHHHHHHHHHHHhC
Confidence 7 655 89999999999999875
No 12
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=98.16 E-value=5.1e-06 Score=63.89 Aligned_cols=86 Identities=24% Similarity=0.264 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCCCCC--
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPG-- 82 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~PG-- 82 (114)
++++.+.+++.+++.+ |+.....++...+. ....+.|...+...+. .|..++|++|||+||+++++|
T Consensus 332 ~e~~~~~~l~~l~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~~g~~~~-~~~~~~~~~~l~~aGd~~~~~~~ 400 (419)
T TIGR03467 332 REELADRIVAELRRAF-PRVAGAKPLWARVI---------KEKRATFAATPGLNRL-RPGARTPWPNLFLAGDWTATGWP 400 (419)
T ss_pred HHHHHHHHHHHHHHhc-CccccCCccceEEE---------EccCCccccCCccccc-CCCCCCCcCCEEEecccccCCCc
Confidence 6789999999999999 75512233222111 1112223221111111 144567899999999999864
Q ss_pred CChhHHHHHHHHHHHHHhc
Q 033665 83 IGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 83 ~Gv~ga~~sg~~~a~~i~~ 101 (114)
+-+-||+.||..+|+.|++
T Consensus 401 ~~~egA~~SG~~aA~~i~~ 419 (419)
T TIGR03467 401 ATMEGAVRSGYQAAEAVLK 419 (419)
T ss_pred chHHHHHHHHHHHHHHHhC
Confidence 2455899999999998864
No 13
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.46 E-value=0.00016 Score=56.46 Aligned_cols=84 Identities=19% Similarity=0.345 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcC-C-CCCCCCCCcEEEcCCCCCCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKET-F-PGHSTPIPQLYCCGDSTFPG 82 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~-~-p~~~t~v~nLyl~G~~~~PG 82 (114)
++++.+.+++.+++.+| + .+..+...+.. |..-+.. |+.... .+.. + +.... ++|||++|+|+. |
T Consensus 365 ~~~~~~~~~~~L~~~~g--~-~~~~~~~~~~r---w~~a~p~----~~~~~~-~~~~~l~~~l~~-~~~l~~aG~~~~-g 431 (451)
T PRK11883 365 DEELVAFVLADLSKVMG--I-TGDPEFTIVQR---WKEAMPQ----YGVGHI-ERVAELRAGLPH-YPGLYVAGASFE-G 431 (451)
T ss_pred HHHHHHHHHHHHHHHhC--C-CCCceEEEEee---cCccCCC----CCccHH-HHHHHHHHhhhh-CCCEEEECcccC-C
Confidence 57889999999999983 3 23333333322 2210000 211110 0110 1 12222 679999999987 8
Q ss_pred CChhHHHHHHHHHHHHHhc
Q 033665 83 IGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 83 ~Gv~ga~~sg~~~a~~i~~ 101 (114)
.|+++++.||+.+|+.++.
T Consensus 432 ~~i~~av~sg~~~a~~i~~ 450 (451)
T PRK11883 432 VGLPDCIAQAKRAAARLLA 450 (451)
T ss_pred ccHHHHHHHHHHHHHHHHh
Confidence 8999999999999999875
No 14
>PLN02676 polyamine oxidase
Probab=96.73 E-value=0.0053 Score=49.51 Aligned_cols=91 Identities=20% Similarity=0.204 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCc-CC-CCCCCCCCcEEEcCCCCCCC-
Q 033665 6 VLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKE-TF-PGHSTPIPQLYCCGDSTFPG- 82 (114)
Q Consensus 6 ~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~-~~-p~~~t~v~nLyl~G~~~~PG- 82 (114)
++..+.+++.+++++|+++ .+-+.+. . .+|.+. ....|+|...+ +.+. .. ...+.|+.+|||+|..+...
T Consensus 379 e~~~~~vl~~L~~~~g~~~-~~p~~~~-~---~~W~~d-p~s~Gsys~~~-pG~~~~~~~~L~~P~gri~FAGe~ts~~~ 451 (487)
T PLN02676 379 SETKAEIMEVLRKMFGPNI-PEATDIL-V---PRWWSN-RFFKGSYSNWP-IGVSRYEFDQIRAPVGRVYFTGEHTSEKY 451 (487)
T ss_pred HHHHHHHHHHHHHHhCCCC-CCcceEE-e---cccCCC-CCCCcccCCCC-CCCChhHHHHHhCCCCceEEecccccccc
Confidence 4567889999999996556 4322222 2 134432 34456665332 2222 11 33456788999999987653
Q ss_pred -CChhHHHHHHHHHHHHHhccc
Q 033665 83 -IGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 83 -~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
+=+.||+.||+.+|+.|++..
T Consensus 452 ~g~~eGA~~SG~RaA~~I~~~l 473 (487)
T PLN02676 452 NGYVHGAYLAGIDTANDLLECI 473 (487)
T ss_pred ccchHHHHHHHHHHHHHHHHHh
Confidence 346799999999999998654
No 15
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.58 E-value=0.0018 Score=51.16 Aligned_cols=87 Identities=20% Similarity=0.329 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCC-CCCCCCCCcEEEcCCCCCCCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETF-PGHSTPIPQLYCCGDSTFPGI 83 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~-p~~~t~v~nLyl~G~~~~PG~ 83 (114)
.+++.+.+++.+++++| + ....+...+.- |... .|. |...+......+ ...+.+.+|||++|++.. |.
T Consensus 373 dee~~~~~~~~L~~~lG--~-~~~p~~~~v~~---W~~a--~P~--y~~~~~~~~~~~~~~l~~~~~~l~~aG~~~~-g~ 441 (463)
T PRK12416 373 EEELVRVALYDIEKSLG--I-KGEPEVVEVTN---WKDL--MPK--YHLEHNQAVQSLQEKMMNLYPNIYLAGASYY-GV 441 (463)
T ss_pred HHHHHHHHHHHHHHHhC--C-CCCceEEEEEE---cccc--CCC--cCcCHHHHHHHHHHHHHhhCCCeEEeccccc-cc
Confidence 47789999999999983 4 33333333332 2221 122 211110000000 112234689999999987 99
Q ss_pred ChhHHHHHHHHHHHHHhcc
Q 033665 84 GVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 84 Gv~ga~~sg~~~a~~i~~~ 102 (114)
|+++++.||+.+|+.|+..
T Consensus 442 ~i~~ai~sg~~aA~~i~~~ 460 (463)
T PRK12416 442 GIGACIGNGKNTANEIIAT 460 (463)
T ss_pred cHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999743
No 16
>PLN02268 probable polyamine oxidase
Probab=96.54 E-value=0.0074 Score=47.32 Aligned_cols=89 Identities=16% Similarity=0.227 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCc-C-CCCCCCCCCcEEEcCCCCCCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKE-T-FPGHSTPIPQLYCCGDSTFPG 82 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~-~-~p~~~t~v~nLyl~G~~~~PG 82 (114)
.++..+.+++.|.+.+ |+. .+.+.+. + ..|.+. ....|+|.... +.+. . .+..+.|+.+|||||+.+...
T Consensus 340 ~~e~~~~v~~~L~~~~-~~~-~~p~~~~-~---~~W~~d-p~~~G~~~~~~-~g~~~~~~~~l~~p~~~l~FAGe~ts~~ 411 (435)
T PLN02268 340 DEAAANFAMSQLKKML-PDA-TEPVQYL-V---SRWGSD-PNSLGCYSYDL-VGKPHDLYERLRAPVDNLFFAGEATSSD 411 (435)
T ss_pred HHHHHHHHHHHHHHHc-CCC-CCccEEE-e---cccCCC-CCCCccCCCCC-CCCCHHHHHHHhCCCCCeEEeeccCCCc
Confidence 4678889999999999 765 3333222 1 123321 23345543321 2221 1 133467788999999997643
Q ss_pred --CChhHHHHHHHHHHHHHhc
Q 033665 83 --IGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 83 --~Gv~ga~~sg~~~a~~i~~ 101 (114)
+-+.||+.||..+|+.|+.
T Consensus 412 ~~g~~eGA~~sG~raA~~v~~ 432 (435)
T PLN02268 412 FPGSVHGAYSTGVMAAEECRM 432 (435)
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 3578999999999999874
No 17
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=96.25 E-value=0.019 Score=45.19 Aligned_cols=87 Identities=15% Similarity=0.261 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCC-CCCCCCCCcEEEcCCCCCCCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETF-PGHSTPIPQLYCCGDSTFPGI 83 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~-p~~~t~v~nLyl~G~~~~PG~ 83 (114)
.+++.+.+++.+.+++ + + +..++...+.. |.. ..|. |...+......+ +-..++.+|||+||+|.. |.
T Consensus 372 ~ee~~~~v~~~L~~~~-g-i-~~~p~~~~v~r---w~~--a~P~--~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~-g~ 440 (462)
T TIGR00562 372 ENEIINIVLRDLKKVL-N-I-NNEPEMLCVTR---WHR--AIPQ--YHVGHDQRLKEARELLESAYPGVFLTGNSFE-GV 440 (462)
T ss_pred HHHHHHHHHHHHHHHh-C-C-CCCCcEEEEeE---ccc--cCCC--CCCChHHHHHHHHHHHHhhCCCEEEeccccC-CC
Confidence 5678999999999988 3 5 44344433322 111 1111 211110000000 111234579999999987 89
Q ss_pred ChhHHHHHHHHHHHHHhcc
Q 033665 84 GVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 84 Gv~ga~~sg~~~a~~i~~~ 102 (114)
|+.+++.+|+.+|+.+++.
T Consensus 441 ~i~~~i~sg~~~a~~~~~~ 459 (462)
T TIGR00562 441 GIPDCIDQGKAAASDVLTF 459 (462)
T ss_pred cHHHHHHHHHHHHHHHHHh
Confidence 9999999999999998653
No 18
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.11 E-value=0.011 Score=48.01 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCC--CCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDST--FPG 82 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~--~PG 82 (114)
.++......+.++..+ |.....+.....+.+|..+..+ ..|++ +. .|+..||++||+++|+++ -+-
T Consensus 375 ~~~~~a~~e~~~~~~v-P~~~~a~~~~~~i~~~q~~~~~---~pgs~-------~~-rP~~~Tpv~N~~laGd~~~~~~~ 442 (485)
T COG3349 375 DEAIVATFEKELYELV-PSLAEAKLKSSVLVNQQSLYGL---APGSY-------HY-RPEQKTPIPNLLLAGDYTKQPYL 442 (485)
T ss_pred hhhHHHHHHHHhhhcC-Cchhcccccccceecccccccc---CCCcc-------cc-CCCCCCCccchhhccceeecCCc
Confidence 4555666666666666 7654555555555553333222 12221 11 277889999999999996 233
Q ss_pred CChhHHHHHHHHHHHHHhcccc
Q 033665 83 IGVPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 83 ~Gv~ga~~sg~~~a~~i~~~~~ 104 (114)
+-+.++..||+.||+.++....
T Consensus 443 ~smE~A~~sGl~AA~~v~~~~~ 464 (485)
T COG3349 443 GSMEGATLSGLLAANAILDNLG 464 (485)
T ss_pred CccchhhhhHHHHHHHHHHhhh
Confidence 5677999999999999986543
No 19
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=95.46 E-value=0.012 Score=44.83 Aligned_cols=32 Identities=31% Similarity=0.460 Sum_probs=29.0
Q ss_pred CCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
=-+||+||||++ |+-|.|+.+||..+|..|+.
T Consensus 298 ~~~l~~cGDwc~-GgrVEgA~LSGlAaA~~i~~ 329 (331)
T COG3380 298 ELPLYACGDWCA-GGRVEGAVLSGLAAADHILN 329 (331)
T ss_pred CCceeeeccccc-CcchhHHHhccHHHHHHHHh
Confidence 357999999999 89999999999999999875
No 20
>PLN02576 protoporphyrinogen oxidase
Probab=95.03 E-value=0.027 Score=44.91 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=30.0
Q ss_pred CcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 70 PQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 70 ~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
+|||+||++.. |.|+.+|+.||+.+|+.|+..
T Consensus 455 ~~l~~aG~~~~-g~~i~~ai~sg~~aA~~i~~~ 486 (496)
T PLN02576 455 PGLFLGGNYRG-GVALGKCVESGYEAADLVISY 486 (496)
T ss_pred CCEEEeccccC-CccHHHHHHHHHHHHHHHHHH
Confidence 79999999998 999999999999999999765
No 21
>PLN02568 polyamine oxidase
Probab=93.96 E-value=0.07 Score=43.74 Aligned_cols=34 Identities=26% Similarity=0.182 Sum_probs=27.9
Q ss_pred CcEEEcCCCCCCC--CChhHHHHHHHHHHHHHhccc
Q 033665 70 PQLYCCGDSTFPG--IGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 70 ~nLyl~G~~~~PG--~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
..|||+|..++.. +-+.||+.||..+|++|+...
T Consensus 500 ~~l~FAGEat~~~~~~Tv~GA~~SG~RaA~~i~~~~ 535 (539)
T PLN02568 500 LQLLFAGEATHRTHYSTTHGAYFSGLREANRLLQHY 535 (539)
T ss_pred ccEEEeecccCCCccchHHHHHHHHHHHHHHHHHHh
Confidence 3699999887643 248999999999999998754
No 22
>PLN02976 amine oxidase
Probab=93.92 E-value=0.076 Score=48.46 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcC--CCCCCCCCCc-EEEcCCCCCCC
Q 033665 6 VLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKET--FPGHSTPIPQ-LYCCGDSTFPG 82 (114)
Q Consensus 6 ~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~--~p~~~t~v~n-Lyl~G~~~~PG 82 (114)
++..+.+++.|.+++|+.. ....+...+. .|.+ .....|+|... .+.+.. +.....|+.| |||+|..+.+.
T Consensus 1090 EE~Ve~ALe~LrKlFG~~~-iPdPv~~vvT---rWss-DPySrGSYSy~-~PGs~~~d~d~LAePVggRLFFAGEATS~~ 1163 (1713)
T PLN02976 1090 SDHVNHALMVLRKLFGEAL-VPDPVASVVT---DWGR-DPFSYGAYSYV-AIGASGEDYDILGRPVENCLFFAGEATCKE 1163 (1713)
T ss_pred HHHHHHHHHHHHHHcCccc-ccCcceeEEe---cCCC-CCCcCccccCC-CCCCCchHHHHHhCCCCCcEEEEehhhhCC
Confidence 4567888999999984222 1222222221 1332 13345555322 122211 1123456777 99999876543
Q ss_pred --CChhHHHHHHHHHHHHHhcc
Q 033665 83 --IGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 83 --~Gv~ga~~sg~~~a~~i~~~ 102 (114)
+=+.||+.||..+|+.|+..
T Consensus 1164 ~pGTVHGAIeSG~RAA~eIL~~ 1185 (1713)
T PLN02976 1164 HPDTVGGAMMSGLREAVRIIDI 1185 (1713)
T ss_pred CcchHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999754
No 23
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=93.36 E-value=0.078 Score=45.62 Aligned_cols=94 Identities=12% Similarity=0.116 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcC--CCCCCCCC--CcEEEcCCCC
Q 033665 5 SVLKYCVIWRAVERALGPG-FCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKET--FPGHSTPI--PQLYCCGDST 79 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~-i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~--~p~~~t~v--~nLyl~G~~~ 79 (114)
.++..+.+++.|.+.+||. ......+...+. .|.+- ....|+|.... +.+.. ++....|+ ..|||||..+
T Consensus 579 deE~v~~vL~~Lr~ifgp~~~~vp~P~~~~vt---rW~~D-P~s~GSYS~~~-pG~~~~~~~~LaePv~~GRL~FAGEaT 653 (808)
T PLN02328 579 PVESVKRVLQILRGIFHPKGIVVPDPVQAVCT---RWGKD-CFTYGSYSYVA-VGSSGDDYDILAESVGDGRVFFAGEAT 653 (808)
T ss_pred HHHHHHHHHHHHHHHhCcccccccCcceEEEe---cCCCC-CCcCCCCCCCC-CCCchhHHHHHhccCCCCCEEEEEhhH
Confidence 3567788999999988542 101112211111 13221 12344443221 12211 11123343 3799999987
Q ss_pred CCC--CChhHHHHHHHHHHHHHhccc
Q 033665 80 FPG--IGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 80 ~PG--~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+. +-+.||+.||..+|+.|+...
T Consensus 654 s~~~~GtVhGAi~SGlRAA~eIl~~~ 679 (808)
T PLN02328 654 NKQYPATMHGAFLSGMREAANILRVA 679 (808)
T ss_pred hCCCCeEhHHHHHHHHHHHHHHHHHH
Confidence 642 367899999999999998754
No 24
>PLN02529 lysine-specific histone demethylase 1
Probab=93.11 E-value=0.063 Score=45.71 Aligned_cols=94 Identities=11% Similarity=0.077 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCC-CceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCc-CCCCCCCC-CCcEEEcCCCCC
Q 033665 5 SVLKYCVIWRAVERALGPG-FCR-DKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKE-TFPGHSTP-IPQLYCCGDSTF 80 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~-i~~-~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~-~~p~~~t~-v~nLyl~G~~~~ 80 (114)
.++..+.+++.|.+++||. . . ...+...+ ..|... ....|+|......... .+.....| ..+|||||+.+.
T Consensus 499 deeii~~vl~~L~~ifgp~~~-~vp~Pi~~v~---t~W~~D-P~s~GsYS~~~~g~~~~d~~~La~pv~grL~FAGEaTs 573 (738)
T PLN02529 499 PSTLLHRVLSVLRGIYNPKGI-NVPDPIQTIC---TRWGSD-PLSYGSYSHVRVQSSGSDYDILAESVSGRLFFAGEATT 573 (738)
T ss_pred HHHHHHHHHHHHHHHhCcccc-ccCCceEEEE---ccCCcC-CCCCCCcccCCCCCchhHHHHHhCCCCCCEEEEEHHHh
Confidence 3567888999999988542 2 1 11111111 123331 2345554432211110 01111233 468999999986
Q ss_pred CC--CChhHHHHHHHHHHHHHhccc
Q 033665 81 PG--IGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 81 PG--~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
+. +=+.||+.||..+|+.|+...
T Consensus 574 ~~~pgtVeGAi~SG~RAA~eIl~~l 598 (738)
T PLN02529 574 RQYPATMHGAFLSGLREASRILHVA 598 (738)
T ss_pred CCCCeEeHHHHHHHHHHHHHHHHHH
Confidence 53 357799999999999998653
No 25
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=92.83 E-value=0.23 Score=40.85 Aligned_cols=40 Identities=33% Similarity=0.654 Sum_probs=29.7
Q ss_pred CCCCCCcEEEcCCCC-------CCCCC--hhHHHHHHHHHHHHHhcccc
Q 033665 65 HSTPIPQLYCCGDST-------FPGIG--VPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~-------~PG~G--v~ga~~sg~~~a~~i~~~~~ 104 (114)
...||+|||.+|..+ +||+| +-.++..|++|++.+.+..+
T Consensus 520 ~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 568 (574)
T PRK12842 520 DGTPIAGLYAVGNDRASIMGGNYPGAGITLGPIMTFGYITGRHLAGVAG 568 (574)
T ss_pred CCCCcCCceecccccccCccCCCCCCcccHHHHHHHHHHHHHHHHhhhc
Confidence 456899999999643 44434 66778899999998876643
No 26
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=92.70 E-value=0.42 Score=36.38 Aligned_cols=79 Identities=15% Similarity=0.156 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCCCCCCCh
Q 033665 6 VLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGV 85 (114)
Q Consensus 6 ~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~PG~Gv 85 (114)
++..+.+++.+.+++ |.+ .+ ++... .|.+...+ +...+-+....++|||++.... |.|+
T Consensus 285 ~~~~~~l~~~~~~~~-P~~-~~-~~~~~--------------~g~~~~t~--D~~P~ig~~~~~~gl~~~~G~~--g~G~ 343 (376)
T PRK11259 285 AEDGAELRPFLRNYL-PGV-GP-CLRGA--------------ACTYTNTP--DEHFIIDTLPGHPNVLVASGCS--GHGF 343 (376)
T ss_pred HHHHHHHHHHHHHHC-CCC-Cc-cccce--------------EEecccCC--CCCceeecCCCCCCEEEEeccc--chhh
Confidence 456788888899999 988 55 32211 11111111 1111112222379999996654 6788
Q ss_pred hHHHHHHHHHHHHHhcccch
Q 033665 86 PAVAASGAIVANSLVSVSQH 105 (114)
Q Consensus 86 ~ga~~sg~~~a~~i~~~~~~ 105 (114)
..+-..|+.+|+.|++.+..
T Consensus 344 ~~ap~~g~~la~li~~~~~~ 363 (376)
T PRK11259 344 KFASVLGEILADLAQDGTSD 363 (376)
T ss_pred hccHHHHHHHHHHHhcCCCC
Confidence 88888999999999987644
No 27
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=91.55 E-value=0.52 Score=38.89 Aligned_cols=40 Identities=28% Similarity=0.539 Sum_probs=29.6
Q ss_pred CCCCCCcEEEcCCC-------CCCC--CChhHHHHHHHHHHHHHhcccc
Q 033665 65 HSTPIPQLYCCGDS-------TFPG--IGVPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 65 ~~t~v~nLyl~G~~-------~~PG--~Gv~ga~~sg~~~a~~i~~~~~ 104 (114)
...||+|||.+|.. .+|+ ..+..++.+|++|++.+.+..+
T Consensus 524 ~g~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~~~ 572 (581)
T PRK06134 524 AGQPIPGLYAAGNDMASVMGGFYPSGGITLGPALTFGYIAGRHIAGASG 572 (581)
T ss_pred CCCCcCcceeccccccccccCCcCCcchhHHHHHHHHHHHHHHHhhcCC
Confidence 34689999999953 2443 3466788899999999877543
No 28
>PLN03000 amine oxidase
Probab=91.15 E-value=0.19 Score=43.70 Aligned_cols=93 Identities=11% Similarity=0.124 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHhCCC-CC-CCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcC--CCCCCCCC--CcEEEcCCC
Q 033665 5 SVLKYCVIWRAVERALGPG-FC-RDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKET--FPGHSTPI--PQLYCCGDS 78 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~-i~-~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~--~p~~~t~v--~nLyl~G~~ 78 (114)
.++..+.+++.|++.++|. .. .+-+.+ .+. .|.+. ....|+|.... +.+.. +...+.|+ ..|||+|..
T Consensus 523 deE~ve~vl~~Lrkifg~~~~~vp~Pv~~-ivt---rW~~D-PysrGSYS~~~-pG~~~~~~d~LaePv~~GRIfFAGEa 596 (881)
T PLN03000 523 PTDAVTRVLHILRGIYEPQGINVPDPLQT-VCT---RWGGD-PFSLGSYSNVA-VGASGDDYDILAESVGDGRLFFAGEA 596 (881)
T ss_pred HHHHHHHHHHHHHHHhCccccccCCceEE-EEc---cCCCC-CCCCccccCCC-CCCchHHHHHHhCcCCCCcEEEeehH
Confidence 3567889999999988532 20 222322 221 13322 23456654432 22221 12224455 379999988
Q ss_pred CCC--CCChhHHHHHHHHHHHHHhccc
Q 033665 79 TFP--GIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 79 ~~P--G~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
+.. -+-+.||+.||..+|+.|+...
T Consensus 597 Ts~~~~GTVhGAieSGlRAA~eIl~~l 623 (881)
T PLN03000 597 TTRRYPATMHGAFVTGLREAANMAQSA 623 (881)
T ss_pred HhCCCCeeHHHHHHHHHHHHHHHHHHh
Confidence 642 2467899999999999998764
No 29
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=90.10 E-value=1.2 Score=34.01 Aligned_cols=79 Identities=13% Similarity=0.124 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCCCCCCChh
Q 033665 7 LKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 86 (114)
Q Consensus 7 ~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~PG~Gv~ 86 (114)
...+.+.+.+.+++ |.+ .+..+..... + +...+.+. .+-+....++|||++.... |.|+.
T Consensus 285 ~~~~~l~~~~~~~~-P~l-~~~~~~~~~~----~--~~~t~D~~----------piIg~~p~~~~l~va~G~~--g~G~~ 344 (380)
T TIGR01377 285 EDVQILRKFVRDHL-PGL-NGEPKKGEVC----M--YTNTPDEH----------FVIDLHPKYDNVVIGAGFS--GHGFK 344 (380)
T ss_pred HHHHHHHHHHHHHC-CCC-CCCcceeeEE----E--eccCCCCC----------eeeecCCCCCCEEEEecCC--cccee
Confidence 34677778888998 998 5422211111 0 01122222 0112223479999886554 57888
Q ss_pred HHHHHHHHHHHHHhcccch
Q 033665 87 AVAASGAIVANSLVSVSQH 105 (114)
Q Consensus 87 ga~~sg~~~a~~i~~~~~~ 105 (114)
.+-..|++.|+.|++.+..
T Consensus 345 ~~p~~g~~la~li~~~~~~ 363 (380)
T TIGR01377 345 LAPVVGKILAELAMKLKPS 363 (380)
T ss_pred ccHHHHHHHHHHHhcCCCC
Confidence 7888999999999987654
No 30
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=89.90 E-value=2.5 Score=33.65 Aligned_cols=77 Identities=14% Similarity=0.298 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCC-ceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCCCCCCCh
Q 033665 7 LKYCVIWRAVERALGPGFCRD-KCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGV 85 (114)
Q Consensus 7 ~~~~~il~~l~~~~gP~i~~~-~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~PG~Gv 85 (114)
...+.+.+.+.+++ |.+ ++ .|.+.. .|.+...++. ..+-+.....+|+|++.... |.|+
T Consensus 318 ~~~~~l~~~~~~~f-P~L-~~~~i~~~W--------------~G~~~~t~D~--~P~iG~~~~~~gl~~a~G~~--G~Gv 377 (460)
T TIGR03329 318 PYEALLTRSLRKFF-PAL-AEVPIAASW--------------NGPSDRSVTG--LPFFGRLNGQPNVFYGFGYS--GNGV 377 (460)
T ss_pred HHHHHHHHHHHHhC-CCc-CCCeeeEEE--------------eceeCCCCCC--CceeeeecCCCCEEEEeCcC--CCCh
Confidence 45567888888899 988 44 232221 1222222111 10111112368999986654 7899
Q ss_pred hHHHHHHHHHHHHHhccc
Q 033665 86 PAVAASGAIVANSLVSVS 103 (114)
Q Consensus 86 ~ga~~sg~~~a~~i~~~~ 103 (114)
..+..+|+..|+.+++..
T Consensus 378 ~~a~~~G~~lA~li~g~~ 395 (460)
T TIGR03329 378 APSRMGGQILSSLVLGLD 395 (460)
T ss_pred hHHHHHHHHHHHHhcCCC
Confidence 999999999999998854
No 31
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=89.76 E-value=1.7 Score=32.24 Aligned_cols=77 Identities=12% Similarity=0.076 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCCCCCCChh
Q 033665 7 LKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 86 (114)
Q Consensus 7 ~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~PG~Gv~ 86 (114)
+..+.+++.+.+++ |.++...+. .. ..|-+...++... +.+.....+|+|++.... |.|+.
T Consensus 260 ~~~~~l~~~~~~~~-P~l~~~~~~----------~~----~~g~r~~t~D~~p--iig~~~~~~~~~~~~g~~--g~G~~ 320 (337)
T TIGR02352 260 GGIKELLRDAYTIL-PALKEARLL----------ET----WAGLRPGTPDNLP--YIGEHPEDRRLLIATGHY--RNGIL 320 (337)
T ss_pred HHHHHHHHHHHHhC-CCcccCcHH----------Hh----eecCCCCCCCCCC--EeCccCCCCCEEEEcccc--cCcee
Confidence 45678888999999 988221111 11 1222222211111 112222368999996654 67999
Q ss_pred HHHHHHHHHHHHHhcc
Q 033665 87 AVAASGAIVANSLVSV 102 (114)
Q Consensus 87 ga~~sg~~~a~~i~~~ 102 (114)
.+...|+..|+.|+..
T Consensus 321 ~~p~~g~~la~~i~~~ 336 (337)
T TIGR02352 321 LAPATAEVIADLILGK 336 (337)
T ss_pred hhhHHHHHHHHHHhcC
Confidence 8889999999999865
No 32
>PRK12839 hypothetical protein; Provisional
Probab=89.51 E-value=0.83 Score=37.73 Aligned_cols=38 Identities=32% Similarity=0.613 Sum_probs=28.8
Q ss_pred CCCCCCcEEEcCCCC-------CC--CCChhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDST-------FP--GIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~-------~P--G~Gv~ga~~sg~~~a~~i~~~ 102 (114)
...||+|||.+|..+ +| |..+..++..|++|++.+.+.
T Consensus 521 dg~pIpGLYAAG~~~gg~~g~~Y~~~G~~lg~a~~fGriAg~~aA~~ 567 (572)
T PRK12839 521 DDTPIDGLYAAGNDQASVMGGHYPSGGINLGPAMTFGYIAGRELAGS 567 (572)
T ss_pred CCCCcCCceeccccccccccCCCCCcccchhHHHHHHHHHHHHHHhc
Confidence 446899999999642 33 445677888999999988654
No 33
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.79 E-value=0.96 Score=37.43 Aligned_cols=38 Identities=26% Similarity=0.576 Sum_probs=28.2
Q ss_pred CCCCCCcEEEcCCCC-------CCCCC--hhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDST-------FPGIG--VPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~-------~PG~G--v~ga~~sg~~~a~~i~~~ 102 (114)
...||+|||.+|..+ +||+| +-.++.+|++|++.+.+.
T Consensus 523 ~g~pIpGLYAAGe~~Gg~~g~~Y~g~G~slg~a~~fGriAG~~aa~~ 569 (584)
T PRK12835 523 DDSVIPGLYAVGNTSASVMGRSYAGAGATIGPAMTFGYVAARHAAAV 569 (584)
T ss_pred CCCCccceeeeeecccccccCCCCcCccchHHHHHHHHHHHHHHHHh
Confidence 456899999999553 34433 567788999999988664
No 34
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=88.18 E-value=0.59 Score=37.72 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCC--CCCCCCCCCcCC-CCCCCCCCcEEEcCCCCCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGT--YGPAIQAGKETF-PGHSTPIPQLYCCGDSTFP 81 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~--~G~~~~~~q~~~-p~~~t~v~nLyl~G~~~~P 81 (114)
-|++.+..++.|.+++ +.. .+-+ ... .+....+. |...+.-..... ....+-.+|++.+|.+--
T Consensus 358 dee~~~~~l~~L~~~~-~~~-~~~~-~~~---------v~r~~~~~PqY~vG~~~~~~~ir~~l~~~y~gi~~~G~~~~- 424 (444)
T COG1232 358 DEELVAAVLDDLKKLG-GIN-GDPV-FVE---------VTRWKYAMPQYEVGHLDRLEPIRAALKGAYPGIKSVGRYGE- 424 (444)
T ss_pred HHHHHHHHHHHHHHHc-CcC-cchh-hee---------eeeccccCCccchhHHHHHHHHHHhhccccCCeEEeccCCC-
Confidence 3788999999999997 544 3322 222 22333333 655443322111 122223489999999976
Q ss_pred CCChhHHHHHHHHHHHHHhc
Q 033665 82 GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 82 G~Gv~ga~~sg~~~a~~i~~ 101 (114)
|.|++.++.+|..+++.++.
T Consensus 425 g~g~~d~I~~g~~aa~~l~~ 444 (444)
T COG1232 425 GVGLPDCIAAGKEAAEQLLS 444 (444)
T ss_pred CCCchHHHHHHHHHHHHhhC
Confidence 68999999999999998763
No 35
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=88.04 E-value=3.6 Score=31.83 Aligned_cols=35 Identities=14% Similarity=0.221 Sum_probs=28.6
Q ss_pred CCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcccc
Q 033665 68 PIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 68 ~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~~ 104 (114)
+.+|+|++.... |.|+..+..+|+.+|+.|++.+.
T Consensus 370 ~~~gl~~a~G~~--g~G~~~ap~~g~~la~li~g~~~ 404 (416)
T PRK00711 370 RYKNLWLNTGHG--TLGWTMACGSGQLLADLISGRKP 404 (416)
T ss_pred CCCCEEEecCCc--hhhhhhhhhHHHHHHHHHcCCCC
Confidence 368999985553 67999999999999999987654
No 36
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=88.02 E-value=0.72 Score=37.90 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=29.3
Q ss_pred CCCCCCcEEEcCCCC-------CC--CCChhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDST-------FP--GIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~-------~P--G~Gv~ga~~sg~~~a~~i~~~ 102 (114)
...||+|||.+|..+ +| |.++..++..|++|++.+.+.
T Consensus 503 ~g~pIpGLYAAG~~~gg~~g~~Y~~~G~~l~~a~~~GriAg~~aa~~ 549 (557)
T PRK12844 503 DGSVIPGLYATGNCTASVMGRTYPGAGASIGNSFVFGYIAALHAAGA 549 (557)
T ss_pred CCCCccceeeccccccccccCCCCcCccchHHHHHHHHHHHHHHHhc
Confidence 346899999999653 33 456778889999999888664
No 37
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=87.95 E-value=0.6 Score=37.87 Aligned_cols=38 Identities=26% Similarity=0.510 Sum_probs=28.8
Q ss_pred CCCCCCcEEEcCCCC-------CCC--CChhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDST-------FPG--IGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~-------~PG--~Gv~ga~~sg~~~a~~i~~~ 102 (114)
...||+|||.+|..+ +|+ .++..++..|++|++.+.++
T Consensus 465 ~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~fGriAg~~aa~~ 511 (513)
T PRK12837 465 DGRPIPGLYAAGNTMAAVSGTTYPGGGNPIGASMLFSHLAALDMAGR 511 (513)
T ss_pred CCCEeCCceecccccccccccCCCCCccchHHHHHHHHHHHHHHhcC
Confidence 346899999999863 343 33678889999999988654
No 38
>PRK07121 hypothetical protein; Validated
Probab=87.77 E-value=0.68 Score=37.15 Aligned_cols=37 Identities=22% Similarity=0.446 Sum_probs=28.9
Q ss_pred CCCCCcEEEcCCCC--------CCCCChhHHHHHHHHHHHHHhcc
Q 033665 66 STPIPQLYCCGDST--------FPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 66 ~t~v~nLyl~G~~~--------~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..||+|||.+|..+ .+|.++..++..|++|++.+.+.
T Consensus 446 g~pI~GLYAaG~~~gg~~g~~y~~G~~l~~~~~~GriAg~~aa~~ 490 (492)
T PRK07121 446 GAPIPGLYAAGRCASGIASNGYVSGLSLADCSFFGRRAGRHAAAR 490 (492)
T ss_pred CCCcCceEecccccccCCCCCCCCccccchhHHHHHHHHHHHHhh
Confidence 45899999999653 24667788889999999987653
No 39
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=87.34 E-value=0.58 Score=37.14 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=27.6
Q ss_pred CCCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHhcc
Q 033665 66 STPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 66 ~t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
.+||+|||.+|..+ | .|.++.-++..|++|++.+.+.
T Consensus 415 g~~I~GLYAaGe~~gg~~~g~~y~~g~~l~~~~~~G~iag~~aa~~ 460 (466)
T PRK08274 415 GRPSPNLFAAGEMMAGNVLGKGYPAGVGLTIGAVFGRIAGEEAARH 460 (466)
T ss_pred CCCCCCceecccccccccccCCCccccchhhhhhhHHHHHHHHHHH
Confidence 35899999999653 2 2356777788999998888654
No 40
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=86.92 E-value=5.6 Score=30.77 Aligned_cols=76 Identities=21% Similarity=0.233 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCCc-eeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCCCCCCCh
Q 033665 7 LKYCVIWRAVERALGPGFCRDK-CDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGV 85 (114)
Q Consensus 7 ~~~~~il~~l~~~~gP~i~~~~-I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~PG~Gv 85 (114)
+..+.+++.+.+++ |++ ++. +.... .|.+...++... +-+ ..|.+|||++.... |.|+
T Consensus 310 ~~~~~l~~~~~~~~-P~l-~~~~~~~~w--------------~G~~~~t~D~~P--iIg-~~~~~gl~~a~G~~--g~G~ 368 (407)
T TIGR01373 310 PTLEHVLAAILEMF-PIL-SRVRMLRSW--------------GGIVDVTPDGSP--IIG-KTPLPNLYLNCGWG--TGGF 368 (407)
T ss_pred HHHHHHHHHHHHhC-CCc-CCCCeEEEe--------------ccccccCCCCCc--eeC-CCCCCCeEEEeccC--Ccch
Confidence 35677888888898 998 542 22111 122222211111 111 12368999986544 6788
Q ss_pred hHHHHHHHHHHHHHhccc
Q 033665 86 PAVAASGAIVANSLVSVS 103 (114)
Q Consensus 86 ~ga~~sg~~~a~~i~~~~ 103 (114)
..+-..|+++|+.++..+
T Consensus 369 ~~ap~~G~~la~li~~~~ 386 (407)
T TIGR01373 369 KATPASGTVFAHTLARGE 386 (407)
T ss_pred hhchHHHHHHHHHHhCCC
Confidence 888889999999998654
No 41
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=86.61 E-value=0.83 Score=35.98 Aligned_cols=37 Identities=19% Similarity=0.384 Sum_probs=27.2
Q ss_pred CCCCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
...||||||.+|..+ | .|.++..++..|++|++.+.+
T Consensus 383 ~g~~I~GLYAaG~~~~g~~~g~~y~~G~~~~~a~~~GriAg~~aa~ 428 (432)
T TIGR02485 383 DAVAPDNLFAAGTNMAGNVLGQGYLAGAGLTIAAVFGRIAGRAAAR 428 (432)
T ss_pred CCCCCCCeeecccccccccccCCCccchhhHHHHHHHHHHHHHHHH
Confidence 445899999999642 2 245677788889999887754
No 42
>PRK12831 putative oxidoreductase; Provisional
Probab=86.55 E-value=0.93 Score=36.38 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=30.0
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+.....+.-|+..|+.||..|.+
T Consensus 422 ~~Ts~pgVfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~ 458 (464)
T PRK12831 422 GLTSKEGVFAGGDAVTGAATVILAMGAGKKAAKAIDE 458 (464)
T ss_pred CccCCCCEEEeCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 4678999999999987334667888899999988754
No 43
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=86.53 E-value=0.89 Score=37.50 Aligned_cols=38 Identities=26% Similarity=0.574 Sum_probs=26.5
Q ss_pred CCCCCCcEEEcCCCC-------CCCCC--hhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDST-------FPGIG--VPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~-------~PG~G--v~ga~~sg~~~a~~i~~~ 102 (114)
...||+|||.+|..+ +|++| +..++..|++|++.+.+.
T Consensus 525 dg~pIpGLYAaG~~~gg~~g~~y~~~G~~lg~a~~fGriAg~~aa~~ 571 (578)
T PRK12843 525 DGQPISGLYACGNDMASIMGGTYPGPGITLGPAIVFAYLAARHAAKR 571 (578)
T ss_pred CCCCcCCceeccccccccccCCCCCcccchHHHHHHHHHHHHHHHHh
Confidence 456899999999443 34434 445778899988887654
No 44
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=86.48 E-value=0.6 Score=37.89 Aligned_cols=39 Identities=31% Similarity=0.332 Sum_probs=33.6
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
..|.++|||.+|+++--.+|+..|...|..+|+.|..+.
T Consensus 445 ~~t~i~gLy~aGdGAG~argI~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 445 LSTSIKGLYPAGDGAGLARGIVSAAADGIKAAEGIARKY 483 (486)
T ss_pred ceeeecceEEccccccccchhHHHhhhhHHHHHHHHHHh
Confidence 457799999999998657899999999999999998753
No 45
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=86.21 E-value=0.7 Score=37.79 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=25.5
Q ss_pred CCCCcEEEcCCCCC---------CCCChhHHHHHHHHHHHHHh
Q 033665 67 TPIPQLYCCGDSTF---------PGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 67 t~v~nLyl~G~~~~---------PG~Gv~ga~~sg~~~a~~i~ 100 (114)
|+|+|||.+|..+- .|.++..++..|+.|++.+.
T Consensus 357 t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa 399 (566)
T TIGR01812 357 TIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAA 399 (566)
T ss_pred cccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHH
Confidence 89999999999642 12456677778888887764
No 46
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=86.12 E-value=5 Score=33.41 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=25.1
Q ss_pred CCCCCCCcEEEcCCCC---C-----CCCChhHHHHHHHHHHHHHh
Q 033665 64 GHSTPIPQLYCCGDST---F-----PGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~---~-----PG~Gv~ga~~sg~~~a~~i~ 100 (114)
..+|.|+|||.+|..+ | .|.++..++..|+.|++.+.
T Consensus 378 ~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa 422 (603)
T TIGR01811 378 DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTI 422 (603)
T ss_pred CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 3468899999999963 3 12355566677777766543
No 47
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=85.92 E-value=0.84 Score=37.31 Aligned_cols=35 Identities=26% Similarity=0.427 Sum_probs=26.1
Q ss_pred CCCCCcEEEcCCCCC------------CCCChhHHHHHHHHHHHHHh
Q 033665 66 STPIPQLYCCGDSTF------------PGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 66 ~t~v~nLyl~G~~~~------------PG~Gv~ga~~sg~~~a~~i~ 100 (114)
-.||||||.+|..+- +|..+..++.+|++|++.+.
T Consensus 501 g~pIpGLYAaG~~~g~~~~g~~g~~~~~G~~lg~a~~~GriAg~~aa 547 (549)
T PRK12834 501 GTPLPGLYAAGEAAGFGGGGVHGYNALEGTFLGGCIFSGRAAGRAAA 547 (549)
T ss_pred CCEeCCeeeceecccccCCCcCCccccccchHHHHHHHHHHHHHHHh
Confidence 468999999998851 14456677888999988764
No 48
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=85.60 E-value=0.95 Score=36.96 Aligned_cols=38 Identities=29% Similarity=0.512 Sum_probs=26.4
Q ss_pred CCCCCCCcEEEcCCCC---CC-----CCChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDST---FP-----GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~---~P-----G~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|+|||||.+|..+ |. |.++..++..|++|++.+.+
T Consensus 356 ~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~ 401 (543)
T PRK06263 356 DCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAK 401 (543)
T ss_pred CCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHH
Confidence 3578999999999853 21 23455677778888777653
No 49
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=85.52 E-value=0.99 Score=36.31 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCCCCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|+|+|||.||..+ | .|.++..++..|+.|++.+.+
T Consensus 341 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 387 (488)
T TIGR00551 341 HGRTTVPGLYAIGEVACTGLHGANRLASNSLLECLVFGWSAAEDISR 387 (488)
T ss_pred CCcccCCCEEECccccccccCcccccchhHHHHHHHHHHHHHHHHHh
Confidence 3578999999999974 2 123456667788888888754
No 50
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=85.04 E-value=1 Score=37.27 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=25.9
Q ss_pred CCCCCCCcEEEcCCCCC-C--------CCChhHHHHHHHHHHHHHh
Q 033665 64 GHSTPIPQLYCCGDSTF-P--------GIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~-P--------G~Gv~ga~~sg~~~a~~i~ 100 (114)
..+|+|||||.+|..+- . |.++..++..|+.|++.+.
T Consensus 366 ~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 411 (582)
T PRK09231 366 NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAA 411 (582)
T ss_pred CCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 35789999999998641 1 2346667777888777664
No 51
>PRK06116 glutathione reductase; Validated
Probab=85.03 E-value=1.6 Score=34.58 Aligned_cols=39 Identities=26% Similarity=0.355 Sum_probs=31.5
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|.++|+|.+||.+.+..-.+-|+..|+.+|+.+++..
T Consensus 291 ~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 329 (450)
T PRK06116 291 QNTNVPGIYAVGDVTGRVELTPVAIAAGRRLSERLFNNK 329 (450)
T ss_pred CCcCCCCEEEEeecCCCcCcHHHHHHHHHHHHHHHhCCC
Confidence 478899999999998544556677889999999998743
No 52
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.02 E-value=1.3 Score=37.07 Aligned_cols=37 Identities=22% Similarity=0.285 Sum_probs=30.3
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+.+..-+.-|+..|+.||..|.+
T Consensus 613 ~~Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~ 649 (654)
T PRK12769 613 YQTSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIID 649 (654)
T ss_pred cccCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 4678999999999987444557888999999998864
No 53
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=84.97 E-value=1.1 Score=36.78 Aligned_cols=38 Identities=18% Similarity=0.386 Sum_probs=28.2
Q ss_pred CCCCCCcEEEcCCCC-------CCC--CChhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDST-------FPG--IGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~-------~PG--~Gv~ga~~sg~~~a~~i~~~ 102 (114)
...||+|||.+|..+ +|| ..+..++.+|++|++.+.++
T Consensus 510 ~g~pIpGLYAaG~~~gg~~g~~Y~~~G~~~~~a~~~GriAg~~aa~~ 556 (557)
T PRK07843 510 DGSVIEGLYAAGNVSAPVMGHTYAGPGATIGPAMTFGYLAALDIAAQ 556 (557)
T ss_pred CCCCcCCceeccccccccccCCcCccccchhhHHHHHHHHHHHHhhc
Confidence 446899999999875 333 34556788999999987653
No 54
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=84.97 E-value=1.1 Score=32.68 Aligned_cols=37 Identities=24% Similarity=0.249 Sum_probs=28.6
Q ss_pred CCCCCCcEEEcCCCCC-CCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~-PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|..+|+|.+||.+. +..-+.-|+..|+.||..+..
T Consensus 261 ~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 298 (300)
T TIGR01292 261 MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAER 298 (300)
T ss_pred CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHh
Confidence 4677999999999986 234466778899999987753
No 55
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=84.79 E-value=1.4 Score=35.09 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=29.3
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+....-+.-|+..|+.+|..|.+
T Consensus 411 ~~Ts~~~VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 411 QRTSIPGVFAGGDIILGAATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred CccCCCCEEEecCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999986333466788899999988753
No 56
>PLN02507 glutathione reductase
Probab=84.71 E-value=1.7 Score=35.19 Aligned_cols=40 Identities=23% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 63 PGHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 63 p~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
...+|.++|+|.+||.+..-.-.+.|...|+.+++.+++.
T Consensus 324 ~~~~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 324 EYSRTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred CCCcCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 3457889999999999975566778888999999999864
No 57
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=84.69 E-value=1.4 Score=35.33 Aligned_cols=38 Identities=21% Similarity=0.183 Sum_probs=30.1
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
.+|.++|+|.+||.+.+..-+..|+..|+.||..|.+.
T Consensus 426 ~~Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~ 463 (471)
T PRK12810 426 YQTSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAY 463 (471)
T ss_pred ccCCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 35789999999999974345677888999999887543
No 58
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=84.00 E-value=1.2 Score=37.29 Aligned_cols=35 Identities=14% Similarity=0.329 Sum_probs=24.9
Q ss_pred CCCCCcEEEcCCCC---C-----CCCChhHHHHHHHHHHHHHh
Q 033665 66 STPIPQLYCCGDST---F-----PGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 66 ~t~v~nLyl~G~~~---~-----PG~Gv~ga~~sg~~~a~~i~ 100 (114)
+|+|+|||.||..+ | +|.++..++..|+.|++.+.
T Consensus 402 ~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa 444 (626)
T PRK07803 402 AATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAA 444 (626)
T ss_pred eeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHH
Confidence 47899999999854 1 34456677777888766553
No 59
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.99 E-value=1.4 Score=36.56 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=25.5
Q ss_pred CCCCcEEEcCCCCC---CC------CChhHHHHHHHHHHHHHhc
Q 033665 67 TPIPQLYCCGDSTF---PG------IGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 67 t~v~nLyl~G~~~~---PG------~Gv~ga~~sg~~~a~~i~~ 101 (114)
|+|+|||.+|..+- -| .++..++..|+.|++.+.+
T Consensus 383 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~ 426 (598)
T PRK09078 383 AVVPGLMAVGEAACVSVHGANRLGSNSLIDLVVFGRAAALRAAE 426 (598)
T ss_pred CccCceeecccccccCCcCcccccchhHHHHHHHHHHHHHHHHH
Confidence 68999999999742 12 3566777888888877643
No 60
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=83.85 E-value=1.9 Score=34.20 Aligned_cols=39 Identities=26% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..+|.++|+|.+||.+.+..=.+-|+..|+.+++.+++.
T Consensus 288 ~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 288 YSRTSIPSIYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred CCccCCCCEEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 457889999999999975455567788999999998864
No 61
>PRK13984 putative oxidoreductase; Provisional
Probab=83.83 E-value=1.3 Score=36.59 Aligned_cols=36 Identities=28% Similarity=0.335 Sum_probs=30.6
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+. +..+.-|+..|+.||..|.+
T Consensus 564 ~~Ts~~gVfAaGD~~~-~~~~v~Ai~~G~~AA~~I~~ 599 (604)
T PRK13984 564 GQTSIPWLFAGGDIVH-GPDIIHGVADGYWAAEGIDM 599 (604)
T ss_pred CccCCCCEEEecCcCC-chHHHHHHHHHHHHHHHHHH
Confidence 5688999999999997 66778888999999988754
No 62
>PRK08275 putative oxidoreductase; Provisional
Probab=83.61 E-value=1.1 Score=36.71 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=27.5
Q ss_pred CCCCCCCcEEEcCCCCC-CCCChhHHHHHHHHHHHHHh
Q 033665 64 GHSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~-PG~Gv~ga~~sg~~~a~~i~ 100 (114)
..+|.++|||.||+.+. +...+..++..|+.|+..+.
T Consensus 364 ~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~ 401 (554)
T PRK08275 364 KAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAA 401 (554)
T ss_pred CCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 35788999999999854 34567777777887777654
No 63
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=83.59 E-value=6.1 Score=30.59 Aligned_cols=76 Identities=16% Similarity=0.124 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCCCCCCChh
Q 033665 7 LKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 86 (114)
Q Consensus 7 ~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~PG~Gv~ 86 (114)
+..+.+++.+.+++ |++ ++..+. .| .|.+...++. ..+-+ +.+.+|||++-... +.|+.
T Consensus 332 ~~~~~l~~~~~~~~-P~l-~~~~~~----------~w----~G~r~~t~D~--~PiiG-~~~~~~l~~~~G~~--~~G~~ 390 (410)
T PRK12409 332 DRIRPLVDWVRRNF-PDV-STRRVV----------PW----AGLRPMMPNM--MPRVG-RGRRPGVFYNTGHG--HLGWT 390 (410)
T ss_pred HHHHHHHHHHHHhC-CCC-Cccccc----------ee----cccCCCCCCC--CCeeC-CCCCCCEEEecCCc--ccchh
Confidence 46778888899999 999 543211 11 2222111111 10101 12369999886542 56999
Q ss_pred HHHHHHHHHHHHHhccc
Q 033665 87 AVAASGAIVANSLVSVS 103 (114)
Q Consensus 87 ga~~sg~~~a~~i~~~~ 103 (114)
.+...|+..|+.+++..
T Consensus 391 ~ap~~g~~lA~~i~~~~ 407 (410)
T PRK12409 391 LSAATADLVAQVVAQKL 407 (410)
T ss_pred hcccHHHHHHHHHcCCC
Confidence 99999999999997654
No 64
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.46 E-value=1.5 Score=36.21 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=24.4
Q ss_pred CCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHh
Q 033665 67 TPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 67 t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~ 100 (114)
++|||||.||..+ | .|.++..++..|+.|++.+.
T Consensus 360 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 402 (570)
T PRK05675 360 QIIPGLFAVGEVACVSVHGANRLGGNSLLDLVVFGRAAGLHLE 402 (570)
T ss_pred CccCCeeecccccccCCCCccccccccHHHHHHHHHHHHHHHH
Confidence 5799999999864 2 12346677788888887654
No 65
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=83.29 E-value=1.3 Score=36.63 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=25.3
Q ss_pred CCCCCCcEEEcCCCC---C-----CCCChhHHHHHHHHHHHHHh
Q 033665 65 HSTPIPQLYCCGDST---F-----PGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~---~-----PG~Gv~ga~~sg~~~a~~i~ 100 (114)
.+|+|+|||.+|..+ | .|.++..++..|+.|++.+.
T Consensus 364 ~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa 407 (589)
T PRK08641 364 QMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAV 407 (589)
T ss_pred CCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHH
Confidence 578899999999864 2 23356667777877766553
No 66
>PRK06175 L-aspartate oxidase; Provisional
Probab=83.02 E-value=1.2 Score=35.31 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=26.9
Q ss_pred CCCCCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|+|||||.+|..+ | .|.++.-++..|+.|++.+-.
T Consensus 339 ~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~ 385 (433)
T PRK06175 339 NSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINS 385 (433)
T ss_pred CccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999974 2 123355667788888887643
No 67
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=83.01 E-value=1.4 Score=36.32 Aligned_cols=37 Identities=24% Similarity=0.446 Sum_probs=26.9
Q ss_pred CCCCCCcEEEcCCCC-------CC--CCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDST-------FP--GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~-------~P--G~Gv~ga~~sg~~~a~~i~~ 101 (114)
...||+|||.+|..+ +| |.++..++..|++|++.+.+
T Consensus 518 dg~pI~GLYAaG~~~gg~~g~~Y~g~G~~lg~a~~fGriAg~~aa~ 563 (564)
T PRK12845 518 DGSVIDGLYAIGNTAANAFGATYPGAGATIGQGLVYGYIAAQDAAA 563 (564)
T ss_pred CCCCCCCeeEeeeeccccccCCCCCcchhhHHHHHHHHHHHHHHhc
Confidence 345899999999543 33 33566778889999987753
No 68
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=82.61 E-value=1.7 Score=38.42 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=30.6
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+.....+.-|+..|+.||..|..
T Consensus 716 ~~Ts~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~ 752 (1006)
T PRK12775 716 QSTNLPGVFAGGDIVTGGATVILAMGAGRRAARSIAT 752 (1006)
T ss_pred cCCCCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 4688999999999987444578888999999998754
No 69
>PRK09077 L-aspartate oxidase; Provisional
Probab=82.56 E-value=1.6 Score=35.70 Aligned_cols=38 Identities=18% Similarity=0.269 Sum_probs=27.3
Q ss_pred CCCCCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|+|+|||.+|..+ | .|.++..++..|+.|++.+.+
T Consensus 361 ~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~ 407 (536)
T PRK09077 361 HGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILS 407 (536)
T ss_pred CCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHH
Confidence 3578899999999975 2 123566677788888877644
No 70
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=82.54 E-value=1.6 Score=34.72 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=28.9
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+.+..-+.-|+..|+.+|..|..
T Consensus 413 ~~Ts~~~VfA~GD~~~~~~~~~~A~~~G~~aA~~I~~ 449 (457)
T PRK11749 413 GRTSLPGVFAGGDIVTGAATVVWAVGDGKDAAEAIHE 449 (457)
T ss_pred CccCCCCEEEeCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 4677999999999986334566788899999887754
No 71
>PRK07395 L-aspartate oxidase; Provisional
Probab=82.46 E-value=0.77 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.398 Sum_probs=23.9
Q ss_pred CCCCCCCcEEEcCCCC----CCCC------ChhHHHHHHHHHHHHH
Q 033665 64 GHSTPIPQLYCCGDST----FPGI------GVPAVAASGAIVANSL 99 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~----~PG~------Gv~ga~~sg~~~a~~i 99 (114)
..+|+|+|||.||..+ | |. ++.-++..|+.+++.+
T Consensus 355 ~~~t~I~GLyAaGE~a~~G~h-GanRL~gnsl~e~lvfG~~a~~~~ 399 (553)
T PRK07395 355 NNQTSIPGLYAVGETASTGVH-GANRLASNSLLECLVFAAQLAQLE 399 (553)
T ss_pred CCcccCCCEEECccccccCCC-cccchHHHHHHHHHHHHHHHHHHH
Confidence 3578899999999965 2 32 2333455677777766
No 72
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=82.31 E-value=1.4 Score=36.34 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=24.5
Q ss_pred CCCCcEEEcCCCCC---CC------CChhHHHHHHHHHHHHHh
Q 033665 67 TPIPQLYCCGDSTF---PG------IGVPAVAASGAIVANSLV 100 (114)
Q Consensus 67 t~v~nLyl~G~~~~---PG------~Gv~ga~~sg~~~a~~i~ 100 (114)
|+|+|||.||..+. -| .++..++..|+.|++.+.
T Consensus 351 t~IpGLyAaGE~a~~g~hGanrlggnsl~~a~vfGr~Ag~~aa 393 (565)
T TIGR01816 351 QIVPGLYAAGEAACVSVHGANRLGTNSLLDLVVFGRAAGLSAA 393 (565)
T ss_pred CccCCeeecccccccCCCccccchhhHHHHHHHHHHHHHHHHH
Confidence 68999999999752 12 245666778888887764
No 73
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=82.28 E-value=1.4 Score=34.89 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=28.6
Q ss_pred CCcEEEcCCCC---CC----CCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDST---FP----GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~---~P----G~Gv~ga~~sg~~~a~~i~~ 101 (114)
-+|++++||.+ .| |.|+..|+.||+.||+.+.+
T Consensus 294 ~~g~llvGDAAg~v~p~g~~g~Gi~~A~~SG~lAAeai~~ 333 (428)
T PRK10157 294 GDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLS 333 (428)
T ss_pred cCCeEEEecccccccccCceeeeHHHHHHHHHHHHHHHHH
Confidence 48999999986 33 68999999999999998875
No 74
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=82.13 E-value=2.2 Score=32.93 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=31.1
Q ss_pred CCCCCCCcEEEcCCCCCC-CC---ChhHHHHHHHHHHHHHhcccc
Q 033665 64 GHSTPIPQLYCCGDSTFP-GI---GVPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~P-G~---Gv~ga~~sg~~~a~~i~~~~~ 104 (114)
..+|..+|+|.+||.+.. |. -+..++..|+.+|+.+++.+.
T Consensus 260 ~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n~~g~~~ 304 (377)
T PRK04965 260 YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKNLLGQNT 304 (377)
T ss_pred CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHHhcCCCc
Confidence 346789999999999743 22 355577889999999988653
No 75
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=82.06 E-value=6.1 Score=30.00 Aligned_cols=35 Identities=23% Similarity=0.449 Sum_probs=29.3
Q ss_pred CCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcccch
Q 033665 69 IPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQH 105 (114)
Q Consensus 69 v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~~~ 105 (114)
.+|||++.... +.|+..+-..|+.+|+.+++.+..
T Consensus 336 ~~~l~~a~G~~--~~G~~~~p~~g~~lA~li~g~~~~ 370 (387)
T COG0665 336 LPNLYVATGHG--GHGFTLAPALGRLLADLILGGEPE 370 (387)
T ss_pred CCCEEEEecCC--CcChhhccHHHHHHHHHHcCCCCC
Confidence 89999996554 578888888999999999997654
No 76
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=82.01 E-value=1.7 Score=36.02 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=26.8
Q ss_pred CCCCCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|+|||||.||..+ | .|.++..++..|+.|++.+.+
T Consensus 365 ~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~ 411 (580)
T TIGR01176 365 NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAE 411 (580)
T ss_pred CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 3578999999999753 3 123566677788888877653
No 77
>PRK13748 putative mercuric reductase; Provisional
Probab=81.59 E-value=2.2 Score=34.69 Aligned_cols=39 Identities=28% Similarity=0.323 Sum_probs=31.3
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|.++|+|.+||.+..-.-++.|+..|+.++..+++.+
T Consensus 391 ~~Ts~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 429 (561)
T PRK13748 391 MRTSVPHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGGD 429 (561)
T ss_pred cccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 578899999999998533456677888999999988653
No 78
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=81.51 E-value=2.4 Score=33.77 Aligned_cols=38 Identities=24% Similarity=0.324 Sum_probs=31.3
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
.+|.++|+|.+||.+..-.-.+-|...|+.+|+.++..
T Consensus 291 ~~T~~p~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 291 QNTNVPGIYALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred CcCCCCCEEEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 57789999999998864456778888999999999853
No 79
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=81.15 E-value=1.8 Score=34.92 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=29.0
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+.....+.-|+..|+.||..|..
T Consensus 440 ~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~ 476 (485)
T TIGR01317 440 YSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDR 476 (485)
T ss_pred ceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999987334566678899999888754
No 80
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=81.05 E-value=2 Score=35.43 Aligned_cols=34 Identities=6% Similarity=0.180 Sum_probs=24.7
Q ss_pred CCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHh
Q 033665 67 TPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 67 t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~ 100 (114)
++|+|||.||..+ | .|.++..++..|+.|++.+.
T Consensus 368 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 410 (575)
T PRK05945 368 GLVEGFFAAGECACVSVHGANRLGSNSLLECVVYGRRTGAAIA 410 (575)
T ss_pred CccCCeEeeeccccccccccccccchhHHHHHHHHHHHHHHHH
Confidence 4799999999964 2 12346677778888887764
No 81
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=80.85 E-value=2.2 Score=34.28 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 66 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 66 ~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
+|.++|+|.+||.+.+..-+..|+..|+.+|..|..
T Consensus 428 ~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~ 463 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILD 463 (467)
T ss_pred cCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHH
Confidence 567999999999987444456788899999988753
No 82
>PRK14694 putative mercuric reductase; Provisional
Probab=80.82 E-value=2.6 Score=33.66 Aligned_cols=40 Identities=25% Similarity=0.219 Sum_probs=32.2
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
..+|.++|+|.+||.+..-.-++-|+..|+.+|..+++.+
T Consensus 297 ~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~~ 336 (468)
T PRK14694 297 HLQTTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGGD 336 (468)
T ss_pred CcccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 3578899999999998645567778888999999988653
No 83
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=80.64 E-value=1.9 Score=35.75 Aligned_cols=34 Identities=18% Similarity=0.309 Sum_probs=24.1
Q ss_pred CCCCcEEEcCCCCC---CC------CChhHHHHHHHHHHHHHh
Q 033665 67 TPIPQLYCCGDSTF---PG------IGVPAVAASGAIVANSLV 100 (114)
Q Consensus 67 t~v~nLyl~G~~~~---PG------~Gv~ga~~sg~~~a~~i~ 100 (114)
|+|||||.||..+- -| .++..++..|+.|++.+.
T Consensus 378 t~IpGLYAaGE~a~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa 420 (588)
T PRK08958 378 VVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQ 420 (588)
T ss_pred CccCCeEecccccccCCCCCccchhhHHHHHHHHHHHHHHHHH
Confidence 68999999999642 12 245667778888877654
No 84
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=80.60 E-value=2.8 Score=33.17 Aligned_cols=39 Identities=23% Similarity=0.283 Sum_probs=31.8
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..+|.++|+|.+||.+.+..-..-|+.-|+.+|..+.+.
T Consensus 293 ~~~ts~~~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 293 HTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred CcccCCCCEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 457889999999999864455677888999999998873
No 85
>PLN02546 glutathione reductase
Probab=80.59 E-value=2.6 Score=34.88 Aligned_cols=40 Identities=23% Similarity=0.284 Sum_probs=32.8
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
..+|.++|+|.+||.+..-.-.+.|+..|+.+|+.+++..
T Consensus 375 ~l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~~ 414 (558)
T PLN02546 375 YSRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGNE 414 (558)
T ss_pred CceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 4578899999999999755667778888999999998753
No 86
>PRK10262 thioredoxin reductase; Provisional
Probab=80.55 E-value=0.99 Score=33.92 Aligned_cols=37 Identities=22% Similarity=0.221 Sum_probs=28.4
Q ss_pred CCCCCCcEEEcCCCCC-CCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~-PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+. +..=+..|+..|..||..+.+
T Consensus 275 ~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~ 312 (321)
T PRK10262 275 TQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAER 312 (321)
T ss_pred cccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHH
Confidence 4688999999999984 333466677888888887654
No 87
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=80.55 E-value=3 Score=33.32 Aligned_cols=40 Identities=23% Similarity=0.223 Sum_probs=32.6
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
..+|.++|+|.+||.+.+-.-...|..-|+.++..+++.+
T Consensus 299 ~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~~ 338 (466)
T PRK07845 299 VSRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGEA 338 (466)
T ss_pred CcccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCCC
Confidence 3578899999999998655567778889999999888753
No 88
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=80.52 E-value=2.3 Score=37.72 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=31.7
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|.++|+|.+||.+.....+.-|+..|+.||..|++..
T Consensus 801 ~~Ts~pgVFAaGD~a~GP~tVv~AIaqGr~AA~nIl~~~ 839 (1012)
T TIGR03315 801 GETNITNVFVIGDANRGPATIVEAIADGRKAANAILSRE 839 (1012)
T ss_pred CccCCCCEEEEeCcCCCccHHHHHHHHHHHHHHHHhccc
Confidence 357799999999998623457788999999999998654
No 89
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=80.47 E-value=1.6 Score=35.94 Aligned_cols=33 Identities=15% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCCC---CC------CChhHHHHHHHHHHHHHh
Q 033665 68 PIPQLYCCGDSTF---PG------IGVPAVAASGAIVANSLV 100 (114)
Q Consensus 68 ~v~nLyl~G~~~~---PG------~Gv~ga~~sg~~~a~~i~ 100 (114)
||+|||.||..+- -| .++..++..|+.|++.+.
T Consensus 370 ~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa 411 (577)
T PRK06069 370 WVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAA 411 (577)
T ss_pred EeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4999999999742 12 345666777887777654
No 90
>PRK14727 putative mercuric reductase; Provisional
Probab=80.14 E-value=2.6 Score=33.80 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
..+|.++|+|.+||.+....-++.|+..|+.+|..+++..
T Consensus 308 ~~~Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 347 (479)
T PRK14727 308 AMETSAPDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGGN 347 (479)
T ss_pred CeecCCCCEEEeeecCCcchhhhHHHHHHHHHHHHHcCCC
Confidence 3578899999999998533446677889999999998753
No 91
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=79.98 E-value=2.8 Score=33.14 Aligned_cols=38 Identities=26% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
.+|.++|+|.+||.+....-...|+..|+.+|..+++.
T Consensus 298 ~~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 298 YQTAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred cccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 46789999999998743334567788999999999865
No 92
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=79.86 E-value=2.2 Score=35.29 Aligned_cols=34 Identities=21% Similarity=0.356 Sum_probs=23.7
Q ss_pred CCCCcEEEcCCCCC---CC------CChhHHHHHHHHHHHHHh
Q 033665 67 TPIPQLYCCGDSTF---PG------IGVPAVAASGAIVANSLV 100 (114)
Q Consensus 67 t~v~nLyl~G~~~~---PG------~Gv~ga~~sg~~~a~~i~ 100 (114)
|+|+|||.+|..+- -| .++..++..|+.|++.+.
T Consensus 373 t~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 415 (583)
T PRK08205 373 TVVPGLYAAGECACVSVHGANRLGTNSLLDINVFGRRAGIAAA 415 (583)
T ss_pred CCcCCeeeccccccCCCCCCcCCchhhHHHHHHHHHHHHHHHH
Confidence 68999999999642 12 245567777777776654
No 93
>PRK08071 L-aspartate oxidase; Provisional
Probab=79.84 E-value=2 Score=34.93 Aligned_cols=38 Identities=21% Similarity=0.318 Sum_probs=26.4
Q ss_pred CCCCCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|+|+|||.||..+ | .|.++.-++..|+.|++.+..
T Consensus 340 ~~~t~I~GLyAaGE~a~~g~hGanrl~g~sl~~~~v~G~~Ag~~aa~ 386 (510)
T PRK08071 340 DGETSIPGLYAIGEVACTGVHGANRLASNSLLEGLVFGKRAAEHILT 386 (510)
T ss_pred CCcccCCCeEEcccccccccCCCcccchHHHHHHHHHHHHHHHHHHh
Confidence 3468899999999974 2 112355566778888887743
No 94
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=79.74 E-value=2.2 Score=35.82 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=25.9
Q ss_pred CCCCcEEEcCCCCC---CC------CChhHHHHHHHHHHHHHhc
Q 033665 67 TPIPQLYCCGDSTF---PG------IGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 67 t~v~nLyl~G~~~~---PG------~Gv~ga~~sg~~~a~~i~~ 101 (114)
|+|+|||.+|..+- -| .++..++..|+.|++.+.+
T Consensus 421 t~IpGLYAaGE~a~~g~hGanRlggnsL~~a~vfGr~Ag~~aa~ 464 (635)
T PLN00128 421 AVVPGLMAAGEAACASVHGANRLGANSLLDIVVFGRACANRVAE 464 (635)
T ss_pred CccCceEeeeccccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 68999999999752 12 2567778889998887643
No 95
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=79.64 E-value=3.2 Score=33.64 Aligned_cols=40 Identities=23% Similarity=0.325 Sum_probs=32.8
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
..+|.++|+|.+||.+.+..-.+-|+..|+.+++.+++.+
T Consensus 313 ~l~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~~ 352 (486)
T TIGR01423 313 FSRTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGNK 352 (486)
T ss_pred CCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCCC
Confidence 3578899999999998755667778889999999998753
No 96
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=79.50 E-value=1.6 Score=35.30 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=27.4
Q ss_pred CCCCCCcEEEcCCCC---C-----CCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDST---F-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~---~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+||+|||.+|..+ | .|.++..++..|++|++.+.+
T Consensus 457 ~g~pI~GLYAaGe~~gg~~g~~~~~G~~l~~~~~~GriAg~~aa~ 501 (506)
T PRK06481 457 DGSPITGLYAAGEVTGGLHGENRIGGNSVADIIIFGRQAGTQSAE 501 (506)
T ss_pred CCCEeCCeeeceeccccCCCCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 346899999999853 2 244567778889998887754
No 97
>PRK08401 L-aspartate oxidase; Provisional
Probab=79.48 E-value=2.1 Score=34.30 Aligned_cols=37 Identities=27% Similarity=0.362 Sum_probs=25.4
Q ss_pred CCCCCCcEEEcCCCCC---CCC------ChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTF---PGI------GVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~---PG~------Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|+|||||.+|..+- -|. ++.-++..|+.|++.+.+
T Consensus 319 ~~t~IpGLyAaGE~a~~G~hG~nrl~gnsl~~~~v~G~~ag~~aa~ 364 (466)
T PRK08401 319 YRTGIKNLYAIGEAASNGFHGANRLASNSLLECIVSGLEVARTISR 364 (466)
T ss_pred CcccCCCEEECccccccCCCCCCcchhHHHHHHHHHHHHHHHHHhh
Confidence 4689999999999741 132 233356778888877754
No 98
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=79.20 E-value=2.3 Score=36.21 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=29.9
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+....-+.-|+..|+.||..|.+
T Consensus 711 ~~Ts~~gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~ 747 (752)
T PRK12778 711 MQSSIPGIYAGGDIVRGGATVILAMGDGKRAAAAIDE 747 (752)
T ss_pred CCCCCCCEEEeCCccCCcHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999987334567888899999988854
No 99
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=79.03 E-value=2.5 Score=35.33 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=29.4
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+.+..-+.-|+..|+.||..|..
T Consensus 596 ~~Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~ 632 (639)
T PRK12809 596 TQTHLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLT 632 (639)
T ss_pred cccCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3578999999999987333457788899999998864
No 100
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=78.92 E-value=1 Score=35.45 Aligned_cols=30 Identities=30% Similarity=0.578 Sum_probs=20.4
Q ss_pred CCCCcEEEcCCCC---C-----CCCChhHHHHHHHHHH
Q 033665 67 TPIPQLYCCGDST---F-----PGIGVPAVAASGAIVA 96 (114)
Q Consensus 67 t~v~nLyl~G~~~---~-----PG~Gv~ga~~sg~~~a 96 (114)
+||||||.+|..+ | .|.++..++..|++|+
T Consensus 401 ~~IpGLyAaG~~~gg~~g~~~~~G~~~~~~~~~GriAg 438 (439)
T TIGR01813 401 KPIPGLFAAGEVTGGVHGANRLGGNAIADCIVFGRIAG 438 (439)
T ss_pred CEecccEEeeecccccCCCCCCchhhhhhhhhhhHhhc
Confidence 6899999999864 2 2344555666666654
No 101
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=78.81 E-value=3.3 Score=32.96 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=31.7
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
..+|..+|+|.+||.+.+-.-..-|+..|+.+|+.+.+.+
T Consensus 298 ~~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~~ 337 (466)
T PRK07818 298 YMRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGAE 337 (466)
T ss_pred CcccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCCC
Confidence 3578899999999998544456677788999999998753
No 102
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=78.62 E-value=2.7 Score=32.82 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=30.0
Q ss_pred CCcEEEcCCCC-----CCCCChhHHHHHHHHHHHHHhcc
Q 033665 69 IPQLYCCGDST-----FPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 69 v~nLyl~G~~~-----~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
-+|+.++||.+ .-|.|+.-++.||++||+.+.+.
T Consensus 268 ~~~~~lvGDAAg~v~p~~g~Gi~~A~~sg~~Aa~~i~~~ 306 (396)
T COG0644 268 GDGVLLVGDAAGFVNPLTGEGIRYAIKSGKLAAEAIAEA 306 (396)
T ss_pred cCCEEEEeccccCCCCcccCcHHHHHHHHHHHHHHHHHH
Confidence 57999999986 33889999999999999999885
No 103
>PRK07512 L-aspartate oxidase; Provisional
Probab=78.52 E-value=1.8 Score=35.24 Aligned_cols=38 Identities=16% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCCCCCCcEEEcCCCCC---CCC------ChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDSTF---PGI------GVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~---PG~------Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|+|+|||.+|..+- -|. ++..++..|+.+++.+.+
T Consensus 349 ~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~ 395 (513)
T PRK07512 349 DGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAG 395 (513)
T ss_pred CCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 34689999999999751 122 345556677877777644
No 104
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=78.03 E-value=3.7 Score=32.44 Aligned_cols=40 Identities=18% Similarity=0.282 Sum_probs=31.6
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~~ 104 (114)
.+|.++|+|.+||.+-+-.-...|+..|+.+|+.+.+...
T Consensus 295 l~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~~ 334 (461)
T TIGR01350 295 MRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKEP 334 (461)
T ss_pred cccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCCC
Confidence 4677999999999985434566778899999999987643
No 105
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=77.93 E-value=2 Score=34.78 Aligned_cols=38 Identities=26% Similarity=0.345 Sum_probs=29.8
Q ss_pred CCCCCCCcEEEcCCCCC-CCCChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~-PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|.++|+|.+||.+. |..-+..++..|..||..+..
T Consensus 471 ~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~ 509 (517)
T PRK15317 471 RGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFD 509 (517)
T ss_pred CCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHH
Confidence 45788999999999976 334577888899998877644
No 106
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=77.70 E-value=4.3 Score=32.18 Aligned_cols=39 Identities=23% Similarity=0.329 Sum_probs=30.6
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|.++|+|.+||.+....-..-|+..|+.+|+.+++..
T Consensus 297 ~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~ 335 (462)
T PRK06416 297 LRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP 335 (462)
T ss_pred CccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 467899999999998533455667788999999998743
No 107
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=77.68 E-value=3.8 Score=32.62 Aligned_cols=39 Identities=18% Similarity=0.151 Sum_probs=30.7
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..+|.++|+|.+||.+.|..-.+-|.-.|+.+|+.+++.
T Consensus 290 ~~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 290 YGRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred CcccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 357889999999999875555555667888999988864
No 108
>PRK06370 mercuric reductase; Validated
Probab=77.66 E-value=3.9 Score=32.46 Aligned_cols=39 Identities=26% Similarity=0.277 Sum_probs=31.4
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..+|.++|+|.+||.+.+..-...|...|+.+|+.++..
T Consensus 296 ~l~t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 296 QLRTTNPGIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CCcCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 357889999999999875555667777899999998864
No 109
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=77.15 E-value=3.6 Score=31.48 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=27.0
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|..+|+|.+||.+..-.-+.-|+..|+.+|..+..
T Consensus 311 ~~t~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~ 347 (352)
T PRK12770 311 HMTSREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIHE 347 (352)
T ss_pred cccCCCCEEEEcccccCcchHHHHHHHHHHHHHHHHH
Confidence 3567899999999986222355677788888888754
No 110
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=77.06 E-value=3.8 Score=32.79 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=30.3
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|.++|+|.+||.+....-...|..-|+.+++.+++..
T Consensus 300 ~~t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~~ 338 (471)
T PRK06467 300 CRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGKK 338 (471)
T ss_pred cccCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCCC
Confidence 478899999999987422345667788999999998754
No 111
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=77.04 E-value=1.5 Score=35.54 Aligned_cols=38 Identities=26% Similarity=0.333 Sum_probs=30.3
Q ss_pred CCCCCCCcEEEcCCCCC-CCCChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~-PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|.++|+|.+||.+. |..-+..|+..|..||..+.+
T Consensus 472 ~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 472 RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFD 510 (515)
T ss_pred CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHH
Confidence 35678999999999986 444567788899999988754
No 112
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=76.79 E-value=3.4 Score=34.53 Aligned_cols=35 Identities=20% Similarity=0.399 Sum_probs=25.3
Q ss_pred CCCCcEEEcCCCCC---CC------CChhHHHHHHHHHHHHHhc
Q 033665 67 TPIPQLYCCGDSTF---PG------IGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 67 t~v~nLyl~G~~~~---PG------~Gv~ga~~sg~~~a~~i~~ 101 (114)
++|+|||.+|..+- .| .++..++..|+.|++.+.+
T Consensus 400 t~I~GLyAaGE~a~~g~hGanrlggnsl~~~~vfGr~Ag~~aa~ 443 (617)
T PTZ00139 400 KIVPGLLAAGEAACASVHGANRLGANSLLDIVVFGRAAANTVME 443 (617)
T ss_pred CccCCceecccccccCcCCCcccchhhHHHHHHHHHHHHHHHHH
Confidence 57999999999641 12 3566777888888877643
No 113
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=76.76 E-value=4 Score=32.37 Aligned_cols=39 Identities=23% Similarity=0.169 Sum_probs=30.9
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..+|.++|+|.+||.+.+..-.+.|...|+.+|..+++.
T Consensus 291 ~~~Ts~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 291 TLRTSNPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CccCCCCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 357889999999999865444566777899999998865
No 114
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=76.74 E-value=1.1 Score=33.24 Aligned_cols=71 Identities=21% Similarity=0.368 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCCCCCCChhHH
Q 033665 9 YCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVPAV 88 (114)
Q Consensus 9 ~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~PG~Gv~ga 88 (114)
.+.+++.+++++ |++++..+....... ..+ .+.+. .+-+..+..+|||+++.. .|.|+..+
T Consensus 288 ~~~l~~~~~~~~-p~l~~~~v~~~~~g~----r~~--t~d~~----------p~ig~~~~~~~l~~~~g~--~~~G~~~a 348 (358)
T PF01266_consen 288 IDELLERLARLL-PGLGDAEVVRSWAGI----RPF--TPDGR----------PIIGELPGSPNLYLAGGH--GGHGFTLA 348 (358)
T ss_dssp HHHHHHHHHHHS-GGGGGSEEEEEEEEE----EEE--ETTSE----------CEEEEESSEEEEEEEECE--TTCHHHHH
T ss_pred HHHhHHHHHHHH-HHhhhccccccccce----eee--ccCCC----------eeeeecCCCCCEEEEECC--CchHHHHH
Confidence 678999999999 998444444332220 000 01110 001122348899999544 36789888
Q ss_pred HHHHHHHHHH
Q 033665 89 AASGAIVANS 98 (114)
Q Consensus 89 ~~sg~~~a~~ 98 (114)
..+|+.+|+.
T Consensus 349 ~~~a~~~a~~ 358 (358)
T PF01266_consen 349 PGLAELLADL 358 (358)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 8899888863
No 115
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=76.65 E-value=3.1 Score=32.51 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=28.2
Q ss_pred CCcEEEcCCCC---C--CCCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDST---F--PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~---~--PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
-+|+.++||.+ + -|.|+..+|.||++||+.+.+
T Consensus 269 ~~~~llvGDAAg~v~P~tGeGI~~A~~sg~~aa~~i~~ 306 (398)
T TIGR02028 269 VGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVE 306 (398)
T ss_pred CCCEEEEEcCCCCCCcccccchHHHHHHHHHHHHHHHH
Confidence 47999999985 3 378999999999999999874
No 116
>PF05199 GMC_oxred_C: GMC oxidoreductase; InterPro: IPR007867 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. The function of this C-terminal conserved domain is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0055114 oxidation-reduction process; PDB: 3BG7_F 2IGM_D 3BLY_A 3BG6_H 3LSK_A 2IGO_A 3K4B_A 3K4L_B 2IGN_B 3K4M_H ....
Probab=76.29 E-value=2.2 Score=28.00 Aligned_cols=35 Identities=17% Similarity=0.160 Sum_probs=20.1
Q ss_pred CCCCC-CCCcEEEcCCCCCCCCChhHHHHHHHHHHH
Q 033665 63 PGHST-PIPQLYCCGDSTFPGIGVPAVAASGAIVAN 97 (114)
Q Consensus 63 p~~~t-~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~ 97 (114)
+..+. .++|||.+++|++|-.+-.--.++....|.
T Consensus 107 ~~~rv~g~~nL~V~DaSv~P~~~~~np~~t~~ala~ 142 (144)
T PF05199_consen 107 PDLRVHGVRNLRVADASVFPTSPGANPTLTIMALAE 142 (144)
T ss_dssp TTSBBTTSBSEEE-SGGGSSS-SSSSSHHHHHHHHH
T ss_pred CCCCeeeeeeEEECCCCcCCCCCCcCcHHHHHHHee
Confidence 33443 599999999999997532222234444444
No 117
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=75.58 E-value=2.9 Score=36.43 Aligned_cols=37 Identities=22% Similarity=0.314 Sum_probs=28.2
Q ss_pred CCCCCCCcEEEcCCCC-CCCCChhHHHHHHHHHHHHHh
Q 033665 64 GHSTPIPQLYCCGDST-FPGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~-~PG~Gv~ga~~sg~~~a~~i~ 100 (114)
..+|.|+|||.||+.+ .+...+.+++.-|+.++..+.
T Consensus 369 ~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~ 406 (897)
T PRK13800 369 HARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAA 406 (897)
T ss_pred CCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHH
Confidence 3578899999999974 345677777788888777664
No 118
>PLN02815 L-aspartate oxidase
Probab=75.54 E-value=3.2 Score=34.59 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=26.5
Q ss_pred CCCCCCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHh
Q 033665 64 GHSTPIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~ 100 (114)
..+|+|+|||.||..+ | -|.++.-++..|+.|++.+.
T Consensus 385 ~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa 430 (594)
T PLN02815 385 QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSI 430 (594)
T ss_pred CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHH
Confidence 4578999999999975 2 12345566778888887764
No 119
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=75.42 E-value=3.1 Score=34.46 Aligned_cols=34 Identities=18% Similarity=0.376 Sum_probs=25.1
Q ss_pred CCCcEEEcCCCC----C-----CCCChhHHHHHHHHHHHHHhc
Q 033665 68 PIPQLYCCGDST----F-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 68 ~v~nLyl~G~~~----~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
+|||||.+|..+ | .|.++..++..|+.|++.+.+
T Consensus 382 ~IpGLyAaGE~a~~g~hGanrl~gnsl~~~~v~Gr~Ag~~aa~ 424 (591)
T PRK07057 382 PVNGFYAIGECSCVSVHGANRLGTNSLLDLVVFGRAAGNHIVD 424 (591)
T ss_pred eeCCeEeCccccccCCCccccchhhHHHHHHHHHHHHHHHHHH
Confidence 799999999964 2 113567778888888887653
No 120
>PRK10015 oxidoreductase; Provisional
Probab=75.37 E-value=3.1 Score=32.97 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=28.6
Q ss_pred CCcEEEcCCCC---CC----CCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDST---FP----GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~---~P----G~Gv~ga~~sg~~~a~~i~~ 101 (114)
-+|+.++||.+ .| |.|+..|+.||++||+.+.+
T Consensus 294 ~~g~llvGDAAg~v~p~~~~g~Gi~~A~~SG~~AAe~i~~ 333 (429)
T PRK10015 294 NDGVMIVGDAAGFCLNLGFTVRGMDLAIASAQAAATTVIA 333 (429)
T ss_pred cCCeEEEecccccccccCccccchhHHHHHHHHHHHHHHH
Confidence 68999999984 43 68999999999999998864
No 121
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=75.11 E-value=4.1 Score=34.20 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=28.0
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+.+..-+.-|+..|+.||..|..
T Consensus 462 ~~Ts~pgVfA~GDv~~g~~~v~~Ai~~G~~AA~~I~~ 498 (652)
T PRK12814 462 LQTSVAGVFAGGDCVTGADIAINAVEQGKRAAHAIDL 498 (652)
T ss_pred CcCCCCCEEEcCCcCCCchHHHHHHHHHHHHHHHHHH
Confidence 3577999999999986333456777888888877643
No 122
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=74.82 E-value=4.7 Score=32.26 Aligned_cols=39 Identities=21% Similarity=0.307 Sum_probs=30.2
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|.++|+|.+||.+..-.-..-|...|+.+|+.+.+..
T Consensus 310 ~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 310 CRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 467899999999998533355667778999999988754
No 123
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=73.99 E-value=3.4 Score=36.39 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=30.7
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+.+..-+.-|+..|+.||..|.+
T Consensus 588 ~~Ts~pgVFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~ 624 (944)
T PRK12779 588 QRTSIKGVYSGGDAARGGSTAIRAAGDGQAAAKEIVG 624 (944)
T ss_pred CccCCCCEEEEEcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999998444577888899999998865
No 124
>PRK07846 mycothione reductase; Reviewed
Probab=73.91 E-value=5.4 Score=31.78 Aligned_cols=39 Identities=15% Similarity=0.159 Sum_probs=29.9
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..+|.++|+|.+||.+.+..-..-|..-|+.+++.++..
T Consensus 287 ~~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 287 YQRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred CcccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 357889999999999875444455667788888888754
No 125
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=72.90 E-value=4.8 Score=35.85 Aligned_cols=39 Identities=21% Similarity=0.242 Sum_probs=31.1
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|.++|+|.+||.+.....+.-|+..|+.||..|++..
T Consensus 803 lqTs~pgVFAaGD~a~Gp~tvv~Ai~qGr~AA~nI~~~~ 841 (1019)
T PRK09853 803 GETSLTNVYMIGDVQRGPSTIVAAIADARRAADAILSRE 841 (1019)
T ss_pred cccCCCCEEEEeccccCchHHHHHHHHHHHHHHHHhhhc
Confidence 367799999999998522356778889999999998754
No 126
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=72.67 E-value=18 Score=29.46 Aligned_cols=90 Identities=17% Similarity=0.173 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCc-C-CCCCCCCCCcEEEcC---CCCC
Q 033665 6 VLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKE-T-FPGHSTPIPQLYCCG---DSTF 80 (114)
Q Consensus 6 ~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~-~-~p~~~t~v~nLyl~G---~~~~ 80 (114)
++..+.++..+.+.+ |+...+.+.+.... +|-+.-.+.+|. ......|. . +|....|..-++++| ++-+
T Consensus 352 ~~r~~~vl~~l~~~~-g~~a~~~f~~~~~~---~W~~dpwt~G~~--aa~~~g~~~~~~~~l~~p~gRIh~AgtEhas~~ 425 (450)
T COG1231 352 AERRQKVLARLAKLF-GDEAADPFDYGASV---DWSKDPWTLGGT--AAYPPGQRTKLYPTLPAPHGRIHFAGTEHASEF 425 (450)
T ss_pred HHHHHHHHHhHhhhC-Chhhccccccceee---ecccCCcCCccc--cccCCcccccccccccCCCCceEEeeecccccc
Confidence 456788999999999 74325554442222 355543333322 11122232 1 244456677899999 3334
Q ss_pred CCCChhHHHHHHHHHHHHHhcc
Q 033665 81 PGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 81 PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
++=+-||+.||..+|.+|...
T Consensus 426 -~Gw~eGAi~Sg~~AA~ei~~~ 446 (450)
T COG1231 426 -GGWLEGAIRSGQRAAAEIHAL 446 (450)
T ss_pred -cchhHHHHHHHHHHHHHHHHh
Confidence 456679999999999988653
No 127
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=72.62 E-value=13 Score=20.45 Aligned_cols=20 Identities=20% Similarity=0.001 Sum_probs=17.6
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033665 2 KILSVLKYCVIWRAVERALG 21 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~g 21 (114)
.+.|+++.+.+.+.+.+.+|
T Consensus 13 ~eqk~~l~~~i~~~l~~~~g 32 (58)
T cd00491 13 DEQKRELIERVTEAVSEILG 32 (58)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 46799999999999999885
No 128
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=72.47 E-value=5.8 Score=31.69 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=29.3
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|.++|+|.+||.+..-.-.+-|...|+.+++.+++..
T Consensus 301 ~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~ 339 (466)
T PRK06115 301 HRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA 339 (466)
T ss_pred eecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 578899999999998522334556678888998888753
No 129
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=72.02 E-value=4.8 Score=32.99 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=27.8
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHh
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~ 100 (114)
..|.++|+|.+||.+....-+..|+..|+.+|..|.
T Consensus 405 ~~ts~~~Vfa~GD~~~g~~~v~~Av~~G~~aA~~i~ 440 (564)
T PRK12771 405 MMTGRPGVFAGGDMVPGPRTVTTAIGHGKKAARNID 440 (564)
T ss_pred ccCCCCCEEeccCcCCCchHHHHHHHHHHHHHHHHH
Confidence 356799999999998733355677788999988773
No 130
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=71.75 E-value=13 Score=31.51 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=24.7
Q ss_pred CCCCC-CCcEEEcCCCCCCCCChhHHH----HHHHHHHHHHhccc
Q 033665 64 GHSTP-IPQLYCCGDSTFPGIGVPAVA----ASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~-v~nLyl~G~~~~PG~Gv~ga~----~sg~~~a~~i~~~~ 103 (114)
...+. ++|||++||-.- -.|..-|. ++|.+++..+.+++
T Consensus 351 ~le~k~~~gLf~AGqi~G-t~Gy~eAaa~Gl~Ag~naa~~~~~~~ 394 (617)
T TIGR00136 351 TLETKLIQGLFFAGQING-TTGYEEAAAQGLMAGINAALKLQNKE 394 (617)
T ss_pred hheeCCCCCeEEccccCC-cchHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33455 899999999542 24554443 45666777776654
No 131
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=71.67 E-value=6.2 Score=31.40 Aligned_cols=39 Identities=21% Similarity=0.225 Sum_probs=29.8
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|.++|+|.+||.+.+-.-.+-|...|+.++..+.+.+
T Consensus 293 ~~ts~~~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~~ 331 (458)
T PRK06912 293 MQTNVPHIYACGDVIGGIQLAHVAFHEGTTAALHASGED 331 (458)
T ss_pred eecCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 467899999999998533345567778999999888653
No 132
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=71.54 E-value=4.7 Score=32.30 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=28.9
Q ss_pred CCCcEEEcCCCC-----CCCCChhHHHHHHHHHHHHHhc
Q 033665 68 PIPQLYCCGDST-----FPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 68 ~v~nLyl~G~~~-----~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.-.|+.++||.+ .-|.|+.-+|.||+++|+.+.+
T Consensus 307 ~~~~vlLvGDAAg~v~P~tGeGI~~Am~sg~~AAe~i~~ 345 (450)
T PLN00093 307 VRGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVE 345 (450)
T ss_pred eCCCcEEEeccccCCCccccccHHHHHHHHHHHHHHHHH
Confidence 357899999975 3488999999999999999874
No 133
>PLN02852 ferredoxin-NADP+ reductase
Probab=71.09 E-value=3 Score=34.05 Aligned_cols=36 Identities=17% Similarity=0.113 Sum_probs=28.1
Q ss_pred CCCCCcEEEcCCCCCCCC--ChhHHHHHHHHHHHHHhcc
Q 033665 66 STPIPQLYCCGDSTFPGI--GVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 66 ~t~v~nLyl~G~~~~PG~--Gv~ga~~sg~~~a~~i~~~ 102 (114)
.|+++|+|.+|+... |+ -+..++..|+.+++.|+++
T Consensus 383 ~T~ipGvyAaGDi~~-Gp~gvI~t~~~dA~~ta~~i~~d 420 (491)
T PLN02852 383 ADTEPGLYVVGWLKR-GPTGIIGTNLTCAEETVASIAED 420 (491)
T ss_pred ccCCCCEEEeeeEec-CCCCeeeecHhhHHHHHHHHHHH
Confidence 377999999999987 43 3445667888899888865
No 134
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=70.42 E-value=8.6 Score=31.53 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhCC--CCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCC-cCCCCCCCCCCc-EEEcCCCC-
Q 033665 5 SVLKYCVIWRAVERALGP--GFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGK-ETFPGHSTPIPQ-LYCCGDST- 79 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP--~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q-~~~p~~~t~v~n-Lyl~G~~~- 79 (114)
+++..+..+..+++.+ + .. .+-+.+...- |.. .....|+|-....... ..+..-+.|+.| +|++|..+
T Consensus 362 ~~~~~~~~~~~l~k~f-~~~~~-~~p~~~~vt~----w~~-d~~~~gsys~~~~~~~~~~y~~l~~pi~~~~ffage~t~ 434 (501)
T KOG0029|consen 362 DSEIVKKAMKLLRKVF-GSEEV-PDPLDALVTR----WGT-DPLSGGSYSYVAVGSDGDDYDRLAEPIKNRVFFAGEATS 434 (501)
T ss_pred HHHHHHHHHHHHHHHh-ccCcC-CCccceeeee----ecc-cccCCccccccCCCCChhHHHHHhccccCcEEecchhhc
Confidence 5677888899999988 6 22 2222222211 111 0122222211110000 001223678999 99999886
Q ss_pred --CCCCChhHHHHHHHHHHHHHhcc
Q 033665 80 --FPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 80 --~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
+| +-+.||++||..+|..|+..
T Consensus 435 ~~~~-~tm~GA~~sG~~~a~~i~~~ 458 (501)
T KOG0029|consen 435 RKYP-GTMHGAYLSGLRAASDILDS 458 (501)
T ss_pred ccCC-CchHHHHHhhHHHHHHHHHH
Confidence 53 46779999999999988764
No 135
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=70.23 E-value=17 Score=20.45 Aligned_cols=38 Identities=8% Similarity=-0.140 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHH
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTH 40 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~ 40 (114)
.+.|+++.+.+.+.+.+.+|..- .+..+...-..|.+|
T Consensus 14 ~eqK~~l~~~it~~l~~~lg~~~-~~v~V~i~e~~~~~w 51 (63)
T TIGR00013 14 DEQKRQLIEGVTEAMAETLGANL-ESIVVIIDEMPKNNY 51 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCc-ccEEEEEEEcCHHHe
Confidence 36799999999999999885333 444444555554443
No 136
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=69.91 E-value=7 Score=31.54 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=29.0
Q ss_pred CCCCCCcEEEcCCCCC-CCCChhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~-PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
.+|.++|+|.+||.+. ...-.+-|...|+.+++.++..
T Consensus 306 ~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~~ 344 (484)
T TIGR01438 306 EQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFSG 344 (484)
T ss_pred cccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhcC
Confidence 5678999999999874 2233456677899999998864
No 137
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=69.79 E-value=7.4 Score=32.09 Aligned_cols=36 Identities=19% Similarity=0.399 Sum_probs=24.9
Q ss_pred CCCC-CCcEEEcCCCCC---CC------CChhHHHHHHHHHHHHHh
Q 033665 65 HSTP-IPQLYCCGDSTF---PG------IGVPAVAASGAIVANSLV 100 (114)
Q Consensus 65 ~~t~-v~nLyl~G~~~~---PG------~Gv~ga~~sg~~~a~~i~ 100 (114)
.+|+ |||||.||..+- -| ..+..++..|+.|++.+.
T Consensus 355 ~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa 400 (566)
T PRK06452 355 GRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVV 400 (566)
T ss_pred CCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 4676 999999999752 02 236667777777777654
No 138
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=68.39 E-value=2.9 Score=34.37 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=26.1
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHH-----------HHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAV-----------AASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga-----------~~sg~~~a~~i~~~ 102 (114)
..+|.++|||.+|-.+. .|+.|| +..|+.+|+.|..+
T Consensus 349 ~GrTsi~gLYAiGEvA~--TGlHGANRLASNSLLE~vV~g~~aA~~i~~~ 396 (518)
T COG0029 349 NGRTSIPGLYAIGEVAC--TGLHGANRLASNSLLECLVFGKRAAEDIAGR 396 (518)
T ss_pred CCcccCcccEEeeeecc--cccccchhhhhhhHHHHHHHHHHHHHHhhcc
Confidence 46899999999999874 566663 34556666665543
No 139
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=68.37 E-value=6.2 Score=33.28 Aligned_cols=37 Identities=16% Similarity=0.360 Sum_probs=24.1
Q ss_pred CCCC-CCCcEEEcCCCCC---CC------CChhHHHHHHHHHHHHHh
Q 033665 64 GHST-PIPQLYCCGDSTF---PG------IGVPAVAASGAIVANSLV 100 (114)
Q Consensus 64 ~~~t-~v~nLyl~G~~~~---PG------~Gv~ga~~sg~~~a~~i~ 100 (114)
..+| +|+|||.||..+- -| .++..++..|+.|++.+.
T Consensus 380 ~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa 426 (657)
T PRK08626 380 TGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVA 426 (657)
T ss_pred CCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHH
Confidence 3466 6999999999741 02 235556667777766553
No 140
>PRK07208 hypothetical protein; Provisional
Probab=67.67 E-value=6.5 Score=31.18 Aligned_cols=90 Identities=10% Similarity=0.069 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCC-CCCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDST-FPGI 83 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~-~PG~ 83 (114)
.+++.+.+++.|++. ++ +..+.++...+.- ++.-... |-..+.......-...++.+|||++|... +.-.
T Consensus 371 deel~~~~~~~L~~l-~~-~~~~~~~~~~v~r---~~~a~P~----y~~~~~~~~~~~~~~~~~~~~l~laGr~~~~~~~ 441 (479)
T PRK07208 371 DEDLIALAIQELARL-GL-IRPADVEDGFVVR---VPKAYPV----YDGTYERNVEIIRDLLDHFPNLHLVGRNGMHRYN 441 (479)
T ss_pred HHHHHHHHHHHHHHc-CC-CChhheeEEEEEE---ecCcccC----CCchHHHHHHHHHHHHHhcCCceeeccccccccC
Confidence 567888888888886 35 3244444443332 1111111 21111100000001235679999999754 3336
Q ss_pred ChhHHHHHHHHHHHHHhccc
Q 033665 84 GVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 84 Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+-+++.||..+|+.+....
T Consensus 442 ~~d~a~~sg~~~a~~i~~~~ 461 (479)
T PRK07208 442 NQDHSMLTAMLAVENIIAGE 461 (479)
T ss_pred ChhHHHHHHHHHHHHHhcCC
Confidence 78899999999999998774
No 141
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=66.97 E-value=9.6 Score=30.86 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=29.0
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+|.++|+|.+||.+-...=.+-|..-|+.+++.+++
T Consensus 298 ~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 298 MTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred cccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 4567999999999964223556777889999999996
No 142
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=66.38 E-value=8.5 Score=29.58 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=29.8
Q ss_pred CCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcccchH
Q 033665 68 PIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQHS 106 (114)
Q Consensus 68 ~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~~~~ 106 (114)
+.+|||++.... |.|+..+-..|+.+|+.|++.....
T Consensus 330 ~~~g~~~a~G~~--g~G~~~ap~~g~~la~~i~~~~~~~ 366 (381)
T TIGR03197 330 YYPGLYVLGGLG--SRGLTSAPLAAEILAAQICGEPLPL 366 (381)
T ss_pred CCCCeEEEeccc--chHHHHHHHHHHHHHHHHhCCCCCC
Confidence 389999886654 6799888899999999998775443
No 143
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=66.01 E-value=11 Score=29.18 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=30.4
Q ss_pred CCCCCCCcEEEcCCCCC-CC-CC-------hhHHHHHHHHHHHHHhccc
Q 033665 64 GHSTPIPQLYCCGDSTF-PG-IG-------VPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~-PG-~G-------v~ga~~sg~~~a~~i~~~~ 103 (114)
..+|..+|+|.+||.+. |. .| +.-|...|+.+|+.+++..
T Consensus 262 ~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~ni~g~~ 310 (396)
T PRK09754 262 ACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQIAAAAMLGLP 310 (396)
T ss_pred CCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHHHHHHHhcCCC
Confidence 45678999999999873 21 23 3567889999999998764
No 144
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=65.88 E-value=8.6 Score=33.93 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=28.7
Q ss_pred CCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhc
Q 033665 66 STPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 66 ~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.|.++|+|.+||.+- ..++..|+..|+.|+..+..
T Consensus 435 ~t~v~gVyaaGD~~g-~~~~~~A~~eG~~Aa~~i~~ 469 (985)
T TIGR01372 435 GDAVQGCILAGAANG-LFGLAAALADGAAAGAAAAR 469 (985)
T ss_pred CCCCCCeEEeeccCC-ccCHHHHHHHHHHHHHHHHH
Confidence 366899999998875 45888899999999988753
No 145
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=65.34 E-value=11 Score=30.12 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=29.4
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|..+|+|.+||.+..-.-...++..|+.+++.+++.+
T Consensus 306 l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (472)
T PRK05976 306 CQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344 (472)
T ss_pred cccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 467789999999997522345567778899998887653
No 146
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=65.13 E-value=7.5 Score=32.66 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=21.7
Q ss_pred CCCCCCCcEEEcCCCC---C-----CCCChhHHHHHHHHHH
Q 033665 64 GHSTPIPQLYCCGDST---F-----PGIGVPAVAASGAIVA 96 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~---~-----PG~Gv~ga~~sg~~~a 96 (114)
..+|.|+|||.||..+ | .|.++..++.-|+.|+
T Consensus 414 ~~~T~i~GLyAaGE~~~g~HGanRL~~nsL~e~lv~G~~ag 454 (640)
T PRK07573 414 NLMSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVL 454 (640)
T ss_pred CCccccCCEEECccccccCCCcccccchhHHHHHHHHHHHh
Confidence 3578899999999964 2 0113555566666664
No 147
>PTZ00052 thioredoxin reductase; Provisional
Probab=65.03 E-value=10 Score=30.73 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=28.8
Q ss_pred CCCCCcEEEcCCCCC-CCCChhHHHHHHHHHHHHHhccc
Q 033665 66 STPIPQLYCCGDSTF-PGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 66 ~t~v~nLyl~G~~~~-PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
+|.++|+|.+||.+. +..-.+-|+..|+.+|+.++...
T Consensus 304 ~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~~ 342 (499)
T PTZ00052 304 CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQS 342 (499)
T ss_pred cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCCC
Confidence 688999999999873 22345567778999999888643
No 148
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=64.86 E-value=12 Score=29.42 Aligned_cols=39 Identities=18% Similarity=-0.000 Sum_probs=29.6
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..+|.++|+|.+||.+..-.=.+-+...|+.+++.+++.
T Consensus 279 ~~~Ts~~~IyA~GD~~~~~~~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 279 YLHTTADNIWAMGDVTGGLQFTYISLDDYRIVRDELLGE 317 (441)
T ss_pred CcccCCCCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 357889999999999863344556666788888888863
No 149
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=64.84 E-value=4.3 Score=33.03 Aligned_cols=82 Identities=20% Similarity=0.221 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhC---CCCCCCCCCCCCCCcCCCC--CCCCCCcEEEcCCCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLR---RNRGTYGPAIQAGKETFPG--HSTPIPQLYCCGDST 79 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~---~~~G~~G~~~~~~q~~~p~--~~t~v~nLyl~G~~~ 79 (114)
.+++.+.+.+.+.+++ ++ ++. |.....+.+ -|. |-..|...+...-. ...+-.+|+++|.+.
T Consensus 404 ~ee~~~~v~~alq~~L--gi-~~~--------P~~~~v~l~~~ciPq--y~vGh~~~le~a~~~l~~~~g~~l~l~G~~y 470 (491)
T KOG1276|consen 404 PEELVNAVTSALQKML--GI-SNK--------PVSVNVHLWKNCIPQ--YTVGHDDVLEAAKSMLTDSPGLGLFLGGNHY 470 (491)
T ss_pred HHHHHHHHHHHHHHHh--CC-CCC--------cccccceehhhcccc--eecchHHHHHHHHHHHHhCCCCceEeecccc
Confidence 4677888888888887 56 444 222111111 111 33333222211111 122346899999998
Q ss_pred CCCCChhHHHHHHHHHHHHHh
Q 033665 80 FPGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 80 ~PG~Gv~ga~~sg~~~a~~i~ 100 (114)
- |.+|.=++++|+.+|..+.
T Consensus 471 ~-Gv~vgdcI~sg~~~A~~v~ 490 (491)
T KOG1276|consen 471 G-GVSVGDCIESGRKTAVEVI 490 (491)
T ss_pred C-CCChhHHHHhhHHHHHhhc
Confidence 7 8999999999999988764
No 150
>PRK07804 L-aspartate oxidase; Provisional
Probab=64.45 E-value=6.3 Score=32.28 Aligned_cols=36 Identities=19% Similarity=0.331 Sum_probs=22.3
Q ss_pred CCCCCCcEEEcCCCCC---CCC------ChhHHHHHHHHHHHHHh
Q 033665 65 HSTPIPQLYCCGDSTF---PGI------GVPAVAASGAIVANSLV 100 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~---PG~------Gv~ga~~sg~~~a~~i~ 100 (114)
.+|+|+|||.||..+- -|. .+.-++..|+.+++.+.
T Consensus 366 ~~t~i~GLyAaGe~~~~g~hGa~~l~~~sl~~~~v~G~~ag~~aa 410 (541)
T PRK07804 366 GRTSVPGLYAAGEVACTGVHGANRLASNSLLEGLVVGERAGAAAA 410 (541)
T ss_pred CcccCCCeEEcccccccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999752 021 12223445667666654
No 151
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=63.97 E-value=9 Score=29.60 Aligned_cols=33 Identities=21% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCcEEEcCCCC---C--CCCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDST---F--PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~---~--PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
-.|++++||.+ . -|.|+..++.||+++|+.+.+
T Consensus 263 ~~~v~lvGDAAg~v~P~tG~GI~~A~~sg~~aa~~i~~ 300 (388)
T TIGR02023 263 FGRAMLVGDAAGLVTPASGEGIYFAMKSGQMAAQAIAE 300 (388)
T ss_pred CCCEEEEeccccCcCCcccccHHHHHHHHHHHHHHHHH
Confidence 46799999986 2 367999999999999998864
No 152
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=63.43 E-value=9.9 Score=31.22 Aligned_cols=36 Identities=25% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCCCCcEEEcCCCCCC--CCChhHHHHHHHHHHHHHhc
Q 033665 66 STPIPQLYCCGDSTFP--GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 66 ~t~v~nLyl~G~~~~P--G~Gv~ga~~sg~~~a~~i~~ 101 (114)
.+.-+-+-|+|-.+|- -+=+.||+.||+.-|++++.
T Consensus 452 ~~~~p~I~FAGEaThr~~YsTthGA~~SG~REA~RL~~ 489 (498)
T KOG0685|consen 452 VTGRPQILFAGEATHRTFYSTTHGAVLSGWREADRLLE 489 (498)
T ss_pred cCCCceEEEccccccccceehhhhhHHhhHHHHHHHHH
Confidence 3455679999998753 35788999999999999987
No 153
>PRK11445 putative oxidoreductase; Provisional
Probab=60.20 E-value=13 Score=28.42 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=28.8
Q ss_pred CcEEEcCCCC-----CCCCChhHHHHHHHHHHHHHhcc
Q 033665 70 PQLYCCGDST-----FPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 70 ~nLyl~G~~~-----~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
+|++++||.+ .-|.|+..++.+|..+++.+.+.
T Consensus 264 ~~vvlVGDAAg~i~P~tG~Gi~~al~sa~~la~~l~~~ 301 (351)
T PRK11445 264 DNAFLIGEAAGFISPSSLEGISYALDSARILSEVLNKQ 301 (351)
T ss_pred CCEEEEEcccCccCCccCccHHHHHHhHHHHHHHHHhc
Confidence 6899999996 33789999999999999999764
No 154
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=60.18 E-value=8.2 Score=34.73 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=24.3
Q ss_pred CCCCCcEEEcCCCC---C-----CCCChhHHHHHHHHHHHHHhc
Q 033665 66 STPIPQLYCCGDST---F-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 66 ~t~v~nLyl~G~~~---~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
..||+|||.+|..+ | .|.++.-++..|++|++.+.+
T Consensus 857 ~~pIpGLYAAGe~~gg~~g~~y~gG~sl~~a~~fGriAG~~aa~ 900 (1167)
T PTZ00306 857 RRPILGLFGAGEVTGGVHGGNRLGGNSLLECVVFGKIAGDRAAT 900 (1167)
T ss_pred CceeCceEecceeccccccCCCCchhhHHHHHHHHHHHHHHHHH
Confidence 35899999999863 1 233455567777777776644
No 155
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=59.90 E-value=11 Score=31.34 Aligned_cols=34 Identities=24% Similarity=0.217 Sum_probs=20.4
Q ss_pred CCCCCcEEEcCCCCCCC--CChhHHHHHHHHHHHHH
Q 033665 66 STPIPQLYCCGDSTFPG--IGVPAVAASGAIVANSL 99 (114)
Q Consensus 66 ~t~v~nLyl~G~~~~PG--~Gv~ga~~sg~~~a~~i 99 (114)
+|.++|||.||+.+-.+ .-..+++.-|+.++..+
T Consensus 392 ~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~ 427 (608)
T PRK06854 392 MTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAA 427 (608)
T ss_pred ccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHH
Confidence 67899999999975311 11234444455544443
No 156
>PTZ00058 glutathione reductase; Provisional
Probab=59.81 E-value=15 Score=30.52 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=30.3
Q ss_pred CCCCCCCcEEEcCCCCC----------------------------------CCCChhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTF----------------------------------PGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~----------------------------------PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..+|.++|+|.+||.+. .-.=.+-|...|+.+|+.+++.
T Consensus 360 ~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ni~g~ 432 (561)
T PTZ00058 360 NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLADRLFGP 432 (561)
T ss_pred CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHHHHhCC
Confidence 35788999999999986 2334456777899999998875
No 157
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=59.70 E-value=11 Score=30.90 Aligned_cols=36 Identities=33% Similarity=0.386 Sum_probs=27.3
Q ss_pred CCCCCCcEEEcCCCCCCC-CChhHHHHHHHHHHHHHh
Q 033665 65 HSTPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLV 100 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG-~Gv~ga~~sg~~~a~~i~ 100 (114)
.+|.++|+|.+||.+..+ ..+..|+..|+.||..+.
T Consensus 269 ~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~ 305 (555)
T TIGR03143 269 METNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAE 305 (555)
T ss_pred cccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHH
Confidence 467899999999986422 346677888888888774
No 158
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=59.53 E-value=11 Score=31.57 Aligned_cols=14 Identities=36% Similarity=0.824 Sum_probs=12.2
Q ss_pred CCCCCcEEEcCCCC
Q 033665 66 STPIPQLYCCGDST 79 (114)
Q Consensus 66 ~t~v~nLyl~G~~~ 79 (114)
+|.|+|||.+|+.+
T Consensus 403 ~T~i~gLyA~Ge~~ 416 (614)
T TIGR02061 403 MTTVEGLFTCGDGV 416 (614)
T ss_pred ccccCCEEeceecc
Confidence 57899999999974
No 159
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=59.00 E-value=7.4 Score=32.65 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=25.8
Q ss_pred CCCCC-CCcEEEcCCCCC-------CCCChhHHHHHHHHHHHHHhccc
Q 033665 64 GHSTP-IPQLYCCGDSTF-------PGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~-v~nLyl~G~~~~-------PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
...|. |+|||+|||--- -+.|+ ++|.+||..+.+++
T Consensus 353 tLEtK~I~GLf~AGQINGTtGYEEAAaQGl----iAGiNAal~~~~~~ 396 (621)
T COG0445 353 TLETKKIKGLFFAGQINGTTGYEEAAAQGL----IAGINAALKVQGKE 396 (621)
T ss_pred chhhceecceEEcccccCCchhHHHHhhhH----HHHHHHHHHhcCCC
Confidence 34554 999999999631 13344 68999999988775
No 160
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=58.54 E-value=12 Score=26.99 Aligned_cols=31 Identities=23% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCcEEEcCCCC-----CCCCChhHHHHHHHHHHHHH
Q 033665 69 IPQLYCCGDST-----FPGIGVPAVAASGAIVANSL 99 (114)
Q Consensus 69 v~nLyl~G~~~-----~PG~Gv~ga~~sg~~~a~~i 99 (114)
-.|++++||.+ +-|.|+..++.+|..+|+.+
T Consensus 260 ~~~v~liGDAA~~~~P~~g~G~~~a~~~a~~aa~~~ 295 (295)
T TIGR02032 260 RGNVLLVGDAAGHVKPLTGEGIYYAMRSGDVAAEVI 295 (295)
T ss_pred cCCEEEEecccCCCCCccCCcHHHHHHHHHHHHhhC
Confidence 58899999986 34789999999999998754
No 161
>PRK06847 hypothetical protein; Provisional
Probab=58.53 E-value=20 Score=27.23 Aligned_cols=35 Identities=14% Similarity=0.212 Sum_probs=28.6
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHhccc
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
-.++.|+||.+|+ |.|...++..+...++.+...+
T Consensus 281 ~grv~LiGDAaH~~~P~~GqG~n~aieDA~~La~~L~~~~ 320 (375)
T PRK06847 281 RGRVVLIGDAAHATTPHLAQGAGMAIEDAIVLAEELARHD 320 (375)
T ss_pred CCeEEEEechhccCCCCccccHHHHHHHHHHHHHHHhhCC
Confidence 3579999999764 7799999999999999886543
No 162
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=58.29 E-value=17 Score=28.56 Aligned_cols=39 Identities=18% Similarity=0.033 Sum_probs=27.1
Q ss_pred CCCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
..+|.++|+|.+||.+....-.+-++..|+.+++.+.+.
T Consensus 278 ~~~t~~~~IyaiGD~~~~~~~~~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 278 YCQTSVPGVFAVGDVNGGPQFTYISLDDFRIVFGYLTGD 316 (438)
T ss_pred CcccCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 356789999999998741123345556677888877754
No 163
>PRK02106 choline dehydrogenase; Validated
Probab=57.29 E-value=16 Score=29.89 Aligned_cols=41 Identities=15% Similarity=0.137 Sum_probs=30.8
Q ss_pred CCCCC-CCCcEEEcCCCCCCCCC----hhHHHHHHHHHHHHHhccc
Q 033665 63 PGHST-PIPQLYCCGDSTFPGIG----VPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 63 p~~~t-~v~nLyl~G~~~~PG~G----v~ga~~sg~~~a~~i~~~~ 103 (114)
+..+. .++|||.+..|++|-.+ ...++.=|..+|+.|.++.
T Consensus 490 ~~~rV~Gv~nLrVvDaSv~P~~~~~np~~ti~aiaeraAd~I~~~~ 535 (560)
T PRK02106 490 PEGRVHGVEGLRVVDASIMPTITNGNLNAPTIMIAEKAADLIRGRT 535 (560)
T ss_pred CCCEEeccCCeEEeeccccCCCCCcchHHHHHHHHHHHHHHHhccC
Confidence 44443 49999999999998765 3355667788899888765
No 164
>COG2921 Uncharacterized conserved protein [Function unknown]
Probab=56.88 E-value=16 Score=23.15 Aligned_cols=30 Identities=17% Similarity=0.048 Sum_probs=22.6
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCceeEE
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKCDVK 32 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I~~~ 32 (114)
-...+++.+.+++.+.++. |+.--.++.++
T Consensus 22 G~a~~~l~~~vv~vvqr~a-p~~~~~~~~~k 51 (90)
T COG2921 22 GAAGPELEDQVVEVVQRHA-PGDYTPRVSWK 51 (90)
T ss_pred cccchhHHHHHHHHHHHHC-CcccCceeeec
Confidence 3567899999999999998 98734455443
No 165
>PF14123 DUF4290: Domain of unknown function (DUF4290)
Probab=55.85 E-value=14 Score=26.23 Aligned_cols=26 Identities=15% Similarity=-0.047 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCce
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKC 29 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I 29 (114)
++.+.++|+.|++.+.+.. |.+ |+.-
T Consensus 32 reeR~~~A~~II~iM~~l~-P~l-Rd~~ 57 (176)
T PF14123_consen 32 REERNRCAETIIEIMGNLN-PHL-RDVP 57 (176)
T ss_pred HHHHHHHHHHHHHHHHhcC-Ccc-CCCh
Confidence 3568899999999999998 999 7653
No 166
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=55.47 E-value=11 Score=28.89 Aligned_cols=38 Identities=29% Similarity=0.418 Sum_probs=26.4
Q ss_pred CCCCCCCcEEEcCCCCCC-CCChhHHHHHHHHHHHHHhc
Q 033665 64 GHSTPIPQLYCCGDSTFP-GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~P-G~Gv~ga~~sg~~~a~~i~~ 101 (114)
..+|.+||+|.|||-+.. +.-+..+...|.+||..+.+
T Consensus 260 ~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~ 298 (305)
T COG0492 260 EMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAER 298 (305)
T ss_pred CcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHH
Confidence 468899999999999753 32355555667666665543
No 167
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=54.63 E-value=13 Score=29.80 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=25.7
Q ss_pred CCCCCcEEEcCCCC------C--CCCChhHHHHHHHHHHHHHhcc
Q 033665 66 STPIPQLYCCGDST------F--PGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 66 ~t~v~nLyl~G~~~------~--PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
++.++|||.+|+-. . -|.|| ++.+|..|++.+.+.
T Consensus 377 ~~~~~nl~a~G~vl~g~d~~~~~~g~Gv--a~~ta~~a~~~~~~~ 419 (422)
T PRK05329 377 GPVIENLYAAGAVLGGYDPIREGCGSGV--ALATALHAAEQIAEE 419 (422)
T ss_pred CeeccceEEeeehhcCCchHHhCCCchh--HHHHHHHHHHHHHHh
Confidence 34599999999865 1 13455 556999999998764
No 168
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=53.63 E-value=38 Score=18.85 Aligned_cols=20 Identities=15% Similarity=-0.069 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033665 2 KILSVLKYCVIWRAVERALG 21 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~g 21 (114)
.+.|+++.+.+-+.+.+.+|
T Consensus 14 ~eqk~~l~~~it~~l~~~~~ 33 (61)
T PRK02220 14 EEQLKALVKDVTAAVSKNTG 33 (61)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 46799999999999999874
No 169
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=53.57 E-value=65 Score=26.82 Aligned_cols=23 Identities=17% Similarity=0.263 Sum_probs=17.7
Q ss_pred CCCCC-CCCcEEEcCCCCCCCCCh
Q 033665 63 PGHST-PIPQLYCCGDSTFPGIGV 85 (114)
Q Consensus 63 p~~~t-~v~nLyl~G~~~~PG~Gv 85 (114)
+..+. .++|||.++.+++|-++-
T Consensus 498 ~~~rv~g~~NL~V~d~s~~Pt~~~ 521 (544)
T TIGR02462 498 TDSKVHNFKNLYVGGNGNIPTAFG 521 (544)
T ss_pred CCCcEeCCCCeEEeccCcCCCCCC
Confidence 34444 599999999999987654
No 170
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=52.75 E-value=18 Score=28.67 Aligned_cols=39 Identities=21% Similarity=0.296 Sum_probs=26.2
Q ss_pred CCCCCCCcEEEcCCCCCCC------C-C---hhHHHHHHHHHHHHHhcc
Q 033665 64 GHSTPIPQLYCCGDSTFPG------I-G---VPAVAASGAIVANSLVSV 102 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG------~-G---v~ga~~sg~~~a~~i~~~ 102 (114)
..+|..+|+|.+||.+.+. + . ...+...|+.+++.+++.
T Consensus 264 ~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 264 KFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred CcccCCCCEEEeeeeEEeeeccCCCceecccchHHHHHHHHHHHHhcCC
Confidence 3567899999999997411 0 1 112445688888888764
No 171
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=52.23 E-value=16 Score=28.70 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=28.8
Q ss_pred CCCCCCCcEEEcCCCCCCC----------CChhHHHHHHHHHHHHHhccc
Q 033665 64 GHSTPIPQLYCCGDSTFPG----------IGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 64 ~~~t~v~nLyl~G~~~~PG----------~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
..+|..+|+|.+||.+... .-...|...|+.+|+.+.+..
T Consensus 269 ~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 269 YGETSIENIYAAGDCATIYNIVSNKNVYVPLATTANKLGRMVGENLAGRH 318 (444)
T ss_pred CcccCCCCEEEeeeEEEEEeccCCCeeeccchHHHHHHHHHHHHHhcCCC
Confidence 3467899999999997421 112356678999999888754
No 172
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=51.96 E-value=6 Score=31.65 Aligned_cols=36 Identities=31% Similarity=0.574 Sum_probs=24.3
Q ss_pred CCCCCCcEEEcCCCC-CCCCChhH-----------HHHHHHHHHHHHh
Q 033665 65 HSTPIPQLYCCGDST-FPGIGVPA-----------VAASGAIVANSLV 100 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~-~PG~Gv~g-----------a~~sg~~~a~~i~ 100 (114)
.-.|++|||.+|.-+ +-|+|+.| ++.||+.+.+.+.
T Consensus 502 ~GqPvpgLyAaGEvAGFGGGG~HGY~ALEGTFLGgCiFSGRaAGRaaa 549 (552)
T COG3573 502 DGQPVPGLYAAGEVAGFGGGGVHGYRALEGTFLGGCIFSGRAAGRAAA 549 (552)
T ss_pred CCCCCcchhhcchhcccCCCcccchhhhccceecceeecchhhhhhhc
Confidence 346899999999874 54566653 4556666655543
No 173
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=51.21 E-value=17 Score=29.11 Aligned_cols=40 Identities=28% Similarity=0.373 Sum_probs=32.2
Q ss_pred CCCCCcEEEcCCCCCCC-CChhHHHHHHHHHHHHHhcccch
Q 033665 66 STPIPQLYCCGDSTFPG-IGVPAVAASGAIVANSLVSVSQH 105 (114)
Q Consensus 66 ~t~v~nLyl~G~~~~PG-~Gv~ga~~sg~~~a~~i~~~~~~ 105 (114)
+|.++++|.+||-..-= -=.|-|+.||++.|+++..-+.+
T Consensus 328 ~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~gs~q 368 (503)
T KOG4716|consen 328 ATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFAGSTQ 368 (503)
T ss_pred hcCCCceEEecceecCCcccchhhhhhchHHHHHHhcCcce
Confidence 57799999999987521 25678899999999999886644
No 174
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=48.64 E-value=18 Score=26.70 Aligned_cols=34 Identities=24% Similarity=0.240 Sum_probs=23.5
Q ss_pred CCcEEEcCCCC---CCC---CChh-HHHHHHHHHHHHHhcc
Q 033665 69 IPQLYCCGDST---FPG---IGVP-AVAASGAIVANSLVSV 102 (114)
Q Consensus 69 v~nLyl~G~~~---~PG---~Gv~-ga~~sg~~~a~~i~~~ 102 (114)
+||||.+|=.+ +.+ +-+. |-++||+.+|+.++++
T Consensus 213 ~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~ 253 (257)
T PRK04176 213 YPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEK 253 (257)
T ss_pred cCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHH
Confidence 99999999654 211 1222 3456999999999875
No 175
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=48.50 E-value=19 Score=26.57 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCcEEEcCCCC---CC---CCChh-HHHHHHHHHHHHHhcc
Q 033665 69 IPQLYCCGDST---FP---GIGVP-AVAASGAIVANSLVSV 102 (114)
Q Consensus 69 v~nLyl~G~~~---~P---G~Gv~-ga~~sg~~~a~~i~~~ 102 (114)
+||||.+|=.+ +. .+-+. +-++||+.+|+.++++
T Consensus 212 ~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~ 252 (254)
T TIGR00292 212 VPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEK 252 (254)
T ss_pred cCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHH
Confidence 99999999654 21 12222 3345999999998765
No 176
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=48.22 E-value=15 Score=27.52 Aligned_cols=36 Identities=22% Similarity=0.244 Sum_probs=24.6
Q ss_pred CCCCcEEEcCCCCC-------CCCChhHHHHHHHHHHHHHhcc
Q 033665 67 TPIPQLYCCGDSTF-------PGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 67 t~v~nLyl~G~~~~-------PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
.-.||||.+|=.+. -|+=+-|-++||+.+|+.++++
T Consensus 216 eV~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~ 258 (262)
T COG1635 216 EVYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEK 258 (262)
T ss_pred cccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHH
Confidence 34899999996641 1222224457999999998765
No 177
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=48.19 E-value=48 Score=18.47 Aligned_cols=20 Identities=20% Similarity=-0.049 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033665 2 KILSVLKYCVIWRAVERALG 21 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~g 21 (114)
.+.|+++.+.+.+.+.+.+|
T Consensus 14 ~eqk~~l~~~it~~l~~~~~ 33 (62)
T PRK00745 14 VEQKRKLVEEITRVTVETLG 33 (62)
T ss_pred HHHHHHHHHHHHHHHHHHcC
Confidence 46799999999999999884
No 178
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=47.71 E-value=8.6 Score=26.94 Aligned_cols=38 Identities=24% Similarity=0.428 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCC
Q 033665 12 IWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGT 50 (114)
Q Consensus 12 il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~ 50 (114)
+-+++.-++ |+|+-+--..+++.||.||--|.+...|.
T Consensus 91 VtEqlaPff-p~f~ynPkD~RfIGTPvD~iVFdGLs~G~ 128 (175)
T COG4741 91 VTEQLAPFF-PEFKYNPKDARFIGTPVDFIVFDGLSEGN 128 (175)
T ss_pred hHhhhcccc-cCCCcCCccceeeCCCceEEEEcCCCcCc
Confidence 334444457 78755666788999999998888877765
No 179
>KOG2853 consensus Possible oxidoreductase [General function prediction only]
Probab=46.03 E-value=43 Score=26.96 Aligned_cols=79 Identities=20% Similarity=0.327 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCCCCCCCCCCCcCCCCCCCCCCcEEEcCCCCCCCCChh
Q 033665 7 LKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGTYGPAIQAGKETFPGHSTPIPQLYCCGDSTFPGIGVP 86 (114)
Q Consensus 7 ~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~PG~Gv~ 86 (114)
-+.+.|.-.|..++ |.| . ...+.+.++ -|.++ + +..+.+.-+...-+.|||++ ..+.|.|+.
T Consensus 405 ~F~qkiwP~L~nRV-P~f-e-takVqsaWa--GyyD~--N---------tfD~ngViG~HP~y~Nly~a--tGFsghGvq 466 (509)
T KOG2853|consen 405 YFYQKIWPHLANRV-PAF-E-TAKVQSAWA--GYYDH--N---------TFDDNGVIGEHPLYTNLYMA--TGFSGHGVQ 466 (509)
T ss_pred HHHhhhhHHHHhcc-ccc-c-eeeeeehhc--ccccc--c---------ccccCCcccCCcceeeeeee--ecccccchh
Confidence 46778888888888 988 3 233333221 01111 1 11222222222237899998 555588998
Q ss_pred HHHHHHHHHHHHHhccc
Q 033665 87 AVAASGAIVANSLVSVS 103 (114)
Q Consensus 87 ga~~sg~~~a~~i~~~~ 103 (114)
-++.-|+..++.|+.-.
T Consensus 467 qs~avgRAiaElIldG~ 483 (509)
T KOG2853|consen 467 QSPAVGRAIAELILDGA 483 (509)
T ss_pred cchHHHHHHHHHHhcCc
Confidence 88888999999998754
No 180
>PRK15031 5-carboxymethyl-2-hydroxymuconate delta-isomerase; Provisional
Probab=45.20 E-value=28 Score=23.31 Aligned_cols=40 Identities=3% Similarity=-0.013 Sum_probs=27.3
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCC-----CCCceeEEEeCCHHHHHH
Q 033665 2 KILSVLKYCVIWRAVERALGPGF-----CRDKCDVKFVGTPLTHQR 42 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i-----~~~~I~~~~~~TP~t~~~ 42 (114)
.+.|+++.+.+++.+.+++ +.+ ..=.++.+++-...+|.+
T Consensus 74 ~e~k~~l~~~l~~~l~~~~-~~~~~~~~~~LS~Ei~d~d~~~s~k~ 118 (126)
T PRK15031 74 LESRQEVGEMLFALIKAHF-AALMESRYLALSFEIEELHPTLNFKQ 118 (126)
T ss_pred HHHHHHHHHHHHHHHHHHh-hhhhcccceEEEEEEEEcCCccChhh
Confidence 4679999999999999987 543 122355666644446654
No 181
>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]
Probab=45.00 E-value=29 Score=26.77 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCC--CCCCCCCC
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNR--GTYGPAIQ 56 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~--G~~G~~~~ 56 (114)
+.++++.++-+.+..+.++ |-+ . .-...++.+|.+|..|+..-. +.+|+..-
T Consensus 190 ~kLR~~~a~Ymr~H~~df~-pf~-~-~eet~d~~~~~~f~~Yc~eI~~t~~WGgelE 243 (302)
T KOG2606|consen 190 QKLREETADYMREHVEDFL-PFL-L-DEETGDSLGPEDFDKYCREIRNTAAWGGELE 243 (302)
T ss_pred HHHHHHHHHHHHHHHHHhh-hHh-c-CccccccCCHHHHHHHHHHhhhhccccchHH
Confidence 4678899999999999999 877 4 457788889999999998632 22776543
No 182
>PRK00907 hypothetical protein; Provisional
Probab=45.00 E-value=25 Score=22.28 Aligned_cols=21 Identities=5% Similarity=-0.268 Sum_probs=18.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCC
Q 033665 3 ILSVLKYCVIWRAVERALGPGF 24 (114)
Q Consensus 3 ~~K~~~~~~il~~l~~~~gP~i 24 (114)
..++++.+.|++.++++. |++
T Consensus 25 ~a~~~l~~~V~~vv~~h~-p~~ 45 (92)
T PRK00907 25 TAERGLETELPRLLAATG-VEL 45 (92)
T ss_pred cCchhHHHHHHHHHHHhC-CCC
Confidence 356789999999999998 998
No 183
>PRK09126 hypothetical protein; Provisional
Probab=44.66 E-value=20 Score=27.35 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=27.1
Q ss_pred CCcEEEcCCCCC---C--CCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDSTF---P--GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~~---P--G~Gv~ga~~sg~~~a~~i~~ 101 (114)
-.++.++||.+| | |.|+..++..|..+++.+..
T Consensus 279 ~~rv~LvGDAAh~~~P~~GqG~~~ai~da~~la~~L~~ 316 (392)
T PRK09126 279 AKRFALIGDAAVGMHPVTAHGFNLGLKGQDILARLILA 316 (392)
T ss_pred hcceEEEehhhhcCCCcccchhhhhHHHHHHHHHHHHH
Confidence 478999999964 3 67899999999999988753
No 184
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=44.52 E-value=24 Score=28.38 Aligned_cols=34 Identities=26% Similarity=0.214 Sum_probs=23.2
Q ss_pred CCCcEEEcCC---CCCCCCChh--HHHHHHHHHHHHHhc
Q 033665 68 PIPQLYCCGD---STFPGIGVP--AVAASGAIVANSLVS 101 (114)
Q Consensus 68 ~v~nLyl~G~---~~~PG~Gv~--ga~~sg~~~a~~i~~ 101 (114)
.+|||||||- +.-|-+|.. -|..||+.|++-+..
T Consensus 367 ~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~ 405 (408)
T COG2081 367 KVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAA 405 (408)
T ss_pred cCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhh
Confidence 4999999994 444445543 566688888776654
No 185
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=44.35 E-value=25 Score=26.53 Aligned_cols=33 Identities=27% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~~ 101 (114)
-.++.++||.+|+ |.|+..++..|...++.+..
T Consensus 275 ~~~v~LiGDAah~~~P~~G~G~~~Ai~da~~La~~L~~ 312 (385)
T TIGR01988 275 APRLALIGDAAHTIHPLAGQGLNLGLRDVAALAEVLED 312 (385)
T ss_pred cCceEEEecccccCCccccchhhhhHHHHHHHHHHHHH
Confidence 4789999999754 67888899999999888864
No 186
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=42.53 E-value=33 Score=28.71 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=28.9
Q ss_pred CCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcccc
Q 033665 69 IPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 69 v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~~ 104 (114)
.+|||++.... +.|+..+-+.|++.|+.|++...
T Consensus 602 ~~gl~v~~G~g--s~Gl~~ap~~a~~lA~li~g~~~ 635 (662)
T PRK01747 602 LPGLYVAGALG--SRGLCSAPLGAELLASQIEGEPL 635 (662)
T ss_pred CCCeEEEeccc--ccHHHHHHHHHHHHHHHHhCCCC
Confidence 78999996664 67999999999999999988653
No 187
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=42.43 E-value=36 Score=29.37 Aligned_cols=39 Identities=23% Similarity=0.459 Sum_probs=28.7
Q ss_pred CCCCCCcEEEcCCCCC-CCC--C-hhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTF-PGI--G-VPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~-PG~--G-v~ga~~sg~~~a~~i~~~~ 103 (114)
.+|..+|+|.+||.+. ++. | +.-+...|+.+|..+++.+
T Consensus 260 ~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 260 MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred cccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 4788999999999974 332 2 3345567888999988765
No 188
>COG1574 Predicted metal-dependent hydrolase with the TIM-barrel fold [General function prediction only]
Probab=41.98 E-value=57 Score=27.13 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHhC----CCCCCCceeEEEeCCHHHHHHHhCCC
Q 033665 6 VLKYCVIWRAVERALG----PGFCRDKCDVKFVGTPLTHQRFLRRN 47 (114)
Q Consensus 6 ~~~~~~il~~l~~~~g----P~i~~~~I~~~~~~TP~t~~~~~~~~ 47 (114)
++-.+.+|+.+|+... .++ +.+|+|..+.+|.+++|+-...
T Consensus 344 D~Av~~~LdafE~~~~~~~~~~~-r~rieH~~~v~~~~i~R~~~Lg 388 (535)
T COG1574 344 DGAVDAALDAFEKARKKNGLKGL-RHRIEHAELVSPDQIERFAKLG 388 (535)
T ss_pred hHHHHHHHHHHHHHhhhcCCccC-CceeeeeeecCHhHHHHHHhcC
Confidence 4556788888888641 268 8999999999999999986543
No 189
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=41.86 E-value=24 Score=28.35 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=32.3
Q ss_pred CCCCCCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 65 HSTPIPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
.+|.+|++|-+||.+---.=.|-|++.|+..++++.+.
T Consensus 313 q~Tnvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~~ 350 (478)
T KOG0405|consen 313 QNTNVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFGG 350 (478)
T ss_pred ccCCCCceEEeccccCcEecchHHHhhhhhHHHHhhcC
Confidence 36889999999999855567788889999999999883
No 190
>PRK10597 DNA damage-inducible protein I; Provisional
Probab=41.18 E-value=73 Score=19.75 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCC
Q 033665 4 LSVLKYCVIWRAVERALGPGFCRDKCDVKFVGT 36 (114)
Q Consensus 4 ~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~T 36 (114)
..+.+.+.+..+|.+.| |+. ..++.++..++
T Consensus 17 a~~AL~~EL~kRl~~~f-Pd~-~~~v~Vr~~s~ 47 (81)
T PRK10597 17 AIDALAGELSRRIQYAF-PDN-EGHVSVRYAAA 47 (81)
T ss_pred HHHHHHHHHHHHHHhhC-CCC-CccEEEeecCC
Confidence 34667788888888889 998 65677666544
No 191
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=41.08 E-value=33 Score=29.96 Aligned_cols=40 Identities=15% Similarity=0.237 Sum_probs=28.2
Q ss_pred CCCCCCcEEEcCCCCC-CC--C-ChhHHHHHHHHHHHHHhcccc
Q 033665 65 HSTPIPQLYCCGDSTF-PG--I-GVPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~-PG--~-Gv~ga~~sg~~~a~~i~~~~~ 104 (114)
.+|..+|+|.+||.+. ++ . -+.-+...|+.+|+.+++...
T Consensus 269 l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~vaa~~i~g~~~ 312 (847)
T PRK14989 269 CQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQVAVDHLLGSEN 312 (847)
T ss_pred CcCCCCCEEEeecceeEcCcccccHHHHHHHHHHHHHHhcCCCc
Confidence 5688999999999973 22 1 233445678888888887653
No 192
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=40.77 E-value=29 Score=27.69 Aligned_cols=37 Identities=27% Similarity=0.284 Sum_probs=21.8
Q ss_pred CCCC-CCcEEEcCCCCCCCCChhHHH----HHHHHHHHHHhcc
Q 033665 65 HSTP-IPQLYCCGDSTFPGIGVPAVA----ASGAIVANSLVSV 102 (114)
Q Consensus 65 ~~t~-v~nLyl~G~~~~PG~Gv~ga~----~sg~~~a~~i~~~ 102 (114)
..+. ++|||++||-+- -.|..=|+ ++|+++++.+.++
T Consensus 350 l~~k~~~~lf~AGqi~G-~~Gy~eaaa~G~~ag~na~~~~~g~ 391 (392)
T PF01134_consen 350 LETKKIPGLFFAGQING-TEGYEEAAAQGLIAGINAARRLQGK 391 (392)
T ss_dssp SBBSSSBTEEE-GGGGT-B-SHHHHHHHHHHHHHHHHHHHTTS
T ss_pred eEECCCCCceECCCCcc-hhHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4555 999999999863 14554333 4555666665544
No 193
>PRK07538 hypothetical protein; Provisional
Probab=40.23 E-value=56 Score=25.38 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=27.2
Q ss_pred CcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHhcc
Q 033665 70 PQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 70 ~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~~~ 102 (114)
.++.|+||.+|+ |.|+-.++..|...++.+...
T Consensus 297 grv~LvGDAAH~~~P~~GqG~~~Ai~Da~~La~~L~~~ 334 (413)
T PRK07538 297 GRVTLLGDAAHPMYPVGSNGASQAILDARALADALAAH 334 (413)
T ss_pred CcEEEEeeccCcCCCCCcccHHHHHHHHHHHHHHHHhc
Confidence 579999999865 568888899999999888654
No 194
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=39.94 E-value=42 Score=27.32 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCC
Q 033665 9 YCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRR 46 (114)
Q Consensus 9 ~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~ 46 (114)
+|-+-|.|.+.+ ||| + ++..+-.|..|++|+.-
T Consensus 10 ~ellad~l~~~l-~~f-~---~~ki~~~p~~w~~wl~~ 42 (452)
T cd05295 10 AELLADYLQKNL-PDF-R---VHKIVKHPDEWEDWLQD 42 (452)
T ss_pred HHHHHHHHHhhC-CCc-e---EEEccCChHHHHHHHHH
Confidence 566777888889 999 4 88999999999998764
No 195
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=39.35 E-value=42 Score=26.43 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=23.1
Q ss_pred CCCCcEEEcCCCCCC-CC----ChhHHHHHHHHHHHHHhc
Q 033665 67 TPIPQLYCCGDSTFP-GI----GVPAVAASGAIVANSLVS 101 (114)
Q Consensus 67 t~v~nLyl~G~~~~P-G~----Gv~ga~~sg~~~a~~i~~ 101 (114)
+..+|+|.+||.+.. .. -..-|+..|..+|+.|..
T Consensus 306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~ 345 (424)
T PTZ00318 306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNN 345 (424)
T ss_pred CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 469999999999741 11 122355677777776654
No 196
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=39.34 E-value=29 Score=27.90 Aligned_cols=33 Identities=24% Similarity=0.456 Sum_probs=23.2
Q ss_pred CCCcEEEcCCCC------CCCCChhHHHHHHHHHHHHHh
Q 033665 68 PIPQLYCCGDST------FPGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 68 ~v~nLyl~G~~~------~PG~Gv~ga~~sg~~~a~~i~ 100 (114)
+++|||.+|.-. .=|+|-=-++.+|..|++.|+
T Consensus 381 ~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i~ 419 (419)
T TIGR03378 381 TIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQII 419 (419)
T ss_pred ccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhhC
Confidence 399999999753 334433335679999998874
No 197
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=39.03 E-value=41 Score=28.06 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=23.7
Q ss_pred CCCCCcEEEcCCCC--------CCCC-ChhHHHHHHHHHHHHHh
Q 033665 66 STPIPQLYCCGDST--------FPGI-GVPAVAASGAIVANSLV 100 (114)
Q Consensus 66 ~t~v~nLyl~G~~~--------~PG~-Gv~ga~~sg~~~a~~i~ 100 (114)
.+.++|||.+|..+ .+|+ .+..++..|+.|+....
T Consensus 366 ~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa 409 (562)
T COG1053 366 ETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAA 409 (562)
T ss_pred ccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHH
Confidence 56699999999986 3343 56666667666654443
No 198
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=38.82 E-value=71 Score=17.69 Aligned_cols=20 Identities=25% Similarity=-0.021 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033665 2 KILSVLKYCVIWRAVERALG 21 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~g 21 (114)
++.|+++++.+-+.+.+.+|
T Consensus 13 ~e~K~~l~~~it~~~~~~lg 32 (60)
T PF01361_consen 13 AEQKRELAEAITDAVVEVLG 32 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 46799999999999999884
No 199
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=38.66 E-value=42 Score=27.27 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=26.1
Q ss_pred CCCcEEEcCCCCCCCC--C--hhHHHHHHHHHHHHHhcc
Q 033665 68 PIPQLYCCGDSTFPGI--G--VPAVAASGAIVANSLVSV 102 (114)
Q Consensus 68 ~v~nLyl~G~~~~PG~--G--v~ga~~sg~~~a~~i~~~ 102 (114)
.++|||.|.+|++|-. | ...++.=|..+|+.|+++
T Consensus 491 Gv~nLrVvDaSv~P~~~~~n~~~t~~aiaeraAd~I~~~ 529 (532)
T TIGR01810 491 GMEGLRVVDASIMPRITNGNLNAPVIMMGEKAADIIRGK 529 (532)
T ss_pred ccCCcEEeeeccCCCCCCCccHHHHHHHHHHHHHHHhcc
Confidence 4999999999998872 2 234556677788888765
No 200
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=38.57 E-value=36 Score=26.56 Aligned_cols=39 Identities=18% Similarity=0.280 Sum_probs=27.8
Q ss_pred CCCCCCcEEEcCCCCCCC----------CChhHHHHHHHHHHHHHhccc
Q 033665 65 HSTPIPQLYCCGDSTFPG----------IGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~v~nLyl~G~~~~PG----------~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
.+|..+|+|.+||.+... +=...|...|+.+|+.|.+..
T Consensus 257 ~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~~ 305 (427)
T TIGR03385 257 FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGND 305 (427)
T ss_pred cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCCC
Confidence 467899999999997421 112355667888998888754
No 201
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=38.53 E-value=5.3 Score=30.96 Aligned_cols=19 Identities=47% Similarity=0.938 Sum_probs=13.7
Q ss_pred CCCCcEEEcCCCCCCCCChhH
Q 033665 67 TPIPQLYCCGDSTFPGIGVPA 87 (114)
Q Consensus 67 t~v~nLyl~G~~~~PG~Gv~g 87 (114)
+||+|||.+|..+ |+++.+
T Consensus 390 ~pIpGLyAaGe~~--gg~~~g 408 (417)
T PF00890_consen 390 QPIPGLYAAGEAA--GGGVHG 408 (417)
T ss_dssp EEEEEEEE-SCCE--EESSST
T ss_pred CEeCCEEEEEccc--ccccCC
Confidence 4899999999998 445544
No 202
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=38.21 E-value=37 Score=27.55 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=22.1
Q ss_pred CCCcEEEcCCCCCCCCChhHH----HHHHHHHHHHHhccc
Q 033665 68 PIPQLYCCGDSTFPGIGVPAV----AASGAIVANSLVSVS 103 (114)
Q Consensus 68 ~v~nLyl~G~~~~PG~Gv~ga----~~sg~~~a~~i~~~~ 103 (114)
.++|||+|||-+- --|..=+ +++|.++++.+.+++
T Consensus 329 ~~~~l~~AGqi~g-~~Gy~ea~a~G~~Ag~n~~~~~~g~~ 367 (436)
T PRK05335 329 KRPNLFFAGQITG-VEGYVESAASGLLAGINAARLALGKE 367 (436)
T ss_pred CCCCEEeeeeecC-chHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3899999999872 1233323 345666777766554
No 203
>PLN02661 Putative thiazole synthesis
Probab=37.99 E-value=33 Score=27.06 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=24.9
Q ss_pred CCcEEEcCCCCC-------CCCChhHHHHHHHHHHHHHhcccc
Q 033665 69 IPQLYCCGDSTF-------PGIGVPAVAASGAIVANSLVSVSQ 104 (114)
Q Consensus 69 v~nLyl~G~~~~-------PG~Gv~ga~~sg~~~a~~i~~~~~ 104 (114)
+||||.+|=.+. -|+=+-+-++||+.+|+.++++-+
T Consensus 286 ~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~l~ 328 (357)
T PLN02661 286 VPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKALG 328 (357)
T ss_pred cCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHHHc
Confidence 999999996541 122222345699999999988654
No 204
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=37.73 E-value=59 Score=25.04 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=26.9
Q ss_pred CcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHhc
Q 033665 70 PQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 70 ~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~~ 101 (114)
.++.|+||.+|+ |.|+..++..|...+..+..
T Consensus 279 grvvLvGDAAH~~~P~~GqG~n~ai~Da~~La~~L~~ 315 (392)
T PRK08243 279 GRLFLAGDAAHIVPPTGAKGLNLAASDVRYLARALVE 315 (392)
T ss_pred CCEEEEecccccCCCCcCcchhHHHHHHHHHHHHHHH
Confidence 579999999864 56899999999999988764
No 205
>PRK01271 4-oxalocrotonate tautomerase; Provisional
Probab=36.84 E-value=98 Score=18.75 Aligned_cols=40 Identities=13% Similarity=-0.126 Sum_probs=28.2
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHH
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQR 42 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~ 42 (114)
++.|+++++.+-+.+.+.+|-.- +.--+...-..|.+|..
T Consensus 15 ~EqK~~La~~iT~a~~~~lg~~~-e~v~V~I~ev~~~~W~~ 54 (76)
T PRK01271 15 EEQKAALAADITDVIIRHLNSKD-SSISIALQQIQPESWQA 54 (76)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCc-ceEEEEEEEcCHHHhhH
Confidence 46799999999999999886333 33334455566666776
No 206
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=36.65 E-value=95 Score=18.51 Aligned_cols=20 Identities=10% Similarity=-0.024 Sum_probs=17.5
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033665 2 KILSVLKYCVIWRAVERALG 21 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~g 21 (114)
++.|+++++.+-+.+.+.+|
T Consensus 15 ~~~K~~la~~vT~~~~~~lg 34 (69)
T COG1942 15 EEQKAELAAEVTEVTVETLG 34 (69)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 45699999999999999885
No 207
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=36.58 E-value=54 Score=27.87 Aligned_cols=34 Identities=12% Similarity=0.210 Sum_probs=25.8
Q ss_pred CCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhcc
Q 033665 69 IPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 69 v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
++|+|.+||.+-.-.-.+-|...|+.+++.|.+.
T Consensus 462 v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 462 YDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred CCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 7999999999742234456667888999988875
No 208
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=33.08 E-value=47 Score=26.25 Aligned_cols=33 Identities=24% Similarity=0.491 Sum_probs=22.3
Q ss_pred CCCcEEEcCCCC---CCCCC--hhHHHHHHHHHHHHHh
Q 033665 68 PIPQLYCCGDST---FPGIG--VPAVAASGAIVANSLV 100 (114)
Q Consensus 68 ~v~nLyl~G~~~---~PG~G--v~ga~~sg~~~a~~i~ 100 (114)
.+||||+||--. -+-+| +.-|..||+.|++.+.
T Consensus 335 ~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~ 372 (376)
T TIGR03862 335 ARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVH 372 (376)
T ss_pred cCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHH
Confidence 399999999542 23344 4466678888887653
No 209
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=33.00 E-value=52 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=22.6
Q ss_pred CCC-CCCcEEEcCCCCCC-CCCh----hHHHHHHHHHHHHHh
Q 033665 65 HST-PIPQLYCCGDSTFP-GIGV----PAVAASGAIVANSLV 100 (114)
Q Consensus 65 ~~t-~v~nLyl~G~~~~P-G~Gv----~ga~~sg~~~a~~i~ 100 (114)
.++ ..+|+|.+||.+.. .... ..|+..|+.+|+.|.
T Consensus 266 l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A~~~g~~~a~ni~ 307 (364)
T TIGR03169 266 LQSLSHPHVFAAGDCAVITDAPRPKAGVYAVRQAPILAANLR 307 (364)
T ss_pred cccCCCCCEEEeeeeeecCCCCCCCchHHHHHhHHHHHHHHH
Confidence 355 79999999999732 1111 135566777766664
No 210
>KOG1593 consensus Asparaginase [Amino acid transport and metabolism]
Probab=32.83 E-value=66 Score=24.78 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCceeEEEeC
Q 033665 6 VLKYCVIWRAVERALGPGFCRDKCDVKFVG 35 (114)
Q Consensus 6 ~~~~~~il~~l~~~~gP~i~~~~I~~~~~~ 35 (114)
++.++..|.+|.+++ |+| ...++..++.
T Consensus 286 ~eAa~~~i~RI~khf-p~F-~gAvia~n~~ 313 (349)
T KOG1593|consen 286 AEAAQKAISRILKHF-PDF-SGAVIAANVL 313 (349)
T ss_pred HHHHHHHHHHHHHhC-ccc-eeeEEEEecc
Confidence 467889999999999 999 7877776654
No 211
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=32.38 E-value=98 Score=17.42 Aligned_cols=20 Identities=10% Similarity=-0.117 Sum_probs=16.8
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033665 2 KILSVLKYCVIWRAVERALG 21 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~g 21 (114)
.+.|+++.+.|-+.+.+.+|
T Consensus 14 ~eqk~~l~~~it~~l~~~lg 33 (64)
T PRK01964 14 EEKIKNLIREVTEAISATLD 33 (64)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 36789999999999998874
No 212
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=31.71 E-value=23 Score=24.08 Aligned_cols=18 Identities=28% Similarity=0.541 Sum_probs=13.8
Q ss_pred CCCCCCCCcEEEcCCCCC
Q 033665 63 PGHSTPIPQLYCCGDSTF 80 (114)
Q Consensus 63 p~~~t~v~nLyl~G~~~~ 80 (114)
+..+|.++|+|.+||.+.
T Consensus 181 ~~~~t~~~~Iya~GD~a~ 198 (201)
T PF07992_consen 181 ENLQTSVPGIYAAGDCAG 198 (201)
T ss_dssp TTSBBSSTTEEE-GGGBE
T ss_pred cccccccccccccccccc
Confidence 455778999999999864
No 213
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=31.19 E-value=12 Score=29.83 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=24.9
Q ss_pred CCcEEEcCCCC--------CCCCChhHHHHHHHHHHHHHhcc
Q 033665 69 IPQLYCCGDST--------FPGIGVPAVAASGAIVANSLVSV 102 (114)
Q Consensus 69 v~nLyl~G~~~--------~PG~Gv~ga~~sg~~~a~~i~~~ 102 (114)
++|||.+|.-. +-|+||.. .+|..+++.|.++
T Consensus 377 ~eNL~aiGavlgGfdpi~egcGsGVai--vta~~aa~qi~~~ 416 (421)
T COG3075 377 IENLYAIGAVLGGFDPIAEGCGSGVAI--VTALHAAEQIAER 416 (421)
T ss_pred HHHHHHHHHHhcCCcHHHhcCCcchHH--HHHHHHHHHHHHH
Confidence 99999999753 33667755 5999999998875
No 214
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=30.50 E-value=1.7e+02 Score=19.70 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=23.0
Q ss_pred HHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHH
Q 033665 10 CVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRF 43 (114)
Q Consensus 10 ~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~ 43 (114)
.++++.+.+.+ | ++.|+..+..+...|...
T Consensus 2 ~~~~~~l~~~l-~---~~~iiv~d~g~~~~~~~~ 31 (172)
T cd02004 2 YRVLHELQEAL-P---DDAIIVSDGGNTMDWARY 31 (172)
T ss_pred HHHHHHHHHHC-C---CCcEEEEcCchHHHHHHH
Confidence 35788888888 7 567888998887776654
No 215
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=30.42 E-value=1.1e+02 Score=19.56 Aligned_cols=31 Identities=10% Similarity=0.054 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeC
Q 033665 3 ILSVLKYCVIWRAVERALGPGFCRDKCDVKFVG 35 (114)
Q Consensus 3 ~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~ 35 (114)
+.|+++.+.|-+.+++.+ ++..++|-....-
T Consensus 72 e~k~~l~~~i~~~l~~~l--gi~~~rv~I~f~~ 102 (116)
T PTZ00397 72 SNNSSIAAAITKILASHL--KVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHHHh--CcCcccEEEEEEE
Confidence 568899999999999987 4535555544433
No 216
>COG0418 PyrC Dihydroorotase [Nucleotide transport and metabolism]
Probab=29.97 E-value=88 Score=24.53 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHH
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLT 39 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t 39 (114)
.+.+.+.+++-+.+.+ |.+ +|+.+++.|-..
T Consensus 151 E~~Fi~~vl~pl~~~f-P~L---KIV~EHiTT~da 181 (344)
T COG0418 151 EAAFIESVLEPLRQRF-PKL---KIVLEHITTKDA 181 (344)
T ss_pred HHHHHHHHHHHHHhhC-Ccc---eEEEEEeccHHH
Confidence 3478899999999999 988 488777776443
No 217
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=28.45 E-value=2.4e+02 Score=23.51 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=19.4
Q ss_pred HHHHHHHHHhCCCCCCCceeEEEeCCHHHHHH
Q 033665 11 VIWRAVERALGPGFCRDKCDVKFVGTPLTHQR 42 (114)
Q Consensus 11 ~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~ 42 (114)
.+++.+.+.+ | ++.|+..++.+...|-.
T Consensus 363 ~v~~~l~~~~-~---~daiv~~d~G~~~~w~a 390 (550)
T COG0028 363 YVIKVLRELL-P---DDAIVVTDVGQHQMWAA 390 (550)
T ss_pred HHHHHHHHhC-C---CCeEEEeCCcHHHHHHH
Confidence 5666677666 5 36688888888777554
No 218
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=28.44 E-value=1.2e+02 Score=17.02 Aligned_cols=20 Identities=10% Similarity=-0.150 Sum_probs=17.4
Q ss_pred hhHHHHHHHHHHHHHHHHhC
Q 033665 2 KILSVLKYCVIWRAVERALG 21 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~g 21 (114)
++.|+++.+.+.+.+.+.+|
T Consensus 14 ~EqK~~L~~~it~a~~~~~~ 33 (60)
T PRK02289 14 QEQKNALAREVTEVVSRIAK 33 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 46799999999999999883
No 219
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=28.39 E-value=43 Score=19.63 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCCCCCceeEEEeCCHHHHH
Q 033665 10 CVIWRAVERALGPGFCRDKCDVKFVGTPLTHQ 41 (114)
Q Consensus 10 ~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~ 41 (114)
+....++++.+ |++ ..|++.-+.+|.+..
T Consensus 6 ~~~~~r~~e~F-p~~--slvef~g~~~PvtI~ 34 (60)
T PF05265_consen 6 ESAASRFEEKF-PHY--SLVEFSGVATPVTIR 34 (60)
T ss_pred HHHHHHHHHHC-CCc--eEEEEeCCCCceEEE
Confidence 45566778888 987 679999999998864
No 220
>PRK06996 hypothetical protein; Provisional
Probab=27.98 E-value=1e+02 Score=23.86 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=26.7
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~~ 101 (114)
-.++.++||.+|+ |.|+..++..+...|..+..
T Consensus 290 ~grv~LiGDAAH~~~P~~GQG~n~ai~Da~~La~~L~~ 327 (398)
T PRK06996 290 NGRIAAVGNAAQTLHPVAGQGLNLGLRDAHTLADALSD 327 (398)
T ss_pred cCCEEEEEhhhccCCcccchhHHHHHHHHHHHHHHHHh
Confidence 4689999998754 56888888999999988854
No 221
>PF03555 Flu_C_NS2: Influenza C non-structural protein (NS2); InterPro: IPR005188 The influenza C virus genome consists of seven single-stranded RNA segments. The shortest RNA segment encodes a 286 amino acid non-structural protein NS1 IPR005187 from INTERPRO as well as the NS2 protein. The NS2 protein is only about 60 amino acids in length and of unknown function.
Probab=27.86 E-value=31 Score=19.24 Aligned_cols=18 Identities=11% Similarity=0.045 Sum_probs=14.9
Q ss_pred CCceeEEEeCCHHHHHHH
Q 033665 26 RDKCDVKFVGTPLTHQRF 43 (114)
Q Consensus 26 ~~~I~~~~~~TP~t~~~~ 43 (114)
+.++.......|.||++-
T Consensus 37 karlrtessfaprtweda 54 (57)
T PF03555_consen 37 KARLRTESSFAPRTWEDA 54 (57)
T ss_pred HHHhhcccccCcccHHhh
Confidence 667788888999999874
No 222
>PRK08244 hypothetical protein; Provisional
Probab=27.82 E-value=52 Score=26.32 Aligned_cols=31 Identities=16% Similarity=0.272 Sum_probs=24.8
Q ss_pred CcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHh
Q 033665 70 PQLYCCGDSTFP-----GIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 70 ~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~ 100 (114)
.+++++||.+|+ |.|+..++..+.+.+.++.
T Consensus 272 gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~La~~La 307 (493)
T PRK08244 272 GRIFLAGDAAHIHFPAGGQGLNVGLQDAMNLGWKLA 307 (493)
T ss_pred CcEEEeecceeccCCccccccccchhhHHHHHHHHH
Confidence 589999999865 6788888888877776654
No 223
>COG2075 RPL24A Ribosomal protein L24E [Translation, ribosomal structure and biogenesis]
Probab=27.71 E-value=27 Score=20.86 Aligned_cols=18 Identities=33% Similarity=0.567 Sum_probs=14.4
Q ss_pred cEEEcCCCCCCCCChhHH
Q 033665 71 QLYCCGDSTFPGIGVPAV 88 (114)
Q Consensus 71 nLyl~G~~~~PG~Gv~ga 88 (114)
.=+|||..+.||.|+.-|
T Consensus 5 ~CsFcG~~I~PGtG~m~V 22 (66)
T COG2075 5 VCSFCGKKIEPGTGIMYV 22 (66)
T ss_pred EecCcCCccCCCceEEEE
Confidence 347899999999998644
No 224
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=27.53 E-value=75 Score=24.48 Aligned_cols=32 Identities=31% Similarity=0.400 Sum_probs=26.3
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHh
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~ 100 (114)
-.++.|+||.+|+ |.|+..++..+...+..+.
T Consensus 284 ~~rv~LlGDAAH~~~P~~GQG~n~al~DA~~La~~L~ 320 (405)
T PRK05714 284 EPGLALIGDAAHTIHPLAGQGVNLGFLDAAVLAEVLL 320 (405)
T ss_pred cCCEEEEEeccccCCCcccccccHHHHHHHHHHHHHH
Confidence 3689999999765 6788888988888888774
No 225
>PF06183 DinI: DinI-like family; InterPro: IPR010391 This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity []. The structure of DinI is known [].; PDB: 1GHH_A.
Probab=27.11 E-value=1.4e+02 Score=17.52 Aligned_cols=28 Identities=11% Similarity=0.012 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCceeEEEeC
Q 033665 4 LSVLKYCVIWRAVERALGPGFCRDKCDVKFVG 35 (114)
Q Consensus 4 ~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~ 35 (114)
..+.+...+..+|.+.| |+. .|.++..+
T Consensus 5 a~~AL~~EL~kRl~~~y-Pd~---~v~Vr~~s 32 (65)
T PF06183_consen 5 ALEALESELTKRLHRQY-PDA---EVRVRPGS 32 (65)
T ss_dssp HHHHHHHHHHHHHHHH--SS----EEEEEEES
T ss_pred HHHHHHHHHHHHHHHHC-CCc---eEeeeecc
Confidence 45678888889999999 987 45555443
No 226
>PLN02785 Protein HOTHEAD
Probab=27.09 E-value=1.9e+02 Score=24.18 Aligned_cols=40 Identities=15% Similarity=0.147 Sum_probs=29.3
Q ss_pred CCCCC-CCCcEEEcCCCCCCCCC----hhHHHHHHHHHHHHHhcc
Q 033665 63 PGHST-PIPQLYCCGDSTFPGIG----VPAVAASGAIVANSLVSV 102 (114)
Q Consensus 63 p~~~t-~v~nLyl~G~~~~PG~G----v~ga~~sg~~~a~~i~~~ 102 (114)
+..+. .++||+.|-+|++|-.. ...+++-|..+|+.|+++
T Consensus 535 ~~lrV~GV~~LRVvDaSi~P~~p~~np~atv~miaer~A~~Il~~ 579 (587)
T PLN02785 535 QNYKVLGVSRLRVIDGSTFDESPGTNPQATVMMMGRYMGVKILRE 579 (587)
T ss_pred CCCeEeccCCeEEeecccCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 44553 59999999999977532 235667788899888875
No 227
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=26.88 E-value=29 Score=27.31 Aligned_cols=35 Identities=14% Similarity=-0.012 Sum_probs=27.6
Q ss_pred CCcEEEcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 69 IPQLYCCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 69 v~nLyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
-+|||.+.+-=+-.+=+-+.+++|+++|..+..+.
T Consensus 314 ~~glyY~n~iE~~aStME~sai~akNvA~L~~~~~ 348 (368)
T PF07156_consen 314 HDGLYYTNAIESAASTMETSAIAAKNVALLIYDRW 348 (368)
T ss_pred eCCeeEchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999998775445677788899999999988554
No 228
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=26.85 E-value=1.1e+02 Score=17.03 Aligned_cols=19 Identities=11% Similarity=-0.064 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033665 2 KILSVLKYCVIWRAVERAL 20 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~ 20 (114)
++.|+++.+.++..+..++
T Consensus 14 eE~k~kmR~dvissvrnFl 32 (51)
T PF15178_consen 14 EEMKRKMREDVISSVRNFL 32 (51)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5778999999999888753
No 229
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=26.24 E-value=74 Score=25.76 Aligned_cols=38 Identities=18% Similarity=0.025 Sum_probs=25.0
Q ss_pred CCCC-CCcEEEcCCCCCCCCChhHH----HHHHHHHHHHHhccc
Q 033665 65 HSTP-IPQLYCCGDSTFPGIGVPAV----AASGAIVANSLVSVS 103 (114)
Q Consensus 65 ~~t~-v~nLyl~G~~~~PG~Gv~ga----~~sg~~~a~~i~~~~ 103 (114)
.++. ++|||++||=+- -.|..=+ +++|.++|..+.+++
T Consensus 324 l~~k~~~~lf~AGQi~G-~~GY~Eaaa~Gl~agina~~~~~~~~ 366 (433)
T TIGR00137 324 LHFKDRQTLFFAGQLTG-VEGYVASTAGGWLAGINAARLALGEP 366 (433)
T ss_pred hccCCCCCEEECccccc-chHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3443 899999999862 1233212 457888888887765
No 230
>PF10107 Endonuc_Holl: Endonuclease related to archaeal Holliday junction resolvase; InterPro: IPR019287 This domain is found in various predicted bacterial endonucleases which are distantly related to archaeal Holliday junction resolvases.
Probab=25.93 E-value=29 Score=24.25 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=25.9
Q ss_pred HHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCC
Q 033665 11 VIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGT 50 (114)
Q Consensus 11 ~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~ 50 (114)
++-+++.=++ |+|.-+-=..+++.+|.||--|.+...|.
T Consensus 77 kv~EqlaP~l-p~F~ynP~D~RFlG~PVD~IvF~Gls~~~ 115 (156)
T PF10107_consen 77 KVSEQLAPFL-PEFPYNPKDARFLGSPVDFIVFDGLSDGN 115 (156)
T ss_pred hhHHHhhhcc-CCCCCChhhheecCCCceEEEEcCCCCCC
Confidence 3444445556 77755556778888888888777766653
No 231
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=25.88 E-value=2.3e+02 Score=19.70 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHH-HhCC
Q 033665 10 CVIWRAVERALGPGFCRDKCDVKFVGTPLTHQR-FLRR 46 (114)
Q Consensus 10 ~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~-~~~~ 46 (114)
.++++.|.+.+ | ++.|+..+..+...|.. +...
T Consensus 7 ~~~~~~l~~~l-~---~~~ivv~d~G~~~~~~~~~~~~ 40 (196)
T cd02013 7 RQVLRELEKAM-P---EDAIVSTDIGNICSVANSYLRF 40 (196)
T ss_pred HHHHHHHHHHC-C---CCEEEEECCcHHHHHHHHhcCc
Confidence 45788888888 7 56788888888766554 4443
No 232
>PRK06753 hypothetical protein; Provisional
Probab=25.05 E-value=1e+02 Score=23.28 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=26.4
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHh
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~ 100 (114)
-.++.++||.+|+ |.|+..++..+...++.+.
T Consensus 269 ~~rv~LiGDAAh~~~P~~GqG~n~ai~Da~~L~~~L~ 305 (373)
T PRK06753 269 YGRIVLLGDAAHATTPNMGQGAGQAMEDAIVLANCLN 305 (373)
T ss_pred CCCEEEEecccccCCCCcCccHHHHHHHHHHHHHHhh
Confidence 3689999999854 6788899999999888774
No 233
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=24.98 E-value=97 Score=25.55 Aligned_cols=40 Identities=20% Similarity=0.255 Sum_probs=26.8
Q ss_pred CCCCC-CCCcEEEcCCCCCCCC-Chh---HHHHHHHHHHHHHhcc
Q 033665 63 PGHST-PIPQLYCCGDSTFPGI-GVP---AVAASGAIVANSLVSV 102 (114)
Q Consensus 63 p~~~t-~v~nLyl~G~~~~PG~-Gv~---ga~~sg~~~a~~i~~~ 102 (114)
|..|. .++|||.+++|++|-. ++. .+++=|..+|+.|+++
T Consensus 492 ~~lrv~g~~nL~VvDaSvmPt~~~~Np~~ti~ala~raA~~I~~~ 536 (542)
T COG2303 492 PYLRVHGLENLRVVDASVMPTSTGVNPNLTIIALAERAADHILGD 536 (542)
T ss_pred cccccccCCCeEEeCcccCcCccCCCccHhHHHHHHHHHHHHhhc
Confidence 44554 4999999999998864 222 3334566677777763
No 234
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=24.17 E-value=1e+02 Score=23.72 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=27.2
Q ss_pred CCcEEEcCCCCC-----CCCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDSTF-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
-.++.++||.+| -|.|+..++..|...++.+..
T Consensus 293 ~~rv~LvGDAAh~~~P~~GqG~n~al~DA~~La~~L~~ 330 (415)
T PRK07364 293 QHRLALVGDAAHCCHPVGGQGLNLGIRDAAALAQVLQT 330 (415)
T ss_pred CCcEEEEecccccCCCcccccHhHHHHHHHHHHHHHHH
Confidence 479999999963 268999999999999988853
No 235
>PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A ....
Probab=24.10 E-value=1.1e+02 Score=21.83 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHH
Q 033665 6 VLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQ 41 (114)
Q Consensus 6 ~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~ 41 (114)
.+..|.+++.+.+.+||+. -|.++++.+|..|+
T Consensus 144 ~~fvdefv~av~~~~gp~~---~IqfEDf~~~nAf~ 176 (182)
T PF00390_consen 144 DEFVDEFVEAVKRRFGPNA---LIQFEDFSNPNAFR 176 (182)
T ss_dssp HHHHHHHHHHHHHHHGCTS---EEEE-S--CCHHHH
T ss_pred hhCHHHHHHHHHHHhCCCe---EEEEecCCChhHHH
Confidence 4678888889988886744 69999999987664
No 236
>PRK06184 hypothetical protein; Provisional
Probab=23.90 E-value=86 Score=25.16 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=23.4
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHH
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSL 99 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i 99 (114)
-.+++++||.+|+ |.|+..++..|.+.+.++
T Consensus 280 ~gRv~L~GDAAH~~~P~~GqG~n~gi~DA~~LawkL 315 (502)
T PRK06184 280 VGRVFLAGDAAHVHPPAGGQGLNTSVQDAYNLGWKL 315 (502)
T ss_pred CCcEEEeccccccCCCcccccccchHHHHHHHHHHH
Confidence 4689999999865 568888887777766554
No 237
>cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif. HhH2 domains are found in Rad2 family of prokaryotic and eukaryotic replication and repair nucleases, i.e., DNA polymerase I, Taq DNA polymerase, DNA repair protein Rad2 endonuclease, flap endonuclease, exonuclease I and IX, 5'-3' exonuclease and also bacteriophage Rnase H. These nucleases degrade RNA-DNA or DNA-DNA duplexes, or both and play essential roles in DNA duplication, repair, and recombination.
Probab=23.73 E-value=84 Score=18.71 Aligned_cols=27 Identities=30% Similarity=0.329 Sum_probs=13.8
Q ss_pred EcCCCCCCCCChhHHHHHHHHHHHHHhccc
Q 033665 74 CCGDSTFPGIGVPAVAASGAIVANSLVSVS 103 (114)
Q Consensus 74 l~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~ 103 (114)
++||++-=-+||||+ |...|..++.+.
T Consensus 16 L~GD~~D~i~gv~gi---G~k~A~~ll~~~ 42 (75)
T cd00080 16 LVGDKSDNIPGVPGI---GPKTALKLLKEY 42 (75)
T ss_pred HcCCccccCCCCCcc---cHHHHHHHHHHh
Confidence 567554223578884 444444444443
No 238
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=23.58 E-value=1e+02 Score=23.40 Aligned_cols=32 Identities=19% Similarity=0.290 Sum_probs=26.7
Q ss_pred CcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHhc
Q 033665 70 PQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 70 ~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~~ 101 (114)
.++.++||.+|+ |.|+..++..+.+.++.+..
T Consensus 276 ~rv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~~ 312 (382)
T TIGR01984 276 PRVVLIGNAAQTLHPIAGQGFNLGLRDVETLAEVLID 312 (382)
T ss_pred CCEEEEeecccccCCccccchhhhHHHHHHHHHHHHH
Confidence 789999999643 67899999999999888754
No 239
>PF02962 CHMI: 5-carboxymethyl-2-hydroxymuconate isomerase; InterPro: IPR004220 5-carboxymethyl-2-hydroxymuconate isomerase transforms 5-carboxymethyl-2-hydroxy-muconic acid into 5-oxo-pent-3-ene-1,2,5-tricarboxylic acid during the third step of the homoprotocatechuate catabolic pathway []. Homoprotocatechuate (HPC; 3,4-dihydroxyphenylacetate) is catabolized to Krebs cycle intermediates via extradiol (meta-) cleavage and the necessary enzymes are chromosomally encoded in a variety of bacteria []. 5-carboxymethyl-2-hydroxymuconate isomerase is probably a dimer of two identical subunits []. A comparison of the N-terminal half of the isomerase/decarboxylase sequence from the pathway (both encoded by the gene hpcE), with the second half showed significant similarity. This suggests that a duplication may have occurred to produce a bifunctional gene [].; PDB: 3E6Q_H 1OTG_B.
Probab=23.41 E-value=1.4e+02 Score=19.80 Aligned_cols=19 Identities=5% Similarity=-0.095 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHh
Q 033665 2 KILSVLKYCVIWRAVERAL 20 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~ 20 (114)
++.|+++.+++++.+.+++
T Consensus 73 ~e~k~~l~~~l~~~l~~~~ 91 (124)
T PF02962_consen 73 EEQKKALSEALLAVLKAHL 91 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4679999999999999987
No 240
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=22.88 E-value=68 Score=23.47 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=25.1
Q ss_pred CcEEEcCCCCC-----CCCChhHHHHHHHHHHHHHhc
Q 033665 70 PQLYCCGDSTF-----PGIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 70 ~nLyl~G~~~~-----PG~Gv~ga~~sg~~~a~~i~~ 101 (114)
.++.++||.+| -|.|+-.++..|...+..+..
T Consensus 291 grv~LiGDAAh~~~P~~GqG~n~Ai~da~~La~~L~~ 327 (356)
T PF01494_consen 291 GRVLLIGDAAHAMDPFSGQGINMAIEDAAALAELLAA 327 (356)
T ss_dssp TTEEE-GGGTEEE-CCTSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEeccceeeecccccCCCCcccccHHHHHHHHHH
Confidence 47999999974 366888899999998888764
No 241
>PRK14976 5'-3' exonuclease; Provisional
Probab=22.46 E-value=65 Score=24.35 Aligned_cols=31 Identities=26% Similarity=0.176 Sum_probs=18.7
Q ss_pred EEEcCCCCCCCCChhHHHHHHHHHHHHHhcccch
Q 033665 72 LYCCGDSTFPGIGVPAVAASGAIVANSLVSVSQH 105 (114)
Q Consensus 72 Lyl~G~~~~PG~Gv~ga~~sg~~~a~~i~~~~~~ 105 (114)
+-++||++-=-+||||+ |-.+|..++.+...
T Consensus 183 ~aL~GD~sDnipGVpGI---G~KtA~~LL~~~gs 213 (281)
T PRK14976 183 KGLVGDSSDNIKGVKGI---GPKTAIKLLNKYGN 213 (281)
T ss_pred HHHhCCccCCCCCCCcc---cHHHHHHHHHHcCC
Confidence 44689876435788885 55555555554433
No 242
>smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs.
Probab=22.35 E-value=52 Score=16.95 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=12.1
Q ss_pred EcCCCCCCCCChhHHHHHHHHHHHHHh
Q 033665 74 CCGDSTFPGIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 74 l~G~~~~PG~Gv~ga~~sg~~~a~~i~ 100 (114)
++||.+-=-+|++|+ |...|..++
T Consensus 10 L~GD~~dni~Gv~gi---G~ktA~~ll 33 (36)
T smart00279 10 LVGDYSDNIPGVKGI---GPKTALKLL 33 (36)
T ss_pred HhCcCCCCCCCCCcc---cHHHHHHHH
Confidence 466554322467764 444444444
No 243
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=22.35 E-value=1.1e+02 Score=23.29 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=26.5
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHh
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~ 100 (114)
-.++.++||.+|+ |.|+..++..|...|+.+.
T Consensus 281 ~grv~LvGDAAh~~~P~~GqG~~~al~Da~~La~~L~ 317 (395)
T PRK05732 281 SHRLALVGNAAQTLHPIAGQGFNLGLRDVMSLAETLT 317 (395)
T ss_pred cCcEEEEeecccccCCccccccchHHHHHHHHHHHHH
Confidence 4689999999743 6788889999999998883
No 244
>PLN02422 dephospho-CoA kinase
Probab=22.21 E-value=65 Score=23.71 Aligned_cols=18 Identities=39% Similarity=0.829 Sum_probs=14.8
Q ss_pred CCHHHHHHHhCCCCCCCC
Q 033665 35 GTPLTHQRFLRRNRGTYG 52 (114)
Q Consensus 35 ~TP~t~~~~~~~~~G~~G 52 (114)
.+|+||..|..+..|+|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~ 213 (232)
T PLN02422 196 RAPLTWKEFLRSRQGAFS 213 (232)
T ss_pred hcchHHHHHHhcccccch
Confidence 389999999998888753
No 245
>PRK06185 hypothetical protein; Provisional
Probab=21.68 E-value=1.2e+02 Score=23.28 Aligned_cols=33 Identities=33% Similarity=0.653 Sum_probs=26.1
Q ss_pred CCcEEEcCCCCC---C--CCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDSTF---P--GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~~---P--G~Gv~ga~~sg~~~a~~i~~ 101 (114)
-+++.++||.+| | |.|+..++..+...++.+..
T Consensus 283 ~~rv~LvGDAAh~~~P~~GqG~nlgl~Da~~La~~l~~ 320 (407)
T PRK06185 283 RPGLLCIGDAAHAMSPVGGVGINLAIQDAVAAANILAE 320 (407)
T ss_pred CCCeEEEeccccccCcccccchhHHHHHHHHHHHHHHH
Confidence 378999999863 3 67999888888888877753
No 246
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=21.60 E-value=1e+02 Score=26.24 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=23.5
Q ss_pred CCCCC-CCcEEEcCCCCCCCCChhHH----HHHHHHHHHHHh
Q 033665 64 GHSTP-IPQLYCCGDSTFPGIGVPAV----AASGAIVANSLV 100 (114)
Q Consensus 64 ~~~t~-v~nLyl~G~~~~PG~Gv~ga----~~sg~~~a~~i~ 100 (114)
...+. ++|||++||=.- -.|..=| +++|.+||..+.
T Consensus 353 ~Le~k~~~~lf~AGQinG-t~GYeEaaaqGl~AgiNaa~~~~ 393 (618)
T PRK05192 353 TLETKKIKGLFFAGQING-TTGYEEAAAQGLIAGINAALKVQ 393 (618)
T ss_pred hheecCCCCeEECcccCC-ChHHHHHHHHHHHHHHHHHHHhc
Confidence 34444 999999999752 1233211 367888888876
No 247
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=21.58 E-value=63 Score=23.61 Aligned_cols=43 Identities=14% Similarity=0.012 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCC
Q 033665 3 ILSVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNR 48 (114)
Q Consensus 3 ~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~ 48 (114)
+.|+.|.+.+-.+...-- .+ .+...-.+.+||.|.+||+..+.
T Consensus 57 ~aK~~Y~~ai~~Rs~sQr--Ev-n~LLqRK~sWs~~DleRFT~Lyr 99 (207)
T PF05546_consen 57 EAKAAYDDAIQQRSSSQR--EV-NELLQRKHSWSPADLERFTELYR 99 (207)
T ss_pred HHHHHHHHHHHHHHHHHH--HH-HHHHhcccCCChHHHHHHHHHHH
Confidence 457777777777663210 22 33456678899999999988754
No 248
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=21.48 E-value=3e+02 Score=19.32 Aligned_cols=29 Identities=14% Similarity=0.158 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHH
Q 033665 10 CVIWRAVERALGPGFCRDKCDVKFVGTPLTHQR 42 (114)
Q Consensus 10 ~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~ 42 (114)
+++++.|.+.+ | ++.|+..+..++..|-.
T Consensus 2 ~~~~~~l~~~l-~---~~~ivv~d~G~~~~~~~ 30 (205)
T cd02003 2 TEVLGALNEAI-G---DDDVVINAAGSLPGDLH 30 (205)
T ss_pred hhHHHHHHHhC-C---CCCEEEECCCcchHHHH
Confidence 46788888888 7 56788899888776554
No 249
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=21.46 E-value=1.1e+02 Score=23.34 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=27.6
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~~ 101 (114)
-.++.++||.+|+ |.|+..++..+...++.+.+
T Consensus 280 ~~rv~LvGDAAH~~~P~~GqG~n~al~Da~~La~~L~~ 317 (391)
T PRK08020 280 QPGLALVGDAAHTINPLAGQGVNLGYRDVDALLDVLVN 317 (391)
T ss_pred cCcEEEEechhhccCCcccchhHHHHHHHHHHHHHHHH
Confidence 4789999999743 67999999999998888864
No 250
>cd00580 CHMI 5-carboxymethyl-2-hydroxymuconate isomerase (CHMI) is a trimeric enzyme catalyzing the isomerization of the unsaturated ketone 5-(carboxymethyl)-2-hydroxymuconate to 5-(carboxymethyl)-2-oxo-3-hexene-1,6-dionate. This is one step in the homoprotocatechuate pathway, one of the microbial meta-fission pathways that degrade aromatic carbon sources to citric acid cycle intermediates. Despite the structural similarity of CHMI with 4-oxalocrotonate tautomerase (4-OT) and macrophage migration inhibitory factor (MIF), there is no significant sequence similarity among these protein families, and therefore, they are not combined in one hierarchy.
Probab=21.45 E-value=1.2e+02 Score=19.37 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCC
Q 033665 2 KILSVLKYCVIWRAVERALGPGF 24 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i 24 (114)
++.|+++.+.+.+.+.+.+++.+
T Consensus 73 ~eqK~~l~~~i~~~l~~~~~~~~ 95 (113)
T cd00580 73 EEQKQELSEALLAALRAHLAPVF 95 (113)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Confidence 46799999999999999884444
No 251
>KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism]
Probab=21.41 E-value=52 Score=24.56 Aligned_cols=38 Identities=24% Similarity=0.184 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRR 46 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~ 46 (114)
|.++...+-+++-+.+ ++ |.|...++.||.||.++.+.
T Consensus 84 k~RiGHFVEAQIlE~l--~v--DYiDESEvlt~AD~~hhI~K 121 (296)
T KOG1606|consen 84 KVRIGHFVEAQILEAL--GV--DYIDESEVLTPADWDHHIEK 121 (296)
T ss_pred hhhhhhhhHHHHHHHh--cc--Cccchhhhcccccccchhhh
Confidence 4455555555554444 34 77999999999999887653
No 252
>PF03332 PMM: Eukaryotic phosphomannomutase; InterPro: IPR005002 This enzyme (5.4.2.8 from EC) is involved in the synthesis of the GDP-mannose and dolichol-phosphate-mannose required for a number of critical mannosyl transfer reactions.; GO: 0004615 phosphomannomutase activity, 0019307 mannose biosynthetic process, 0005737 cytoplasm; PDB: 2I55_B 2I54_C 3F9R_A 2FUE_A 2FUC_A 2AMY_A 2Q4R_A.
Probab=21.31 E-value=32 Score=25.36 Aligned_cols=91 Identities=15% Similarity=0.168 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHHHhCCCCCC---CCCCCCCCCcCCCCCCCCCCcEEEcCCCCCC
Q 033665 5 SVLKYCVIWRAVERALGPGFCRDKCDVKFVGTPLTHQRFLRRNRGT---YGPAIQAGKETFPGHSTPIPQLYCCGDSTFP 81 (114)
Q Consensus 5 K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~~~~~~~G~---~G~~~~~~q~~~p~~~t~v~nLyl~G~~~~P 81 (114)
+....+++++.|.+.+ |++ . +.++.-.+ .++ .-.+.|. |+..+ .... .++.++|.||-+.|
T Consensus 124 ~~~iR~~~v~~L~~~f-~d~-~--L~~siGGq-iSi---Dvfp~GwDKty~Lr~-------l~~~-~~~~I~FfGDkt~p 187 (220)
T PF03332_consen 124 KHKIREKLVEALKKEF-PDF-G--LTFSIGGQ-ISI---DVFPKGWDKTYCLRH-------LEDE-GFDEIHFFGDKTFP 187 (220)
T ss_dssp HHTHHHHHHHHHHHHT-CCC-S--EEEEEETT-TEE---EEEETT-SGGGGGGG-------TTTT-T-SEEEEEESS-ST
T ss_pred hhhHHHHHHHHHHHHC-CCC-c--eEEecCCc-eEE---ccccCCccHHHHHHH-------HHhc-ccceEEEEehhccC
Confidence 4556789999999999 986 2 33222111 000 0011221 22221 1111 28999999999999
Q ss_pred CCChhHHHHHHHHHHHHHhcccchHHHHHh
Q 033665 82 GIGVPAVAASGAIVANSLVSVSQHSELLDA 111 (114)
Q Consensus 82 G~Gv~ga~~sg~~~a~~i~~~~~~~~~~~~ 111 (114)
|+-=--+....+..+..|...++..+.|++
T Consensus 188 GGNDyei~~~~rt~g~~V~~p~DT~~~l~~ 217 (220)
T PF03332_consen 188 GGNDYEIFEDPRTIGHTVTSPEDTIKQLKE 217 (220)
T ss_dssp TSTTHHHHHSTTSEEEE-SSHHHHHHHHHH
T ss_pred CCCCceeeecCCccEEEeCCHHHHHHHHHH
Confidence 975433333333444445555555555544
No 253
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=21.06 E-value=2.7e+02 Score=18.71 Aligned_cols=29 Identities=28% Similarity=0.078 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhCCCCCCCceeEEEeCCHHHHHH
Q 033665 10 CVIWRAVERALGPGFCRDKCDVKFVGTPLTHQR 42 (114)
Q Consensus 10 ~~il~~l~~~~gP~i~~~~I~~~~~~TP~t~~~ 42 (114)
+++++.|.+.+ | .+.++..+..+...|..
T Consensus 4 ~~~~~~l~~~l-~---~~~~iv~d~g~~~~~~~ 32 (178)
T cd02002 4 EYLAAALAAAL-P---EDAIIVDEAVTNGLPLR 32 (178)
T ss_pred HHHHHHHHhhC-C---CCeEEEecCCcccHHHH
Confidence 45778888888 6 45677788776555544
No 254
>PF14552 Tautomerase_2: Tautomerase enzyme; PDB: 2AAG_C 2AAL_A 2AAJ_A 1MWW_C.
Probab=20.94 E-value=1.5e+02 Score=18.09 Aligned_cols=32 Identities=13% Similarity=0.128 Sum_probs=20.3
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCceeEEEeC
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKCDVKFVG 35 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~~ 35 (114)
.+.|+++...+.+.|++.. ++..+.|...-+-
T Consensus 42 ~e~K~~ly~~l~~~L~~~~--gi~p~Dv~I~l~e 73 (82)
T PF14552_consen 42 TEQKKALYRALAERLAEKL--GIRPEDVMIVLVE 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHc--CCCHHHEEEEEEE
Confidence 3679999999999998875 5534444444333
No 255
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=20.73 E-value=1.1e+02 Score=24.08 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=26.3
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHhc
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLVS 101 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~~ 101 (114)
-.++.++||.+|. |.|+-.++..+...+..+-.
T Consensus 332 ~~rv~l~GDAAH~~~P~~GqG~n~~l~Da~~La~~L~~ 369 (437)
T TIGR01989 332 TKRVALVGDAAHRVHPLAGQGVNLGFGDVASLVKALAE 369 (437)
T ss_pred CCCEEEEchhhcCCCCChhhhHHHHHHHHHHHHHHHHH
Confidence 5789999999865 67888888888888877753
No 256
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=20.30 E-value=1.7e+02 Score=17.22 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHHHHHHHhCCCCCCCceeEEEe
Q 033665 2 KILSVLKYCVIWRAVERALGPGFCRDKCDVKFV 34 (114)
Q Consensus 2 ~~~K~~~~~~il~~l~~~~gP~i~~~~I~~~~~ 34 (114)
++.|+-+.+++...+.+.. |++ ..+|...-.
T Consensus 3 ~~qkq~LGE~Lyp~V~~~~-p~~-A~KITGMLL 33 (64)
T smart00517 3 QEQKQALGERLYPKVQALE-PEL-AGKITGMLL 33 (64)
T ss_pred HHHHHHHhHHHhHHHHhhC-ccc-CCcCeeeee
Confidence 3578889999999999998 999 788876543
No 257
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=20.30 E-value=54 Score=17.16 Aligned_cols=14 Identities=7% Similarity=0.185 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhCCCC
Q 033665 10 CVIWRAVERALGPGF 24 (114)
Q Consensus 10 ~~il~~l~~~~gP~i 24 (114)
+..++.|..+| |++
T Consensus 3 ~~~v~~L~~mF-P~l 16 (43)
T smart00546 3 DEALHDLKDMF-PNL 16 (43)
T ss_pred HHHHHHHHHHC-CCC
Confidence 45788889999 999
No 258
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=20.03 E-value=1.1e+02 Score=24.82 Aligned_cols=32 Identities=22% Similarity=0.244 Sum_probs=25.1
Q ss_pred CCcEEEcCCCCCC-----CCChhHHHHHHHHHHHHHh
Q 033665 69 IPQLYCCGDSTFP-----GIGVPAVAASGAIVANSLV 100 (114)
Q Consensus 69 v~nLyl~G~~~~P-----G~Gv~ga~~sg~~~a~~i~ 100 (114)
-.+++|+||.+|+ |.|+..++.-+.+.+.++-
T Consensus 285 ~gRv~L~GDAAH~~~P~~GQG~n~gi~DA~~La~kLa 321 (538)
T PRK06183 285 SGRVLLAGDAAHLMPPFAGQGMNSGIRDAANLAWKLA 321 (538)
T ss_pred cCCEEEEechhhcCCCccccchhhhHHHHHHHHHHHH
Confidence 3589999999764 6788888888888776653
Done!