BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033666
(114 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225429803|ref|XP_002282858.1| PREDICTED: uncharacterized protein LOC100262900 [Vitis vinifera]
Length = 116
Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/112 (75%), Positives = 95/112 (84%)
Query: 1 MEQKVETTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNI 60
ME E + VESS GS+ GSN +++VR LL RRMLVG+ DGRFFLGSFHC+DKQGNI
Sbjct: 3 MEHDAEKSFIHVESSEGSNPNGSNPVTKVRMLLFRRMLVGVSDGRFFLGSFHCMDKQGNI 62
Query: 61 ILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKV 112
ILQD VEYRSTRR+SPSPMEQRCLG+ILIP SCRTSCHVDCSI+EQLSLL +
Sbjct: 63 ILQDTVEYRSTRRSSPSPMEQRCLGLILIPFSCRTSCHVDCSIEEQLSLLSL 114
>gi|224136910|ref|XP_002322446.1| predicted protein [Populus trichocarpa]
gi|222869442|gb|EEF06573.1| predicted protein [Populus trichocarpa]
Length = 109
Score = 172 bits (436), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/112 (74%), Positives = 97/112 (86%), Gaps = 4/112 (3%)
Query: 1 MEQKVETTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNI 60
ME+++E + S+ +++ S+ +SR RKLL RRMLVGIKDGRFFLGSFHCIDKQGNI
Sbjct: 1 MEEEMEISS----STQATESSSSDIVSRARKLLFRRMLVGIKDGRFFLGSFHCIDKQGNI 56
Query: 61 ILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKV 112
ILQDAVEYR+T R+SPSPMEQRCLG+ILIPSSCRTSCHVDCSI+EQLSLLK
Sbjct: 57 ILQDAVEYRNTHRSSPSPMEQRCLGLILIPSSCRTSCHVDCSIEEQLSLLKF 108
>gi|22328770|ref|NP_680719.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|332658634|gb|AEE84034.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 112
Score = 170 bits (431), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 98/115 (85%), Gaps = 4/115 (3%)
Query: 1 MEQKVETTETLVES-SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGN 59
MEQ E + T+V S S GSD + ISR+RKLL R+MLVGIKDGRFFLG+FHCIDKQGN
Sbjct: 1 MEQAAERSSTIVASTSEGSDF---DPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGN 57
Query: 60 IILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
IILQD VEYRS RR+SPSP EQRCLG+ILIPSSCRTSCHVDCSIDEQLSL+++ +
Sbjct: 58 IILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQLKE 112
>gi|297800232|ref|XP_002868000.1| hypothetical protein ARALYDRAFT_914851 [Arabidopsis lyrata subsp.
lyrata]
gi|297313836|gb|EFH44259.1| hypothetical protein ARALYDRAFT_914851 [Arabidopsis lyrata subsp.
lyrata]
Length = 112
Score = 170 bits (431), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 86/115 (74%), Positives = 98/115 (85%), Gaps = 4/115 (3%)
Query: 1 MEQKVETTETLVES-SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGN 59
MEQ E + TLV S S GSD + ISRVRKLL R+MLVGIKDGRFFLG+FHCIDKQGN
Sbjct: 1 MEQAAERSSTLVASTSQGSDL---DPISRVRKLLFRQMLVGIKDGRFFLGNFHCIDKQGN 57
Query: 60 IILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
IILQD VEYRS R++SPSP EQRCLG+ILIPSSCRTSCHVDCSI+EQLSL+++ +
Sbjct: 58 IILQDTVEYRSIRKSSPSPTEQRCLGMILIPSSCRTSCHVDCSIEEQLSLIQLKE 112
>gi|255557237|ref|XP_002519649.1| conserved hypothetical protein [Ricinus communis]
gi|223541066|gb|EEF42622.1| conserved hypothetical protein [Ricinus communis]
Length = 118
Score = 167 bits (424), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 77/89 (86%), Positives = 86/89 (96%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 85
+SRVRKLL R+MLVGIKDGRFFLG+FHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG
Sbjct: 30 VSRVRKLLFRKMLVGIKDGRFFLGTFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 89
Query: 86 IILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
+ILIP+SCRT+CHVDCSI+EQLSL K+ +
Sbjct: 90 LILIPASCRTTCHVDCSIEEQLSLFKLQE 118
>gi|357447241|ref|XP_003593896.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|357447245|ref|XP_003593898.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355482944|gb|AES64147.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355482946|gb|AES64149.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|388515765|gb|AFK45944.1| unknown [Medicago truncatula]
Length = 113
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/112 (71%), Positives = 95/112 (84%), Gaps = 2/112 (1%)
Query: 1 MEQKVETTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNI 60
MEQ+ E + + SD+ S+ +SRVRKLL R+MLVGIKDGRFFLG+F+C+DKQGNI
Sbjct: 1 MEQEAE--QPVPVQGGSSDSLESDRVSRVRKLLFRQMLVGIKDGRFFLGNFYCMDKQGNI 58
Query: 61 ILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKV 112
ILQD VEYRSTRR+SPSPMEQRC+G+ILIPSSCR SCHVDCS+DEQLSLL +
Sbjct: 59 ILQDTVEYRSTRRSSPSPMEQRCIGLILIPSSCRMSCHVDCSVDEQLSLLSL 110
>gi|356549110|ref|XP_003542940.1| PREDICTED: uncharacterized protein LOC100792908 [Glycine max]
Length = 107
Score = 166 bits (419), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/103 (78%), Positives = 91/103 (88%), Gaps = 7/103 (6%)
Query: 12 VESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST 71
VE S+G+ +SR RKLL RRMLVGIKDGRFFLGSF+CIDKQGNIILQDAVEYRST
Sbjct: 8 VEGSSGT-------VSRARKLLFRRMLVGIKDGRFFLGSFYCIDKQGNIILQDAVEYRST 60
Query: 72 RRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
R++SPSPMEQRCLG+ILIPSSCRTSCHVDC+I EQLSLL ++Q
Sbjct: 61 RQSSPSPMEQRCLGLILIPSSCRTSCHVDCAIHEQLSLLSLNQ 103
>gi|449439179|ref|XP_004137364.1| PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus]
gi|449523864|ref|XP_004168943.1| PREDICTED: uncharacterized protein LOC101229488 [Cucumis sativus]
Length = 112
Score = 165 bits (418), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 79/112 (70%), Positives = 94/112 (83%)
Query: 1 MEQKVETTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNI 60
MEQ+ + S+ S+ + +HI +VRKLL RRML+GIKDGRFFLG+F+CIDKQGNI
Sbjct: 1 MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
Query: 61 ILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKV 112
ILQDAVEYRSTRR+SPSPMEQRCLG+ILIP+SCR SCHVD +IDEQL+LL V
Sbjct: 61 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112
>gi|388502276|gb|AFK39204.1| unknown [Lotus japonicus]
Length = 111
Score = 156 bits (394), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/82 (89%), Positives = 78/82 (95%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
KLL RRMLVGIKDGRFFLG F+CIDKQGNIILQDAVEYRSTRR+SPSPMEQRCLG+ILIP
Sbjct: 27 KLLFRRMLVGIKDGRFFLGGFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIP 86
Query: 91 SSCRTSCHVDCSIDEQLSLLKV 112
SSCR +CHVDCSIDEQLSLL +
Sbjct: 87 SSCRATCHVDCSIDEQLSLLSL 108
>gi|38566550|gb|AAR24165.1| At4g18372 [Arabidopsis thaliana]
gi|40823882|gb|AAR92310.1| At4g18372 [Arabidopsis thaliana]
Length = 78
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 67/78 (85%), Positives = 74/78 (94%)
Query: 37 MLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTS 96
MLVGIKDGRFFLG+FHCIDKQGNIILQD VEYRS RR+SPSP EQRCLG+ILIPSSCRTS
Sbjct: 1 MLVGIKDGRFFLGNFHCIDKQGNIILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTS 60
Query: 97 CHVDCSIDEQLSLLKVDQ 114
CHVDCSIDEQLSL+++ +
Sbjct: 61 CHVDCSIDEQLSLIQLKE 78
>gi|326519875|dbj|BAK03862.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 126
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 80/92 (86%), Gaps = 1/92 (1%)
Query: 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS-PMEQR 82
H+S +RKLL RRMLVG+ DGR+FLG FHC+DKQGNIILQDAVEYRS RR+SPS P E+R
Sbjct: 35 QHVSTLRKLLFRRMLVGVNDGRYFLGLFHCVDKQGNIILQDAVEYRSARRSSPSAPKEER 94
Query: 83 CLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
CLG+ILIP+SCR+SCHVDC I EQ++LL + +
Sbjct: 95 CLGLILIPASCRSSCHVDCFIQEQMALLSLSK 126
>gi|357123414|ref|XP_003563405.1| PREDICTED: LSM domain-containing protein 1-like [Brachypodium
distachyon]
Length = 123
Score = 144 bits (362), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 78/91 (85%)
Query: 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRC 83
H+++++KLL RRML+G+ DGR+FLG FHCIDKQGNIILQDAVEYRS R + P EQRC
Sbjct: 33 QHVAKLQKLLFRRMLIGVNDGRYFLGLFHCIDKQGNIILQDAVEYRSARHSPSPPTEQRC 92
Query: 84 LGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
LG+ILIP++CR SCHVDC I+EQ+SLL +D+
Sbjct: 93 LGLILIPAACRLSCHVDCFIEEQMSLLSLDK 123
>gi|296081775|emb|CBI20780.3| unnamed protein product [Vitis vinifera]
Length = 78
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 72/76 (94%)
Query: 37 MLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTS 96
MLVG+ DGRFFLGSFHC+DKQGNIILQD VEYRSTRR+SPSPMEQRCLG+ILIP SCRTS
Sbjct: 1 MLVGVSDGRFFLGSFHCMDKQGNIILQDTVEYRSTRRSSPSPMEQRCLGLILIPFSCRTS 60
Query: 97 CHVDCSIDEQLSLLKV 112
CHVDCSI+EQLSLL +
Sbjct: 61 CHVDCSIEEQLSLLSL 76
>gi|226493100|ref|NP_001147152.1| sm protein [Zea mays]
gi|195607764|gb|ACG25712.1| sm protein [Zea mays]
gi|195627350|gb|ACG35505.1| sm protein [Zea mays]
gi|413943367|gb|AFW76016.1| sm protein isoform 1 [Zea mays]
gi|413943368|gb|AFW76017.1| sm protein isoform 2 [Zea mays]
Length = 120
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 82/105 (78%), Gaps = 1/105 (0%)
Query: 6 ETTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65
++ +T SS S ++++RKLL RRML+G+ DGR+F G FHCIDKQGNIILQDA
Sbjct: 14 DSGDTYRNSSTAPVGSSSPSVAKLRKLLFRRMLIGVNDGRYFHGLFHCIDKQGNIILQDA 73
Query: 66 VEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLL 110
VEYRS R SP P EQRCLG+ILIP++CR+SC VDCS++E++SLL
Sbjct: 74 VEYRSARHCSP-PTEQRCLGLILIPAACRSSCQVDCSVEEKMSLL 117
>gi|242096720|ref|XP_002438850.1| hypothetical protein SORBIDRAFT_10g027190 [Sorghum bicolor]
gi|241917073|gb|EER90217.1| hypothetical protein SORBIDRAFT_10g027190 [Sorghum bicolor]
Length = 126
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/103 (61%), Positives = 82/103 (79%), Gaps = 3/103 (2%)
Query: 14 SSAGSDTKGSNH---ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS 70
S+A D GS+ ++++RKLL RRML+G+ DGR+F G FHCIDKQGNIILQDAVEYRS
Sbjct: 24 SAAPLDAAGSSSSPAVAKLRKLLFRRMLIGVNDGRYFHGLFHCIDKQGNIILQDAVEYRS 83
Query: 71 TRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVD 113
R P EQRCLG+ILIP++CR+SC VDCS++E++SLL ++
Sbjct: 84 AARHCSPPTEQRCLGLILIPAACRSSCQVDCSVEEKMSLLGLE 126
>gi|413934441|gb|AFW68992.1| hypothetical protein ZEAMMB73_981634 [Zea mays]
Length = 122
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 60/96 (62%), Positives = 78/96 (81%), Gaps = 4/96 (4%)
Query: 15 SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT 74
+AGS + ++++RKLL RRML+G+ DGR+F G FHCIDKQGNIILQDAVEYRS R
Sbjct: 28 AAGSSSPA---VAKLRKLLFRRMLIGVNDGRYFHGLFHCIDKQGNIILQDAVEYRSARHC 84
Query: 75 SPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLL 110
P P E RCLG+ILIP++CR+SC VDCS++E++SL+
Sbjct: 85 LP-PTEHRCLGLILIPAACRSSCQVDCSVEEKMSLM 119
>gi|115469518|ref|NP_001058358.1| Os06g0677600 [Oryza sativa Japonica Group]
gi|52076623|dbj|BAD45524.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica Group]
gi|52076909|dbj|BAD45921.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica Group]
gi|113596398|dbj|BAF20272.1| Os06g0677600 [Oryza sativa Japonica Group]
gi|125556469|gb|EAZ02075.1| hypothetical protein OsI_24156 [Oryza sativa Indica Group]
gi|125598231|gb|EAZ38011.1| hypothetical protein OsJ_22356 [Oryza sativa Japonica Group]
gi|215693232|dbj|BAG88614.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 116
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/109 (55%), Positives = 83/109 (76%), Gaps = 8/109 (7%)
Query: 12 VESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS- 70
E++ G + S H+ ++RK+L RRMLVG+ DGR+FLG FHC+DKQGNI+LQDAVEYR+
Sbjct: 10 AETTGGGGS--SPHVEKLRKMLFRRMLVGVNDGRYFLGLFHCVDKQGNILLQDAVEYRTS 67
Query: 71 -----TRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
S SP EQR LG+ILIP++CR+SCHVDC+++E +SLL +D+
Sbjct: 68 ARRRSPSSPSSSPAEQRGLGLILIPAACRSSCHVDCAVEESMSLLSLDR 116
>gi|116784827|gb|ABK23485.1| unknown [Picea sitchensis]
Length = 113
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 75/110 (68%), Gaps = 4/110 (3%)
Query: 9 ETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEY 68
ET E + S S+ + R RKLL R + VG+ DGR F+G FHC+DKQGNIIL DAVEY
Sbjct: 3 ETPDEDNLDSGNSSSSLVKRARKLLYRNLRVGVTDGRVFVGKFHCLDKQGNIILYDAVEY 62
Query: 69 RSTRRTSPSP----MEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
R + S S ME R LG+ILI + RTSCHV+CS+DEQ+SLL +D+
Sbjct: 63 RQITKPSSSSASNCMEHRSLGLILISARVRTSCHVECSLDEQISLLTLDE 112
>gi|302760253|ref|XP_002963549.1| hypothetical protein SELMODRAFT_80458 [Selaginella moellendorffii]
gi|300168817|gb|EFJ35420.1| hypothetical protein SELMODRAFT_80458 [Selaginella moellendorffii]
Length = 96
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 63/99 (63%), Gaps = 5/99 (5%)
Query: 15 SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT 74
G + + + + RKLL R M +G+ DGR F+G FHC+DKQGNIIL D +E R T
Sbjct: 3 GGGVEVEERASVKQCRKLLYRSMRIGVADGRIFVGKFHCLDKQGNIILYDTLEQRQGAGT 62
Query: 75 SPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVD 113
E R LG++LIP+ CR SCHV+CS+ E LS L ++
Sbjct: 63 -----ESRSLGLVLIPTHCRVSCHVECSLGENLSALSLN 96
>gi|168007482|ref|XP_001756437.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692476|gb|EDQ78833.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 86
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 60/84 (71%), Gaps = 10/84 (11%)
Query: 39 VGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP----------SPMEQRCLGIIL 88
VG++DGR F+G FHC+DKQGNIIL D VE+R+ + +P+EQR LG++L
Sbjct: 3 VGVEDGRIFVGKFHCLDKQGNIILYDTVEFRNVPSSGEVRAEEDVGGGAPVEQRSLGLVL 62
Query: 89 IPSSCRTSCHVDCSIDEQLSLLKV 112
IP+ CRT CHV+CS++E++ LL +
Sbjct: 63 IPARCRTLCHVECSLNEKMDLLSL 86
>gi|159490030|ref|XP_001702992.1| predicted protein [Chlamydomonas reinhardtii]
gi|158270899|gb|EDO96730.1| predicted protein [Chlamydomonas reinhardtii]
Length = 106
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 4/97 (4%)
Query: 16 AGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
A SD I VR LL R+ V + GR G F C+DKQGNIIL + +E + T+
Sbjct: 2 ASSDA-APKSIQDVRALLYRKFRVTLTSGRVLEGDFSCLDKQGNIILSNTLEQLT---TA 57
Query: 76 PSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKV 112
E+R +G++L+P + + S+DE++S+LK+
Sbjct: 58 TGKKEERHMGLVLVPVQQQQKVELQASLDEEMSMLKL 94
>gi|302832758|ref|XP_002947943.1| hypothetical protein VOLCADRAFT_116657 [Volvox carteri f.
nagariensis]
gi|300266745|gb|EFJ50931.1| hypothetical protein VOLCADRAFT_116657 [Volvox carteri f.
nagariensis]
Length = 107
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 59/99 (59%), Gaps = 7/99 (7%)
Query: 14 SSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR 73
S++G+ K + VR LL RR V + GR G F C+D+QGNIIL + E +
Sbjct: 2 SASGARPKS---VQDVRNLLYRRFRVTLVSGRVLEGDFTCLDRQGNIILSNTFEQVT--- 55
Query: 74 TSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKV 112
T+P E R +G++L+P++ + + +++E++S+L++
Sbjct: 56 TAPG-REGRHMGLVLVPTNQQQKVELQATLEEEMSMLQL 93
>gi|392572048|gb|EIW65220.1| hypothetical protein TRAVEDRAFT_26096 [Trametes versicolor
FP-101664 SS1]
Length = 116
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQR 82
S ++ R++ +L + + V + DGR FLG+F DKQ N++L +A EYR P +E R
Sbjct: 19 SVNVERLKGMLKQMIRVSVTDGRVFLGTFAGTDKQLNLLLINADEYRLGPDAGPEGLEAR 78
Query: 83 CLGIILIP 90
+G I++P
Sbjct: 79 YVGQIMVP 86
>gi|332031609|gb|EGI71081.1| LSM domain-containing protein 1-A [Acromyrmex echinatior]
Length = 115
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++R L R + + + DGR G+F C D+ N+IL EY ST T E R LG++
Sbjct: 47 KLRSWLNRHLRIEMTDGRVLRGAFLCTDRDANVILGSCTEYLSTEHT-----EARVLGLV 101
Query: 88 LIPSSCRTSCHVDC 101
++P S H+D
Sbjct: 102 MVPGRHIVSIHLDV 115
>gi|307110889|gb|EFN59124.1| hypothetical protein CHLNCDRAFT_49967 [Chlorella variabilis]
Length = 111
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGI 86
+ +LL +R + +KDGR +G F C+DK+GNIIL + E+ + ++ +G
Sbjct: 24 EQAAELLHKRCKIQVKDGRVLVGDFTCLDKEGNIILTNTYEHMQLG----GQLHEKVMGQ 79
Query: 87 ILIPSSCRTSC 97
+L+P++ R SC
Sbjct: 80 VLVPAAHRVSC 90
>gi|325180181|emb|CCA14583.1| AlNc14C4G652 [Albugo laibachii Nc14]
Length = 130
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 13/86 (15%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS--------TRRTSPS 77
I R+ K R + + I DGR +GSF+C+DKQ NIIL DA E+RS +R P
Sbjct: 40 IRRLAKYQTRILRIKITDGRVIVGSFYCLDKQFNIILTDAKEWRSNSESDTEKSREWFPD 99
Query: 78 PM-----EQRCLGIILIPSSCRTSCH 98
+ R LG++LI S H
Sbjct: 100 DLLCDSDTLRSLGLVLITGKYILSIH 125
>gi|255079786|ref|XP_002503473.1| predicted protein [Micromonas sp. RCC299]
gi|226518740|gb|ACO64731.1| predicted protein [Micromonas sp. RCC299]
Length = 157
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCL- 84
I+RVR ++ R + V + DGR F+G F C DKQGNI+++DA+ ST P E
Sbjct: 36 IARVRCMMGREIRVKVVDGRVFVGRFECYDKQGNILMEDAM---STTLDDPEGTEPHTYR 92
Query: 85 GIILIPSSCRTSCHV 99
G+I+I R +
Sbjct: 93 GMIIIQKQHRVETQL 107
>gi|302673926|ref|XP_003026649.1| hypothetical protein SCHCODRAFT_44183 [Schizophyllum commune H4-8]
gi|300100332|gb|EFI91746.1| hypothetical protein SCHCODRAFT_44183 [Schizophyllum commune H4-8]
Length = 89
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-------PS 77
+I+RVR L + + + DGR FLG F DK NI+L +A EYR+ + T P
Sbjct: 7 NIARVRALTRSTLRITVTDGRVFLGQFAGTDKPLNILLVNAEEYRAQKTTGDNAQIGQPP 66
Query: 78 PMEQRCLGIILIPSSCRTSCHVD 100
+ R +G I+IP T +
Sbjct: 67 QYDGRFVGQIMIPWKIITKAEAE 89
>gi|393247449|gb|EJD54956.1| hypothetical protein AURDEDRAFT_25718, partial [Auricularia
delicata TFB-10046 SS5]
Length = 85
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 47/85 (55%), Gaps = 10/85 (11%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---------STRRTSP 76
IS+++ L + M + I DGR FLG F CIDK NI+L + E+R + R++
Sbjct: 1 ISQLQSYLTKVMRIAIADGRVFLGMFACIDKDRNIVLVNTEEFRVSGPQQQQDTFSRSAS 60
Query: 77 SPME-QRCLGIILIPSSCRTSCHVD 100
S +E R +G+++IP S V+
Sbjct: 61 SGIEGGRYVGMVMIPWKHVVSAEVE 85
>gi|395326390|gb|EJF58800.1| hypothetical protein DICSQDRAFT_109646 [Dichomitus squalens
LYAD-421 SS1]
Length = 108
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 20 TKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM 79
T + ++ R++ LL + + V + DGR FLG+F DKQ NI+L + EYR +
Sbjct: 7 TPPTENVERLQALLRKTLRVSVTDGRVFLGTFAGTDKQLNILLINTDEYRLGPDAGSDGL 66
Query: 80 EQRCLGIILIP 90
+ R +G ++IP
Sbjct: 67 DGRYVGQVMIP 77
>gi|72169980|ref|XP_786252.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Strongylocentrotus purpuratus]
Length = 204
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRC 83
S++ + + RM V ++DGR F+G+F DK NI+L D E+R R S P+ E+R
Sbjct: 7 SKMVQYINYRMRVNLQDGRTFIGTFLAFDKHMNIVLGDCEEFRKLRAKSAKAPAKEEKRV 66
Query: 84 LGIILI 89
LG++L+
Sbjct: 67 LGLVLL 72
>gi|340719457|ref|XP_003398170.1| PREDICTED: LSM domain-containing protein 1-A-like [Bombus
terrestris]
gi|350410451|ref|XP_003489044.1| PREDICTED: LSM domain-containing protein 1-A-like [Bombus
impatiens]
Length = 101
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 13 ESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
E+ +T+ S ++R L R + + + DGR +G+F C D+ N+IL E+ S
Sbjct: 18 ENGEAVNTEESPAKQKLRGWLNRNLRIKMTDGRILIGAFLCTDRDANVILGSCSEFLSED 77
Query: 73 RTSPSPMEQRCLGIILIPSSCRTSCHVDC 101
T E R LG+++IP + H+D
Sbjct: 78 HT-----EARTLGLVMIPGRHIVTIHLDA 101
>gi|393247437|gb|EJD54944.1| hypothetical protein AURDEDRAFT_31876, partial [Auricularia
delicata TFB-10046 SS5]
Length = 89
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---------STRRTSP 76
I +++ L + M V I DGR FLG F CIDK NI+L + E+R + R++
Sbjct: 5 IFQLQSYLTKVMRVAIADGRVFLGMFACIDKARNIVLVNTEEFRVGGTQQQQDTFSRSAS 64
Query: 77 SPME-QRCLGIILIPSSCRTSCHVD 100
S +E R +G+++IP S V+
Sbjct: 65 SGIEGGRYVGMVMIPWKHVVSAEVE 89
>gi|409049881|gb|EKM59358.1| hypothetical protein PHACADRAFT_249802 [Phanerochaete carnosa
HHB-10118-sp]
Length = 139
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 4/85 (4%)
Query: 6 ETTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65
E T++ ++ G DT + +++ LL R + V +DGR FLGSF DK N++L +
Sbjct: 17 EQTDSTLKIEEGEDTPA---VQQLKSLLNRTLRVTTRDGRVFLGSFAGTDKLLNVLLMNT 73
Query: 66 VEYRSTRRTSPSPMEQRCLGIILIP 90
E+R + +P R +G++LIP
Sbjct: 74 DEFRFSPPQHANP-GGRFVGLVLIP 97
>gi|145351709|ref|XP_001420210.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580443|gb|ABO98503.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 105
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 42 KDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT-----SPSPMEQRCLGIILIPSSCRTS 96
+DGR F+G+ C+DKQ NI++ DA EY S S + QR + +IL+ R S
Sbjct: 28 RDGRCFVGTLRCVDKQRNIVVSDAREYASLDAAIADDGSEATAPQRTINMILLSEIQRAS 87
Query: 97 CHV--DCSIDEQLSLLKV 112
C V D ++ E L+ L +
Sbjct: 88 CEVSSDGAVAEALADLAL 105
>gi|440795995|gb|ELR17104.1| LSM domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 204
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/95 (33%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 7 TTETLVESSAGSDTKGSNHISRVRK-LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65
E++ ++ + T + +I+RVR+ ++ R + V I DGR F+G F DKQ ++IL +
Sbjct: 65 NPESVWDAQLCNSTHDTPNIARVRQEMIGRGVKVVIADGRIFVGRFLAFDKQRSMILSEC 124
Query: 66 VEYRSTR--RTSPSPMEQRCLGIILIPSSCRTSCH 98
EYR + P E+R G+ILI S H
Sbjct: 125 REYRRVKIDDDGPEKEEKRNAGLILIGGKFIKSVH 159
>gi|380029708|ref|XP_003698509.1| PREDICTED: LSM domain-containing protein 1-A-like [Apis florea]
Length = 103
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++R L R + + + DGR +G+F C D+ N+IL E+ S T E R LG++
Sbjct: 35 KLRGWLNRNLRIKMTDGRVLIGAFLCTDRDANVILGSCSEFLSEDHT-----EARTLGLV 89
Query: 88 LIPSSCRTSCHVDC 101
+IP + H+D
Sbjct: 90 MIPGRHIVTIHLDA 103
>gi|110760136|ref|XP_001120034.1| PREDICTED: LSM domain-containing protein 1-A-like [Apis mellifera]
Length = 103
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++R L R + + + DGR +G+F C D+ N+IL E+ S T E R LG++
Sbjct: 35 KLRGWLNRNLRIKMTDGRVLIGAFLCTDRDANVILGSCSEFLSEDHT-----EARTLGLV 89
Query: 88 LIPSSCRTSCHVDC 101
+IP + H+D
Sbjct: 90 MIPGRHIVTIHLDA 103
>gi|167520394|ref|XP_001744536.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776867|gb|EDQ90485.1| predicted protein [Monosiga brevicollis MX1]
Length = 73
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILI 89
+ L RM + DGR+ +G+F DK NIIL D E+R ++ + E+R LG+IL+
Sbjct: 1 QFLNYRMRITTDDGRYLIGTFMAYDKHMNIILADCEEHRKPKKGADEKEEKRTLGLILL 59
>gi|378725896|gb|EHY52355.1| hypothetical protein HMPREF1120_00569 [Exophiala dermatitidis
NIH/UT8656]
Length = 115
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 15/74 (20%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---------------STRRTSP 76
LL + + V + DGR F G F C D NIIL +A EYR +T R
Sbjct: 13 LLGKTLHVTVSDGRLFTGRFQCTDSDSNIILSNAFEYRVPSKSTEKAAIDEVKATGRPIK 72
Query: 77 SPMEQRCLGIILIP 90
+ M R +G+I+IP
Sbjct: 73 ADMTSRFVGLIVIP 86
>gi|383847078|ref|XP_003699182.1| PREDICTED: LSM domain-containing protein 1-like [Megachile
rotundata]
Length = 101
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++R L R + + + DGR +G+F C D+ N+IL E+ S T E R LG++
Sbjct: 33 KLRGWLNRNLRIKMTDGRVLMGAFLCTDRDANVILGTCSEFLSEDHT-----EARNLGLV 87
Query: 88 LIPSSCRTSCHVDC 101
+IP + H+D
Sbjct: 88 MIPGRHIVTIHLDA 101
>gi|336463193|gb|EGO51433.1| hypothetical protein NEUTE1DRAFT_88845 [Neurospora tetrasperma FGSC
2508]
gi|350297609|gb|EGZ78586.1| hypothetical protein NEUTE2DRAFT_81307 [Neurospora tetrasperma FGSC
2509]
Length = 133
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 14/86 (16%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR----------STRRTSPSP 78
+ LL + + V + DGR F G F C+D + NIIL A EYR +T +S
Sbjct: 21 LNSLLNKNLRVSVTDGRMFWGQFKCVDAESNIILHSAYEYRFPTSSQAYESATSSSSAGK 80
Query: 79 ME----QRCLGIILIPSSCRTSCHVD 100
++ R LG+++IP T ++
Sbjct: 81 VKVDLTSRHLGLVVIPGQYITKIELE 106
>gi|449550420|gb|EMD41384.1| hypothetical protein CERSUDRAFT_128121 [Ceriporiopsis
subvermispora B]
Length = 112
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 85
+ R++ LL + + V I DGR F+G+F DKQ NI+L +A EYR E R +G
Sbjct: 17 VQRLKSLLRKSVRVSINDGRIFVGTFAGTDKQLNILLVNADEYRIGGERLYVNSEGRFVG 76
Query: 86 IILIP 90
I++P
Sbjct: 77 QIMVP 81
>gi|240848617|ref|NP_001155443.1| LSM domain containing 1-like [Acyrthosiphon pisum]
gi|239792439|dbj|BAH72562.1| ACYPI001828 [Acyrthosiphon pisum]
Length = 115
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 25 HISRVRKL---LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ 81
H RKL L ++M V + DGR +G+F C DK +IIL EY + + + E
Sbjct: 22 HTEGRRKLMSWLNQQMKVNLLDGRILVGTFVCTDKDAHIILSTCYEYFNEKDLNTG--ES 79
Query: 82 RCLGIILIPSSCRTSCHVD 100
R LG+++IP S H D
Sbjct: 80 RLLGLVMIPGRHIISIHTD 98
>gi|85116379|ref|XP_965044.1| hypothetical protein NCU07497 [Neurospora crassa OR74A]
gi|28926845|gb|EAA35808.1| predicted protein [Neurospora crassa OR74A]
Length = 178
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+ LL + + V + DGR F G F C+D + NIIL A EYR
Sbjct: 21 LNSLLNKNLRVSVTDGRMFWGQFKCVDAESNIILHSAYEYR 61
>gi|66823569|ref|XP_645139.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
gi|74857874|sp|Q55A45.1|RSMB_DICDI RecName: Full=Small nuclear ribonucleoprotein-associated protein B;
Short=snRNP-B; AltName: Full=Sm protein B; Short=Sm-B;
Short=SmB
gi|60473366|gb|EAL71312.1| hypothetical protein DDB_G0272320 [Dictyostelium discoideum AX4]
Length = 274
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ-RCLG 85
S++ + + RM V I+DGR +G F DK N+++ DA E+R R+ E+ R LG
Sbjct: 8 SKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLG 67
Query: 86 IILIPSSCRTSCHVDCSIDEQLSL 109
+ILI S V+ E+ L
Sbjct: 68 MILIRGETVVSMSVEAPPPEEAKL 91
>gi|393219862|gb|EJD05348.1| hypothetical protein FOMMEDRAFT_165802 [Fomitiporia mediterranea
MF3/22]
Length = 258
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 6/65 (9%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 85
+S +R LL + + V DGR F+G+F C+DKQ N+IL + EY + + E R +
Sbjct: 28 VSTLRALLNQTLRVTCSDGRVFVGTFVCVDKQLNLILANTDEYSANKP------EGRYVT 81
Query: 86 IILIP 90
++++P
Sbjct: 82 MVMVP 86
>gi|353236616|emb|CCA68607.1| hypothetical protein PIIN_02471 [Piriformospora indica DSM 11827]
Length = 112
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQR 82
S I+++R LL + + V I DGR FLG+F C DK+ NI++ E+ + R
Sbjct: 21 SPAIAKLRALLGKELRVTIGDGRIFLGNFACTDKELNIVMTQVYEFPVGFQDDHLVENGR 80
Query: 83 CLGIILIPSSCRTSCHV 99
+G+++ P T+ V
Sbjct: 81 FVGMLMFPWRHITAIEV 97
>gi|156088647|ref|XP_001611730.1| Sm domain containing protein [Babesia bovis]
gi|154798984|gb|EDO08162.1| Sm domain containing protein [Babesia bovis]
Length = 159
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPME---QRC 83
+R+++ L R+ V IKDGR F+G+F DK N++L D E+R T+ P + +R
Sbjct: 6 TRMQQWLQYRVRVAIKDGRKFVGTFIAFDKHMNLVLADCEEFRITKGKGPDKQKVELKRT 65
Query: 84 LGIILI 89
LG I++
Sbjct: 66 LGFIML 71
>gi|242808554|ref|XP_002485189.1| small nuclear ribonucleoprotein SmB, putative [Talaromyces
stipitatus ATCC 10500]
gi|218715814|gb|EED15236.1| small nuclear ribonucleoprotein SmB, putative [Talaromyces
stipitatus ATCC 10500]
Length = 218
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 45/90 (50%), Gaps = 12/90 (13%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR--------T 74
+N +++ L+ RM V + DGR G DK N++L D E+R +R
Sbjct: 3 ANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKATKQAPGA 62
Query: 75 SPSPM----EQRCLGIILIPSSCRTSCHVD 100
+P+P+ E+R LG+ ++ + SC VD
Sbjct: 63 APAPLVEAEEKRTLGLTIVRGTNVVSCSVD 92
>gi|326931150|ref|XP_003211697.1| PREDICTED: LSM domain-containing protein 1-like [Meleagris
gallopavo]
Length = 134
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
R+ LL R + V + DGR +G+F C D+ NIIL A E+ P E R LG+
Sbjct: 54 RLAALLNRSLRVRMSDGRTLVGAFLCTDRDANIILGSAQEFLKAADAFPGS-EPRVLGLA 112
Query: 88 LIPSSCRTSCHVD 100
++P S V+
Sbjct: 113 MVPGHHIVSIEVE 125
>gi|303272591|ref|XP_003055657.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463631|gb|EEH60909.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 160
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 33/53 (62%)
Query: 17 GSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
G+ + + ++ VR +L R++ V + DGR F G C DK GN++L++A E R
Sbjct: 2 GASSADDDPVAAVRAMLGRKLRVRVTDGRVFYGYLTCFDKLGNVMLENATECR 54
>gi|194759384|ref|XP_001961929.1| GF15217 [Drosophila ananassae]
gi|190615626|gb|EDV31150.1| GF15217 [Drosophila ananassae]
Length = 120
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L R + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 43 KLQKWLGRVLRIVITDGRVLIGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 96
Query: 88 LIPSSCRTSCHVDCSIDEQLSLL 110
++P SC +D D Q SLL
Sbjct: 97 MVPGKHIVSCCID-EPDPQSSLL 118
>gi|443895809|dbj|GAC73154.1| hypothetical protein PANT_8c00098 [Pseudozyma antarctica T-34]
Length = 178
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
+ R +V I DGR F G+F C+D NIIL D E R T S R +G+++IP
Sbjct: 79 NFVGRTSIVHIPDGRAFCGTFLCVDSGSNIILSDTDELRLTSSGGTS---SRNVGMVMIP 135
Query: 91 SSC 93
+C
Sbjct: 136 GNC 138
>gi|336265444|ref|XP_003347493.1| hypothetical protein SMAC_08060 [Sordaria macrospora k-hell]
gi|380087975|emb|CCC05193.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 210
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+ LL + + V + DGR F G F C+D + NIIL EYR
Sbjct: 21 LNSLLNKNLRVSVTDGRMFWGQFKCVDAESNIILHSTYEYR 61
>gi|328860396|gb|EGG09502.1| hypothetical protein MELLADRAFT_34386 [Melampsora larici-populina
98AG31]
Length = 100
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
+RKLL RR+ + I DGR F G+F C D++ NI+L A+EY+ P + R + +I
Sbjct: 15 LRKLLGRRIQITIVDGRVFTGNFICTDQRCNIVLDHAIEYQ------PKTNQTREVALIT 68
Query: 89 I 89
I
Sbjct: 69 I 69
>gi|390335271|ref|XP_001198253.2| PREDICTED: LSM domain-containing protein 1-like [Strongylocentrotus
purpuratus]
Length = 122
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
R+ L + M + + DGR +G+F C DK N+IL EY + SP E R LG+
Sbjct: 44 RMESWLNQPMRIQMTDGRTLVGTFICTDKDRNVILGSCEEYVNP-PDSPEKEEPRVLGLA 102
Query: 88 LIPSSCRTSCHVD 100
++P S +D
Sbjct: 103 MVPGQHIVSIEID 115
>gi|67531296|ref|XP_662080.1| hypothetical protein AN4476.2 [Aspergillus nidulans FGSC A4]
gi|40741629|gb|EAA60819.1| hypothetical protein AN4476.2 [Aspergillus nidulans FGSC A4]
Length = 395
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS---- 77
+N +++ L+ RM V + DGR G DK N++L D E+R +R + S
Sbjct: 2 AANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKAKSAPGN 61
Query: 78 -PM----EQRCLGIILIPSSCRTSCHVD 100
P+ E+R LG+ ++ + SC VD
Sbjct: 62 APLVEAEEKRTLGLTIVRGTHVVSCSVD 89
>gi|291239259|ref|XP_002739539.1| PREDICTED: small nuclear ribonucleoprotein polypeptide N-like
[Saccoglossus kowalevskii]
Length = 228
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
RM + I+DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRIAIQDGRIFIGTFLAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGLVLL 72
>gi|345491540|ref|XP_001607580.2| PREDICTED: LSM domain-containing protein 1-like [Nasonia
vitripennis]
Length = 109
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++R L R + + + DGR G+F C D+ N+IL EY S E R LG++
Sbjct: 42 KLRSWLNRTLRIKMTDGRILTGAFLCTDRDANVILGLCSEYLSENS------EARALGLV 95
Query: 88 LIPSSCRTSCHVD 100
++P + H+D
Sbjct: 96 MVPGRHIVTIHLD 108
>gi|194855165|ref|XP_001968488.1| GG24897 [Drosophila erecta]
gi|190660355|gb|EDV57547.1| GG24897 [Drosophila erecta]
Length = 121
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 7/93 (7%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS 77
+DT + +++K L R + + I DGR +G F+C D+ NI+L EY +
Sbjct: 34 NDTSLTPGRRKLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ---- 89
Query: 78 PMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLL 110
E R LG +++P S ++D D Q SLL
Sbjct: 90 --EPRLLGNVMVPGQHIVSLNID-EPDPQSSLL 119
>gi|389585815|dbj|GAB68545.1| small nuclear ribonucleoprotein associated protein B', partial
[Plasmodium cynomolgi strain B]
Length = 235
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPME-QRCLG 85
SR+ L R+ V + D R+F+G+F D+ N++L DA E+R + S E +R +G
Sbjct: 39 SRLENWLQYRVRVTVSDTRYFVGTFLSYDRHMNVVLVDAEEFRKVKSKENSSKEIKRVIG 98
Query: 86 IILI 89
+ILI
Sbjct: 99 LILI 102
>gi|156102224|ref|XP_001616805.1| small nuclear ribonucleoprotein associated protein B' [Plasmodium
vivax Sal-1]
gi|148805679|gb|EDL47078.1| small nuclear ribonucleoprotein associated protein B', putative
[Plasmodium vivax]
Length = 201
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPME-QRCLG 85
SR+ L R+ V + D R+F+G+F D+ NI+L DA E+R + S E +R +G
Sbjct: 5 SRLENWLQYRVRVTVSDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSSKEIKRVIG 64
Query: 86 IILI 89
+ILI
Sbjct: 65 LILI 68
>gi|195470911|ref|XP_002087750.1| GE18190 [Drosophila yakuba]
gi|194173851|gb|EDW87462.1| GE18190 [Drosophila yakuba]
Length = 121
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 7/83 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L R + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 44 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 97
Query: 88 LIPSSCRTSCHVDCSIDEQLSLL 110
++P S ++D D Q SLL
Sbjct: 98 MVPGQHIVSLNID-EPDPQSSLL 119
>gi|313238876|emb|CBY13872.1| unnamed protein product [Oikopleura dioica]
gi|313241111|emb|CBY33408.1| unnamed protein product [Oikopleura dioica]
Length = 155
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 9/94 (9%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM------E 80
S++ L RM V ++DGR F+G+F DK N+IL D E+ RR P E
Sbjct: 6 SKLNNYLNYRMRVTLQDGRNFIGTFKAFDKHMNLILVDCDEF---RRIKPKKGETAVREE 62
Query: 81 QRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
+R LG++L+ S VD ++ + +V
Sbjct: 63 KRTLGLVLLRGEHLVSLSVDGPPPQEHATARVPN 96
>gi|221060398|ref|XP_002260844.1| ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193810918|emb|CAQ42816.1| ribonucleoprotein, putative [Plasmodium knowlesi strain H]
Length = 201
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPME-QRCLG 85
SR+ L R+ V + D R+F+G+F D+ NI+L DA E+R + S E +R +G
Sbjct: 5 SRLENWLQYRVRVTVSDTRYFVGTFLSYDRHMNIVLVDAEEFRRVKSQENSSKEIKRVIG 64
Query: 86 IILI 89
+ILI
Sbjct: 65 LILI 68
>gi|403414731|emb|CCM01431.1| predicted protein [Fibroporia radiculosa]
Length = 107
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 85
I RV+ LL + + I+DGR F+G+F +DKQ NI+L ++ E+R R +G
Sbjct: 14 IQRVKALLRLPIRLSIQDGRIFIGTFAGVDKQLNILLINSEEFRIGADYVDGNPNGRFVG 73
Query: 86 IILIPSSCRTSCHVDCSIDEQ 106
+++P R V+ S+ +
Sbjct: 74 QVMVP--WRLVVKVEASVPPE 92
>gi|50797119|ref|XP_423923.1| PREDICTED: LSM domain-containing protein 1 [Gallus gallus]
Length = 96
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
R+ LL R + V + DGR +G+F C D+ NIIL A E+ P E R LG+
Sbjct: 16 RLAALLNRSLRVRMSDGRTLVGAFLCTDRDANIILGSAQEFLKAADAFPG-SEPRVLGLA 74
Query: 88 LIPSSCRTSCHVD 100
++P S V+
Sbjct: 75 MVPGHHIVSIEVE 87
>gi|242208304|ref|XP_002470003.1| predicted protein [Postia placenta Mad-698-R]
gi|220730903|gb|EED84753.1| predicted protein [Postia placenta Mad-698-R]
Length = 383
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 29/84 (34%), Positives = 47/84 (55%), Gaps = 1/84 (1%)
Query: 7 TTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAV 66
T+E+L E +A S + R++ LL + + V I DGR FLG+F D+Q NI+L ++
Sbjct: 6 TSESL-EDTALSRPSTPESVWRLKSLLQQLLRVTILDGRIFLGTFVGTDQQLNILLVNSE 64
Query: 67 EYRSTRRTSPSPMEQRCLGIILIP 90
EYR + R +G +++P
Sbjct: 65 EYRIGPESVDGDPNGRFVGQLMVP 88
>gi|195438038|ref|XP_002066944.1| GK19354 [Drosophila willistoni]
gi|194163029|gb|EDW77930.1| GK19354 [Drosophila willistoni]
Length = 126
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
R++K L R + + I DGR +G F+C D+ NI+L EY E R LG +
Sbjct: 47 RLQKWLGRVLRIKISDGRILVGFFNCTDRDANIVLSMCAEYLVEGEGQ----EPRLLGNV 102
Query: 88 LIPSSCRTSCHVD 100
++P S ++D
Sbjct: 103 MVPGKHIVSLNID 115
>gi|124808462|ref|XP_001348319.1| ribonucleoprotein, putative [Plasmodium falciparum 3D7]
gi|23497211|gb|AAN36758.1|AE014818_23 ribonucleoprotein, putative [Plasmodium falciparum 3D7]
Length = 201
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPME-QRCLG 85
SR+ L R+ V I D R+F+G+F D+ NI+L DA E+R + S E +R +G
Sbjct: 5 SRLETWLQYRVRVTISDTRYFVGTFLSYDRHMNIVLVDAEEFRKVKSQENSLKEIKRVVG 64
Query: 86 IILI 89
+ILI
Sbjct: 65 LILI 68
>gi|348685362|gb|EGZ25177.1| hypothetical protein PHYSODRAFT_285054 [Phytophthora sojae]
Length = 145
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
KLL + + I DGR +G FHC DK N+IL+DA E+ TR
Sbjct: 50 KLLGSLVRLRISDGRVVVGRFHCFDKHQNVILKDAREFAPTR 91
>gi|149621318|ref|XP_001518812.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ornithorhynchus anatinus]
Length = 155
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST-RRTSPSPME-QRCL 84
+R+++ L R+ V IKDGR F+G+F D+ N++L D E+R T + P+E +R L
Sbjct: 6 NRMQQWLHYRVRVSIKDGRKFVGTFIAFDRHMNLVLADCEEFRLTLNKGLKEPIEVKRTL 65
Query: 85 GIILI 89
G IL+
Sbjct: 66 GFILL 70
>gi|66771181|gb|AAY54902.1| IP06106p [Drosophila melanogaster]
Length = 121
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L R + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 44 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 97
Query: 88 LIPSSCRTSCHVDCSIDEQLSLL 110
++P S +D D Q SLL
Sbjct: 98 MVPGQHIVSLSID-EPDPQSSLL 119
>gi|389750881|gb|EIM91954.1| hypothetical protein STEHIDRAFT_45105, partial [Stereum hirsutum
FP-91666 SS1]
Length = 80
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 38/68 (55%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQR 82
S ++ ++ LL + + D R FLG+F DK NI+L + E+R + T P P + R
Sbjct: 3 SPSLAALQALLRSLLRITTTDHRIFLGTFVGTDKDLNILLVNTDEFRISSTTKPDPADGR 62
Query: 83 CLGIILIP 90
+G ++IP
Sbjct: 63 YVGQVMIP 70
>gi|331223175|ref|XP_003324260.1| hypothetical protein PGTG_05066 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309303250|gb|EFP79841.1| hypothetical protein PGTG_05066 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 114
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE-YRSTRRTSPSPMEQRCLGII 87
+R LL M V I DGR F G F C+DK N++L A+E + + T+P R +G+I
Sbjct: 24 LRGLLGHEMRVEIVDGRIFEGIFVCLDKPVNLVLDQALESFSNNTATTP-----RDVGLI 78
Query: 88 LIP 90
LIP
Sbjct: 79 LIP 81
>gi|242206398|ref|XP_002469055.1| predicted protein [Postia placenta Mad-698-R]
gi|220731920|gb|EED85760.1| predicted protein [Postia placenta Mad-698-R]
Length = 204
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Query: 7 TTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAV 66
T E+L E +A S + R++ LL + + V I DGR FLG+F D+Q NI+L ++
Sbjct: 6 TLESL-EDTALSRPSTPESVRRLKSLLQQLLRVTILDGRIFLGTFVGTDQQLNILLVNSE 64
Query: 67 EYRSTRRTSPSPMEQRCLGIILIP 90
EYR + R +G +++P
Sbjct: 65 EYRIGPESVDGDPNGRFVGQLMVP 88
>gi|451848828|gb|EMD62133.1| hypothetical protein COCSADRAFT_183255 [Cochliobolus sativus
ND90Pr]
gi|451998649|gb|EMD91113.1| hypothetical protein COCHEDRAFT_1102896 [Cochliobolus
heterostrophus C5]
Length = 210
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR---TSPSPM 79
+N +++ L+ RM V ++DGR +G DK N++L D E+R TRR +P
Sbjct: 5 ANRQGKMQNLINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRRTRRKGKAAPGAT 64
Query: 80 EQ-------RCLGIILIPSSCRTSCHVD 100
+Q R +G+ +I + S VD
Sbjct: 65 QQVTETEERRAIGLTIIRGAHVISLSVD 92
>gi|116180816|ref|XP_001220257.1| hypothetical protein CHGG_01036 [Chaetomium globosum CBS 148.51]
gi|88185333|gb|EAQ92801.1| hypothetical protein CHGG_01036 [Chaetomium globosum CBS 148.51]
Length = 189
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
+ +L+ + + V D R F G+F C D + N+IL+ A EYR P P + L
Sbjct: 17 LERLINKNLRVTTTDSRMFWGTFVCTDHESNLILKHAYEYR-----HPDPKKVAALAQAT 71
Query: 89 IPSSCRTSCHV 99
IPS S ++
Sbjct: 72 IPSPSLPSMNL 82
>gi|24581280|ref|NP_722859.1| CG31950, isoform A [Drosophila melanogaster]
gi|442625602|ref|NP_001259971.1| CG31950, isoform B [Drosophila melanogaster]
gi|22945342|gb|AAN10396.1| CG31950, isoform A [Drosophila melanogaster]
gi|201065911|gb|ACH92365.1| FI06540p [Drosophila melanogaster]
gi|440213240|gb|AGB92508.1| CG31950, isoform B [Drosophila melanogaster]
Length = 121
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L R + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 44 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 97
Query: 88 LIPSSCRTSCHVDCSIDEQLSLL 110
++P S +D D Q SLL
Sbjct: 98 MVPGQHIVSLSID-EPDPQSSLL 119
>gi|346321713|gb|EGX91312.1| LSM domain protein [Cordyceps militaris CM01]
Length = 110
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 14/83 (16%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR----------STRRTSPSP--- 78
LL + + V DGR F G F C D + NI+L EYR +T+ +
Sbjct: 13 LLNQNLAVTATDGRLFWGQFKCTDAESNIVLAQTYEYRPPSEEMRAQAATQAMGAASVTL 72
Query: 79 -MEQRCLGIILIPSSCRTSCHVD 100
M R LG++++P T V+
Sbjct: 73 DMTSRYLGLVVVPGHRITKVEVE 95
>gi|198431582|ref|XP_002129571.1| PREDICTED: similar to LSM domain containing 1 [Ciona intestinalis]
Length = 92
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
+ + L + M +G+ DGR +G F C D+ N+IL A EY + + + R LG+ +
Sbjct: 20 ISQWLGKSMKIGMSDGRTLVGQFLCTDQAKNVILGSAQEYLNYSEDNCKE-DPRMLGLAM 78
Query: 89 IPSSCRTSCHVD 100
+P S VD
Sbjct: 79 VPGKHIVSMQVD 90
>gi|443692843|gb|ELT94348.1| hypothetical protein CAPTEDRAFT_79884, partial [Capitella teleta]
Length = 78
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST--RRTSPSPMEQRCLGIILI 89
L + M + + DGR +G F C D+ NIIL E+ + TS +P E R LG+ +I
Sbjct: 4 WLNKNMKICMTDGRTLIGVFLCTDRDRNIILGSCQEFLKSPGSYTSCAPGEPRTLGLAMI 63
Query: 90 PSSCRTSCHVD 100
P S HVD
Sbjct: 64 PGRHIVSIHVD 74
>gi|380472105|emb|CCF46947.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 113
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 15/84 (17%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS---------TRRTSPSP---- 78
LL + + + + DGR FLG F C D N++L A EYR +R+T+
Sbjct: 13 LLNKNLRILVTDGRMFLGQFKCTDPDRNVVLAHAYEYRQPSAQQRAELSRQTTDGSGTVT 72
Query: 79 --MEQRCLGIILIPSSCRTSCHVD 100
M R LG++++P V+
Sbjct: 73 IDMTSRYLGLVVVPGQYIVKIEVE 96
>gi|167535750|ref|XP_001749548.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771940|gb|EDQ85599.1| predicted protein [Monosiga brevicollis MX1]
Length = 137
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQR 82
+KDGR LG+ C+D + NI+L A EYR R SP M R
Sbjct: 59 LKDGRIVLGTLECVDSRANIVLTGAAEYR--LRASPLAMHSR 98
>gi|301104822|ref|XP_002901495.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262100499|gb|EEY58551.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 143
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
+ K+L + + I DGR +G FHC DK N+IL+DA E+ TR
Sbjct: 49 IMKVLGSLVRLRISDGRVIVGRFHCFDKHQNVILKDAREFAPTR 92
>gi|195576189|ref|XP_002077959.1| GD23192 [Drosophila simulans]
gi|194189968|gb|EDX03544.1| GD23192 [Drosophila simulans]
Length = 121
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L R + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 44 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 97
Query: 88 LIPSSCRTSCHVDCSIDEQLSLL 110
++P S +D D Q SLL
Sbjct: 98 MVPGQHIVSLSID-EPDPQSSLL 119
>gi|195342127|ref|XP_002037653.1| GM18377 [Drosophila sechellia]
gi|194132503|gb|EDW54071.1| GM18377 [Drosophila sechellia]
Length = 121
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L R + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 44 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 97
Query: 88 LIPSSCRTSCHVDCSIDEQLSLL 110
++P S +D D Q SLL
Sbjct: 98 MVPGQHIVSLSID-EPDSQSSLL 119
>gi|318037236|ref|NP_001187334.1| LSM domain-containing protein 1 [Ictalurus punctatus]
gi|308322743|gb|ADO28509.1| lsm domain-containing protein 1 [Ictalurus punctatus]
Length = 103
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ LL + M + + DGR LG F C D+ N+IL A E+ T S S E R LG+
Sbjct: 23 KLENLLNKSMKIRMTDGRTLLGLFLCTDRDCNVILGSAQEFLRT-TDSFSQAEPRVLGLA 81
Query: 88 LIPSSCRTSCHVD 100
+IP S V+
Sbjct: 82 MIPGHHVVSIEVE 94
>gi|330802101|ref|XP_003289059.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
gi|325080893|gb|EGC34430.1| hypothetical protein DICPUDRAFT_88331 [Dictyostelium purpureum]
Length = 250
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ-RCLG 85
S++ + + RM V I+DGR +G F DK N+++ DA E+R ++ E+ R LG
Sbjct: 8 SKMLQYINYRMKVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIKQKGKEDREEKRTLG 67
Query: 86 IILIPSSCRTSCHVDCSIDEQLSL 109
++LI S V+ E+ L
Sbjct: 68 MLLIRGETVVSMSVEAPPPEEAKL 91
>gi|322694709|gb|EFY86531.1| LSM domain-containing protein [Metarhizium acridum CQMa 102]
Length = 102
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 9/68 (13%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR---------TSPSPMEQR 82
LL + + V DGR F G+F C D NI+L + EYR R ++ R
Sbjct: 13 LLNQNLRVHTTDGRLFWGAFKCTDPDKNIVLANTYEYRQPSRPRLVEGPDGSTTEDRTSR 72
Query: 83 CLGIILIP 90
LG++++P
Sbjct: 73 YLGLVVVP 80
>gi|124487908|gb|ABN12037.1| small nuclear ribonucleoprotein B'-like protein [Maconellicoccus
hirsutus]
Length = 135
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--EQRCLGIILI 89
++DGR F+G+F DK N+IL + EYR R +P E+R LG +L+
Sbjct: 21 LQDGRTFIGTFKAFDKHMNLILSECDEYRKYRTKGDAPPREEKRTLGFVLL 71
>gi|291234910|ref|XP_002737389.1| PREDICTED: Small Nuclear Ribonucleoprotein family member
(snr-2)-like [Saccoglossus kowalevskii]
Length = 97
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ L RR+ + + DGR +G+F C D++ N+IL EY + T+ E R LG+
Sbjct: 17 KLESWLNRRLRICMTDGRTLIGTFLCTDQERNVILGSCEEYVNPPDTT-EKEEPRVLGLA 75
Query: 88 LIPSSCRTSCHVDCSIDEQLSL 109
++P + VD Q L
Sbjct: 76 MVPGQHIVTIEVDMYTPPQAIL 97
>gi|109505083|ref|XP_001067879.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Rattus norvegicus]
gi|293342849|ref|XP_002725336.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Rattus norvegicus]
Length = 240
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGRFF+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRFFIGTFKAFDKHRNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|260819010|ref|XP_002604675.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
gi|229290003|gb|EEN60686.1| hypothetical protein BRAFLDRAFT_94837 [Branchiostoma floridae]
Length = 219
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP---MEQRC 83
S+++ L RM V ++D R F+G+F DK N+IL D E+R R S E+R
Sbjct: 7 SKMQAHLNYRMRVTLQDSRVFIGTFKAFDKHMNLILVDCDEFRKIRPKSQKQEEREEKRV 66
Query: 84 LGIILI 89
LG++L+
Sbjct: 67 LGLVLL 72
>gi|294954218|ref|XP_002788058.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239903273|gb|EER19854.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 95
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM-----EQRCLGI 86
LL + + + + DGR G +CID + NI+L++AVE R +P + R +G+
Sbjct: 16 LLHKPLRITLTDGREITGRLYCIDDKKNIVLRNAVERRKGNEVTPLTIGLKSSSTRSIGM 75
Query: 87 ILIP 90
++IP
Sbjct: 76 VMIP 79
>gi|206694|gb|AAA42059.1| snRNP-associated polypeptide N [Rattus norvegicus]
Length = 240
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGRFF+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRFFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|328699352|ref|XP_001945843.2| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Acyrthosiphon pisum]
Length = 235
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 7/61 (11%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP-------MEQRCLGIIL 88
R+ V ++D R F+G+F DK N+IL D E+R +R + P +E+R LG IL
Sbjct: 49 RVRVTLQDFRMFIGTFKAFDKHMNLILADCEEFRRLKRKAKGPTIPAEPRVEKRVLGFIL 108
Query: 89 I 89
+
Sbjct: 109 L 109
>gi|340517285|gb|EGR47530.1| predicted protein [Trichoderma reesei QM6a]
Length = 101
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST---RRTSPSP---------- 78
LL + M V DGR F GSF C D NI+L + EYR R++ +
Sbjct: 13 LLNQNMRVYTTDGRMFRGSFKCTDPDRNIVLANTHEYRQPSEGERSAAAANASGDSVTLD 72
Query: 79 MEQRCLGIILIP 90
M R LG++++P
Sbjct: 73 MTSRYLGLVVVP 84
>gi|328773803|gb|EGF83840.1| hypothetical protein BATDEDRAFT_8283, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 213
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRC 83
SR+ +LL R+ + I+DGR F+G DK N++L + E+R R + S E+R
Sbjct: 6 SRILQLLNHRLKITIQDGRTFIGQMLAFDKHMNLVLSECEEFRKIRPKTKSQQEREEKRS 65
Query: 84 LGIILI 89
LG++++
Sbjct: 66 LGLVIL 71
>gi|119175495|ref|XP_001239965.1| hypothetical protein CIMG_09586 [Coccidioides immitis RS]
gi|392870163|gb|EAS27328.2| hypothetical protein CIMG_09586 [Coccidioides immitis RS]
Length = 223
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST-RRTSPSPM-- 79
+N +++ L+ RM V + DGR G DK N++L D E+R RR + P
Sbjct: 3 ANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKVKRRQAKGPQGG 62
Query: 80 --------EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC VD
Sbjct: 63 NGPLVETEEKRTLGLTIVRGTHVVSCSVD 91
>gi|170100322|ref|XP_001881379.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164644058|gb|EDR08309.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 98
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQR 82
S+ ++R+ LL + + V I DGR FLG+F DK N+IL +A EYR + + R
Sbjct: 6 SHRLARLEGLLRQPLRVTINDGRIFLGTFVGTDKPLNLILINAEEYRVGVGQNG---DGR 62
Query: 83 CLGIILIP 90
+G IL+P
Sbjct: 63 YVGQILVP 70
>gi|358366072|dbj|GAA82693.1| hypothetical protein AKAW_00808 [Aspergillus kawachii IFO 4308]
Length = 220
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP------ 76
+N +++ L+ RM V + DGR G DK N++L D E+R +R S
Sbjct: 3 ANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGST 62
Query: 77 -SPM----EQRCLGIILIPSSCRTSCHVD 100
+P+ E+R LG+ ++ + SC VD
Sbjct: 63 NAPLVEAEEKRTLGLTIVRGTHVVSCSVD 91
>gi|449019941|dbj|BAM83343.1| similar to Sm-like protein LSm1 [Cyanidioschyzon merolae strain
10D]
Length = 124
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
L +R+LV ++DGRFFLG D+ GN+ L+DA E
Sbjct: 9 LDKRVLVYLRDGRFFLGYLRSFDQYGNLTLEDATE 43
>gi|303314917|ref|XP_003067467.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240107135|gb|EER25322.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320037834|gb|EFW19771.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 223
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST-RRTSPSPM-- 79
+N +++ L+ RM V + DGR G DK N++L D E+R RR + P
Sbjct: 3 TNKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKVKRRQAKGPQGG 62
Query: 80 --------EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC VD
Sbjct: 63 NGPLVETEEKRTLGLTIVRGTHVVSCSVD 91
>gi|145256987|ref|XP_001401581.1| small nuclear ribonucleoprotein SmB [Aspergillus niger CBS 513.88]
gi|134058491|emb|CAL00700.1| unnamed protein product [Aspergillus niger]
Length = 220
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-P----- 76
+N +++ L+ RM V + DGR G DK N++L D E+R +R S P
Sbjct: 3 ANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGST 62
Query: 77 -SPM----EQRCLGIILIPSSCRTSCHVD 100
+P+ E+R LG+ ++ + SC VD
Sbjct: 63 NAPLVEAEEKRTLGLTIVRGTHVVSCSVD 91
>gi|388855045|emb|CCF51372.1| uncharacterized protein [Ustilago hordei]
Length = 123
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
L+ R LV I DGR F G+ CID NIIL + E R+T + S R +G+++IP
Sbjct: 19 NLVGRTSLVHIPDGRAFCGTLLCIDSGCNIILANTDETRTTAQGRTS---TRNVGMVMIP 75
Query: 91 SS 92
+
Sbjct: 76 GN 77
>gi|367019744|ref|XP_003659157.1| hypothetical protein MYCTH_2295851 [Myceliophthora thermophila
ATCC 42464]
gi|347006424|gb|AEO53912.1| hypothetical protein MYCTH_2295851 [Myceliophthora thermophila
ATCC 42464]
Length = 171
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTS 75
S +R LL + V D R F G+F C D + NIILQ EYR S R+ S
Sbjct: 23 SFLRSLLNKNFRVTTTDSRMFWGTFKCTDPESNIILQHTYEYRYPSARQVS 73
>gi|330801183|ref|XP_003288609.1| hypothetical protein DICPUDRAFT_23687 [Dictyostelium purpureum]
gi|325081336|gb|EGC34855.1| hypothetical protein DICPUDRAFT_23687 [Dictyostelium purpureum]
Length = 76
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQR 82
S I+ V+ + +++ + K+ R +G F+C DKQ NI+L +A E S S ++
Sbjct: 1 SESINSVKSWMGKKIKITTKNNRSIIGKFYCFDKQQNILLNNAYE-EVKSPDSDSSTYRK 59
Query: 83 CLGIILIPSSCRTSCHV 99
LG+ +P SC +
Sbjct: 60 ELGVAFVPIIHIESCKI 76
>gi|159125035|gb|EDP50152.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus
fumigatus A1163]
Length = 357
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-----PS--PM----E 80
L+ RM + + DGR G DK N++L D E+R +R S PS P+ E
Sbjct: 130 LINYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAEE 189
Query: 81 QRCLGIILIPSSCRTSCHVD 100
+R LG+ ++ + SC VD
Sbjct: 190 KRTLGLTIVRGTHVVSCSVD 209
>gi|70994546|ref|XP_752051.1| small nuclear ribonucleoprotein SmB [Aspergillus fumigatus Af293]
gi|66849685|gb|EAL90013.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus
fumigatus Af293]
Length = 357
Score = 43.9 bits (102), Expect = 0.013, Method: Composition-based stats.
Identities = 27/80 (33%), Positives = 40/80 (50%), Gaps = 11/80 (13%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-----PS--PM----E 80
L+ RM + + DGR G DK N++L D E+R +R S PS P+ E
Sbjct: 130 LINYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAEE 189
Query: 81 QRCLGIILIPSSCRTSCHVD 100
+R LG+ ++ + SC VD
Sbjct: 190 KRTLGLTIVRGTHVVSCSVD 209
>gi|357624151|gb|EHJ75030.1| putative small nuclear ribonucleoprotein, core [Danaus plexippus]
Length = 105
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGI 86
+++RK L + + DGR +G F C D+ N+IL EY + + E R LG+
Sbjct: 22 AKLRKWLNMNFRIEMTDGRVLIGVFLCTDRDANVILGACSEY--LKSSDGETEEPRVLGL 79
Query: 87 ILIPSSCRTSCHVDCSIDEQ 106
+++P S +D + Q
Sbjct: 80 VMVPGRHIVSIQLDNTNPPQ 99
>gi|221132073|ref|XP_002159433.1| PREDICTED: LSM domain-containing protein 1-A-like [Hydra
magnipapillata]
Length = 117
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ-RCLGIILIP 90
+L + M + I DGR +G F C DK NIIL E+ + E+ R LG+ ++P
Sbjct: 23 ILNKTMKLEITDGRTLIGQFLCTDKDENIILGSCQEFSGEQIEGEQKTEEPRILGLAMVP 82
Query: 91 SSCRTSCHVDCS 102
+ H+D +
Sbjct: 83 GRHVKTMHIDMT 94
>gi|402219027|gb|EJT99102.1| hypothetical protein DACRYDRAFT_39269, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 59
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 39 VGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
+ I DGR F+G+F CIDK+ N++L +A EYR R + +I++P
Sbjct: 2 LSITDGRVFIGTFACIDKEKNLVLINADEYRF----EEGRWMDRYVAMIMVP 49
>gi|70937084|ref|XP_739397.1| ribonucleoprotein [Plasmodium chabaudi chabaudi]
gi|56516366|emb|CAH81154.1| ribonucleoprotein, putative [Plasmodium chabaudi chabaudi]
Length = 141
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR-RTSPSPME 80
G N+ R+ L R+ V I D R+++G+F D+ NI+L DA E+R + + + S
Sbjct: 2 GKNY--RLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKCKENNSKEI 59
Query: 81 QRCLGIILI 89
+R +G+ILI
Sbjct: 60 KRVVGLILI 68
>gi|317146114|ref|XP_001821302.2| small nuclear ribonucleoprotein SmB [Aspergillus oryzae RIB40]
gi|391869223|gb|EIT78425.1| U1 snRNP component [Aspergillus oryzae 3.042]
Length = 219
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-P----- 76
+N +++ L+ RM V + DGR G DK N++L D E+R +R S P
Sbjct: 3 ANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPA 62
Query: 77 -SPM----EQRCLGIILIPSSCRTSCHVD 100
+P+ E+R LG+ ++ + SC VD
Sbjct: 63 NAPLVESEEKRTLGLTIVRGTHVVSCSVD 91
>gi|307192774|gb|EFN75864.1| LSM domain-containing protein 1 [Harpegnathos saltator]
Length = 56
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVD 100
+ DGR G+F C D+ N+IL E+ ST T E R LG++++P S ++D
Sbjct: 1 MTDGRVLRGAFLCTDRDANVILGSCTEFLSTEHT-----EARVLGLVMVPGRHIVSIYLD 55
>gi|328875018|gb|EGG23383.1| hypothetical protein DFA_05515 [Dictyostelium fasciculatum]
Length = 897
Score = 43.5 bits (101), Expect = 0.016, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ-RCLG 85
S++ + + RM + I DGR +G F DK NI++ DA E+R ++ E+ R LG
Sbjct: 686 SKMLQYINYRMKITINDGRIIVGRFLAFDKHMNIVVCDAEEFRRIKQKGKEDREEKRTLG 745
Query: 86 IILI 89
+++I
Sbjct: 746 MLVI 749
>gi|326472667|gb|EGD96676.1| small nuclear ribonucleoprotein-associated protein B [Trichophyton
tonsurans CBS 112818]
Length = 187
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR--------- 73
SN +++ L+ RM V + DGR G DK N++L D E+R ++
Sbjct: 3 SNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
Query: 74 ---TSPSPM----EQRCLGIILIPSSCRTSCHVD 100
+S +P+ E+R LG+ ++ + SC VD
Sbjct: 63 PGSSSTTPLVEAEEKRTLGLTIVRGTHVVSCSVD 96
>gi|348523756|ref|XP_003449389.1| PREDICTED: LSM domain-containing protein 1-like [Oreochromis
niloticus]
Length = 112
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 44/80 (55%), Gaps = 4/80 (5%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEY-RSTRRTSPSPMEQRCLGI 86
++ LL + M + + DGR +G F C D+ N+IL A E+ +ST S S E R LG+
Sbjct: 27 KLEGLLNKNMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKSTDTFSQS--EPRVLGL 84
Query: 87 ILIPSSCRTSCHVDC-SIDE 105
+IP S V+ S+D+
Sbjct: 85 AMIPGHHVVSIEVEADSLDD 104
>gi|319411809|emb|CBQ73852.1| conserved hypothetical protein [Sporisorium reilianum SRZ2]
Length = 116
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR--RTSPSPMEQRCLGIIL 88
+ R +V I DGR F G+F C+D NIIL + E R T RTS R +G+++
Sbjct: 21 NFVGRTSIVHIPDGRAFCGTFVCVDSGKNIILSNTDETRITPEGRTS-----SRNVGMVM 75
Query: 89 IP 90
IP
Sbjct: 76 IP 77
>gi|121706898|ref|XP_001271668.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus clavatus
NRRL 1]
gi|119399816|gb|EAW10242.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus clavatus
NRRL 1]
Length = 219
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-----PS 77
+N +++ L+ RM + + DGR G DK N++L D E+R +R S PS
Sbjct: 3 ANKQGKMQNLINYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPS 62
Query: 78 --PM----EQRCLGIILIPSSCRTSCHVD 100
P+ E+R LG+ ++ + SC VD
Sbjct: 63 NAPLVEAEEKRTLGLTIVRGTHVVSCSVD 91
>gi|432920168|ref|XP_004079871.1| PREDICTED: LSM domain-containing protein 1-like [Oryzias latipes]
Length = 112
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 9/99 (9%)
Query: 10 TLVESSAGSDTKGSNHIS-------RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIIL 62
T++E + G T+G + ++ LL + M + + DGR +G F C D+ N+IL
Sbjct: 3 TIIEEN-GPSTRGQTEVPPSSQARQKLEGLLNKNMRIRMTDGRTLVGLFLCTDRDCNVIL 61
Query: 63 QDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDC 101
A E+ + T S E R LG+ +IP S V+
Sbjct: 62 GSAQEFLKSPDTF-SQGEPRVLGLAMIPGHHVVSIEVEA 99
>gi|68064661|ref|XP_674314.1| ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56492799|emb|CAH97912.1| ribonucleoprotein, putative [Plasmodium berghei]
Length = 194
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 3/69 (4%)
Query: 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPME- 80
G N+ R+ L R+ V I D R+++G+F D+ NI+L DA E+R + + E
Sbjct: 2 GKNY--RLESWLQYRVRVTISDTRYYVGTFLSYDRHMNIVLVDAEEFRRVKNKENNFKEI 59
Query: 81 QRCLGIILI 89
+R +G+ILI
Sbjct: 60 KRVVGLILI 68
>gi|170065347|ref|XP_001867901.1| LSM domain containing 1 [Culex quinquefasciatus]
gi|167882418|gb|EDS45801.1| LSM domain containing 1 [Culex quinquefasciatus]
Length = 111
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++R L V + DGR +G F C D N+IL EY + E+R LG++
Sbjct: 37 KLRSWLNNTFRVKMSDGRILIGMFVCTDADANVILGLTSEY------TEQGGEERILGLV 90
Query: 88 LIPSSCRTSCHVD 100
+IP S V+
Sbjct: 91 MIPGRYIVSIEVE 103
>gi|148231734|ref|NP_001085519.1| LSM domain-containing protein 1-A [Xenopus laevis]
gi|82184579|sp|Q6GQ67.1|LMD1A_XENLA RecName: Full=LSM domain-containing protein 1-A
gi|49115058|gb|AAH72881.1| MGC80306 protein [Xenopus laevis]
Length = 113
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 14 SSAGSDTK-GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
S+ SD + G ++ LL R M + + DGR +G F C D+ N+IL A E+
Sbjct: 17 SAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPS 76
Query: 73 RTSPSPMEQRCLGIILIPSSCRTSCHVD 100
+ P E R LG+ ++P S V+
Sbjct: 77 DSFPV-REPRVLGLAMVPGHHIVSIQVE 103
>gi|399217788|emb|CCF74675.1| unnamed protein product [Babesia microti strain RI]
Length = 138
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 5/67 (7%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS---PME-QR 82
+R+++ L R+ V IKD R F+G F D+ N++L D EYR ++ PS P+E +R
Sbjct: 5 TRMQQWLNYRVRVIIKDNRRFIGVFIAFDRHMNLVLADCEEYRMIKK-QPSDKEPVEIKR 63
Query: 83 CLGIILI 89
LG +L+
Sbjct: 64 TLGFVLL 70
>gi|406864116|gb|EKD17162.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 191
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 14/69 (20%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP----------MEQ 81
L R + V D R FLG F C D NIIL EY R P P M
Sbjct: 99 LFNRTLRVTTTDTRMFLGHFKCTDSDRNIILAQTHEY----RLPPPPKDIQPGQVMDMTS 154
Query: 82 RCLGIILIP 90
R LG++++P
Sbjct: 155 RYLGLVVVP 163
>gi|212537761|ref|XP_002149036.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
gi|210068778|gb|EEA22869.1| conserved hypothetical protein [Talaromyces marneffei ATCC 18224]
Length = 116
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S HI+ ++ LL R + + D R F+G F C D NIIL + EYR
Sbjct: 3 NSVHINYLQSLLGRNLRIHTTDTRMFVGIFKCTDMDQNIILANTFEYR 50
>gi|91081025|ref|XP_975319.1| PREDICTED: similar to GA16583-PA [Tribolium castaneum]
gi|270005993|gb|EFA02441.1| hypothetical protein TcasGA2_TC008128 [Tribolium castaneum]
Length = 134
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ-RCLGI 86
++R L + + + + DGR +G F C D+ N+IL EY +E+ R LG+
Sbjct: 38 KLRSWLNKSLRIQMFDGRVLVGVFLCTDRDANVILGSCTEYLPAEDNGDGTIEEPRMLGL 97
Query: 87 ILIPSSCRTSCHVDCS 102
+++P S ++ +
Sbjct: 98 VMVPGKHIQSVAINLN 113
>gi|444722917|gb|ELW63589.1| LSM domain-containing protein 1 [Tupaia chinensis]
Length = 125
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S SP
Sbjct: 35 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSP 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|310790036|gb|EFQ25569.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 113
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 18/95 (18%)
Query: 21 KGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---STRRTSPS 77
+G N ++ LL + + + DGR FLG F C D N++L EYR + RR +
Sbjct: 5 EGRNFLT---SLLNKNLRIFATDGRMFLGQFKCTDPDRNVVLAHTYEYRQPSAQRRAEAA 61
Query: 78 P------------MEQRCLGIILIPSSCRTSCHVD 100
M R LG++++P V+
Sbjct: 62 QKAAERTGTVSMDMTSRYLGLVVVPGQYIVKIEVE 96
>gi|410907029|ref|XP_003966994.1| PREDICTED: LSM domain-containing protein 1-like [Takifugu rubripes]
Length = 112
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ LL + M + + DGR +G F C D+ N+IL A E+ + T S E R LG+
Sbjct: 27 KLEGLLNKNMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKSTDTF-SQGEPRVLGLA 85
Query: 88 LIPSSCRTSCHVDC 101
+IP S V+
Sbjct: 86 MIPGHHVVSIEVEA 99
>gi|119178424|ref|XP_001240885.1| hypothetical protein CIMG_08048 [Coccidioides immitis RS]
gi|303310373|ref|XP_003065199.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240104859|gb|EER23054.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|320033893|gb|EFW15839.1| hypothetical protein CPSG_07466 [Coccidioides posadasii str.
Silveira]
gi|392867156|gb|EAS29642.2| LSM domain-containing protein [Coccidioides immitis RS]
Length = 101
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---------------- 69
+S + LL R + + D R F+G F C D NIIL + EYR
Sbjct: 7 VSYLESLLNRTVRLHTSDTRLFVGLFKCTDNDRNIILSNTYEYRFPTPVALNEAIAQQGS 66
Query: 70 STRRTSPSPMEQRCLGIILIPSSCRTSCHVD 100
+ + M R +G++++P T VD
Sbjct: 67 ENQEVVKANMTSRFIGLVVVPGQHITKIEVD 97
>gi|340375810|ref|XP_003386427.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Amphimedon queenslandica]
Length = 223
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRC 83
S++ + + R+ V + DGR F+G+F D+ N++L D E+R R + P E+R
Sbjct: 6 SKLLQHMHHRIRVTLLDGRMFVGTFMAFDQHLNLVLADCEEFRKIRPKNQKLPEREEKRT 65
Query: 84 LGIILI 89
LG++L+
Sbjct: 66 LGLVLL 71
>gi|71018737|ref|XP_759599.1| hypothetical protein UM03452.1 [Ustilago maydis 521]
gi|46099357|gb|EAK84590.1| hypothetical protein UM03452.1 [Ustilago maydis 521]
Length = 382
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
++ + R +V I DGR F G F C+D NIIL D E TR T R +G+++
Sbjct: 17 IKNFVGRTSIVHIPDGRAFRGVFICVDSGKNIILADTDE---TRLTPEGRTTIRNVGMVM 73
Query: 89 IP 90
IP
Sbjct: 74 IP 75
>gi|326428499|gb|EGD74069.1| hypothetical protein PTSG_12357 [Salpingoeca sp. ATCC 50818]
Length = 212
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS--TRRTSPSPMEQRCL 84
+++ K + RM V +DGR +G+F DK N++L D E+R+ ++ + ++R L
Sbjct: 7 NKILKYMNYRMRVTTEDGRMLVGTFMAYDKHMNMVLSDCEEFRTVKAKKGTDEQTQKRAL 66
Query: 85 GIILIPSSCRTSCHVDCSIDEQ 106
G IL+ S V+ ++
Sbjct: 67 GFILLRGENVVSMAVEGPPPQE 88
>gi|326427722|gb|EGD73292.1| hypothetical protein PTSG_05008 [Salpingoeca sp. ATCC 50818]
Length = 123
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 7/72 (9%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ----- 81
S ++ LL + + VG+ DGR G F C+D NI+L A E++ T +
Sbjct: 8 SMLKGLLGKLVRVGVSDGRIVQGVFSCVDNGCNIVLTHANEWKGPPITGADAWPKDDELE 67
Query: 82 --RCLGIILIPS 91
R +G+++IP
Sbjct: 68 FRRPIGLVMIPG 79
>gi|397641777|gb|EJK74845.1| hypothetical protein THAOC_03454 [Thalassiosira oceanica]
Length = 1567
Score = 42.7 bits (99), Expect = 0.031, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 41/67 (61%), Gaps = 4/67 (5%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRC--- 83
S++ + + R+ + + DGR +G+F DK N++L DA E+R+ + + + +E+R
Sbjct: 1263 SKLLRYVEHRLRISLADGRTIVGTFLAFDKHLNLVLVDAEEFRTLKSSRAAILEERVEKR 1322
Query: 84 -LGIILI 89
LG+I++
Sbjct: 1323 SLGLIIL 1329
>gi|147901727|ref|NP_001089822.1| small nuclear ribonucleoprotein polypeptides B and B1 [Xenopus
laevis]
gi|83318209|gb|AAI08498.1| MGC130840 protein [Xenopus laevis]
Length = 234
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCTLQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|403275639|ref|XP_003929545.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Saimiri boliviensis boliviensis]
Length = 240
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKVD 113
V+ S + + +V
Sbjct: 81 TVEGSPPKDTGIARVP 96
>gi|322779204|gb|EFZ09540.1| hypothetical protein SINV_80286 [Solenopsis invicta]
Length = 344
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 15 SAGSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR- 72
+ G + K HI+ RVR +L +D R F+G+F DK N+IL D E+R +
Sbjct: 1 TIGKNNKMLQHINYRVRIIL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP 52
Query: 73 --RTSPSPMEQRCLGIILI 89
P E+R LG +L+
Sbjct: 53 KNTKQPEREEKRVLGFVLL 71
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 15 SAGSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR- 72
+ G + K HI+ RVR +L +D R F+G+F DK N+IL D E+R +
Sbjct: 130 TIGKNNKMLQHINYRVRIIL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKP 181
Query: 73 --RTSPSPMEQRCLGIILI 89
P E+R LG +L+
Sbjct: 182 KNTKQPEREEKRVLGFVLL 200
>gi|431894230|gb|ELK04030.1| Small nuclear ribonucleoprotein-associated proteins B and B'
[Pteropus alecto]
Length = 356
Score = 42.4 bits (98), Expect = 0.033, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 132 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 188
>gi|255069768|ref|NP_001153763.1| LSM domain-containing protein 1 [Danio rerio]
gi|156630951|sp|A2BIG9.1|LSMD1_DANRE RecName: Full=LSM domain-containing protein 1
Length = 109
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEY-RSTRRTSPSPMEQRCLGI 86
++ LL + M + + DGR +G F C D+ N+IL A E+ +ST S S E R LG+
Sbjct: 27 KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKST--DSLSQGEPRVLGL 84
Query: 87 ILIPSSCRTSCHVD 100
+IP S V+
Sbjct: 85 AMIPGHHVVSIEVE 98
>gi|47211209|emb|CAF90166.1| unnamed protein product [Tetraodon nigroviridis]
Length = 268
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 23 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLL 79
>gi|451958100|ref|NP_001263428.1| LSM domain-containing protein 1 [Xenopus (Silurana) tropicalis]
gi|156630952|sp|A4IGZ4.2|LSMD1_XENTR RecName: Full=LSM domain-containing protein 1
Length = 113
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ LL R M + + DGR +G F C D+ N+IL A E+ + P E R LG+
Sbjct: 32 KLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFPV-REPRVLGLA 90
Query: 88 LIPSSCRTSCHVD 100
++P S V+
Sbjct: 91 MVPGHHIVSIQVE 103
>gi|119500980|ref|XP_001267247.1| small nuclear ribonucleoprotein SmB, putative [Neosartorya fischeri
NRRL 181]
gi|119415412|gb|EAW25350.1| small nuclear ribonucleoprotein SmB, putative [Neosartorya fischeri
NRRL 181]
Length = 215
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 11/89 (12%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-----PS--PM---- 79
K++ RM + + DGR G DK N++L D E+R +R S PS P+
Sbjct: 8 KMINYRMRITLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPSNAPLVEAE 67
Query: 80 EQRCLGIILIPSSCRTSCHVDCSIDEQLS 108
E+R LG+ ++ + SC VD + S
Sbjct: 68 EKRTLGLTIVRGTHVVSCSVDGPPPAEPS 96
>gi|326482088|gb|EGE06098.1| hypothetical protein TEQG_05211 [Trichophyton equinum CBS 127.97]
Length = 240
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 16/94 (17%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR--------- 73
SN +++ L+ RM V + DGR G DK N++L D E+R ++
Sbjct: 3 SNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
Query: 74 ---TSPSPM----EQRCLGIILIPSSCRTSCHVD 100
+S +P+ E+R LG+ ++ + SC VD
Sbjct: 63 PGSSSTTPLVEAEEKRTLGLTIVRGTHVVSCSVD 96
>gi|225715680|gb|ACO13686.1| LSM domain-containing protein 1 [Esox lucius]
Length = 115
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ LL + M + + DGR +G F C D+ N+IL A E+ + S S E R LG+
Sbjct: 30 KLESLLNKNMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKS-SDSFSQGEPRVLGLA 88
Query: 88 LIPSSCRTSCHV--DCSIDEQ 106
+IP S V D +D Q
Sbjct: 89 MIPGHHVVSIEVESDSLVDTQ 109
>gi|221221384|gb|ACM09353.1| LSM domain-containing protein 1 [Salmo salar]
Length = 113
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 10 TLVESSAGSDTKGSNHIS--------RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNII 61
T++E + G T G +S ++ LL + M + + DGR +G F C D+ N+I
Sbjct: 3 TMIEEN-GPSTHGQGELSSYSSRGRQKLESLLNKNMRIRMTDGRTLVGLFLCTDRDCNVI 61
Query: 62 LQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVD 100
L A E+ + S S E R LG+ +IP S V+
Sbjct: 62 LGSAQEFLKS-SDSFSQGEPRVLGLAMIPGHHVVSIEVE 99
>gi|118398961|ref|XP_001031807.1| Sm protein [Tetrahymena thermophila]
gi|89286141|gb|EAR84144.1| Sm protein [Tetrahymena thermophila SB210]
Length = 159
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR---RTSPSPMEQRC 83
S+ + + R+ V I+DGR +G+F DK N++L + E+R + + P +R
Sbjct: 5 SKFMQWIDYRVRVTIQDGRMLVGTFLAFDKHLNLVLSETEEFRPIKPKTKGEPERQTKRI 64
Query: 84 LGIILIPSSCRTSCHVDCSIDEQ 106
LG+++I S + + +Q
Sbjct: 65 LGLVIIRGENIVSINAEAPPSQQ 87
>gi|334311663|ref|XP_001374371.2| PREDICTED: hypothetical protein LOC100022567 [Monodelphis
domestica]
Length = 465
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 241 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 300
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 301 NLVSMTVEGPPPKDTGIARV 320
>gi|366994896|ref|XP_003677212.1| hypothetical protein NCAS_0F03750 [Naumovozyma castellii CBS
4309]
gi|342303080|emb|CCC70859.1| hypothetical protein NCAS_0F03750 [Naumovozyma castellii CBS
4309]
Length = 167
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE----------YRSTRRTSP 76
SR+ LL ++ V +DGR ++G DK N+IL D +E RST+
Sbjct: 9 SRLNDLLHYKLRVITQDGRVYVGELMAFDKHMNLILSDCIEERVPRTQVLKLRSTKTVEA 68
Query: 77 SPMEQRCLGIILI 89
+E+R LG++++
Sbjct: 69 VKVEKRVLGLVIL 81
>gi|255936245|ref|XP_002559149.1| Pc13g07180 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583769|emb|CAP91787.1| Pc13g07180 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 212
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-P------SPM- 79
+++ L+ RM V + DGR GS DK N++L D E+R +R S P +P+
Sbjct: 5 KMQNLINYRMRVTLNDGRQMTGSMLAFDKHMNLVLADTEEFRRIKRKSKPAAGPTNAPLV 64
Query: 80 ---EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC V+
Sbjct: 65 EAEEKRSLGLTIVRGTQVVSCSVE 88
>gi|156045902|ref|XP_001589506.1| hypothetical protein SS1G_09227 [Sclerotinia sclerotiorum 1980]
gi|154693623|gb|EDN93361.1| hypothetical protein SS1G_09227 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 166
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 22/38 (57%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
LL + +L+ D R F GSF C D NIIL + EYR
Sbjct: 32 LLSKTLLIHTTDNRMFRGSFKCTDSDLNIILSETYEYR 69
>gi|324510990|gb|ADY44587.1| Small nuclear ribonucleoprotein-associated protein B [Ascaris suum]
Length = 165
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR----RTSPSP 78
IS+ K++ RM V ++D R F+G F DK NI+L + E+R+ + + S
Sbjct: 3 ISKNNKMMAHLNYRMRVALQDSRTFVGYFRAFDKHMNILLSECEEFRAIKPKPGKKSAPE 62
Query: 79 MEQRCLGIILIPSSCRTSCHVD 100
E R LG++L+ S VD
Sbjct: 63 EEMRTLGLVLLRGEHIVSMTVD 84
>gi|134025385|gb|AAI35308.1| lsmd1 protein [Xenopus (Silurana) tropicalis]
Length = 128
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ LL R M + + DGR +G F C D+ N+IL A E+ + P E R LG+
Sbjct: 47 KLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFPV-REPRVLGLA 105
Query: 88 LIPSSCRTSCHVD 100
++P S V+
Sbjct: 106 MVPGHHIVSIQVE 118
>gi|431917322|gb|ELK16855.1| Small nuclear ribonucleoprotein-associated protein N [Pteropus
alecto]
Length = 225
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 8 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 64
>gi|242808331|ref|XP_002485140.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
10500]
gi|218715765|gb|EED15187.1| conserved hypothetical protein [Talaromyces stipitatus ATCC
10500]
Length = 116
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S HI+ ++ LL R + + D R F+G F C D N+IL + EYR
Sbjct: 3 NSVHINYLQSLLGRNLRIHTTDTRMFVGIFKCTDMDRNVILANTFEYR 50
>gi|240281222|gb|EER44725.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325092282|gb|EGC45592.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 228
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS------P 76
+N +++ L+ RM V + DGR G DK NI+L D E+R +R S P
Sbjct: 3 ANKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNIVLADTEEFRRVKRKSTKSTQAP 62
Query: 77 ---SPM-----EQRCLGIILIPSSCRTSCHVD 100
+P E+R LG+ ++ + SC VD
Sbjct: 63 GSNTPTLVEAEEKRTLGLTILRGTQVVSCSVD 94
>gi|152012515|gb|AAI50238.1| Unknown (protein for IMAGE:8128378) [Danio rerio]
Length = 116
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEY-RSTRRTSPSPMEQRCLGI 86
++ LL + M + + DGR +G F C D+ N+IL A E+ +ST S S E R LG+
Sbjct: 34 KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKST--DSLSQGEPRVLGL 91
Query: 87 ILIPSSCRTSCHVD 100
+IP S V+
Sbjct: 92 AMIPGHHVVSIEVE 105
>gi|213511656|ref|NP_001134433.1| LSM domain-containing protein 1 [Salmo salar]
gi|209733240|gb|ACI67489.1| LSM domain-containing protein 1 [Salmo salar]
Length = 113
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 10 TLVESSAGSDTKGSNHIS----RVRK----LLCRRMLVGIKDGRFFLGSFHCIDKQGNII 61
T++E + G T G + +S RVR+ LL + M + + DGR +G F C D+ N+I
Sbjct: 3 TMIEEN-GPSTHGQSELSSSSSRVRQKLESLLNKNMRIRMTDGRTLVGLFLCTDRDCNVI 61
Query: 62 LQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVD 100
L A E+ + S S E R LG+ +IP S V+
Sbjct: 62 LGSAQEFLKS-SDSFSQGEPRVLGLAMIPGHHVVSIEVE 99
>gi|354473769|ref|XP_003499105.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Cricetulus griseus]
Length = 339
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 18 SDTKGSNHISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT 74
SD S + + K+L RM ++DGR F+G+F DK N+IL D E+R +
Sbjct: 103 SDAGNSKTVGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPK 162
Query: 75 SPSPM---EQRCLGIILI 89
+ E+R LG++L+
Sbjct: 163 NSKQAEREEKRVLGLVLL 180
>gi|409074536|gb|EKM74931.1| hypothetical protein AGABI1DRAFT_132707 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426192170|gb|EKV42108.1| hypothetical protein AGABI2DRAFT_123228 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S+ I+++ LLC+ + + D R +G+F DK NII+ +A EYR
Sbjct: 3 SSAIAKLNSLLCQPIRISTTDNRILIGTFAGTDKPLNIIITNAEEYR 49
>gi|367044126|ref|XP_003652443.1| hypothetical protein THITE_2113946 [Thielavia terrestris NRRL
8126]
gi|346999705|gb|AEO66107.1| hypothetical protein THITE_2113946 [Thielavia terrestris NRRL
8126]
Length = 197
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPME 80
++ LL + + V D R F G+F C D + NI+L+ EYR P+P E
Sbjct: 22 LQSLLNKNLRVTTTDNRMFWGAFKCTDSESNIVLEHTYEYR-----HPTPRE 68
>gi|390462470|ref|XP_002747491.2| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like isoform 1 [Callithrix jacchus]
Length = 373
Score = 42.0 bits (97), Expect = 0.042, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 149 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 205
>gi|350632124|gb|EHA20492.1| hypothetical protein ASPNIDRAFT_44190 [Aspergillus niger ATCC 1015]
Length = 310
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP-------SPM---- 79
K++ RM V + DGR G DK N++L D E+R +R S +P+
Sbjct: 90 KMINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGSTNAPLVEAE 149
Query: 80 EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC VD
Sbjct: 150 EKRTLGLTIVRGTHVVSCSVD 170
>gi|440633178|gb|ELR03097.1| hypothetical protein GMDG_05936 [Geomyces destructans 20631-21]
Length = 125
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR-----STRRTSPS-----PMEQ 81
LL + + V D R FLG F C D N+IL EYR S +TS + M
Sbjct: 15 LLNKSLRVTTTDKRMFLGEFKCTDSDRNMILARTYEYRLPSESSLPQTSGTGSVTLEMTS 74
Query: 82 RCLGIILIP 90
R LG++++P
Sbjct: 75 RYLGLVVVP 83
>gi|432107554|gb|ELK32804.1| Small nuclear ribonucleoprotein-associated protein N [Myotis
davidii]
Length = 220
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 47 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 103
>gi|47227438|emb|CAG04586.1| unnamed protein product [Tetraodon nigroviridis]
Length = 100
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ LL + M + + DGR +G F C D+ N+IL A E+ + T S E R LG+
Sbjct: 24 KLEGLLNKNMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKSTDTF-SQGEPRVLGLA 82
Query: 88 LIPSSCRTSCHVDC 101
+IP S V+
Sbjct: 83 MIPGHHVISIEVEA 96
>gi|327288953|ref|XP_003229189.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Anolis carolinensis]
Length = 318
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 10/103 (9%)
Query: 13 ESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
E++ G +K HI RM ++DGR F+G+F DK N+IL D E+R +
Sbjct: 78 EATVGKSSKMLQHIDY-------RMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIK 130
Query: 73 RTS---PSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKV 112
+ P E+R LG++L+ S V+ + + +V
Sbjct: 131 PKNSKQPEREEKRVLGLVLLRGENLVSMTVEGPPPKDTGIARV 173
>gi|115398031|ref|XP_001214607.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192798|gb|EAU34498.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 215
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP-------SPM---- 79
K++ RM V + DGR G DK N++L D E+R +R S +P+
Sbjct: 8 KMINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGAANAPLVESE 67
Query: 80 EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC VD
Sbjct: 68 EKRTLGLAIVRGTHVVSCSVD 88
>gi|195161948|ref|XP_002021818.1| GL26293 [Drosophila persimilis]
gi|194103618|gb|EDW25661.1| GL26293 [Drosophila persimilis]
Length = 131
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 43 KLQKWLGHVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 96
Query: 88 LIPSSCRTSCHVD 100
++P S +D
Sbjct: 97 MVPGKHIVSLSID 109
>gi|296807120|ref|XP_002844176.1| SMB [Arthroderma otae CBS 113480]
gi|238843659|gb|EEQ33321.1| SMB [Arthroderma otae CBS 113480]
Length = 226
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 16/94 (17%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR--------- 73
SN +++ L+ RM V + DGR G DK N++L D E+R ++
Sbjct: 3 SNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
Query: 74 --TSPSPM-----EQRCLGIILIPSSCRTSCHVD 100
+S +P E+R LG+ ++ + SC VD
Sbjct: 63 AGSSSTPQLVEAEEKRTLGLTIVRGTHVVSCSVD 96
>gi|198473040|ref|XP_001356154.2| GA16583 [Drosophila pseudoobscura pseudoobscura]
gi|198139272|gb|EAL33214.2| GA16583 [Drosophila pseudoobscura pseudoobscura]
Length = 131
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 43 KLQKWLGHVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 96
Query: 88 LIPSSCRTSCHVD 100
++P S +D
Sbjct: 97 MVPGKHIVSLSID 109
>gi|156350483|ref|XP_001622302.1| predicted protein [Nematostella vectensis]
gi|156208807|gb|EDO30202.1| predicted protein [Nematostella vectensis]
Length = 243
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + S E+R LG++L+
Sbjct: 17 RMRCTLQDGRVFIGTFLAFDKHMNVILGDCDEFRKIKGKSSKAQEREEKRVLGLVLLRGE 76
Query: 93 CRTSCHVD 100
S VD
Sbjct: 77 HLVSMTVD 84
>gi|344297981|ref|XP_003420673.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Loxodonta africana]
Length = 270
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 46 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 105
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 106 NLVSMTVEGPPPKDTGIARV 125
>gi|50540540|ref|NP_991230.1| small nuclear ribonucleoprotein polypeptides B and B1 [Danio rerio]
gi|8099650|gb|AAF72188.1| snRNP-associated protein [Danio rerio]
gi|41351028|gb|AAH65601.1| Small nuclear ribonucleoprotein polypeptides B and B1 [Danio rerio]
Length = 239
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|21536707|gb|AAM61039.1| putative snRNP protein [Arabidopsis thaliana]
Length = 254
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR------STRRTSPSPME 80
S++ + + RM V I+DGR +G F D+ N++L D E+R ++TS E
Sbjct: 7 SKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTSEEREE 66
Query: 81 QRCLGIILI 89
+R LG++L+
Sbjct: 67 RRTLGLVLL 75
>gi|148235975|ref|NP_001080161.1| small nuclear ribonucleoparticle-associated protein (snRNP) mRNA,
clone Sm51 [Xenopus laevis]
gi|114107804|gb|AAI23124.1| Snrpn protein [Xenopus laevis]
Length = 236
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|281338409|gb|EFB13993.1| hypothetical protein PANDA_020738 [Ailuropoda melanoleuca]
Length = 162
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 18 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 77
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 78 NLVSMTVEGPPPKDTGIARV 97
>gi|395506055|ref|XP_003757351.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Sarcophilus harrisii]
Length = 240
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|347543711|tpg|DAA05809.1| TPA_inf: small nuclear ribonucleoprotein polypeptide N [Monodelphis
domestica]
Length = 240
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|27371057|gb|AAH41275.1| Snrpn-prov protein [Xenopus laevis]
Length = 236
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|410083152|ref|XP_003959154.1| hypothetical protein KAFR_0I02400 [Kazachstania africana CBS
2517]
gi|372465744|emb|CCF60019.1| hypothetical protein KAFR_0I02400 [Kazachstania africana CBS
2517]
Length = 171
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 17/89 (19%)
Query: 15 SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR----- 69
SA S K + SR+ L+ R+ V +DGR ++G DK N+IL D VE R
Sbjct: 2 SATSKVKQN---SRLSDLINYRLRVIAQDGRVYIGELLAFDKHMNLILNDCVEERIPKTQ 58
Query: 70 --STRRTSPSPM-------EQRCLGIILI 89
R+TS M E+R LG+I++
Sbjct: 59 QNKIRKTSDDKMLKEAVKIEKRTLGLIIL 87
>gi|47575712|ref|NP_001001198.1| small nuclear ribonucleoprotein polypeptides B and B1 [Xenopus
(Silurana) tropicalis]
gi|45501101|gb|AAH67325.1| SNRPN upstream reading frame [Xenopus (Silurana) tropicalis]
gi|49898984|gb|AAH76700.1| SNRPN upstream reading frame [Xenopus (Silurana) tropicalis]
Length = 237
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|350536589|ref|NP_001232486.1| small nuclear ribonucleoprotein-associated protein N [Taeniopygia
guttata]
gi|197129675|gb|ACH46173.1| putative small nuclear ribonucleoprotein polypeptide B variant 1
[Taeniopygia guttata]
Length = 240
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|62896825|dbj|BAD96353.1| small nuclear ribonucleoprotein polypeptide N variant [Homo
sapiens]
Length = 240
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKVD 113
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARVP 96
>gi|340373526|ref|XP_003385292.1| PREDICTED: LSM domain-containing protein 1-like [Amphimedon
queenslandica]
Length = 114
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEY-------RSTRRTSPSPMEQ 81
++ LL +R+ + IKDGR G F C D N++L + E+ ++ R + +
Sbjct: 7 LQSLLNKRLRISIKDGRVIDGHFMCTDNSCNVVLSNCEEFLTQEDVVKAKNRDTSEAVNI 66
Query: 82 RCLGIILIP 90
R LG+ ++P
Sbjct: 67 RTLGLAIVP 75
>gi|396492012|ref|XP_003843692.1| similar to LSM domain-containing protein 1 [Leptosphaeria
maculans JN3]
gi|312220272|emb|CBY00213.1| similar to LSM domain-containing protein 1 [Leptosphaeria
maculans JN3]
Length = 107
Score = 42.0 bits (97), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 15/85 (17%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST-----RR 73
+T+ S H + + + + + + DGR F G C DK NIIL A EYR+ R+
Sbjct: 2 NTEKSAHW--LSQFIGKNLRIHASDGRVFAGQMKCTDKDRNIILALAHEYRAPSADVIRK 59
Query: 74 T--------SPSPMEQRCLGIILIP 90
T + P R +G+I++P
Sbjct: 60 TVEESGESAAQVPWNPRYVGLIVVP 84
>gi|281200299|gb|EFA74520.1| putative small nuclear ribonucleoparticle-associated protein
[Polysphondylium pallidum PN500]
Length = 250
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ-RCLG 85
S++ + + R+ V I+DGR +G F DK N+++ DA E+R ++ E+ R LG
Sbjct: 7 SKMLQFINWRIRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIKQKGKEDREEKRTLG 66
Query: 86 IILIPSSCRTSCHVDCSIDEQL 107
++LI S + E++
Sbjct: 67 MVLIRGETVVSLSAESPPPEEV 88
>gi|157128615|ref|XP_001655156.1| small nuclear ribonucleoprotein-associated protein [Aedes
aegypti]
gi|94469378|gb|ABF18538.1| U1 snRNP component [Aedes aegypti]
gi|108882220|gb|EAT46445.1| AAEL002377-PA [Aedes aegypti]
Length = 205
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 20 TKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---P 76
T G N+ ++ +LL R+ + ++D R F+G+F DK N+IL D E+R + + P
Sbjct: 2 TIGKNN--KMIQLLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKLP 59
Query: 77 SPMEQRCLGIILI 89
E+R LG +L+
Sbjct: 60 EREEKRVLGFVLL 72
>gi|405119229|gb|AFR94002.1| hypothetical protein CNAG_02689 [Cryptococcus neoformans var.
grubii H99]
Length = 256
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS 70
+R L+ + + + + DGR G F C+DKQ NIIL +A E+R
Sbjct: 26 LRALIGQVLTISLIDGRIIKGYFTCVDKQCNIILNEAEEFRP 67
>gi|45382973|ref|NP_989930.1| small nuclear ribonucleoprotein-associated protein B' [Gallus
gallus]
gi|10720263|sp|Q9PV94.1|RSMB_CHICK RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|5870119|gb|AAD54485.1|AF134830_1 small nuclear ribonucleoprotein B' [Gallus gallus]
Length = 240
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|391345948|ref|XP_003747243.1| PREDICTED: LSM domain-containing protein 1-like [Metaseiulus
occidentalis]
Length = 130
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS 77
+D S +++ L + + V I DGR +G F C+D+ N+I+ + EY S +
Sbjct: 27 TDVNLSEAHAKLSTWLNKSLKVTISDGRILIGVFLCVDRDINLIIGNCNEYLSEDEMKQA 86
Query: 78 PMEQRCLGIILIP 90
++ R LG+ +IP
Sbjct: 87 -VDARYLGLAMIP 98
>gi|351715057|gb|EHB17976.1| Small nuclear ribonucleoprotein-associated protein N
[Heterocephalus glaber]
Length = 237
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
++DGR F+G+F DK N+IL D E+R + +P E+R LG++L+
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCGEFRKIKPKNPKQPEREEKRVLGLVLL 72
>gi|405957470|gb|EKC23678.1| Small nuclear ribonucleoprotein-associated protein B' [Crassostrea
gigas]
Length = 175
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + S E+R LG++L+
Sbjct: 16 RMRCALQDGRTFIGTFKAFDKHMNLILGDCDEFRKIKPKSSKQGEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 HLVSMTVEGPPPAEEGVARV 95
>gi|392580172|gb|EIW73299.1| hypothetical protein TREMEDRAFT_59464 [Tremella mesenterica DSM
1558]
Length = 215
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEY-----RSTR 72
S+T +N ++ ++ LL + + ++DGR F G C+DK N++L A E+ R R
Sbjct: 11 SNTSPTNPLTYLQNLLDSPLRITVRDGRVFTGRLLCVDKGCNVVLMPAEEFLPDPSRMIR 70
Query: 73 RTSPSPMEQR 82
PS + QR
Sbjct: 71 GERPSKIPQR 80
>gi|400603047|gb|EJP70645.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 109
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 35/82 (42%), Gaps = 13/82 (15%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR-STRRTSPSPMEQ--------- 81
LL + + V DGR F G F C D + NI+L EYR + M Q
Sbjct: 13 LLNQNLRVVTTDGRLFWGQFKCTDAESNIVLAHTYEYRPPSEELRAQAMTQAAGGNVTLD 72
Query: 82 ---RCLGIILIPSSCRTSCHVD 100
R LG++++P T V+
Sbjct: 73 MTSRYLGLVVVPGHRITKMEVE 94
>gi|342878277|gb|EGU79632.1| hypothetical protein FOXB_09915 [Fusarium oxysporum Fo5176]
Length = 106
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STR-----------RTSPSP 78
+L + + V DGR F G+ C D NI+L EYR S+R T
Sbjct: 13 ILNKNLRVYTSDGRLFWGALKCTDPDKNIVLAHTYEYRQPSSREREKAAEKADGETVKVD 72
Query: 79 MEQRCLGIILIP 90
M R LG+++IP
Sbjct: 73 MTSRYLGLVVIP 84
>gi|158294309|ref|XP_315523.4| AGAP005523-PA [Anopheles gambiae str. PEST]
gi|157015505|gb|EAA11463.4| AGAP005523-PA [Anopheles gambiae str. PEST]
Length = 202
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 20 TKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---P 76
T G N+ ++ +LL R+ + ++D R F+G+F DK N+IL D E+R + + P
Sbjct: 2 TIGKNN--KMIQLLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKLP 59
Query: 77 SPMEQRCLGIILI 89
E+R LG +L+
Sbjct: 60 EREEKRVLGFVLL 72
>gi|405960791|gb|EKC26669.1| Small nuclear ribonucleoprotein-associated protein B' [Crassostrea
gigas]
Length = 145
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + S E+R LG++L+
Sbjct: 16 RMRCALQDGRTFIGTFKAFDKHMNLILGDCDEFRKIKPKSSKQGEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 HLVSMTVEGPPPAEEGVARV 95
>gi|441617090|ref|XP_003277213.2| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Nomascus leucogenys]
Length = 248
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 56 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLL 112
>gi|361131697|gb|EHL03349.1| putative Small nuclear ribonucleoprotein-associated protein B
[Glarea lozoyensis 74030]
Length = 163
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 16/83 (19%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP------ 76
+N ++ L+ RM V + DGR +G DK N++L D E+R +R +P
Sbjct: 2 ANKQGKMAGLINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKRKAPKSSTAP 61
Query: 77 ------SPM----EQRCLGIILI 89
+P+ E+R LG+ ++
Sbjct: 62 GASSTSAPLVESEEKRTLGLTIV 84
>gi|355692540|gb|EHH27143.1| hypothetical protein EGK_17272 [Macaca mulatta]
Length = 244
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 20 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 79
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 80 NLVSMTVEGPPPKDTGIARV 99
>gi|397475701|ref|XP_003809266.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 2 [Pan paniscus]
gi|193784720|dbj|BAG53873.1| unnamed protein product [Homo sapiens]
gi|355777885|gb|EHH62921.1| hypothetical protein EGM_15778 [Macaca fascicularis]
Length = 244
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 20 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 79
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 80 NLVSMTVEGPPPKDTGIARV 99
>gi|326932120|ref|XP_003212168.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Meleagris gallopavo]
Length = 224
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 5 LQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSM 64
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 65 TVEGPPPKDTGIARV 79
>gi|83769163|dbj|BAE59300.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 216
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 11/81 (13%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-P------SPM---- 79
K++ RM V + DGR G DK N++L D E+R +R S P +P+
Sbjct: 8 KMINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPANAPLVESE 67
Query: 80 EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC VD
Sbjct: 68 EKRTLGLTIVRGTHVVSCSVD 88
>gi|381352839|gb|AFG25597.1| SNRPN [Sus scrofa]
Length = 240
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|348540539|ref|XP_003457745.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Oreochromis niloticus]
Length = 256
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 32 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 91
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 92 NLVSMTVEGPPPKDTGIARV 111
>gi|425777864|gb|EKV16020.1| Small nuclear ribonucleoprotein-associated protein B [Penicillium
digitatum PHI26]
gi|425782633|gb|EKV20532.1| Small nuclear ribonucleoprotein-associated protein B [Penicillium
digitatum Pd1]
Length = 211
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 11/84 (13%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-P------SPM- 79
+++ L+ RM V + DGR GS DK N++L D E+R +R S P +P+
Sbjct: 5 KMQNLINYRMRVTLNDGRQMTGSMLAFDKHMNLVLADTEEFRRIKRKSKPAAGPTNAPLV 64
Query: 80 ---EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC V+
Sbjct: 65 EAEEKRSLGLTIVRGTQVVSCSVE 88
>gi|17509627|ref|NP_493348.1| Protein SNR-2 [Caenorhabditis elegans]
gi|29427664|sp|P91918.1|RSMB_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein-associated
protein B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|3880616|emb|CAB07132.1| Protein SNR-2 [Caenorhabditis elegans]
Length = 160
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
IS+ K++ RM + ++DGR F+G F DK NI+L + E+R + +
Sbjct: 3 ISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGE 62
Query: 80 EQRCLGIILIPSSCRTSCHVD 100
E+R LG++L+ S VD
Sbjct: 63 EKRILGLVLVRGEHIVSMTVD 83
>gi|351712657|gb|EHB15576.1| Small nuclear ribonucleoprotein-associated protein N, partial
[Heterocephalus glaber]
Length = 240
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|4507135|ref|NP_003088.1| small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
gi|7305509|ref|NP_038698.1| small nuclear ribonucleoprotein-associated protein N [Mus musculus]
gi|13027644|ref|NP_073716.1| small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
gi|13027646|ref|NP_073717.1| small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
gi|13027648|ref|NP_073718.1| small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
gi|13027650|ref|NP_073719.1| small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
gi|13592085|ref|NP_112379.1| small nuclear ribonucleoprotein-associated protein N [Rattus
norvegicus]
gi|133725810|ref|NP_001076430.1| small nuclear ribonucleoprotein-associated protein N [Mus musculus]
gi|133725813|ref|NP_001076431.1| small nuclear ribonucleoprotein-associated protein N [Mus musculus]
gi|197101731|ref|NP_001127571.1| small nuclear ribonucleoprotein-associated protein N [Pongo abelii]
gi|378404901|ref|NP_001243726.1| SNRPN upstream reading frame protein [Pan troglodytes]
gi|386781432|ref|NP_001248134.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|291403982|ref|XP_002718330.1| PREDICTED: small nuclear ribonucleoprotein polypeptide N
[Oryctolagus cuniculus]
gi|395859900|ref|XP_003802265.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Otolemur garnettii]
gi|397475699|ref|XP_003809265.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 1 [Pan paniscus]
gi|402873730|ref|XP_003900718.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Papio anubis]
gi|403308913|ref|XP_003944884.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Saimiri boliviensis boliviensis]
gi|426378342|ref|XP_004055890.1| PREDICTED: small nuclear ribonucleoprotein-associated protein N
[Gorilla gorilla gorilla]
gi|52783793|sp|P63164.1|RSMN_RAT RecName: Full=Small nuclear ribonucleoprotein-associated protein N;
Short=snRNP-N; AltName: Full=Sm protein D; Short=Sm-D;
AltName: Full=Sm protein N; Short=Sm-N; Short=SmN
gi|52783794|sp|P63162.1|RSMN_HUMAN RecName: Full=Small nuclear ribonucleoprotein-associated protein N;
Short=snRNP-N; AltName: Full=Sm protein D; Short=Sm-D;
AltName: Full=Sm protein N; Short=Sm-N; Short=SmN;
AltName: Full=Tissue-specific-splicing protein
gi|52783795|sp|P63163.1|RSMN_MOUSE RecName: Full=Small nuclear ribonucleoprotein-associated protein N;
Short=snRNP-N; AltName: Full=Sm protein D; Short=Sm-D;
AltName: Full=Sm protein N; Short=Sm-N; Short=SmN;
AltName: Full=Tissue-specific-splicing protein
gi|75070532|sp|Q5R6I0.1|RSMN_PONAB RecName: Full=Small nuclear ribonucleoprotein-associated protein N;
Short=snRNP-N; AltName: Full=Sm protein N; Short=Sm-N;
Short=SmN
gi|75071163|sp|Q60HD3.1|RSMN_MACFA RecName: Full=Small nuclear ribonucleoprotein-associated protein N;
Short=snRNP-N; AltName: Full=Sm protein N; Short=Sm-N;
Short=SmN
gi|15217059|gb|AAK92481.1|AF400432_1 small nuclear ribonucleoprotein polypeptide N [Homo sapiens]
gi|32040|emb|CAA33901.1| unnamed protein product [Homo sapiens]
gi|54117|emb|CAA44517.1| tissue specific splicing protein [Mus musculus]
gi|207006|gb|AAA42157.1| small nuclear ribonucleoparticle-associated protein [Rattus
norvegicus]
gi|251642|gb|AAA09579.1| SmN protein [Mus musculus]
gi|338247|gb|AAA36617.1| small nuclear ribonucleoprotein [Homo sapiens]
gi|386203|gb|AAB27138.1| SmN [Mus sp.]
gi|407470|emb|CAA45273.1| SmN [Mus musculus]
gi|1145775|gb|AAA98969.1| small nuclear ribonuleoprotein particle N [Homo sapiens]
gi|12653657|gb|AAH00611.1| SNRPN protein [Homo sapiens]
gi|12851037|dbj|BAB28927.1| unnamed protein product [Mus musculus]
gi|13112013|gb|AAH03180.1| Small nuclear ribonucleoprotein polypeptide N [Homo sapiens]
gi|18044571|gb|AAH19589.1| Small nuclear ribonucleoprotein N [Mus musculus]
gi|19264004|gb|AAH25178.1| Small nuclear ribonucleoprotein polypeptide N [Homo sapiens]
gi|19353029|gb|AAH24880.1| Small nuclear ribonucleoprotein N [Mus musculus]
gi|22137346|gb|AAH24777.1| SNRPN protein [Homo sapiens]
gi|47496647|emb|CAG29346.1| SNRPN [Homo sapiens]
gi|52782271|dbj|BAD51982.1| SNRPN upstream reading frame product [Macaca fascicularis]
gi|55731853|emb|CAH92634.1| hypothetical protein [Pongo abelii]
gi|55733355|emb|CAH93359.1| hypothetical protein [Pongo abelii]
gi|56585178|gb|AAH87671.1| Small nuclear ribonucleoprotein polypeptide N [Rattus norvegicus]
gi|67970918|dbj|BAE01801.1| unnamed protein product [Macaca fascicularis]
gi|67971268|dbj|BAE01976.1| unnamed protein product [Macaca fascicularis]
gi|74188458|dbj|BAE25860.1| unnamed protein product [Mus musculus]
gi|90075094|dbj|BAE87227.1| unnamed protein product [Macaca fascicularis]
gi|119578017|gb|EAW57613.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578018|gb|EAW57614.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578019|gb|EAW57615.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578020|gb|EAW57616.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578021|gb|EAW57617.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578022|gb|EAW57618.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578023|gb|EAW57619.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578024|gb|EAW57620.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578025|gb|EAW57621.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578026|gb|EAW57622.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|119578027|gb|EAW57623.1| hCG15924, isoform CRA_a [Homo sapiens]
gi|123987597|gb|ABM83812.1| small nuclear ribonucleoprotein polypeptide N [synthetic construct]
gi|123999102|gb|ABM87134.1| small nuclear ribonucleoprotein polypeptide N [synthetic construct]
gi|149029434|gb|EDL84670.1| rCG23696, isoform CRA_a [Rattus norvegicus]
gi|261859940|dbj|BAI46492.1| small nuclear ribonucleoprotein polypeptide N [synthetic construct]
gi|312150238|gb|ADQ31631.1| SNRPN upstream reading frame [synthetic construct]
gi|380783149|gb|AFE63450.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|383422565|gb|AFH34496.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|384941646|gb|AFI34428.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|384941648|gb|AFI34429.1| small nuclear ribonucleoprotein-associated protein N [Macaca
mulatta]
gi|410215072|gb|JAA04755.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
gi|410257522|gb|JAA16728.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
gi|410306930|gb|JAA32065.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
gi|410338313|gb|JAA38103.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
Length = 240
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|348552642|ref|XP_003462136.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Cavia porcellus]
Length = 248
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 24 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 83
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 84 NLVSMTVEGPPPKDTGIARV 103
>gi|343887452|ref|NP_001230628.1| small nuclear ribonucleoprotein polypeptide N [Sus scrofa]
Length = 240
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|213512296|ref|NP_001134522.1| Small nuclear ribonucleoprotein-associated protein B [Salmo salar]
gi|209734002|gb|ACI67870.1| Small nuclear ribonucleoprotein-associated protein B [Salmo salar]
gi|223647212|gb|ACN10364.1| Small nuclear ribonucleoprotein-associated protein B [Salmo salar]
gi|223673087|gb|ACN12725.1| Small nuclear ribonucleoprotein-associated protein B [Salmo salar]
Length = 237
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|118197470|gb|ABK78698.1| small nuclear ribonucleoprotein N [Macropus eugenii]
Length = 239
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 20 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 79
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 80 TVEGPPPKDTGIARV 94
>gi|452846421|gb|EME48353.1| hypothetical protein DOTSEDRAFT_161831 [Dothistroma septosporum
NZE10]
Length = 105
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 17/103 (16%)
Query: 15 SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST--- 71
SA S I+ + LL R + + DGR F+G C D + NIIL EYR
Sbjct: 2 SAPEPASNSEAITYLTSLLNRTLHLHTSDGRTFVGQLKCTDNERNIILAMTHEYREPSQQ 61
Query: 72 --------------RRTSPSPMEQRCLGIILIPSSCRTSCHVD 100
+ T M++R +G++++P T V+
Sbjct: 62 DIERAMSRHEVEGGKGTFNVDMKKRFVGLVVVPGRFVTKIEVE 104
>gi|432858790|ref|XP_004068940.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Oryzias latipes]
Length = 240
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|402535853|gb|AFQ62602.1| small nuclear ribonucleoprotein N, partial [Phodopus campbelli]
Length = 222
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 11 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 70
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 71 NLVSMTVEGPPPKDTGIARV 90
>gi|57045593|ref|XP_536165.1| PREDICTED: small nuclear ribonucleoprotein-associated protein N
isoform 4 [Canis lupus familiaris]
gi|149691049|ref|XP_001492752.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 1 [Equus caballus]
gi|301789820|ref|XP_002930324.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Ailuropoda melanoleuca]
gi|338717714|ref|XP_003363686.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 2 [Equus caballus]
gi|417397683|gb|JAA45875.1| Putative u1 snrnp component [Desmodus rotundus]
Length = 240
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|261204882|ref|XP_002627178.1| small nuclear ribonucleoprotein SmB [Ajellomyces dermatitidis
SLH14081]
gi|239592237|gb|EEQ74818.1| small nuclear ribonucleoprotein SmB [Ajellomyces dermatitidis
SLH14081]
gi|239611606|gb|EEQ88593.1| small nuclear ribonucleoprotein SmB [Ajellomyces dermatitidis ER-3]
gi|327348380|gb|EGE77237.1| small nuclear ribonucleoprotein SmB [Ajellomyces dermatitidis ATCC
18188]
Length = 226
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 14/92 (15%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT-------- 74
+N +++ L+ RM V + DGR G DK N++L D E+R +R
Sbjct: 3 ANKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKPTKSTQAP 62
Query: 75 -SPSPM-----EQRCLGIILIPSSCRTSCHVD 100
S +P E+R LG+ ++ + SC VD
Sbjct: 63 GSSTPTLVEAEEKRTLGLTIVRGTHVVSCSVD 94
>gi|402535855|gb|AFQ62603.1| small nuclear ribonucleoprotein N, partial [Phodopus sungorus]
Length = 220
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 11 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 70
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 71 NLVSMTVEGPPPKDTGIARV 90
>gi|312374503|gb|EFR22046.1| hypothetical protein AND_15819 [Anopheles darlingi]
Length = 196
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGII 87
+LL R+ + ++D R F+G+F DK N+IL D E+R + + P E+R LG +
Sbjct: 3 QLLNYRVRIVLQDSRIFIGTFKAFDKHMNLILGDCEEFRKIKPKNNKLPEREEKRVLGFV 62
Query: 88 LI 89
L+
Sbjct: 63 LL 64
>gi|410932467|ref|XP_003979615.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like, partial [Takifugu rubripes]
Length = 225
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|170040621|ref|XP_001848091.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
gi|167864230|gb|EDS27613.1| small nuclear ribonucleoprotein-associated protein B [Culex
quinquefasciatus]
Length = 196
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGII 87
+LL R+ + ++D R F+G+F DK N+IL D E+R + + P E+R LG +
Sbjct: 3 QLLNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKLPEREEKRVLGFV 62
Query: 88 LI 89
L+
Sbjct: 63 LL 64
>gi|308808908|ref|XP_003081764.1| unnamed protein product [Ostreococcus tauri]
gi|116060230|emb|CAL56289.1| unnamed protein product [Ostreococcus tauri]
Length = 98
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 42 KDGRFFLGSFHCIDKQGNIILQDAVEY 68
KDGR F+G+ C+DKQ N++L +A +Y
Sbjct: 18 KDGRVFVGALRCVDKQRNVVLSNAAQY 44
>gi|344252129|gb|EGW08233.1| Small nuclear ribonucleoprotein-associated protein N [Cricetulus
griseus]
Length = 232
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 8 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 67
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 68 NLVSMTVEGPPPKDTGIARV 87
>gi|341902435|gb|EGT58370.1| hypothetical protein CAEBREN_14673 [Caenorhabditis brenneri]
Length = 159
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
IS+ K++ RM + ++DGR F+G F DK NI+L + E+R + +
Sbjct: 3 ISKNNKMMAHLNYRMKIILQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKADGE 62
Query: 80 EQRCLGIILIPSSCRTSCHVD 100
E+R LG++L+ S VD
Sbjct: 63 EKRILGLVLLRGEHIVSMTVD 83
>gi|408388532|gb|EKJ68216.1| hypothetical protein FPSE_11683 [Fusarium pseudograminearum
CS3096]
Length = 106
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 34/72 (47%), Gaps = 13/72 (18%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPS-----------P 78
+L + + V DGR F GS C D NI+L EYR S+R + +
Sbjct: 13 ILNKNLRVYTSDGRLFWGSLKCTDPDRNIVLSHTYEYRQPSSRERAKAVEEADGASVKVD 72
Query: 79 MEQRCLGIILIP 90
M R LG+++IP
Sbjct: 73 MTSRYLGLVVIP 84
>gi|3142634|gb|AAC78612.1| small nuclear ribonucleoprotein N [Mus musculus]
Length = 240
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|315045376|ref|XP_003172063.1| SMB [Arthroderma gypseum CBS 118893]
gi|311342449|gb|EFR01652.1| SMB [Arthroderma gypseum CBS 118893]
Length = 207
Score = 41.2 bits (95), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-----PS 77
SN +++ L+ RM V + DGR G DK N++L D E+R ++ S +
Sbjct: 3 SNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
Query: 78 PM-----------EQRCLGIILIPSSCRTSCHVD 100
P E+R LG+ ++ + SC VD
Sbjct: 63 PGSSSTTQLVEAEEKRTLGLTIVRGTHVVSCSVD 96
>gi|67526669|ref|XP_661396.1| hypothetical protein AN3792.2 [Aspergillus nidulans FGSC A4]
gi|40740810|gb|EAA60000.1| hypothetical protein AN3792.2 [Aspergillus nidulans FGSC A4]
gi|259481653|tpe|CBF75374.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 113
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 19/97 (19%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---------STRR 73
S + + L+ R + V D R F+G F C D NIIL + EYR +
Sbjct: 4 SKAVQYLESLIGRTLRVHATDTRIFVGVFKCTDAARNIILANTHEYRYPTTAAVQDAALN 63
Query: 74 TSP-SP---------MEQRCLGIILIPSSCRTSCHVD 100
T+P +P M R +G++++P TS ++
Sbjct: 64 TTPETPKESQKLKLNMTSRFIGLVVVPGQHITSIELE 100
>gi|123474847|ref|XP_001320604.1| Sm protein [Trichomonas vaginalis G3]
gi|121903413|gb|EAY08381.1| Sm protein [Trichomonas vaginalis G3]
Length = 158
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 4/76 (5%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ--RCL 84
S++ K + R+ V I D R+F+G D NI+L+D EYR R +++ R +
Sbjct: 7 SKLSKFINSRVKVVISDHRYFVGQMLAFDTHSNIVLKDCEEYRRLNRRKAGELQEAKRNI 66
Query: 85 GIILIPSSCRTSCHVD 100
G++++ T H+D
Sbjct: 67 GLMIL--RGETVLHID 80
>gi|327304287|ref|XP_003236835.1| small nuclear ribonucleoprotein SmB [Trichophyton rubrum CBS
118892]
gi|326459833|gb|EGD85286.1| small nuclear ribonucleoprotein SmB [Trichophyton rubrum CBS
118892]
Length = 226
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 16/94 (17%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-----PS 77
SN +++ L+ RM V + DGR G DK N++L D E+R ++ S +
Sbjct: 3 SNKQGKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAA 62
Query: 78 PM-----------EQRCLGIILIPSSCRTSCHVD 100
P E+R LG+ ++ + SC VD
Sbjct: 63 PGSSSTAQLVEAEEKRTLGLTIVRGTHVVSCSVD 96
>gi|440892840|gb|ELR45856.1| Small nuclear ribonucleoprotein-associated protein N, partial [Bos
grunniens mutus]
Length = 240
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKVD 113
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARVP 96
>gi|156339571|ref|XP_001620201.1| hypothetical protein NEMVEDRAFT_v1g148799 [Nematostella vectensis]
gi|156204779|gb|EDO28101.1| predicted protein [Nematostella vectensis]
Length = 86
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 32/68 (47%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSS 92
L + M V I DGR +GSF C DK NIIL E+ + R LG+ ++P
Sbjct: 8 LNKLMRVKISDGRTLIGSFLCTDKDRNIILGSCQEFSLLLSLGVDKEDPRILGLAMVPGR 67
Query: 93 CRTSCHVD 100
S VD
Sbjct: 68 HIQSIEVD 75
>gi|119331232|ref|NP_001073265.1| small nuclear ribonucleoprotein-associated protein N [Bos taurus]
gi|426248002|ref|XP_004017755.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like isoform 1 [Ovis aries]
gi|115311861|sp|Q17QN3.1|RSMN_BOVIN RecName: Full=Small nuclear ribonucleoprotein-associated protein N;
Short=snRNP-N; AltName: Full=Sm protein N; Short=Sm-N;
Short=SmN
gi|109659180|gb|AAI18261.1| Small nuclear ribonucleoprotein polypeptide N [Bos taurus]
gi|152001106|gb|AAI47855.1| SNRPN protein [Bos taurus]
gi|296475633|tpg|DAA17748.1| TPA: small nuclear ribonucleoprotein-associated protein N [Bos
taurus]
Length = 240
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKVD 113
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARVP 96
>gi|346973851|gb|EGY17303.1| LSM domain-containing protein [Verticillium dahliae VdLs.17]
Length = 116
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 15/74 (20%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS---------------TRRTSP 76
LL + + V DGR FLG F C D N++L EYR +
Sbjct: 15 LLNKNLRVVATDGRMFLGQFKCTDPDQNVVLAHTYEYRQPTVQQQGDAARAAGANAESVK 74
Query: 77 SPMEQRCLGIILIP 90
M R LG++++P
Sbjct: 75 MDMTSRYLGLVVVP 88
>gi|148230773|ref|NP_001084541.1| LSM domain-containing protein 1-B [Xenopus laevis]
gi|82185514|sp|Q6NU60.1|LMD1B_XENLA RecName: Full=LSM domain-containing protein 1-B
gi|46250206|gb|AAH68740.1| MGC81227 protein [Xenopus laevis]
Length = 111
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 1 MEQKVETTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNI 60
+E+ TE+ ++ G ++ LL R M + + DGR +G F C D+ N+
Sbjct: 5 LEENGYITESCPRTADSDVESGDTARHKLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNV 64
Query: 61 ILQDAVEYRSTRRTSPS--PMEQRCLGIILIPSSCRTSCHVDCSIDEQ 106
IL A E+ R S S E R LG+ ++P S V+ Q
Sbjct: 65 ILGSAQEF---LRPSDSFRIREPRVLGLAMVPGHHIVSIQVELETSPQ 109
>gi|268561770|ref|XP_002646524.1| C. briggsae CBR-SNR-2 protein [Caenorhabditis briggsae]
Length = 160
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
IS+ K++ RM + ++DGR F+G F DK NI+L + E+R + +
Sbjct: 3 ISKNNKMMAHLNYRMKIILQDGRTFVGFFKAFDKHMNILLAECEEHRQIKPKAGKKADGE 62
Query: 80 EQRCLGIILIPSSCRTSCHVD 100
E+R LG++L+ S VD
Sbjct: 63 EKRILGLVLLRGEHIVSMTVD 83
>gi|225712124|gb|ACO11908.1| LSM domain-containing protein 1 [Lepeophtheirus salmonis]
Length = 119
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 30 RKLLCRRM----LVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 85
RKLL + ++ + DGR G+F C D+ N+IL EY S + LG
Sbjct: 9 RKLLNNWLKKSTVIHLSDGRHVEGTFLCTDRDANVILSACTEY-----VEDSAAGSKFLG 63
Query: 86 IILIPSSCRTSCHVDC 101
++L+P S ++D
Sbjct: 64 LVLVPGKHIKSIYIDV 79
>gi|327288762|ref|XP_003229094.1| PREDICTED: LSM domain-containing protein 1-like [Anolis
carolinensis]
Length = 123
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ LL + M + + DGR +G F C D+ N+IL A EY S S E R LG+
Sbjct: 42 KLENLLNKSMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEYLKA-SDSFSAGEPRVLGLA 100
Query: 88 LIPSSCRTSCHVD 100
++P S V+
Sbjct: 101 MVPGHHIVSIEVE 113
>gi|198419526|ref|XP_002123184.1| PREDICTED: similar to small nuclear ribonucleoprotein
polypeptides B and B1 isoform 1 [Ciona intestinalis]
Length = 167
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR--RTSPSPMEQRCL 84
S++ + RM ++DGR F+G+F DK N+IL D E+R R + + E+R L
Sbjct: 7 SKLNNHINYRMRCILQDGRVFIGTFKAFDKHMNLILVDCDEFRRVRPKKGATDREEKRTL 66
Query: 85 GIILI 89
G++L+
Sbjct: 67 GLVLL 71
>gi|126137772|ref|XP_001385409.1| hypothetical protein PICST_49015 [Scheffersomyces stipitis CBS
6054]
gi|126092687|gb|ABN67380.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 92
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
+ + + V IKDGR G ID GN++L + +E S SP + +R +G++ +P
Sbjct: 13 QFIGSNLRVAIKDGRVVTGILTVIDPFGNLLLSNVIE-ESEDIISPPGIHKRDIGLVSVP 71
Query: 91 SSCRTSCHVDCSIDEQL 107
+ VD + +L
Sbjct: 72 RETIVTVSVDTNTHRRL 88
>gi|58260888|ref|XP_567854.1| hypothetical protein CNK01770 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57229935|gb|AAW46337.1| hypothetical protein CNK01770 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 214
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+R L+ + + + + DGR G F C+DKQ N+IL +A E+R
Sbjct: 90 LRALIGQVLTITLIDGRIIKGYFTCVDKQCNVILNEAEEFR 130
>gi|212537667|ref|XP_002148989.1| small nuclear ribonucleoprotein SmB, putative [Talaromyces
marneffei ATCC 18224]
gi|210068731|gb|EEA22822.1| small nuclear ribonucleoprotein SmB, putative [Talaromyces
marneffei ATCC 18224]
Length = 202
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 12/90 (13%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
+N +++ L+ RM V + DGR G DK N++L D E+R +R +
Sbjct: 3 ANKQGKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKAAKQAPGA 62
Query: 80 ---------EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC VD
Sbjct: 63 AAAPLVEAEEKRTLGLTIVRGTNVVSCSVD 92
>gi|58260890|ref|XP_567855.1| hypothetical protein CNK01770 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134117153|ref|XP_772803.1| hypothetical protein CNBK1770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255421|gb|EAL18156.1| hypothetical protein CNBK1770 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229936|gb|AAW46338.1| hypothetical protein CNK01770 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 215
Score = 40.8 bits (94), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+R L+ + + + + DGR G F C+DKQ N+IL +A E+R
Sbjct: 90 LRALIGQVLTITLIDGRIIKGYFTCVDKQCNVILNEAEEFR 130
>gi|241562203|ref|XP_002401328.1| flagelliform silk protein, putative [Ixodes scapularis]
gi|215499857|gb|EEC09351.1| flagelliform silk protein, putative [Ixodes scapularis]
Length = 241
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
IS+ K+L RM V ++D R F+G+F DK N+IL D E+R + + +
Sbjct: 3 ISKNNKMLQHINYRMRVILQDSRIFIGTFKAFDKHMNLILGDCEEFRKVKGKNQAKQGDR 62
Query: 80 -EQRCLGIILI 89
E+R LG++L+
Sbjct: 63 EEKRVLGLVLL 73
>gi|336378364|gb|EGO19522.1| hypothetical protein SERLADRAFT_479054 [Serpula lacrymans var.
lacrymans S7.9]
Length = 101
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
+RKLL + + +DGR F+G+F D+ NI+L + EYR P+ R +G ++
Sbjct: 16 LRKLLKETLRIRSQDGRIFVGTFMGTDQLLNILLLNTEEYRIGTEEYPNG---RFVGQVM 72
Query: 89 IPSSCRTSC 97
IP S
Sbjct: 73 IPWKLVISA 81
>gi|290891746|gb|ADD69960.1| small ribonucleoprotein SmB [Schmidtea mediterranea]
Length = 177
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPSPMEQRCL 84
+++ + L RM ++DGR +G+F DK N+IL D E+R ++ + E+R L
Sbjct: 5 AKITQHLEYRMRATLQDGRQLVGTFKAFDKHMNVILCDCDEFRKVKSKGSREEKEEKRSL 64
Query: 85 GIILIPSSCRTSCHVD 100
G +LI S +VD
Sbjct: 65 GFVLIRGEQLVSLNVD 80
>gi|358368859|dbj|GAA85475.1| LSM domain protein [Aspergillus kawachii IFO 4308]
Length = 117
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
Query: 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
G+ + + L+ R + V D R F+G+F C D NIIL EYR PSP
Sbjct: 3 GNQAVQYLDSLIGRTLRVHATDTRIFVGTFKCTDAARNIILASTYEYR-----FPSP 54
>gi|332639433|pdb|2Y9A|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639440|pdb|2Y9A|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639447|pdb|2Y9A|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639457|pdb|2Y9B|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639464|pdb|2Y9B|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639471|pdb|2Y9B|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639481|pdb|2Y9C|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639488|pdb|2Y9C|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639495|pdb|2Y9C|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639505|pdb|2Y9D|A Chain A, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639512|pdb|2Y9D|H Chain H, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639519|pdb|2Y9D|O Chain O, Structure Of The Spliceosomal U4 Snrnp Core Domain
Length = 95
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 15 SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT 74
+ G +K HI RM ++DGR F+G+F DK N+IL D E+R +
Sbjct: 2 TVGKSSKMLQHIDY-------RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPK 54
Query: 75 SPSPM---EQRCLGIILI 89
+ E+R LG++L+
Sbjct: 55 NSKQAEREEKRVLGLVLL 72
>gi|15241519|ref|NP_199263.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|79329893|ref|NP_001032011.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|9758703|dbj|BAB09157.1| unnamed protein product [Arabidopsis thaliana]
gi|14596137|gb|AAK68796.1| Unknown protein [Arabidopsis thaliana]
gi|18377438|gb|AAL66885.1| unknown protein [Arabidopsis thaliana]
gi|51971895|dbj|BAD44612.1| unknown protein [Arabidopsis thaliana]
gi|62320496|dbj|BAD95039.1| hypothetical protein [Arabidopsis thaliana]
gi|332007733|gb|AED95116.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
gi|332007734|gb|AED95117.1| small nuclear ribonucleoprotein B and B' [Arabidopsis thaliana]
Length = 254
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR------STRRTSPSPME 80
S++ + + RM V I+DGR +G F D+ N++L D E+R ++T+ E
Sbjct: 7 SKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREE 66
Query: 81 QRCLGIILI 89
+R LG++L+
Sbjct: 67 RRTLGLVLL 75
>gi|317029590|ref|XP_001391936.2| LSM domain protein [Aspergillus niger CBS 513.88]
gi|350635888|gb|EHA24249.1| hypothetical protein ASPNIDRAFT_209414 [Aspergillus niger ATCC
1015]
Length = 117
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ 81
G+ + + L+ R + V D R F+G+F C D NIIL EYR PSP
Sbjct: 3 GNKAVQYLDSLIGRTLRVHATDTRIFVGTFKCTDAARNIILASTYEYR-----FPSPSTV 57
Query: 82 R 82
R
Sbjct: 58 R 58
>gi|340897383|gb|EGS16973.1| putative RNA splicing factor [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 211
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)
Query: 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---- 79
N ++ + RM V + DGR G DK N++L D E+R T+R P
Sbjct: 6 NRQGKMAGYINWRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKTKRMQAKPNSSTT 65
Query: 80 ------EQRCLGIILI 89
E+R LG+ ++
Sbjct: 66 QTLIQEEKRTLGLTIV 81
>gi|302415935|ref|XP_003005799.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261355215|gb|EEY17643.1| LSM domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 120
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 15/74 (20%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---------------STRRTSP 76
LL + + V DGR FLG F C D N++L EYR + +
Sbjct: 15 LLNKNLRVVATDGRMFLGQFKCTDPDQNVVLAHTYEYRRPTFQQQGDAARAAGANAESVK 74
Query: 77 SPMEQRCLGIILIP 90
M R LG++++P
Sbjct: 75 MDMTSRYLGLVVVP 88
>gi|225712414|gb|ACO12053.1| LSM domain-containing protein 1 [Lepeophtheirus salmonis]
Length = 119
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 30 RKLLCRRM----LVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 85
RKLL + ++ + DGR G+F C D+ N+IL EY S + LG
Sbjct: 9 RKLLNNWLKKSTVIHLSDGRHVEGTFLCTDRDANVILSACTEY-----VEDSAAGSKFLG 63
Query: 86 IILIPSSCRTSCHVDC 101
++L+P S ++D
Sbjct: 64 LVLVPGKHIKSIYIDV 79
>gi|332022693|gb|EGI62970.1| Small nuclear ribonucleoprotein-associated protein B [Acromyrmex
echinatior]
Length = 207
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 17 GSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
G + K HI+ RVR +L +D R F+G+F DK N+IL D E+R + +
Sbjct: 4 GKNNKMLQHINYRVRIIL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKN 55
Query: 76 ---PSPMEQRCLGIILI 89
P E+R LG +L+
Sbjct: 56 TKQPEREEKRVLGFVLL 72
>gi|46108038|ref|XP_381077.1| hypothetical protein FG00901.1 [Gibberella zeae PH-1]
Length = 106
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPS-----------P 78
+L + + V DGR F GS C D NI+L EYR S+R +
Sbjct: 13 ILNKNLRVYTSDGRLFWGSLKCTDPDRNIVLSHTYEYRQPSSREREKAVEEADGASVKVD 72
Query: 79 MEQRCLGIILIP 90
M R LG+++IP
Sbjct: 73 MTSRYLGLVVIP 84
>gi|312372861|gb|EFR20732.1| hypothetical protein AND_19609 [Anopheles darlingi]
Length = 487
Score = 40.4 bits (93), Expect = 0.12, Method: Composition-based stats.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 14/97 (14%)
Query: 2 EQKVETTETLVESSAGSDTKGSNHI----SRVRKLL----CRRMLVGIKDGRFFLGSFHC 53
++ ET E ++ + + K I +R R LL R + + DGR +G F C
Sbjct: 377 DEDSETEEVTLDETELAKAKEMERILCRDNRKRDLLKSWLNRMFRIKMTDGRILMGFFVC 436
Query: 54 IDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
D N++LQ A EY E+R LG+++IP
Sbjct: 437 TDADANVVLQLASEYTEIGG------EERYLGLVMIP 467
>gi|6730226|pdb|1D3B|B Chain B, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730228|pdb|1D3B|D Chain D, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730230|pdb|1D3B|F Chain F, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730232|pdb|1D3B|H Chain H, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730234|pdb|1D3B|J Chain J, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
gi|6730236|pdb|1D3B|L Chain L, Crystal Structure Of The D3b Subcomplex Of The Human
Core Snrnp Domain At 2.0a Resolution
Length = 91
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 15 SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT 74
+ G +K HI RM ++DGR F+G+F DK N+IL D E+R +
Sbjct: 2 TVGKSSKMLQHIDY-------RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPK 54
Query: 75 SPSPM---EQRCLGIILI 89
+ E+R LG++L+
Sbjct: 55 NSKQAEREEKRVLGLVLL 72
>gi|323450318|gb|EGB06200.1| hypothetical protein AURANDRAFT_16819, partial [Aureococcus
anophagefferens]
Length = 81
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR------TSPSPMEQRCLGIILI 89
RM V I D R +G+F DK N++L D EYR + S E+R LG++L+
Sbjct: 8 RMRVTIADSRTLVGTFLAFDKHMNLVLADCEEYRKIKAKKGTVGISEEREEKRTLGLVLL 67
Query: 90 PSSCRTSCHVD 100
S V+
Sbjct: 68 RGEMVVSLSVE 78
>gi|321263927|ref|XP_003196681.1| hypothetical protein CGB_K2230W [Cryptococcus gattii WM276]
gi|317463158|gb|ADV24894.1| Hypothetical protein CGB_K2230W [Cryptococcus gattii WM276]
Length = 202
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+R L+ + + V + DGR G F C+DKQ NIIL +A E+R
Sbjct: 72 LRALIGQALTVTLIDGRTIKGYFTCVDKQCNIILNEAEEFR 112
>gi|392596958|gb|EIW86280.1| hypothetical protein CONPUDRAFT_148373 [Coniophora puteana
RWD-64-598 SS2]
Length = 106
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ 81
G I+ ++KLL + + DGR F+G+F D+ N++L + EYR + +P
Sbjct: 7 GREPINELKKLLKEMLRIVTSDGRVFIGTFVGTDQLLNVLLVNTEEYRVHPTANANP-NG 65
Query: 82 RCLGIILIP 90
R +G ++IP
Sbjct: 66 RFVGQVMIP 74
>gi|156036372|ref|XP_001586297.1| hypothetical protein SS1G_12875 [Sclerotinia sclerotiorum 1980]
gi|154698280|gb|EDN98018.1| hypothetical protein SS1G_12875 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 216
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 16/75 (21%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP-----------SPM 79
K++ RM V + DGR +G DK N++L D E+R +R +P +P+
Sbjct: 7 KMINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKRKAPKATTAPGASSAAPL 66
Query: 80 -----EQRCLGIILI 89
E+R LG+ +I
Sbjct: 67 LVETEEKRTLGLTII 81
>gi|297794953|ref|XP_002865361.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
gi|297311196|gb|EFH41620.1| hypothetical protein ARALYDRAFT_494537 [Arabidopsis lyrata subsp.
lyrata]
Length = 256
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR------STRRTSPSPME 80
S++ + + RM V I+DGR +G F D+ N++L D E+R +++T E
Sbjct: 7 SKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGSKKTKEDREE 66
Query: 81 QRCLGIILI 89
+R LG++L+
Sbjct: 67 RRTLGLVLL 75
>gi|428178017|gb|EKX46894.1| hypothetical protein GUITHDRAFT_152240 [Guillardia theta CCMP2712]
Length = 210
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
L +R+LV ++DGR F+G D+ GN++L+DA E
Sbjct: 94 LDKRVLVTLRDGRHFVGFMRSFDQYGNVVLEDAFE 128
>gi|51970288|dbj|BAD43836.1| unknown protein [Arabidopsis thaliana]
Length = 254
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 6/69 (8%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR------STRRTSPSPME 80
S++ + + RM V I+DGR +G F D+ N++L D E+R ++T+ E
Sbjct: 7 SKMLQFINYRMRVTIQDGRQLIGKFMAFDRHMNLVLGDCEEFRKLPPAKGNKKTNEEREE 66
Query: 81 QRCLGIILI 89
+R LG++L+
Sbjct: 67 RRTLGLVLL 75
>gi|294882102|ref|XP_002769608.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239873160|gb|EER02326.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 83
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
LL + + V + DGR G +CID + NI+L++AVE RR R +GI++IP
Sbjct: 12 LLHKCLRVTLTDGRDITGRLYCIDNKENIVLRNAVE---KRRRDGEYSSVRKIGIVMIP 67
>gi|195030776|ref|XP_001988223.1| GH10685 [Drosophila grimshawi]
gi|193904223|gb|EDW03090.1| GH10685 [Drosophila grimshawi]
Length = 123
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L R + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 49 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 102
Query: 88 LIPSSCRTSCHVD 100
++ S ++D
Sbjct: 103 MVAKKHIVSLNID 115
>gi|303390224|ref|XP_003073343.1| U6 snRNA-associated Sm-like protein [Encephalitozoon intestinalis
ATCC 50506]
gi|303302489|gb|ADM11983.1| U6 snRNA-associated Sm-like protein [Encephalitozoon intestinalis
ATCC 50506]
Length = 88
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
K + R+ V +KDGR+ G+ +D+ N++L D+ E+R+ R S P +R LG+++
Sbjct: 7 KYVNYRVKVKMKDGRWMEGTMLSVDEDVNVVLDDSEEFRNA-RGSKEP-RRRVLGLVM 62
>gi|295672636|ref|XP_002796864.1| hypothetical protein PAAG_00723 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282236|gb|EEH37802.1| hypothetical protein PAAG_00723 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 227
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 14/88 (15%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS----------- 75
+++ L+ RM V + DGR G DK N++L D E+R +R S
Sbjct: 7 GKMQNLINYRMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSTKTTQAPGSST 66
Query: 76 PSPM---EQRCLGIILIPSSCRTSCHVD 100
PS + E+R LG+ ++ + SC VD
Sbjct: 67 PSLVEVEEKRTLGLTIVRGTHVVSCSVD 94
>gi|36495|emb|CAA34288.1| SmB /B' autoimmune antigene [Homo sapiens]
Length = 218
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 43 DGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSCHV 99
DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S V
Sbjct: 1 DGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSMTV 60
Query: 100 DCSIDEQLSLLKV 112
+ + + +V
Sbjct: 61 EGPPPKDTGIARV 73
>gi|195398353|ref|XP_002057786.1| GJ18323 [Drosophila virilis]
gi|194141440|gb|EDW57859.1| GJ18323 [Drosophila virilis]
Length = 117
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L R + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 43 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 96
Query: 88 LIPSSCRTSCHVD 100
++ S ++D
Sbjct: 97 MVAKKHIVSLNID 109
>gi|189206872|ref|XP_001939770.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975863|gb|EDU42489.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 107
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR-------------STRRTSPS 77
+ + + + + DGR F G C DK NIIL A EYR S ++P
Sbjct: 12 QFIGKNLRIHASDGRVFGGQMKCTDKDRNIILALAHEYRAPSAETIRKAVEESGNPSAPV 71
Query: 78 PMEQRCLGIILIP 90
R +G+I++P
Sbjct: 72 AWNSRYVGLIVVP 84
>gi|219117519|ref|XP_002179554.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409445|gb|EEC49377.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 165
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM-----EQ 81
S++ + + R+ V + DGR +G+F DK N++L +A E+R+ + + + E+
Sbjct: 7 SKLLRYVEHRLRVTLHDGRSIVGTFLAFDKHLNLVLSEAEEFRTLKSKGGAALLEERTEK 66
Query: 82 RCLGIILI 89
R LG++LI
Sbjct: 67 RSLGLVLI 74
>gi|157118205|ref|XP_001659059.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108875784|gb|EAT40009.1| AAEL008228-PA [Aedes aegypti]
Length = 120
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 39 VGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCH 98
+ + DGR +G F C D N+IL E+ + + E+R LG+++IP S
Sbjct: 57 IKMTDGRILIGMFVCTDADANVILGMTSEF------TENGGEERVLGLVMIPGRYIVSIE 110
Query: 99 VD 100
+D
Sbjct: 111 ID 112
>gi|392512800|emb|CCI73964.1| ECU08_0545 [Encephalitozoon cuniculi GB-M1]
Length = 79
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGI 86
S + K + R+ V ++DGR+ G+ +D+ N++L D E+R +R+ S +R LG+
Sbjct: 3 SNLTKYIDYRVKVRMRDGRWMEGTMLAVDEDVNVVLDDCEEFRKAKRSRES--RRRVLGL 60
Query: 87 ILI 89
+++
Sbjct: 61 VVV 63
>gi|225555023|gb|EEH03316.1| LSM domain-containing protein [Ajellomyces capsulatus G186AR]
Length = 129
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP------- 78
+ + LL + + + D R F+G+F C D NIIL EYR P
Sbjct: 7 VKYLESLLGKTLRIHTTDARLFVGTFKCTDNDRNIILSTTHEYRYPTIPEHEPANPTRED 66
Query: 79 -----------MEQRCLGIILIPSSCRTSCHVD 100
M R +G++++P T +D
Sbjct: 67 DYTATGVVKADMASRYIGLVVVPGHYITKIELD 99
>gi|126644035|ref|XP_001388176.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117253|gb|EAZ51353.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 139
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
++K + R+ V ++D R +G+ D+ N++L D EYR ++ S +R LG+I+
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEESKELKRSLGLIM 60
Query: 89 I 89
+
Sbjct: 61 L 61
>gi|239790777|dbj|BAH71926.1| ACYPI006936 [Acyrthosiphon pisum]
Length = 209
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM-------EQRCLGIIL 88
R+ V ++D R F+G+F DK N+IL D E+R + + P E+R LG +L
Sbjct: 16 RVRVILQDSRMFIGTFKAFDKHMNLILADCEEFRRLKSKAKVPTIPAEPREEKRVLGFVL 75
Query: 89 I 89
+
Sbjct: 76 L 76
>gi|367001350|ref|XP_003685410.1| hypothetical protein TPHA_0D03410 [Tetrapisispora phaffii CBS
4417]
gi|357523708|emb|CCE62976.1| hypothetical protein TPHA_0D03410 [Tetrapisispora phaffii CBS
4417]
Length = 179
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S++R L+ R+ V KDG+ +LG DK N++L D VE R
Sbjct: 14 SKLRNLINYRIRVVTKDGKLYLGELMAFDKHMNVVLGDCVEER 56
>gi|427782609|gb|JAA56756.1| Putative small nuclear ribonucleoprotein-associated protein b and
b' [Rhipicephalus pulchellus]
Length = 239
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 7/71 (9%)
Query: 26 ISRVRKLL---CRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
IS+ K+L RM V ++D R F+G+F DK N+IL D E+R + S +
Sbjct: 3 ISKNNKMLQHINYRMRVILQDSRIFIGTFKAFDKHMNLILGDCEEFRKVKGKSQARHGDR 62
Query: 80 -EQRCLGIILI 89
E+R LG++L+
Sbjct: 63 EEKRVLGLVLL 73
>gi|432105625|gb|ELK31819.1| LSM domain-containing protein 1 [Myotis davidii]
Length = 158
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + +++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 68 DSPAARARQQLQALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 126
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 127 GEPRVLGLAMVPG 139
>gi|357494377|ref|XP_003617477.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
gi|355518812|gb|AET00436.1| Small nuclear ribonucleoprotein-associated protein B [Medicago
truncatula]
Length = 394
Score = 40.0 bits (92), Expect = 0.18, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 6/69 (8%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS------TRRTSPSPME 80
S++ + + RM V I+DGR +G F D+ N++L D E+R + T +
Sbjct: 7 SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTTDGDRED 66
Query: 81 QRCLGIILI 89
+R LG++L+
Sbjct: 67 RRTLGLVLL 75
>gi|294885961|ref|XP_002771488.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875192|gb|EER03304.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ----- 81
+++++ L R+ V + DGR +G F DK N++L D E+R R S + +
Sbjct: 8 TKMQQWLNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGEEREVK 67
Query: 82 RCLGIILI 89
R LG++++
Sbjct: 68 RMLGLLIL 75
>gi|193704556|ref|XP_001950622.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Acyrthosiphon pisum]
Length = 209
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM-------EQRCLGIIL 88
R+ V ++D R F+G+F DK N+IL D E+R + + P E+R LG +L
Sbjct: 16 RVRVILQDSRMFIGTFKAFDKHMNLILADCEEFRRLKSKAKVPTIPAEPREEKRVLGFVL 75
Query: 89 I 89
+
Sbjct: 76 L 76
>gi|351700863|gb|EHB03782.1| Small nuclear ribonucleoprotein-associated protein B'
[Heterocephalus glaber]
Length = 126
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 15 SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT 74
+ G +K HI RM ++DG+ F+G+F DK N+IL D E+R +
Sbjct: 2 TVGKSSKMLQHIDY-------RMQCILQDGQIFIGTFKAFDKHMNLILCDCDEFRKIKPK 54
Query: 75 S---PSPMEQRCLGIILI 89
+ P E+R G++L+
Sbjct: 55 NAKQPEREEKRVWGLVLL 72
>gi|240279161|gb|EER42666.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
Length = 129
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP------- 78
+ + LL + + + D R F+G+F C D NIIL EYR P
Sbjct: 7 VKYLESLLGKTLRIHTTDARLFVGTFKCTDNDRNIILSTTHEYRYPTIPEHEPANPTRED 66
Query: 79 -----------MEQRCLGIILIPSSCRTSCHVD 100
M R +G++++P T +D
Sbjct: 67 DYTATGVVKADMTSRYIGLVVVPGHYITKIELD 99
>gi|294872496|ref|XP_002766300.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239867057|gb|EEQ99017.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 172
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ----- 81
+++++ L R+ V + DGR +G F DK N++L D E+R R S + +
Sbjct: 8 TKMQQWLNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGEEREVK 67
Query: 82 RCLGIILI 89
R LG++++
Sbjct: 68 RMLGLLIL 75
>gi|289742143|gb|ADD19819.1| small ribonucleoprotein particle protein B [Glossina morsitans
morsitans]
Length = 200
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNAKVPEREEKRVLGFVLL 72
>gi|226292603|gb|EEH48023.1| hypothetical protein PADG_04107 [Paracoccidioides brasiliensis
Pb18]
Length = 227
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 18/92 (19%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS----------- 75
+++ L+ RM V + DGR G DK N++L D E+R +R S
Sbjct: 7 GKMQNLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSTKTTQAPGSST 66
Query: 76 PSPM---EQRCLGIILIPSSCRTSCHVDCSID 104
PS + E+R LG+ ++ R + V CS+D
Sbjct: 67 PSLVEVEEKRTLGLTIV----RGTHVVSCSVD 94
>gi|195116465|ref|XP_002002775.1| GI11171 [Drosophila mojavensis]
gi|193913350|gb|EDW12217.1| GI11171 [Drosophila mojavensis]
Length = 112
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
+++K L R + + I DGR +G F+C D+ NI+L EY + E R LG +
Sbjct: 38 KLQKWLGRVLRIVITDGRVLVGFFNCTDRDANIVLSMCAEYLVEGQ------EPRLLGNV 91
Query: 88 LIPSSCRTSCHVD 100
++ S ++D
Sbjct: 92 MVAKKHIVSLNID 104
>gi|347826641|emb|CCD42338.1| hypothetical protein [Botryotinia fuckeliana]
Length = 188
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP 76
+N ++ L+ RM V + DGR +G DK N++L D E+R +R +P
Sbjct: 2 ANKQGKMAGLINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKRKAP 55
>gi|156105886|gb|ABU49308.1| LSM domain-containing 1 [Rattus norvegicus]
gi|156105888|gb|ABU49309.1| LSM domain-containing 1 [Rattus norvegicus]
gi|156105890|gb|ABU49310.1| LSM domain-containing 1 [Rattus norvegicus]
gi|156105892|gb|ABU49311.1| LSM domain-containing 1 [Rattus norvegicus]
gi|156105894|gb|ABU49312.1| LSM domain-containing 1 [Rattus norvegicus]
Length = 98
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 8 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 66
Query: 79 MEQRCLGIILIP 90
E R LG+ ++P
Sbjct: 67 GEPRVLGLAMVP 78
>gi|350606341|ref|NP_001234910.1| LSM domain-containing protein 1 [Pan troglodytes]
Length = 173
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 83 DSAAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKA-SDSFSA 141
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 142 GEPRVLGLAMVPG 154
>gi|154308568|ref|XP_001553620.1| hypothetical protein BC1G_08344 [Botryotinia fuckeliana B05.10]
Length = 240
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP 76
K++ RM V + DGR +G DK N++L D E+R +R +P
Sbjct: 7 KMINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKRKAP 52
>gi|169615595|ref|XP_001801213.1| hypothetical protein SNOG_10956 [Phaeosphaeria nodorum SN15]
gi|111060335|gb|EAT81455.1| hypothetical protein SNOG_10956 [Phaeosphaeria nodorum SN15]
Length = 128
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 13/73 (17%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST-----RRT-----SPS--- 77
+ + + + + DGR F G C DK NIIL A EYR+ R+ +PS
Sbjct: 33 QFIGKNLRIHASDGRVFGGQMKCTDKDQNIILALAHEYRAPSIEVIRKAVQDSGNPSTSV 92
Query: 78 PMEQRCLGIILIP 90
P R +G++++P
Sbjct: 93 PWNSRYVGLVVVP 105
>gi|294901095|ref|XP_002777232.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239884763|gb|EER09048.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 171
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ----- 81
+++++ L R+ V + DGR +G F DK N++L D E+R R S + +
Sbjct: 8 TKMQQWLNYRVRVTLHDGRIMIGQFMAFDKHMNLVLADTEEFRKVRSKGESGLGEEREVK 67
Query: 82 RCLGIILI 89
R LG++++
Sbjct: 68 RMLGLLIL 75
>gi|258577265|ref|XP_002542814.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903080|gb|EEP77481.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 99
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 26/98 (26%)
Query: 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP----- 78
N S + LL + + + D R F+G F C D NIIL + EYR P+P
Sbjct: 3 NAHSYLESLLNKTLRLHTSDTRLFVGIFKCTDNDRNIILANTYEYR-----YPTPAALNE 57
Query: 79 ----------------MEQRCLGIILIPSSCRTSCHVD 100
M R +G++++P T +D
Sbjct: 58 AIRQQGQGESEVVTADMTTRFIGLVVVPGRHITKIELD 95
>gi|195146742|ref|XP_002014343.1| GL19145 [Drosophila persimilis]
gi|194106296|gb|EDW28339.1| GL19145 [Drosophila persimilis]
Length = 205
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 12/82 (14%)
Query: 12 VESSAGSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS 70
V + G + K H++ RVR +L +D R F+G+F DK N+IL D E+R
Sbjct: 5 VNRTIGKNNKMIQHLNYRVRIVL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRK 56
Query: 71 TRRTS---PSPMEQRCLGIILI 89
R + P E+R LG +L+
Sbjct: 57 IRSKNSKVPEREEKRVLGFVLL 78
>gi|398403881|ref|XP_003853407.1| hypothetical protein MYCGRDRAFT_80455 [Zymoseptoria tritici
IPO323]
gi|339473289|gb|EGP88383.1| hypothetical protein MYCGRDRAFT_80455 [Zymoseptoria tritici
IPO323]
Length = 99
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 17/76 (22%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT-----------SPSP-- 78
LL R + + DGR F+G C D + NIIL EYR + S +P
Sbjct: 14 LLNRTLHLHTSDGRMFVGQMKCTDNERNIILAMTHEYRQPSESDIKLAAERHERSGAPGN 73
Query: 79 ----MEQRCLGIILIP 90
M++R +G++++P
Sbjct: 74 VKVDMKKRYVGLVVVP 89
>gi|358390982|gb|EHK40387.1| hypothetical protein TRIATDRAFT_42071 [Trichoderma atroviride IMI
206040]
Length = 102
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 13/75 (17%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS----------- 77
+ LL + + + DGR F G+F C D N++L + EYR + S
Sbjct: 10 ISSLLNQNLRIHTTDGRMFRGTFKCTDPDMNLVLGNTHEYRQPSKEEASAAAANTSGDSV 69
Query: 78 --PMEQRCLGIILIP 90
M R LG+I++P
Sbjct: 70 SLDMTSRYLGLIVVP 84
>gi|281485631|ref|NP_001099264.2| LSM domain containing 1 [Rattus norvegicus]
gi|149053044|gb|EDM04861.1| similar to hypothetical protein MGC14151 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 125
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|296215020|ref|XP_002753951.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
N-like [Callithrix jacchus]
Length = 250
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E++ LG++L+ S
Sbjct: 31 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKQVLGLVLLRGENLVSM 90
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 91 TVEGPPPKDTGIARV 105
>gi|109113155|ref|XP_001110847.1| PREDICTED: LSM domain-containing protein 1-like isoform 1 [Macaca
mulatta]
gi|296201341|ref|XP_002747989.1| PREDICTED: LSM domain-containing protein 1 isoform 2 [Callithrix
jacchus]
gi|397477498|ref|XP_003810107.1| PREDICTED: LSM domain-containing protein 1 [Pan paniscus]
gi|402898664|ref|XP_003912340.1| PREDICTED: LSM domain-containing protein 1 [Papio anubis]
gi|426384017|ref|XP_004058573.1| PREDICTED: LSM domain-containing protein 1 [Gorilla gorilla
gorilla]
Length = 125
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSAAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|389608761|dbj|BAM17992.1| small ribonucleoprotein particle protein SmB [Papilio xuthus]
Length = 188
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 17 GSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
G + K HI+ RVR +L +D R F+G+F DK N+IL D E+R + +
Sbjct: 4 GKNNKMQQHINYRVRVIL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN 55
Query: 76 PSPM---EQRCLGIILI 89
E+R LG +L+
Sbjct: 56 SKTADREEKRTLGFVLL 72
>gi|348560985|ref|XP_003466293.1| PREDICTED: LSM domain-containing protein 1-like [Cavia porcellus]
Length = 125
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|332251100|ref|XP_003274684.1| PREDICTED: LSM domain-containing protein 1 [Nomascus leucogenys]
Length = 125
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSAAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|389630628|ref|XP_003712967.1| hypothetical protein MGG_16920 [Magnaporthe oryzae 70-15]
gi|351645299|gb|EHA53160.1| hypothetical protein MGG_16920 [Magnaporthe oryzae 70-15]
gi|440475687|gb|ELQ44352.1| hypothetical protein OOU_Y34scaffold00090g17 [Magnaporthe oryzae
Y34]
gi|440479842|gb|ELQ60581.1| hypothetical protein OOW_P131scaffold01278g17 [Magnaporthe oryzae
P131]
Length = 205
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
SN ++ + RM V + DGR +G DK N++L D E+R +R P
Sbjct: 4 SNKQGKMAGYINYRMRVTLNDGRQMVGQMMAFDKHMNLVLADTEEFRKIKRKQAKPAAPG 63
Query: 80 ------------EQRCLGIILI 89
E+R LG+ ++
Sbjct: 64 ASGASSSTVESEEKRTLGLTIV 85
>gi|358417343|ref|XP_003583616.1| PREDICTED: LSM domain-containing protein 1 [Bos taurus]
gi|359076759|ref|XP_003587461.1| PREDICTED: LSM domain-containing protein 1 [Bos taurus]
Length = 126
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 36 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 94
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 95 GEPRVLGLAMVPG 107
>gi|301778219|ref|XP_002924513.1| PREDICTED: LSM domain-containing protein 1-like [Ailuropoda
melanoleuca]
Length = 180
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 90 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 148
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 149 GEPRVLGLAMVPG 161
>gi|355721040|gb|AES07133.1| Small nuclear ribonucleoprotein associated protein B [Mustela
putorius furo]
Length = 132
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
>gi|134076427|emb|CAK39655.1| unnamed protein product [Aspergillus niger]
Length = 275
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ 81
G+ + + L+ R + V D R F+G+F C D NIIL EYR PSP
Sbjct: 3 GNKAVQYLDSLIGRTLRVHATDTRIFVGTFKCTDAARNIILASTYEYR-----FPSPSTV 57
Query: 82 R 82
R
Sbjct: 58 R 58
>gi|58037525|ref|NP_084359.1| LSM domain-containing protein 1 [Mus musculus]
gi|81904908|sp|Q9D2U5.1|LSMD1_MOUSE RecName: Full=LSM domain-containing protein 1
gi|12858676|dbj|BAB31406.1| unnamed protein product [Mus musculus]
gi|38328385|gb|AAH62267.1| LSM domain containing 1 [Mus musculus]
gi|148678551|gb|EDL10498.1| LSM domain containing 1 [Mus musculus]
Length = 125
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPATRARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|5870129|gb|AAD54488.1| small nuclear ribonucleoprotein B [Homo sapiens]
Length = 234
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
>gi|452987629|gb|EME87384.1| hypothetical protein MYCFIDRAFT_29086 [Pseudocercospora fijiensis
CIRAD86]
Length = 109
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 17/76 (22%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEY---------RSTRRTSPS----- 77
++ R + + DGR F+G C D + NIIL EY R+T+R S
Sbjct: 15 MVNRTLHLHTSDGRMFVGQMKCTDNESNIILAMTYEYREPSEADIKRATQRHEQSGQVGN 74
Query: 78 ---PMEQRCLGIILIP 90
M++R +G++++P
Sbjct: 75 VKVDMKKRFVGLVVVP 90
>gi|57086383|ref|XP_536626.1| PREDICTED: LSM domain-containing protein 1 [Canis lupus familiaris]
Length = 125
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|345567932|gb|EGX50834.1| hypothetical protein AOL_s00054g920 [Arthrobotrys oligospora ATCC
24927]
Length = 215
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 9/88 (10%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR--TSPSPM----- 79
++ L+ RM V + D R G+ DK N++L D E+R T+R T +P
Sbjct: 6 GKMANLINYRMRVTLNDSRQLTGTLLAFDKHMNVVLADTEEFRRTKRKATKSNPNAPTTE 65
Query: 80 --EQRCLGIILIPSSCRTSCHVDCSIDE 105
E+R LG+I++ S V+ E
Sbjct: 66 VEEKRTLGLIILRGMTIVSLSVEGPPTE 93
>gi|5870130|gb|AAD54489.1| small nuclear ribonucleoprotein B' [Homo sapiens]
Length = 243
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
>gi|410979731|ref|XP_003996235.1| PREDICTED: LSM domain-containing protein 1 [Felis catus]
Length = 125
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|320585962|gb|EFW98641.1| lsm domain containing protein [Grosmannia clavigera kw1407]
Length = 125
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 17/86 (19%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPSP----------- 78
LL + ++V DGR F G F C D NI+L EYR + R+ +
Sbjct: 32 LLSKNLVVSTTDGRMFRGQFKCTDPDYNIVLAHTDEYRQPTARQIAEQARQAELAGNTGK 91
Query: 79 ----MEQRCLGIILIPSSCRTSCHVD 100
M R LG++++P + V+
Sbjct: 92 VAVNMVSRYLGLVVVPGNHVVKVEVE 117
>gi|291405113|ref|XP_002718823.1| PREDICTED: LSM domain containing 1-like [Oryctolagus cuniculus]
gi|355700158|gb|AES01359.1| MAK31-like protein [Mustela putorius furo]
gi|431894028|gb|ELK03834.1| LSM domain-containing protein 1 [Pteropus alecto]
Length = 125
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|198419524|ref|XP_002123396.1| PREDICTED: similar to small nuclear ribonucleoprotein
polypeptides B and B1 isoform 2 [Ciona intestinalis]
Length = 146
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 43 DGRFFLGSFHCIDKQGNIILQDAVEYRSTR--RTSPSPMEQRCLGIILI 89
DGR F+G+F DK N+IL D E+R R + + E+R LG++L+
Sbjct: 2 DGRVFIGTFKAFDKHMNLILVDCDEFRRVRPKKGATDREEKRTLGLVLL 50
>gi|395836474|ref|XP_003791179.1| PREDICTED: LSM domain-containing protein 1 [Otolemur garnettii]
Length = 125
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|426237552|ref|XP_004012723.1| PREDICTED: LSM domain-containing protein 1 [Ovis aries]
Length = 126
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 36 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 94
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 95 GEPRVLGLAMVPG 107
>gi|149724269|ref|XP_001504842.1| PREDICTED: LSM domain-containing protein 1-like isoform 1 [Equus
caballus]
Length = 125
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPATRARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|429327489|gb|AFZ79249.1| small nuclear ribonucleoprotein-associated protein B, putative
[Babesia equi]
Length = 153
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGI 86
+R+++ L + V +KDGR F+G+ DK N++L D E+R T+ ++ R LG
Sbjct: 6 TRMQQWLQYTVRVTVKDGRKFVGTLIAFDKHMNLVLADCEEFRMTKGKEGKEIK-RTLGF 64
Query: 87 ILI 89
IL+
Sbjct: 65 ILL 67
>gi|353237612|emb|CCA69581.1| hypothetical protein PIIN_03520 [Piriformospora indica DSM 11827]
Length = 98
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 85
++ + L+ +R+L+ ++DGR +G+ D++ NI+L D VE R ++ + + LG
Sbjct: 1 MATLHTLVDKRVLLVMQDGRVIMGNLVGWDQRSNIVLADCVERRFSQESGAT---DSALG 57
Query: 86 IILIPSS--CRTSCHVDCSIDEQLSL--LKVD 113
+ ++ C VD +I+E S +KVD
Sbjct: 58 VYMVKGDQICLVG-EVDAAIEEATSWSEIKVD 88
>gi|391329361|ref|XP_003739143.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Metaseiulus occidentalis]
Length = 209
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPSPME 80
IS+ K+L RM V ++D R F+G+F DK N+IL + E+R ++ E
Sbjct: 3 ISKNNKMLQHINYRMRVTLQDSRSFIGTFKAFDKHMNLILTECEEFRKIKAKQGGQEREE 62
Query: 81 QRCLGIILI 89
+R LG++L+
Sbjct: 63 KRVLGLVLL 71
>gi|86438323|gb|AAI12635.1| SNRPB protein [Bos taurus]
Length = 239
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|195118784|ref|XP_002003916.1| GI18165 [Drosophila mojavensis]
gi|195384904|ref|XP_002051152.1| GJ14598 [Drosophila virilis]
gi|193914491|gb|EDW13358.1| GI18165 [Drosophila mojavensis]
gi|194147609|gb|EDW63307.1| GJ14598 [Drosophila virilis]
Length = 198
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 72
>gi|322708628|gb|EFZ00205.1| LSM domain containing protein [Metarhizium anisopliae ARSEF 23]
Length = 205
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM----------- 79
K++ RM V + DGR G DK N++L D E+R +R + P
Sbjct: 7 KMINWRMRVILNDGRAMTGQMLAFDKHMNLVLADTEEFRRVKRKASKPSAPGSSSQVVET 66
Query: 80 -EQRCLGIILI 89
E+R LG+ ++
Sbjct: 67 EEKRTLGLTIV 77
>gi|297271841|ref|XP_002800325.1| PREDICTED: LSM domain-containing protein 1-like isoform 2 [Macaca
mulatta]
Length = 165
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 75 DSAAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 133
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 134 GEPRVLGLAMVPG 146
>gi|281352211|gb|EFB27795.1| hypothetical protein PANDA_013884 [Ailuropoda melanoleuca]
Length = 170
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 80 DSPAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 138
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 139 GEPRVLGLAMVPG 151
>gi|383852431|ref|XP_003701731.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Megachile rotundata]
Length = 219
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 12/80 (15%)
Query: 14 SSAGSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
S+ G + K HI+ R+R +L +D R F+G+F DK N+IL D E+R +
Sbjct: 3 STIGKNNKMLQHINYRIRIIL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRKIK 54
Query: 73 RTS---PSPMEQRCLGIILI 89
+ P ++R LG +L+
Sbjct: 55 PKNTKQPEREDKRVLGFVLL 74
>gi|417397681|gb|JAA45874.1| Putative u1 snrnp component [Desmodus rotundus]
Length = 240
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|380791233|gb|AFE67492.1| small nuclear ribonucleoprotein-associated protein N, partial
[Macaca mulatta]
Length = 228
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|12643865|sp|Q9TU67.1|RSMB_ERIEU RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|5870111|gb|AAD54481.1|AF134826_1 small nuclear ribonucleoprotein B' [Erinaceus europaeus]
Length = 240
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|38150007|ref|NP_937859.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Homo sapiens]
gi|73991487|ref|XP_861671.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 4 [Canis lupus familiaris]
gi|114680541|ref|XP_525398.2| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Pan troglodytes]
gi|149733145|ref|XP_001497533.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like isoform 2 [Equus caballus]
gi|297706683|ref|XP_002830161.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Pongo abelii]
gi|332248649|ref|XP_003273477.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Nomascus leucogenys]
gi|348581828|ref|XP_003476679.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like [Cavia porcellus]
gi|395829987|ref|XP_003788118.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Otolemur garnettii]
gi|397501309|ref|XP_003821332.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Pan paniscus]
gi|402883007|ref|XP_003905022.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Papio anubis]
gi|403300779|ref|XP_003941094.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Saimiri boliviensis boliviensis]
gi|410954251|ref|XP_003983779.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Felis catus]
gi|426390714|ref|XP_004061744.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Gorilla gorilla gorilla]
gi|426390722|ref|XP_004061748.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 6 [Gorilla gorilla gorilla]
gi|441639076|ref|XP_004090181.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Nomascus leucogenys]
gi|134037|sp|P14678.2|RSMB_HUMAN RecName: Full=Small nuclear ribonucleoprotein-associated proteins B
and B'; Short=snRNP-B; AltName: Full=Sm protein B/B';
Short=Sm-B/B'; Short=SmB/B'
gi|6018504|emb|CAB57868.1| snRNP B' protein [Homo sapiens]
gi|48146055|emb|CAG33250.1| SNRPB [Homo sapiens]
gi|119631001|gb|EAX10596.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_a [Homo sapiens]
gi|383408773|gb|AFH27600.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Macaca mulatta]
gi|410215074|gb|JAA04756.1| small nuclear ribonucleoprotein polypeptide N [Pan troglodytes]
gi|410265024|gb|JAA20478.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
gi|410303130|gb|JAA30165.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
Length = 240
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|432111113|gb|ELK34499.1| Small nuclear ribonucleoprotein-associated protein B' [Myotis
davidii]
Length = 240
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|311274576|ref|XP_003134384.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Sus scrofa]
Length = 143
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|291388823|ref|XP_002710954.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B-like
[Oryctolagus cuniculus]
Length = 196
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|198475808|ref|XP_001357165.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
gi|198137969|gb|EAL34232.2| GA18820 [Drosophila pseudoobscura pseudoobscura]
Length = 191
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 5 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 64
>gi|195339821|ref|XP_002036515.1| GM11667 [Drosophila sechellia]
gi|195578207|ref|XP_002078957.1| GD22258 [Drosophila simulans]
gi|194130395|gb|EDW52438.1| GM11667 [Drosophila sechellia]
gi|194190966|gb|EDX04542.1| GD22258 [Drosophila simulans]
Length = 199
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 72
>gi|195051180|ref|XP_001993048.1| GH13302 [Drosophila grimshawi]
gi|193900107|gb|EDV98973.1| GH13302 [Drosophila grimshawi]
Length = 198
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 72
>gi|77020260|ref|NP_001029144.1| small nuclear ribonucleoprotein-associated protein B' isoform 2
[Monodelphis domestica]
gi|10720265|sp|Q9TU66.1|RSMB_MONDO RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|5870113|gb|AAD54482.1|AF134827_1 small nuclear ribonucleoprotein B' [Monodelphis domestica]
Length = 240
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
>gi|351701359|gb|EHB04278.1| Small nuclear ribonucleoprotein-associated protein B, partial
[Heterocephalus glaber]
Length = 229
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|119631003|gb|EAX10598.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_c [Homo sapiens]
gi|194375339|dbj|BAG62782.1| unnamed protein product [Homo sapiens]
Length = 234
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|337461|gb|AAA36579.1| small nuclear ribonucleoprotein particle (SmB'), partial [Homo
sapiens]
Length = 233
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 9 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 68
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 69 NLVSMTVEGPPPKDTGIARV 88
>gi|426241118|ref|XP_004014439.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
isoform 2 [Ovis aries]
Length = 231
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|194761826|ref|XP_001963124.1| GF14098 [Drosophila ananassae]
gi|190616821|gb|EDV32345.1| GF14098 [Drosophila ananassae]
Length = 199
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 72
>gi|77736407|ref|NP_001029903.1| small nuclear ribonucleoprotein-associated protein B' [Bos taurus]
gi|426241116|ref|XP_004014438.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
isoform 1 [Ovis aries]
gi|75056662|sp|Q58DW4.1|RSMB_BOVIN RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|61552980|gb|AAX46330.1| small nuclear ribonucleoprotein polypeptide B/B' isoform B' [Bos
taurus]
gi|296481179|tpg|DAA23294.1| TPA: small nuclear ribonucleoprotein-associated protein B' [Bos
taurus]
Length = 240
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|417395957|gb|JAA45012.1| Putative u1 snrnp component [Desmodus rotundus]
Length = 125
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPAARARRQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|395506057|ref|XP_003757352.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Sarcophilus harrisii]
Length = 240
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|194859949|ref|XP_001969485.1| GG23931 [Drosophila erecta]
gi|195473671|ref|XP_002089116.1| SmB [Drosophila yakuba]
gi|38048415|gb|AAR10110.1| similar to Drosophila melanogaster SmB, partial [Drosophila
yakuba]
gi|190661352|gb|EDV58544.1| GG23931 [Drosophila erecta]
gi|194175217|gb|EDW88828.1| SmB [Drosophila yakuba]
Length = 199
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 72
>gi|148298654|ref|NP_001091757.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
gi|87248407|gb|ABD36256.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
Length = 187
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 12/77 (15%)
Query: 17 GSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
G + K HI+ RVR +L +D R F+G+F DK N+IL D E+R + +
Sbjct: 4 GKNNKMQQHINYRVRVIL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKN 55
Query: 76 PSPM---EQRCLGIILI 89
E+R LG +L+
Sbjct: 56 SKTADREEKRTLGFVLL 72
>gi|320544917|ref|NP_001188780.1| small ribonucleoprotein particle protein SmB [Drosophila
melanogaster]
gi|10720262|sp|Q05856.1|RSMB_DROME RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|290272|gb|AAA28858.1| ribonucleoprotein [Drosophila melanogaster]
gi|16769000|gb|AAL28719.1| LD14049p [Drosophila melanogaster]
gi|220952928|gb|ACL89007.1| SmB-PA [synthetic construct]
gi|318068414|gb|ADV37030.1| small ribonucleoprotein particle protein SmB [Drosophila
melanogaster]
Length = 199
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 72
>gi|344279453|ref|XP_003411502.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Loxodonta africana]
Length = 341
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 30 RKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGI 86
R+L R +L +DGR F+G+F DK N+IL D E+R + + E+R LG+
Sbjct: 114 RRLHFRXIL---QDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGL 170
Query: 87 ILIPSSCRTSCHVDCSIDEQLSLLKV 112
+L+ S V+ + + +V
Sbjct: 171 VLLRGENLVSMTVEGPPPKDTGIARV 196
>gi|343960905|dbj|BAK62042.1| zinc finger protein 343 [Pan troglodytes]
Length = 319
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 8 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 64
>gi|226483589|emb|CAX74095.1| hypotheticial protein [Schistosoma japonicum]
Length = 82
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)
Query: 10 TLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQ 63
T E S + + N + R+L + ++V + DGR F+GSF C D GNI+++
Sbjct: 2 TFNEPSFNNKDEAKNFL---RRLCGQEIIVHVSDGRRFIGSFWCTDNVGNIVME 52
>gi|242019279|ref|XP_002430089.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
gi|212515170|gb|EEB17351.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Pediculus humanus corporis]
Length = 187
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
R+ + ++D R F+G+F DK N+IL D E+R T+ + E+R LG +L+
Sbjct: 8 RIRITLQDSRTFIGTFKAFDKHMNLILGDCEEFRRTKPKNSKEAERDEKRSLGFVLL 64
>gi|53690154|gb|AAU89981.1| small nuclear ribonucleoprotein polypeptide B [Homo sapiens]
Length = 231
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|425769567|gb|EKV08058.1| hypothetical protein PDIP_70210 [Penicillium digitatum Pd1]
gi|425771204|gb|EKV09654.1| hypothetical protein PDIG_60780 [Penicillium digitatum PHI26]
Length = 102
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 21/86 (24%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP------- 78
+ + LL R + + D R F+G F C D NIIL ++ EYR +++
Sbjct: 7 VQYLEGLLGRTLRIHTTDTRMFVGLFKCTDADRNIILANSFEYRMPTKSAVQAAADEKQW 66
Query: 79 --------------MEQRCLGIILIP 90
M R +G+I+IP
Sbjct: 67 GEGSETKSTTIKVNMTHRLIGLIVIP 92
>gi|170105048|ref|XP_001883737.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164641372|gb|EDR05633.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 103
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 7/76 (9%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR-------RTSPSPMEQRCL 84
L+ R+ V I DGR G D+ N++L D E+R R T+P +R L
Sbjct: 4 LINWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTL 63
Query: 85 GIILIPSSCRTSCHVD 100
G++++ S V+
Sbjct: 64 GLVILRGETVVSLSVE 79
>gi|6678053|ref|NP_033251.1| small nuclear ribonucleoprotein-associated protein B [Mus musculus]
gi|134038|sp|P27048.1|RSMB_MOUSE RecName: Full=Small nuclear ribonucleoprotein-associated protein B;
Short=snRNP-B; Short=snRPB; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|200992|gb|AAA40119.1| Sm-B protein [Mus musculus]
gi|74226859|dbj|BAE27074.1| unnamed protein product [Mus musculus]
gi|146327314|gb|AAI41605.1| Small nuclear ribonucleoprotein B [synthetic construct]
gi|147898161|gb|AAI40305.1| Small nuclear ribonucleoprotein B [synthetic construct]
gi|148696304|gb|EDL28251.1| mCG9909 [Mus musculus]
Length = 231
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|4507125|ref|NP_003082.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B [Homo sapiens]
gi|189339196|ref|NP_599185.1| small nuclear ribonucleoprotein-associated protein B [Rattus
norvegicus]
gi|383872951|ref|NP_001244645.1| small nuclear ribonucleoprotein polypeptides B and B1 [Macaca
mulatta]
gi|73991485|ref|XP_542930.2| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Canis lupus familiaris]
gi|114680543|ref|XP_001156133.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Pan troglodytes]
gi|149733143|ref|XP_001497520.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B'-like isoform 1 [Equus caballus]
gi|297706685|ref|XP_002830162.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Pongo abelii]
gi|301766854|ref|XP_002918830.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Ailuropoda melanoleuca]
gi|332248647|ref|XP_003273476.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Nomascus leucogenys]
gi|332248651|ref|XP_003273478.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Nomascus leucogenys]
gi|332857915|ref|XP_003316862.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pan troglodytes]
gi|395752104|ref|XP_003779360.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pongo abelii]
gi|395752106|ref|XP_003779361.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pongo abelii]
gi|395752108|ref|XP_003779362.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Pongo abelii]
gi|395829985|ref|XP_003788117.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Otolemur garnettii]
gi|397501307|ref|XP_003821331.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Pan paniscus]
gi|397501311|ref|XP_003821333.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Pan paniscus]
gi|397501313|ref|XP_003821334.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 4 [Pan paniscus]
gi|402883005|ref|XP_003905021.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Papio anubis]
gi|402883009|ref|XP_003905023.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Papio anubis]
gi|403300777|ref|XP_003941093.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Saimiri boliviensis boliviensis]
gi|403300781|ref|XP_003941095.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Saimiri boliviensis boliviensis]
gi|410954253|ref|XP_003983780.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 2 [Felis catus]
gi|426390712|ref|XP_004061743.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 1 [Gorilla gorilla gorilla]
gi|426390716|ref|XP_004061745.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 3 [Gorilla gorilla gorilla]
gi|426390718|ref|XP_004061746.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 4 [Gorilla gorilla gorilla]
gi|426390720|ref|XP_004061747.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' isoform 5 [Gorilla gorilla gorilla]
gi|441639072|ref|XP_004090180.1| PREDICTED: small nuclear ribonucleoprotein-associated proteins B
and B' [Nomascus leucogenys]
gi|315583601|pdb|3PGW|B Chain B, Crystal Structure Of Human U1 Snrnp
gi|315583610|pdb|3PGW|Q Chain Q, Crystal Structure Of Human U1 Snrnp
gi|29410|emb|CAA33902.1| unnamed protein product [Homo sapiens]
gi|6018503|emb|CAB57867.1| snRNP B protein [Homo sapiens]
gi|51593415|gb|AAH80516.1| Small nuclear ribonucleoprotein polypeptides B and B1 [Homo
sapiens]
gi|119631002|gb|EAX10597.1| small nuclear ribonucleoprotein polypeptides B and B1, isoform
CRA_b [Homo sapiens]
gi|149023280|gb|EDL80174.1| rCG26118, isoform CRA_a [Rattus norvegicus]
gi|165971421|gb|AAI58687.1| Snrpb protein [Rattus norvegicus]
gi|189069168|dbj|BAG35506.1| unnamed protein product [Homo sapiens]
gi|208967442|dbj|BAG73735.1| small nuclear ribonucleoprotein polypeptides B and B1 [synthetic
construct]
gi|312151034|gb|ADQ32029.1| small nuclear ribonucleoprotein polypeptides B and B1 [synthetic
construct]
gi|380785189|gb|AFE64470.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B [Macaca mulatta]
gi|383420993|gb|AFH33710.1| small nuclear ribonucleoprotein-associated proteins B and B'
isoform B' [Macaca mulatta]
gi|410215070|gb|JAA04754.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
gi|410265026|gb|JAA20479.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
gi|410303132|gb|JAA30166.1| small nuclear ribonucleoprotein polypeptides B and B1 [Pan
troglodytes]
Length = 231
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|156540632|ref|XP_001599264.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B
[Nasonia vitripennis]
Length = 217
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 17 GSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
G + K HI+ RVR +L +D R F+G+F DK N+IL D E+R + +
Sbjct: 4 GKNNKMLQHINYRVRIIL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKN 55
Query: 76 ---PSPMEQRCLGIILI 89
P E+R LG +L+
Sbjct: 56 TKQPEREEKRVLGFVLL 72
>gi|337459|gb|AAA36578.1| small nuclear ribonucleoprotein particle (SmB), partial [Homo
sapiens]
Length = 224
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 9 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 68
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 69 NLVSMTVEGPPPKDTGIARV 88
>gi|344236342|gb|EGV92445.1| Small nuclear ribonucleoprotein-associated protein B [Cricetulus
griseus]
Length = 223
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 8 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 67
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 68 NLVSMTVEGPPPKDTGIARV 87
>gi|74732854|sp|Q9BRA0.1|LSMD1_HUMAN RecName: Full=LSM domain-containing protein 1; AltName:
Full=Phosphonoformate immuno-associated protein 2
gi|13623585|gb|AAH06407.1| LSMD1 protein [Homo sapiens]
gi|30353999|gb|AAH51846.1| LSMD1 protein [Homo sapiens]
gi|33329087|gb|AAQ09944.1| phosphonoformate immuno-associated protein 2 [Homo sapiens]
gi|37805285|gb|AAH59944.1| LSMD1 protein [Homo sapiens]
gi|119610529|gb|EAW90123.1| LSM domain containing 1 [Homo sapiens]
Length = 125
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|325190755|emb|CCA25247.1| small nuclear ribonucleoproteinassociated protein pu [Albugo
laibachii Nc14]
Length = 218
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR-----RTSPSPMEQ 81
S++ + RM V ++D R +G F DK NI+L D E+R+ + S +E+
Sbjct: 7 SKMLNYINYRMKVTLQDSRALVGYFMAFDKHMNIVLGDCEEFRTLKSKLKTNVSEERVEK 66
Query: 82 RCLGIILIPSSCRTSCHVD 100
R LG++L+ S VD
Sbjct: 67 RYLGLVLLRGESVVSLTVD 85
>gi|403160315|ref|XP_003890597.1| hypothetical protein PGTG_20884 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169505|gb|EHS63902.1| hypothetical protein PGTG_20884 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 149
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 9 ETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEY 68
E+ + + S + S HIS+ +R+LV +DGR G D+ NIIL D+VE
Sbjct: 43 ESWLVYTIPSGAQTSIHISQ-----DKRVLVITQDGRTITGELKGFDQTTNIILSDSVER 97
Query: 69 RSTRRTSPSPMEQRCLGIILI 89
+S PME+ LG+ ++
Sbjct: 98 ---VYSSDEPMEEVPLGLYIV 115
>gi|311268325|ref|XP_003131997.1| PREDICTED: LSM domain-containing protein 1-like [Sus scrofa]
gi|311268343|ref|XP_003132008.1| PREDICTED: LSM domain-containing protein 1-like [Sus scrofa]
Length = 125
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPSARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|303289090|ref|XP_003063833.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454901|gb|EEH52206.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 204
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+SR K+L RM V I DGR +G F D+ NI+L DA E+R
Sbjct: 3 VSRTSKMLAYINYRMRVTIVDGRQIVGRFMAFDRHMNIVLGDAEEFR 49
>gi|297260889|ref|XP_002798382.1| PREDICTED: hypothetical protein LOC100428923 [Macaca mulatta]
Length = 295
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQR 82
ISR+++ + RM +++GR F G+F DK N+IL D E R + + P E+
Sbjct: 119 ISRLQQHIDSRMKCILQEGRIFFGAFKAFDKHVNLILCDCDELRKIKPKNVKQPELKEKH 178
Query: 83 CLGIILI 89
G++L+
Sbjct: 179 FWGLVLL 185
>gi|395533471|ref|XP_003768783.1| PREDICTED: LSM domain-containing protein 1 [Sarcophilus harrisii]
Length = 125
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
+ LL + M + + DGR +G F C D+ N+IL A E+ S S E R LG+ +
Sbjct: 46 LEGLLNKNMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-TDSFSAGEPRVLGLAM 104
Query: 89 IPSSCRTSCHV 99
+P S V
Sbjct: 105 VPGHHIVSVEV 115
>gi|347971925|ref|XP_003436817.1| AGAP013238-PA [Anopheles gambiae str. PEST]
gi|333469092|gb|EGK97175.1| AGAP013238-PA [Anopheles gambiae str. PEST]
Length = 77
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
+R L R + + DGR G F C D N++LQ E+ + E+R LG+++
Sbjct: 6 LRSWLNRLFRIKMTDGRILSGYFVCTDADANVVLQATSEF------TEIGGEERVLGLVM 59
Query: 89 IPS 91
IP
Sbjct: 60 IPG 62
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPME-QRCLGII 87
++K + R+ V ++D R +G+ DK N++L D EYRS ++ E +R LG I
Sbjct: 1 MQKYINYRVRVTVQDDRMLVGNLMAFDKHMNVVLSDCQEYRSIKKKGEDLKEVKRSLGFI 60
Query: 88 LI 89
++
Sbjct: 61 VL 62
>gi|40254988|ref|NP_115732.2| LSM domain-containing protein 1 precursor [Homo sapiens]
gi|21707073|gb|AAH33861.1| LSM domain containing 1 [Homo sapiens]
gi|123993229|gb|ABM84216.1| LSM domain containing 1 [synthetic construct]
gi|123993287|gb|ABM84245.1| LSM domain containing 1 [synthetic construct]
gi|124000249|gb|ABM87633.1| LSM domain containing 1 [synthetic construct]
Length = 173
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 83 DSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 141
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 142 GEPRVLGLAMVPG 154
>gi|395331807|gb|EJF64187.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 181
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 20 TKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR------R 73
+KG +S L+ R+ V I DGR F+G D+ N++L + E+R R
Sbjct: 6 SKGGKMLS----LINWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKPGE 61
Query: 74 TSPSPMEQ--RCLGIILIPSSCRTSCHVD 100
T PM++ R LG++++ S V+
Sbjct: 62 TEAGPMQEMKRTLGLVILRGETVVSLSVE 90
>gi|195434134|ref|XP_002065058.1| GK14876 [Drosophila willistoni]
gi|194161143|gb|EDW76044.1| GK14876 [Drosophila willistoni]
Length = 191
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 5 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 64
>gi|403274992|ref|XP_003929244.1| PREDICTED: LSM domain-containing protein 1 [Saimiri boliviensis
boliviensis]
Length = 125
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSAAARARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSV 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|340508672|gb|EGR34332.1| hypothetical protein IMG5_016230 [Ichthyophthirius multifiliis]
Length = 1010
Score = 38.9 bits (89), Expect = 0.45, Method: Composition-based stats.
Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 4/96 (4%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---STRRT 74
+DT+ S S+ + + R+ V I DGR +G+F DK N+++ + E+R ++
Sbjct: 828 TDTRQSRR-SKFIQWIDYRVRVTILDGRMLVGTFLAFDKHLNLVISETEEFRPIKPKKKG 886
Query: 75 SPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLL 110
P +R LG+++I S + + ++Q++++
Sbjct: 887 DPERQTKRILGLVIIRGENIISINAEAPPNQQVNIV 922
>gi|75057373|sp|Q9N1Q0.1|RSMB_MACEU RecName: Full=Small nuclear ribonucleoprotein-associated protein
B'; Short=snRNP-B'; Short=snRPB'; AltName: Full=Sm
protein B'; Short=Sm-B'; Short=SmB'
gi|7208221|gb|AAF40115.1|AF176323_1 small nuclear ribonucleoprotein B' [Macropus eugenii]
Length = 240
Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|225734041|pdb|3CW1|A Chain A, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734050|pdb|3CW1|H Chain H, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734059|pdb|3CW1|I Chain I, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734068|pdb|3CW1|J Chain J, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 174
Score = 38.9 bits (89), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>gi|268565093|ref|XP_002639331.1| Hypothetical protein CBG03909 [Caenorhabditis briggsae]
Length = 102
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 11 LVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS 70
L+ES A + S +V++ + +R V + DGRF G+ DK N++ A E +
Sbjct: 9 LIESQATEPAEKSEVHKKVQEYIGKRYEVQLTDGRFIRGTMIATDKDANMVFNKADERWT 68
Query: 71 TRRTSPSPMEQRCLGIILI 89
+ P R LG +I
Sbjct: 69 VKADRPV----RFLGQAMI 83
>gi|121710344|ref|XP_001272788.1| LSM domain protein [Aspergillus clavatus NRRL 1]
gi|119400938|gb|EAW11362.1| LSM domain protein [Aspergillus clavatus NRRL 1]
Length = 119
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 23/83 (27%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---------------------- 69
L+ + + V D R F+G+F C D + NIIL + EYR
Sbjct: 13 LIGQTLRVHATDTRMFVGTFKCTDAERNIILGNTYEYRFPSSSAIKDAAAKTNDGEEVVA 72
Query: 70 -STRRTSPSPMEQRCLGIILIPS 91
RR M R +G++++PS
Sbjct: 73 PPERRNIKLDMTSRFIGLVVVPS 95
>gi|392565532|gb|EIW58709.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 178
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 12/78 (15%)
Query: 20 TKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR------R 73
+KG +S L+ R+ V I DGR F+G D+ N++L + E+R R
Sbjct: 6 SKGGKMLS----LINWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKAGE 61
Query: 74 TSPSPMEQ--RCLGIILI 89
T PM++ R LG++++
Sbjct: 62 TEAGPMQEMKRTLGLVIL 79
>gi|196004222|ref|XP_002111978.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190585877|gb|EDV25945.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 247
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++D R F+G+ DK NI+L D E+R + S E+R LG++++
Sbjct: 16 RMRATLQDTRMFIGTLLAYDKHMNIVLGDCDEFRKIKSKSSKNQEREEKRSLGLVILRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLK 111
S V+ ++SLL+
Sbjct: 76 NLVSLTVEGPPPAEVSLLE 94
>gi|126309134|ref|XP_001364629.1| PREDICTED: LSM domain-containing protein 1-like [Monodelphis
domestica]
Length = 126
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPS 91
LL + M + + DGR +G F C D+ N+IL A E+ S S E R LG+ ++P
Sbjct: 49 LLNKNMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-TDSFSAGEPRVLGLAMVPG 107
>gi|190247|gb|AAA60151.1| snRNP polypeptide B [Homo sapiens]
Length = 285
Score = 38.5 bits (88), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
>gi|444313583|ref|XP_004177449.1| hypothetical protein TBLA_0A01310 [Tetrapisispora blattae CBS 6284]
gi|387510488|emb|CCH57930.1| hypothetical protein TBLA_0A01310 [Tetrapisispora blattae CBS 6284]
Length = 103
Score = 38.5 bits (88), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ-------RCLGIIL 88
R+ V I R +G+ +D Q N++L D VE+ R ++ S ++ R LG++
Sbjct: 13 RLHVTIDKDRHIVGTLVALDSQVNLLLNDVVEFSVIRPSTESDSDKHEAQQYTRKLGLVS 72
Query: 89 IPSSCRTSCHVDCSIDEQLSLL 110
IP R+S +V +DE L L
Sbjct: 73 IP---RSSINVLRIVDEDLEAL 91
>gi|393911566|gb|EFO26903.2| hypothetical protein LOAG_01578 [Loa loa]
Length = 168
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP-------MEQRCLG 85
L R+M V + D R F+G F DK NI+L D E RR P P E+R LG
Sbjct: 13 LNRKMKVVLLDSRTFVGYFKAFDKHMNILLCDCEEL---RRIKPKPGKKIAEGEEKRTLG 69
Query: 86 IILI 89
++L+
Sbjct: 70 LVLL 73
>gi|170593211|ref|XP_001901358.1| small nuclear ribonucleoprotein-associated protein homolog
F9F13.90 - Arabidopsis thaliana [Brugia malayi]
gi|158591425|gb|EDP30038.1| small nuclear ribonucleoprotein-associated protein homolog
F9F13.90 - Arabidopsis thaliana, putative [Brugia
malayi]
Length = 168
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP-------MEQRCLG 85
L R+M V + D R F+G F DK NI+L D E RR P P E+R LG
Sbjct: 13 LNRKMKVVLLDSRTFVGYFKAFDKHMNILLCDCEEL---RRIKPKPGKKIAEGEEKRTLG 69
Query: 86 IILI 89
++L+
Sbjct: 70 LVLL 73
>gi|403215079|emb|CCK69579.1| hypothetical protein KNAG_0C04780 [Kazachstania naganishii CBS
8797]
Length = 93
Score = 38.5 bits (88), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
+R + + V +KDGR G F ID Q N++L D V R +++ + + R LG++
Sbjct: 6 LRDYIGNTLYVTLKDGRILNGEFMAIDAQCNLLL-DRV--REQSKSATAEVSSRLLGLVS 62
Query: 89 IPSSCRTSCHV 99
+PS V
Sbjct: 63 VPSDTVEKVEV 73
>gi|351701584|gb|EHB04503.1| LSM domain-containing protein 1 [Heterocephalus glaber]
Length = 125
Score = 38.5 bits (88), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPAPRARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-TDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>gi|67623475|ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|54659204|gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 38.5 bits (88), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 34/61 (55%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIIL 88
++K + R+ V ++D R +G+ D+ N++L D EYR ++ +R LG+I+
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIM 60
Query: 89 I 89
+
Sbjct: 61 L 61
>gi|340712457|ref|XP_003394776.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus terrestris]
gi|340712459|ref|XP_003394777.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus terrestris]
gi|350399783|ref|XP_003485637.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 1 [Bombus impatiens]
gi|350399786|ref|XP_003485638.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like isoform 2 [Bombus impatiens]
Length = 217
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 17 GSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
G + K HI+ RVR +L +D R F+G+F DK N+IL D E+R + +
Sbjct: 4 GKNNKMLQHINYRVRIIL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKN 55
Query: 76 ---PSPMEQRCLGIILI 89
P ++R LG +L+
Sbjct: 56 TKQPEREDKRVLGFVLL 72
>gi|336272660|ref|XP_003351086.1| hypothetical protein SMAC_05965 [Sordaria macrospora k-hell]
Length = 189
Score = 38.1 bits (87), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT 74
+N ++ + RM V + DGR G DK N++L DA E+R +RT
Sbjct: 4 TNKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADAEEFRQEKRT 55
>gi|367019576|ref|XP_003659073.1| hypothetical protein MYCTH_2295675 [Myceliophthora thermophila
ATCC 42464]
gi|347006340|gb|AEO53828.1| hypothetical protein MYCTH_2295675 [Myceliophthora thermophila
ATCC 42464]
Length = 214
Score = 38.1 bits (87), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
+N ++ + RM V + DGR G DK N++L D E+R T+R P
Sbjct: 4 TNKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRTKRKQNKPAAPG 63
Query: 80 ------------EQRCLGIILI 89
E+R LG+ ++
Sbjct: 64 SSSTAAAIIEQEEKRTLGLTIV 85
>gi|307188198|gb|EFN73030.1| Small nuclear ribonucleoprotein-associated protein B [Camponotus
floridanus]
Length = 209
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
++D R F+G+F DK N+IL D E+R + + P E+R LG +L+
Sbjct: 13 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLL 64
>gi|225682296|gb|EEH20580.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 129
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 21 KGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+ + + + LL + + + D R F+G+F C D NIIL EYR
Sbjct: 2 ENAQAVQYLESLLGKTLRIHTSDTRLFVGTFKCTDNDRNIILSTTHEYR 50
>gi|50293209|ref|XP_449016.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528329|emb|CAG61986.1| unnamed protein product [Candida glabrata]
Length = 158
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILI 89
R++ V ++DG+ F G D+ N+ILQD VE + E R GI +I
Sbjct: 38 RKIFVLLRDGKLFFGVLRTFDQYANLILQDCVERIYVQENGEYAEEDR--GIFMI 90
>gi|156838765|ref|XP_001643082.1| hypothetical protein Kpol_423p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156113674|gb|EDO15224.1| hypothetical protein Kpol_423p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 175
Score = 38.1 bits (87), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 13/78 (16%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR-----------STRR 73
H S++ L+ R+ V DGR ++G DK N++L D VE R ST
Sbjct: 10 HDSKLGNLINYRIRVITADGRVYIGQLMAYDKHMNVVLGDCVEERIPKTQLQKLKESTNN 69
Query: 74 TSPS--PMEQRCLGIILI 89
S S +E+R LG+ ++
Sbjct: 70 VSASDIKVEKRVLGLTIL 87
>gi|402581979|gb|EJW75926.1| hypothetical protein WUBG_13167 [Wuchereria bancrofti]
Length = 160
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 10/64 (15%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP-------MEQRCLG 85
L R+M V + D R F+G F DK NI+L D E RR P P E+R LG
Sbjct: 5 LNRKMKVVLLDSRTFVGYFKAFDKHMNILLCDCEEL---RRIKPKPGKKITEGEEKRTLG 61
Query: 86 IILI 89
++L+
Sbjct: 62 LVLL 65
>gi|405956668|gb|EKC23115.1| LSM domain-containing protein 1 [Crassostrea gigas]
Length = 73
Score = 38.1 bits (87), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 37 MLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTS 96
M V + DGR +G F C D++ N+IL EY + E R LG+ +IP S
Sbjct: 1 MKVKMTDGRTLIGVFLCTDRERNVILGGCEEYLKPLEGNEKE-EPRILGLAMIPGHHIVS 59
Query: 97 CHVDCS 102
+D S
Sbjct: 60 ISIDKS 65
>gi|301093096|ref|XP_002997397.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
gi|262110795|gb|EEY68847.1| small nuclear ribonucleoprotein-associated protein, putative
[Phytophthora infestans T30-4]
Length = 216
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP-----MEQ 81
S++ + RM V ++D R +G F DK N++L D E+R+ + S +E+
Sbjct: 7 SKMLNYINYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTLKAKVKSAVSEERVEK 66
Query: 82 RCLGIILI 89
R LG++L+
Sbjct: 67 RHLGLVLL 74
>gi|242043028|ref|XP_002459385.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
gi|241922762|gb|EER95906.1| hypothetical protein SORBIDRAFT_02g003850 [Sorghum bicolor]
Length = 262
Score = 38.1 bits (87), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S+ KGS + + + RM V I+DGR +G F D+ N++L D E+R
Sbjct: 2 SNPKGSKML----QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|380800811|gb|AFE72281.1| LSM domain-containing protein 1 precursor, partial [Macaca
mulatta]
Length = 83
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ LL + M + + DGR +G F C D+ N+IL A E+ S S E R LG+
Sbjct: 2 QLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSAGEPRVLGLA 60
Query: 88 LIPS 91
++P
Sbjct: 61 MVPG 64
>gi|365984090|ref|XP_003668878.1| hypothetical protein NDAI_0B06030 [Naumovozyma dairenensis CBS
421]
gi|343767645|emb|CCD23635.1| hypothetical protein NDAI_0B06030 [Naumovozyma dairenensis CBS
421]
Length = 173
Score = 38.1 bits (87), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS--------- 77
SR+ L+ ++ V +DGR ++G DK N+IL D VE R + P
Sbjct: 10 SRLNDLINYKLRVITQDGRVYIGELLAFDKYMNLILSDCVEERIPKTQLPKLRNKVQDSI 69
Query: 78 PMEQRCLGIILI 89
+E+R LG+ ++
Sbjct: 70 KIEKRVLGLTIL 81
>gi|239787841|ref|NP_001155181.1| small ribonucleoprotein particle protein B [Apis mellifera]
Length = 217
Score = 38.1 bits (87), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 17 GSDTKGSNHIS-RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
G + K HI+ RVR +L +D R F+G+F DK N+IL D E+R + +
Sbjct: 4 GKNNKMLQHINYRVRIIL--------QDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKN 55
Query: 76 ---PSPMEQRCLGIILI 89
P ++R LG +L+
Sbjct: 56 TKQPEREDKRVLGFVLL 72
>gi|259482702|tpe|CBF77432.1| TPA: small nuclear ribonucleoprotein SmB, putative (AFU_orthologue;
AFUA_4G07740) [Aspergillus nidulans FGSC A4]
Length = 196
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 9/73 (12%)
Query: 37 MLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS-----PM----EQRCLGII 87
M V + DGR G DK N++L D E+R +R + S P+ E+R LG+
Sbjct: 1 MRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKAKSAPGNAPLVEAEEKRTLGLT 60
Query: 88 LIPSSCRTSCHVD 100
++ + SC VD
Sbjct: 61 IVRGTHVVSCSVD 73
>gi|226492272|ref|NP_001148524.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|195620004|gb|ACG31832.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
Length = 263
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 7/60 (11%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS 77
S+ KGS + + + RM V I+DGR +G F D+ N++L D E+ RR PS
Sbjct: 2 SNPKGSKML----QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEF---RRLPPS 54
>gi|226496711|ref|NP_001140478.1| uncharacterized protein LOC100272538 [Zea mays]
gi|194699658|gb|ACF83913.1| unknown [Zea mays]
gi|195606200|gb|ACG24930.1| small nuclear ribonucleoprotein-associated protein B [Zea mays]
gi|414592013|tpg|DAA42584.1| TPA: Small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 38.1 bits (87), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S+ KGS + + + RM V I+DGR +G F D+ N++L D E+R
Sbjct: 2 SNPKGSKML----QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|414883666|tpg|DAA59680.1| TPA: small nuclear ribonucleoprotein-associated protein B [Zea
mays]
Length = 263
Score = 38.1 bits (87), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S+ KGS + + + RM V I+DGR +G F D+ N++L D E+R
Sbjct: 2 SNPKGSKML----QFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|307193681|gb|EFN76364.1| Small nuclear ribonucleoprotein-associated protein B
[Harpegnathos saltator]
Length = 208
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
++D R F+G+F DK N+IL D E+R + + P E+R LG +L+
Sbjct: 13 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKPKNTKQPEREEKRVLGFVLL 64
>gi|302922530|ref|XP_003053485.1| hypothetical protein NECHADRAFT_98762 [Nectria haematococca mpVI
77-13-4]
gi|256734426|gb|EEU47772.1| hypothetical protein NECHADRAFT_98762 [Nectria haematococca mpVI
77-13-4]
Length = 209
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
SN ++ + RM V + DGR G DK N++L D E+R +R P
Sbjct: 2 SNKQGKMAGYINWRMRVTLNDGRAMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPAAPG 61
Query: 80 ------------EQRCLGIILI 89
E+R LG+ ++
Sbjct: 62 ASGSATQTIESEEKRTLGLTIV 83
>gi|402083875|gb|EJT78893.1| hypothetical protein GGTG_03986 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 126
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST--------------- 71
+ + LL + + + D R F G F C D N++L A EYR
Sbjct: 11 AYLASLLNKNLRITTTDTRMFWGQFKCTDPDCNVVLAHAYEYRHPTAEQVAEEARRAAAA 70
Query: 72 -RRTSPSPMEQRCLGIILIP 90
R M R LG+I++P
Sbjct: 71 QRPAFNLDMNSRFLGLIVVP 90
>gi|348669540|gb|EGZ09362.1| hypothetical protein PHYSODRAFT_304932 [Phytophthora sojae]
Length = 217
Score = 38.1 bits (87), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 5/68 (7%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP-----MEQ 81
S++ + RM V ++D R +G F DK N++L D E+R+ + S +E+
Sbjct: 7 SKMLNYINYRMKVTLQDSRVLIGYFMAFDKHMNLVLGDCEEFRTLKAKVKSAVSEERVEK 66
Query: 82 RCLGIILI 89
R LG++L+
Sbjct: 67 RHLGLVLL 74
>gi|396457884|ref|XP_003833555.1| hypothetical protein LEMA_P063160.1 [Leptosphaeria maculans JN3]
gi|312210103|emb|CBX90190.1| hypothetical protein LEMA_P063160.1 [Leptosphaeria maculans JN3]
Length = 210
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR---RTSPSPM 79
+N +++ L+ RM V ++DGR +G DK N++L D E+R TR + +P
Sbjct: 5 ANRQGKMQNLINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRRTRRRGKAAPGAT 64
Query: 80 EQ-------RCLGIILIPSSCRTSCHVD 100
+Q R +G+ +I + S VD
Sbjct: 65 QQVTETEERRAIGLTIIRGAHVISLSVD 92
>gi|336363832|gb|EGN92203.1| hypothetical protein SERLA73DRAFT_147568 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380958|gb|EGO22110.1| hypothetical protein SERLADRAFT_394784 [Serpula lacrymans var.
lacrymans S7.9]
Length = 100
Score = 38.1 bits (87), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 12/89 (13%)
Query: 20 TKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR------- 72
+KG +S L+ R+ V I DGR G D+ N++L D E+R R
Sbjct: 6 SKGGKMLS----LINWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGE 61
Query: 73 -RTSPSPMEQRCLGIILIPSSCRTSCHVD 100
T P +R LG++++ S V+
Sbjct: 62 TETPPEQEMKRALGLVILRGETVVSLSVE 90
>gi|452980360|gb|EME80121.1| hypothetical protein MYCFIDRAFT_86773 [Pseudocercospora fijiensis
CIRAD86]
Length = 204
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 14/84 (16%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR---TSPSPM-------- 79
K++ RM + DGR +G DK N++L D E+R +R S +P
Sbjct: 9 KMVNYRMRATMNDGRQLVGQMLAFDKHMNLVLADCEEFRKVKRKAKASGAPGAQTGGQMI 68
Query: 80 ---EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC VD
Sbjct: 69 EAEEKRSLGLAIVRGAHIVSCSVD 92
>gi|126138906|ref|XP_001385976.1| hypothetical protein PICST_68190 [Scheffersomyces stipitis CBS
6054]
gi|126093254|gb|ABN67947.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 166
Score = 38.1 bits (87), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE--YRSTRRTSPSPME 80
R++ V ++DGR G D+ N++LQD VE Y + P P E
Sbjct: 32 RKIFVLLRDGRNLFGILRTFDQFANLVLQDTVERIYLDNDKKQPEPQE 79
>gi|378754575|gb|EHY64606.1| hypothetical protein NERG_02416 [Nematocida sp. 1 ERTm2]
Length = 109
Score = 38.1 bits (87), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS 77
S GS + + L + + V ++DG++ +G+ D+ NI+L+D+ EY +T T S
Sbjct: 3 SAVTGSKGTRLMEEYLDKPIFVVMRDGKYMVGTLRSYDQYYNILLEDSTEY-TTSSTEYS 61
Query: 78 PMEQRCL 84
+E +
Sbjct: 62 SIESESV 68
>gi|261187907|ref|XP_002620371.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239593488|gb|EEQ76069.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239608467|gb|EEQ85454.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
gi|327356079|gb|EGE84936.1| LSM domain-containing protein [Ajellomyces dermatitidis ATCC 18188]
Length = 117
Score = 37.7 bits (86), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 20/95 (21%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR-------------STR 72
+ + LL + + + D R F+G+F C D NIIL EYR
Sbjct: 7 VQYLESLLGKTLRIHTIDTRLFVGTFKCTDNDRNIILSATHEYRYPSISPDIETEPADVA 66
Query: 73 RTSPSP-------MEQRCLGIILIPSSCRTSCHVD 100
R P+ M R +G++++P T +D
Sbjct: 67 RDDPAATGIVKADMTSRYIGLVVVPGQYITKIELD 101
>gi|169767932|ref|XP_001818437.1| LSM domain protein [Aspergillus oryzae RIB40]
gi|238484861|ref|XP_002373669.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
gi|83766292|dbj|BAE56435.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220701719|gb|EED58057.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
gi|391870559|gb|EIT79739.1| LSM domain protein [Aspergillus oryzae 3.042]
Length = 118
Score = 37.7 bits (86), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 5/53 (9%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
+ + L+ + + V D R F+G+F C D NIIL EYR PSP
Sbjct: 7 VQYLESLIGQTLRVHATDTRIFVGAFKCTDSARNIILASTYEYR-----FPSP 54
>gi|428183707|gb|EKX52564.1| hypothetical protein GUITHDRAFT_48153, partial [Guillardia theta
CCMP2712]
Length = 75
Score = 37.7 bits (86), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR---RTSPSPMEQRCLGIILIPSS 92
RM V I+DGR +G F DK NI+L D E+R E+R LG++++
Sbjct: 5 RMRVTIEDGRQLVGKFMAFDKHMNIVLGDCDEFRRLSVKGGKGEEREEKRSLGLVILRGE 64
Query: 93 CRTSCHVD 100
S V+
Sbjct: 65 SVVSLTVE 72
>gi|85119473|ref|XP_965639.1| hypothetical protein NCU02508 [Neurospora crassa OR74A]
gi|28927451|gb|EAA36403.1| predicted protein [Neurospora crassa OR74A]
gi|336464924|gb|EGO53164.1| hypothetical protein NEUTE1DRAFT_126545 [Neurospora tetrasperma
FGSC 2508]
gi|350297029|gb|EGZ78006.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 213
Score = 37.7 bits (86), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
+N ++ + RM V + DGR G DK N++L DA E+R +R P
Sbjct: 4 TNKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADAEEFRRIKRRQNKPAAPG 63
Query: 80 ------------EQRCLGIILI 89
E+R LG+ +I
Sbjct: 64 SSAPAVQTVEQEEKRTLGLTII 85
>gi|449433521|ref|XP_004134546.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
gi|449490639|ref|XP_004158663.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Cucumis sativus]
Length = 284
Score = 37.7 bits (86), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR-----STRRTSPSPMEQ 81
S++ + + RM V I+DGR +G F D+ N++L D E+R ++T+ E+
Sbjct: 7 SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKTNEERDER 66
Query: 82 RCLGIILI 89
R LG++L+
Sbjct: 67 RTLGLVLL 74
>gi|358382440|gb|EHK20112.1| hypothetical protein TRIVIDRAFT_213486 [Trichoderma virens
Gv29-8]
Length = 215
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%), Gaps = 14/81 (17%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
SN + ++ + RM V ++D R +G D+ N++L D E+R +R P
Sbjct: 3 SNKLGKMAGYINYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRIKRKQNKPAAPG 62
Query: 80 -----------EQRCLGIILI 89
E+R LG++++
Sbjct: 63 GSSSGQTVVQEEKRTLGLVIV 83
>gi|297725409|ref|NP_001175068.1| Os07g0166600 [Oryza sativa Japonica Group]
gi|255677541|dbj|BAH93796.1| Os07g0166600 [Oryza sativa Japonica Group]
Length = 261
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S+ KGS + + + RM V I+DGR +G F D+ N++L D E+R
Sbjct: 2 SNPKGSKML----QFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|46108400|ref|XP_381258.1| hypothetical protein FG01082.1 [Gibberella zeae PH-1]
gi|408390024|gb|EKJ69440.1| hypothetical protein FPSE_10373 [Fusarium pseudograminearum
CS3096]
Length = 210
Score = 37.7 bits (86), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
SN ++ + RM V + DGR G DK N++L D E+R +R P
Sbjct: 2 SNKQGKMAGYINWRMRVTLNDGRAMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPAAPG 61
Query: 80 -----------EQRCLGIILI 89
E+R LG+ ++
Sbjct: 62 ASGSGSLVESEEKRTLGLTIV 82
>gi|412992736|emb|CCO18716.1| unknown protein [Bathycoccus prasinos]
Length = 137
Score = 37.7 bits (86), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 39 VGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
V + DGR F G+ C+DKQ N++L +A E
Sbjct: 16 VSVTDGRVFTGTLGCVDKQLNVVLINATE 44
>gi|255087740|ref|XP_002505793.1| predicted protein [Micromonas sp. RCC299]
gi|226521063|gb|ACO67051.1| predicted protein [Micromonas sp. RCC299]
Length = 204
Score = 37.7 bits (86), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
N S++ + RM + I DGR +G F D+ N++L DA E+R
Sbjct: 4 NRTSKMLAYINYRMRITIVDGRQIVGRFMAFDRHMNLVLSDAEEFR 49
>gi|295662236|ref|XP_002791672.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226279798|gb|EEH35364.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 126
Score = 37.7 bits (86), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 21 KGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+ + + + LL + + + D R F+G+F C D NIIL EYR
Sbjct: 2 ENAQAVQYLESLLGKTLRIHTTDTRLFVGTFKCTDNDRNIILSTTHEYR 50
>gi|358387658|gb|EHK25252.1| hypothetical protein TRIVIDRAFT_54762 [Trichoderma virens Gv29-8]
Length = 102
Score = 37.7 bits (86), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 13/72 (18%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS-------------TRRTSPSP 78
LL + + + DGR F G+F C D NI+L ++ EYR + ++
Sbjct: 13 LLNQILRIYTTDGRMFRGTFKCTDPDRNIVLGNSHEYRQPSEEERSAAAANASGSSTTLD 72
Query: 79 MEQRCLGIILIP 90
M R LG+I++P
Sbjct: 73 MTSRYLGLIVVP 84
>gi|398395353|ref|XP_003851135.1| hypothetical protein MYCGRDRAFT_74038 [Zymoseptoria tritici IPO323]
gi|339471014|gb|EGP86111.1| hypothetical protein MYCGRDRAFT_74038 [Zymoseptoria tritici IPO323]
Length = 207
Score = 37.4 bits (85), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
SN +++ + RM + DGR +G DK N++L D E+R +R +
Sbjct: 3 SNKQGKMQGFINYRMRATLNDGRQLVGQMLAFDKHMNLVLADCEEFRKVKRKAKGGAPGA 62
Query: 80 ----------EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + S VD
Sbjct: 63 SAGGQMVETEEKRSLGLAIVRGATIVSASVD 93
>gi|330929454|ref|XP_003302642.1| hypothetical protein PTT_14550 [Pyrenophora teres f. teres 0-1]
gi|311321831|gb|EFQ89242.1| hypothetical protein PTT_14550 [Pyrenophora teres f. teres 0-1]
Length = 212
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR---RTSPSPM 79
+N +++ L+ RM V ++DGR +G DK N++L D E+R TR + +P
Sbjct: 5 ANRQGKMQNLINYRMKVTLQDGRQMVGQMLAFDKHMNLVLADTEEFRRTRRRGKAAPGAA 64
Query: 80 EQ-------RCLGIILIPSSCRTSCHVD 100
+Q R +G+ +I + S VD
Sbjct: 65 QQVTETEERRAIGLTIIRGAHVISLSVD 92
>gi|56753874|gb|AAW25134.1| SJCHGC05770 protein [Schistosoma japonicum]
gi|226469900|emb|CAX70231.1| LSM1 homolog, U6 small nuclear RNA associated [Schistosoma
japonicum]
gi|226469902|emb|CAX70232.1| LSM1 homolog, U6 small nuclear RNA associated [Schistosoma
japonicum]
Length = 139
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 25/35 (71%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
+ ++M+V ++ GR F+G ID+ GN++L +AVE
Sbjct: 18 IGKKMVVSLRGGRMFIGFLRIIDQFGNVVLHNAVE 52
>gi|223995851|ref|XP_002287599.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976715|gb|EED95042.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 113
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP-------- 78
S++ + + R+ V + DGR +G+F DK N++L D E+R+ R ++
Sbjct: 4 SKLLRYIEHRLRVSLSDGRTIIGTFLAFDKHLNLVLVDTEEFRTLRSSNSKSNGGAGRAA 63
Query: 79 -----MEQRCLGIILIPSSCRTSCHVD 100
E+R LG+I++ S V+
Sbjct: 64 IVEERQEKRSLGLIILRGENVVSIAVE 90
>gi|449295488|gb|EMC91510.1| hypothetical protein BAUCODRAFT_330833 [Baudoinia compniacensis
UAMH 10762]
Length = 175
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 14/91 (15%)
Query: 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR---TSPSPM- 79
N +++ + RM + DGR +G DK N++L D E+R RR + +P
Sbjct: 5 NKQGKMQGFVNYRMRATLNDGRQLVGQMLAFDKHMNLVLADCDEFRKVRRKTKGAGAPGS 64
Query: 80 ----------EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC V+
Sbjct: 65 SGATQTVETEEKRSLGLAIVRGATVVSCSVE 95
>gi|378725358|gb|EHY51817.1| small nuclear ribonucleoprotein B and B' [Exophiala dermatitidis
NIH/UT8656]
Length = 227
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 18/96 (18%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
+N +++ L+ RM V + DGR G DK N++L D E+R +R P
Sbjct: 2 ANKQGKMQHLINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRKVKRKQNKPSAPA 61
Query: 80 -----------EQRCLGIILIPSSCRTSCHVDCSID 104
E+R LG++++ R + V CS++
Sbjct: 62 APGSAALVETEEKRTLGLVIL----RGTNIVSCSVE 93
>gi|429966424|gb|ELA48421.1| hypothetical protein VCUG_00030 [Vavraia culicis 'floridensis']
Length = 89
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 85
I+ +K L ++ + ++D RFF+G+ ID+ NI+L D E+R + + E R LG
Sbjct: 2 INSFKKFLKCKVKIELEDRRFFIGNLLAIDEFLNIVLNDTEEHRKYK--NKKGYETRNLG 59
Query: 86 IILIPSS 92
+ + S
Sbjct: 60 LCVFRGS 66
>gi|409040887|gb|EKM50373.1| hypothetical protein PHACADRAFT_104351 [Phanerochaete carnosa
HHB-10118-sp]
Length = 105
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR--------RTSPSPMEQRC 83
L+ R+ V + DGR F+G D+ N++L + E+R R P+ +R
Sbjct: 4 LINWRLKVTVNDGRAFVGQMLAFDRHMNLVLAECEEFRRVRPKKKSGETEAGPAQEMKRT 63
Query: 84 LGIILIPSSCRTSCHVD 100
LG++++ S V+
Sbjct: 64 LGLVILRGETVVSLSVE 80
>gi|116181000|ref|XP_001220349.1| hypothetical protein CHGG_01128 [Chaetomium globosum CBS 148.51]
gi|88185425|gb|EAQ92893.1| hypothetical protein CHGG_01128 [Chaetomium globosum CBS 148.51]
Length = 381
Score = 37.4 bits (85), Expect = 1.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 14/68 (20%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--------------EQ 81
RM V + DGR G DK N++L D E+R ++R P E+
Sbjct: 17 RMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRSKRKQNKPAAPGASSSTTVLEQEEK 76
Query: 82 RCLGIILI 89
R LG+ ++
Sbjct: 77 RTLGLTIV 84
>gi|357622892|gb|EHJ74252.1| small nuclear ribonucleoprotein polypeptide [Danaus plexippus]
Length = 180
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
R+ V ++D R F+G+F DK N+IL D E+R + + + E+R LG +L+
Sbjct: 8 RVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNTKTVDREEKRTLGFVLL 64
>gi|317155545|ref|XP_003190622.1| small nuclear ribonucleoprotein (LSM8) [Aspergillus oryzae RIB40]
Length = 98
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSS 92
+ +++LV DGR LG+ D+ N++L D +E P P Q G+ LI
Sbjct: 7 INKKVLVLTVDGRTLLGTLLSTDQLTNLVLLDTIERIIRTPDDPEPSSQIEHGLYLIRGD 66
Query: 93 CRTSC-HVDCSIDEQLSLLKV 112
C VD ID ++ KV
Sbjct: 67 NVVVCGEVDEKIDGEIDWAKV 87
>gi|452824595|gb|EME31597.1| small nuclear ribonucleoprotein B and B' [Galdieria sulphuraria]
Length = 214
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGI 86
S++ + + R+ V + D R +G DK N++L D E+R ++ E+R LG+
Sbjct: 7 SKLLQYINYRLRVSLDDQRVIVGQLLAFDKHLNLVLNDCEEFRKLKKQDKE--EKRALGL 64
Query: 87 ILIPSSCRTSCHVDCSIDEQ 106
+L+ + V+ EQ
Sbjct: 65 VLLRGESVITMTVESPPPEQ 84
>gi|326521412|dbj|BAJ96909.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 264
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Query: 18 SDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S+ KGS + + + RM V I+DGR +G F D+ N++L D E+R
Sbjct: 2 SNPKGSKML----QFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|321466061|gb|EFX77059.1| hypothetical protein DAPPUDRAFT_305959 [Daphnia pulex]
Length = 234
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 17/69 (24%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR------------STRRTSPSPME 80
L R+ V ++D R F+G+F DK N+IL D E+R +T R E
Sbjct: 13 LNYRVRVTLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKAKINKSGVGATERE-----E 67
Query: 81 QRCLGIILI 89
+R LG++L+
Sbjct: 68 KRVLGLVLL 76
>gi|406866267|gb|EKD19307.1| small nuclear ribonucleoprotein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 191
Score = 37.4 bits (85), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
+N ++ L+ RM V + DGR +G DK N++L D E+R +R +
Sbjct: 2 ANKQGKMAGLINYRMRVTMNDGRQMVGQMLAFDKHMNLVLADTEEFRRVKRKA 54
>gi|242012261|ref|XP_002426852.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212511065|gb|EEB14114.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 84
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 43 DGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCS 102
+GR +G F C D+ N+IL EY R E R LG++++P S H D S
Sbjct: 27 NGRVLIGIFLCTDRDANVILGSCSEY--LREEDCFTEEPRGLGLVMVPGRHIVSIHQDKS 84
>gi|164657750|ref|XP_001730001.1| hypothetical protein MGL_2987 [Malassezia globosa CBS 7966]
gi|159103895|gb|EDP42787.1| hypothetical protein MGL_2987 [Malassezia globosa CBS 7966]
Length = 147
Score = 37.4 bits (85), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
L+ +R++V ++DGR LG D+ N++LQDAVE
Sbjct: 21 LVDKRVIVVLRDGRKLLGVLRSYDQFANLVLQDAVE 56
>gi|134545|sp|P17136.1|RSMB_RAT RecName: Full=Small nuclear ribonucleoprotein-associated protein B;
Short=snRNP-B; Short=snRPB; AltName: Full=SM11; AltName:
Full=Sm protein B; Short=Sm-B; Short=SmB
gi|207010|gb|AAA42159.1| small nuclear ribonucleoparticle-associated protein, partial
[Rattus norvegicus]
Length = 214
Score = 37.0 bits (84), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSSCRTSC 97
+++GR F+G+F DK N+IL D E+R + + E+R LG++L+ S
Sbjct: 4 LQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 63
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 64 TVEGPPPKDTGIARV 78
>gi|443918992|gb|ELU39293.1| hypothetical protein AG1IA_06679 [Rhizoctonia solani AG-1 IA]
Length = 89
Score = 37.0 bits (84), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 7/85 (8%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQR 82
S+ + + LL + + V I+DGR L CID++ NI+L + EY R
Sbjct: 8 SDKVQELNSLLAKTLRVLIQDGRRTLA---CIDREKNIVLSNTDEYPPPPSPDGP----R 60
Query: 83 CLGIILIPSSCRTSCHVDCSIDEQL 107
+G+I++P S ++ + + L
Sbjct: 61 FVGLIMVPWRYVISVELEVVLGQDL 85
>gi|351713280|gb|EHB16199.1| Small nuclear ribonucleoprotein-associated protein B'
[Heterocephalus glaber]
Length = 195
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DG F+G+F DK N+IL D EYR + + E+R LG++L+
Sbjct: 16 RMRCILQDGWIFIGTFKAFDKHMNLILCDCDEYRKIKPKNFKQAEREEKRVLGLVLL 72
>gi|367044292|ref|XP_003652526.1| hypothetical protein THITE_2114118 [Thielavia terrestris NRRL
8126]
gi|346999788|gb|AEO66190.1| hypothetical protein THITE_2114118 [Thielavia terrestris NRRL
8126]
Length = 211
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR 73
+N ++ + RM V + DGR G DK N++L D E+R T+R
Sbjct: 4 TNKQGKMAGYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRTKR 54
>gi|290992103|ref|XP_002678674.1| predicted protein [Naegleria gruberi]
gi|284092287|gb|EFC45930.1| predicted protein [Naegleria gruberi]
Length = 83
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS--TRRTSPSPMEQ-RC 83
S++ + L RM + ++DGR +G F DK N+++ D E+R + + +EQ R
Sbjct: 3 SKLYQFLNYRMRITLQDGRQIVGKFMAFDKFMNLVVADCEEFRKIIPKGSKGEEVEQKRS 62
Query: 84 LGIILI 89
LG +LI
Sbjct: 63 LGFLLI 68
>gi|440636332|gb|ELR06251.1| hypothetical protein GMDG_02046 [Geomyces destructans 20631-21]
Length = 205
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
+N ++ L+ RM V + DGR +G DK N++L D E+R +R +
Sbjct: 2 ANKQGKMAGLINYRMRVTMNDGRQMIGQMLAFDKHMNLVLADTEEFRRVKRKA 54
>gi|50285713|ref|XP_445285.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524589|emb|CAG58191.1| unnamed protein product [Candida glabrata]
Length = 165
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 12/77 (15%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS------- 77
H SR+ L+ ++ V +DGR ++G DK N++L D VE R ++
Sbjct: 8 HNSRLADLINYKLRVITQDGRVYIGILLAFDKHMNVVLSDCVEERVLKKQIDDIKNKGSV 67
Query: 78 -----PMEQRCLGIILI 89
+E+R LG++++
Sbjct: 68 DRDNLKVEKRVLGLVIL 84
>gi|221504537|gb|EEE30210.1| lsm1, putative [Toxoplasma gondii VEG]
Length = 335
Score = 37.0 bits (84), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 10 TLVESSAGSDTKGS-------NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIIL 62
++ S AG +GS N I+ + + L +++LV ++DGR +G D+ GN++L
Sbjct: 196 AVLPSPAGDSGEGSPRNSGMPNWITALEEELDKKLLVVLRDGRKLIGYLRTFDQFGNLVL 255
Query: 63 QDAVE 67
+ V+
Sbjct: 256 EGTVQ 260
>gi|225680898|gb|EEH19182.1| hypothetical protein PABG_01501 [Paracoccidioides brasiliensis
Pb03]
Length = 221
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 39/83 (46%), Gaps = 18/83 (21%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-----------PSPM---EQ 81
RM V + DGR G DK N++L D E+R +R S PS + E+
Sbjct: 10 RMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSTKTTQAPGSSTPSLVEVEEK 69
Query: 82 RCLGIILIPSSCRTSCHVDCSID 104
R LG+ ++ R + V CS+D
Sbjct: 70 RTLGLTIV----RGTHVVSCSVD 88
>gi|221482497|gb|EEE20845.1| conserved hypothetical protein [Toxoplasma gondii GT1]
Length = 335
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 10 TLVESSAGSDTKGS-------NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIIL 62
++ S AG +GS N I+ + + L +++LV ++DGR +G D+ GN++L
Sbjct: 196 AVLPSPAGDSGEGSPRNSGMPNWITALEEELDKKLLVVLRDGRKLIGYLRTFDQFGNLVL 255
Query: 63 QDAVE 67
+ V+
Sbjct: 256 EGTVQ 260
>gi|440586625|emb|CCK33034.1| RNA-binding protein SmB [Platynereis dumerilii]
Length = 204
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
S++ + + RM ++DGR F+G+F DK N+IL D E+R +
Sbjct: 7 SKMLQHINYRMRCTLQDGRIFIGTFKAFDKHMNLILGDCDEFRKIK 52
>gi|237841501|ref|XP_002370048.1| U6 snRNA-associated Sm-like protein LSm1, putative [Toxoplasma
gondii ME49]
gi|211967712|gb|EEB02908.1| U6 snRNA-associated Sm-like protein LSm1, putative [Toxoplasma
gondii ME49]
Length = 335
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 7/65 (10%)
Query: 10 TLVESSAGSDTKGS-------NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIIL 62
++ S AG +GS N I+ + + L +++LV ++DGR +G D+ GN++L
Sbjct: 196 AVLPSPAGDSGEGSPRNSGMPNWITALEEELDKKLLVVLRDGRKLIGYLRTFDQFGNLVL 255
Query: 63 QDAVE 67
+ V+
Sbjct: 256 EGTVQ 260
>gi|126138766|ref|XP_001385906.1| hypothetical protein PICST_32971 [Scheffersomyces stipitis CBS
6054]
gi|126093184|gb|ABN67877.1| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 142
Score = 37.0 bits (84), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 28/48 (58%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT 74
+++ L+ R+ + D RFF+GS DK N++L D E R T+++
Sbjct: 10 TKMSDLIHYRLKISTIDNRFFIGSLLAFDKHLNLVLSDTEETRITKKS 57
>gi|342879533|gb|EGU80778.1| hypothetical protein FOXB_08645 [Fusarium oxysporum Fo5176]
Length = 224
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 15/82 (18%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
SN ++ + RM V + DGR G DK N++L D E+R +R P
Sbjct: 2 SNKQGKMAGYINWRMRVTLNDGRAMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPSAPG 61
Query: 80 ------------EQRCLGIILI 89
E+R LG+ ++
Sbjct: 62 ASGSATQTIESEEKRTLGLTIV 83
>gi|453089259|gb|EMF17299.1| hypothetical protein SEPMUDRAFT_113298 [Mycosphaerella populorum
SO2202]
Length = 103
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST------------RRTSPS- 77
++L R + V DGR F+G C D++ N+IL EYR +T S
Sbjct: 14 QMLNRTLHVHTADGRMFVGQLKCTDRERNLILAMTHEYRQPSHLDIQRAAQRHEQTGASG 73
Query: 78 ----PMEQRCLGIILIPS 91
M++R +G++++P
Sbjct: 74 NFHLDMKKRFVGLVVLPG 91
>gi|449547896|gb|EMD38863.1| hypothetical protein CERSUDRAFT_112585 [Ceriporiopsis subvermispora
B]
Length = 184
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 20 TKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR------R 73
+KG +S L+ R+ V I DGR F+G D+ N++L + E+R R
Sbjct: 6 SKGGKMLS----LINWRLKVTINDGRAFVGQMLAFDRHMNLVLAECEEFRRIRPKKKPGE 61
Query: 74 TSPSPMEQ--RCLGIILIPSSCRTSCHVD 100
T P+++ R LG++++ S V+
Sbjct: 62 TEAGPVQEMKRTLGLVILRGETVVSLSVE 90
>gi|238491680|ref|XP_002377077.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus flavus
NRRL3357]
gi|220697490|gb|EED53831.1| small nuclear ribonucleoprotein SmB, putative [Aspergillus flavus
NRRL3357]
Length = 203
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 37 MLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-P------SPM----EQRCLG 85
M V + DGR G DK N++L D E+R +R S P +P+ E+R LG
Sbjct: 1 MRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSKPAAGPANAPLVESEEKRTLG 60
Query: 86 IILIPSSCRTSCHVD 100
+ ++ + SC VD
Sbjct: 61 LTIVRGTHVVSCSVD 75
>gi|121701687|ref|XP_001269108.1| small nuclear ribonucleoprotein (LSM8), putative [Aspergillus
clavatus NRRL 1]
gi|119397251|gb|EAW07682.1| small nuclear ribonucleoprotein (LSM8), putative [Aspergillus
clavatus NRRL 1]
Length = 98
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCR 94
+++L+ DGR LG+ D+ N++L D +E P P Q G+ LI
Sbjct: 9 KKVLILTVDGRTLLGTLLSTDQLTNLVLVDTIERIIRTPDDPEPSSQIEHGLYLIRGDNV 68
Query: 95 TSC-HVDCSIDEQLSLLKV 112
C +D +ID+ + KV
Sbjct: 69 VLCGEIDEAIDKDIDWTKV 87
>gi|407921641|gb|EKG14782.1| hypothetical protein MPH_08057 [Macrophomina phaseolina MS6]
Length = 218
Score = 37.0 bits (84), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS 75
N +++ L+ RM + DGR G DK N++L D E+R +R S
Sbjct: 5 NKQGKMQNLINYRMRATLNDGRQMAGQMLAFDKHMNLVLADTEEFRRVKRKS 56
>gi|145491875|ref|XP_001431936.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399043|emb|CAK64538.1| unnamed protein product [Paramecium tetraurelia]
Length = 126
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGI 86
S+ + + R+ + + DGR +G+F DK N+IL + EYR ++ +R LG+
Sbjct: 5 SKFFQWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGM 64
Query: 87 ILI 89
I++
Sbjct: 65 IIV 67
>gi|307105891|gb|EFN54138.1| hypothetical protein CHLNCDRAFT_135527 [Chlorella variabilis]
Length = 159
Score = 36.6 bits (83), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 8/77 (10%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS---TRRTSPSPMEQ-RCLGII 87
L+ RM V + DGR +G F D+ N++L DA E+R + + EQ R LG++
Sbjct: 11 LINYRMRVTVVDGRQIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGVAEEDREQRRVLGLV 70
Query: 88 LIPSSCRTSCHVDCSID 104
++ R VD +I+
Sbjct: 71 IL----RGDEVVDLTIE 83
>gi|145499845|ref|XP_001435907.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124403043|emb|CAK68510.1| unnamed protein product [Paramecium tetraurelia]
Length = 138
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGI 86
S+ + + R+ + + DGR +G+F DK N+IL + EYR ++ +R LG+
Sbjct: 5 SKFFQWIDYRVRITLGDGRMLVGTFLAFDKHLNVILSECEEYRIRKQGIHEIETKRTLGM 64
Query: 87 ILI 89
I++
Sbjct: 65 IIV 67
>gi|219118608|ref|XP_002180073.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408330|gb|EEC48264.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 114
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP--------ME 80
+R LL R+ + DGR +G C+D+ N++L D E R+ T +P +
Sbjct: 21 IRNLLGSRVSCTLSDGRQTVGVLVCVDRLKNMVLTDCWETRTIVSTDYNPDKTNVVKTLA 80
Query: 81 QRCLGIILIPSSCRTSCHVDCSIDEQ 106
+R L ++P + V+ I EQ
Sbjct: 81 KRHLQQAMVPGANLVKVEVENLIYEQ 106
>gi|154279158|ref|XP_001540392.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150412335|gb|EDN07722.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 244
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT---------SPSPM-----EQ 81
RM V + DGR G DK N++L D E+R +R S +P E+
Sbjct: 32 RMRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKSTKSTQAPGSSTPTLVEAEEK 91
Query: 82 RCLGIILIPSSCRTSCHVD 100
R LG+ ++ + SC VD
Sbjct: 92 RTLGLTILRGTQVVSCSVD 110
>gi|255943399|ref|XP_002562468.1| Pc18g06410 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587201|emb|CAP94865.1| Pc18g06410 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 366
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
LL R + + D R F+G F C D NIIL ++ EYR
Sbjct: 13 LLGRTLRIHTTDTRMFVGLFKCTDADRNIILANSFEYR 50
>gi|340519199|gb|EGR49438.1| predicted protein [Trichoderma reesei QM6a]
Length = 217
Score = 36.6 bits (83), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
SN + ++ + RM V ++D R +G D+ N++L D E+R +R + S
Sbjct: 3 SNKLGKMAGYINYRMRVTLQDSRQLVGQMLAYDRHMNLVLADTEEFRRVKRKNKSAAPGG 62
Query: 80 ---------EQRCLGIIL 88
E+R LG+++
Sbjct: 63 SAGQTVVQEEKRTLGLVI 80
>gi|443734551|gb|ELU18483.1| hypothetical protein CAPTEDRAFT_165566 [Capitella teleta]
Length = 183
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 5/95 (5%)
Query: 24 NHISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP-- 78
+++ R K+L RM + DGR F+G+F DK N+IL D E+R +
Sbjct: 2 SNVGRSSKMLQHINFRMRCTLLDGRTFIGTFLAFDKHMNLILGDCDEFRRVKPKGKGADK 61
Query: 79 MEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVD 113
E+R LG++L+ S V+ + + +V
Sbjct: 62 EEKRVLGLVLLRGENLVSMTVEGPPPAEEGIARVP 96
>gi|389593505|ref|XP_003722006.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|321438508|emb|CBZ12267.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
Length = 111
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPSPMEQRC 83
+ + K+LC V + DGR G DK N++L DAVE R S + +R
Sbjct: 7 LHNINKVLC----VMLDDGRTVTGKLLVFDKHMNVVLGDAVEERPQSKKMAEEGVSSKRQ 62
Query: 84 LGIILI 89
LG+IL+
Sbjct: 63 LGLILL 68
>gi|302755206|ref|XP_002961027.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
gi|302767128|ref|XP_002966984.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300164975|gb|EFJ31583.1| hypothetical protein SELMODRAFT_8957 [Selaginella moellendorffii]
gi|300171966|gb|EFJ38566.1| hypothetical protein SELMODRAFT_8958 [Selaginella moellendorffii]
Length = 94
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ----- 81
S++ + RM V I+DGR +G F D+ N +L D E+R + +Q
Sbjct: 7 SKMLNYINYRMRVTIQDGRQLVGKFMAFDRHMNFVLGDTEEFRRLPPKKGAGKQQGGEER 66
Query: 82 ---RCLGIILI 89
R LG+IL+
Sbjct: 67 EDRRTLGLILL 77
>gi|53733498|gb|AAH83694.1| Snrpb protein [Rattus norvegicus]
Length = 71
Score = 36.6 bits (83), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 15 SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
+ G +K HI RM ++DGR F+G+F DK N+IL D E+R +
Sbjct: 2 TVGKSSKMLQHIDY-------RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 52
>gi|453081814|gb|EMF09862.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 207
Score = 36.6 bits (83), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 14/88 (15%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR-----TSPSPM-- 79
+++ + RM DGR +G DK N++L D E+R +R +P
Sbjct: 8 GKMQGFINYRMRATTNDGRQLVGQMLAFDKHMNLVLADCEEFRKVKRKAKQGGAPGATTS 67
Query: 80 -------EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC VD
Sbjct: 68 GQTVETEEKRSLGLAIVRGANIVSCSVD 95
>gi|297799992|ref|XP_002867880.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
gi|297313716|gb|EFH44139.1| hypothetical protein ARALYDRAFT_492815 [Arabidopsis lyrata subsp.
lyrata]
Length = 258
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S++ + + RM V I+DGR +G F D+ N++L D E+R
Sbjct: 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|401827282|ref|XP_003887733.1| Sm-like protein [Encephalitozoon hellem ATCC 50504]
gi|392998740|gb|AFM98752.1| Sm-like protein [Encephalitozoon hellem ATCC 50504]
Length = 79
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
K + R+ V ++DGR+ G+ ID+ N +L D E+R R +R LG++++
Sbjct: 7 KYMNYRVKVRMRDGRWMEGTMMAIDEDVNAVLDDTEEFR--RMKGSKETRRRTLGLVVVR 64
Query: 91 SSCRTSCHV 99
V
Sbjct: 65 GGFVVDVEV 73
>gi|74136537|ref|NP_001028167.1| small nuclear ribonucleoprotein-associated protein B' isoform 1
[Monodelphis domestica]
gi|5870115|gb|AAD54483.1|AF134828_1 truncated small nuclear ribonucleoprotein B' [Monodelphis
domestica]
Length = 67
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
RM ++DGR F+G+F DK N+IL D E+R +
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 52
>gi|70995556|ref|XP_752533.1| small nuclear ribonucleoprotein Lsm8 [Aspergillus fumigatus Af293]
gi|119495627|ref|XP_001264594.1| small nuclear ribonucleoprotein (LSM8), putative [Neosartorya
fischeri NRRL 181]
gi|41581243|emb|CAE47892.1| u6 snrna-associated sm-like protein, putative [Aspergillus
fumigatus]
gi|66850168|gb|EAL90495.1| small nuclear ribonucleoprotein Lsm8, putative [Aspergillus
fumigatus Af293]
gi|119412756|gb|EAW22697.1| small nuclear ribonucleoprotein (LSM8), putative [Neosartorya
fischeri NRRL 181]
gi|159131288|gb|EDP56401.1| small nuclear ribonucleoprotein (LSM8), putative [Aspergillus
fumigatus A1163]
Length = 98
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSS 92
+ +++L+ DGR LG+ D+ N++L D +E P P Q G+ LI
Sbjct: 7 INKKVLILTVDGRTLLGTLLSTDQLTNLVLLDTIERIIRTPDDPEPSSQIEHGLYLIRGD 66
Query: 93 CRTSC-HVDCSIDEQLSLLKV 112
C VD +ID + KV
Sbjct: 67 NVVLCGEVDEAIDNDIDWSKV 87
>gi|15237095|ref|NP_193777.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|30685110|ref|NP_849414.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|79325195|ref|NP_001031682.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|238480869|ref|NP_001154258.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|5262167|emb|CAB45810.1| putative snRNP protein [Arabidopsis thaliana]
gi|7268840|emb|CAB79044.1| putative snRNP protein [Arabidopsis thaliana]
gi|28393634|gb|AAO42236.1| putative snRNP protein [Arabidopsis thaliana]
gi|28827492|gb|AAO50590.1| putative snRNP protein [Arabidopsis thaliana]
gi|222423490|dbj|BAH19715.1| AT4G20440 [Arabidopsis thaliana]
gi|332658930|gb|AEE84330.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658931|gb|AEE84331.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658932|gb|AEE84332.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
gi|332658933|gb|AEE84333.1| small nuclear ribonucleoprotein associated protein B [Arabidopsis
thaliana]
Length = 257
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S++ + + RM V I+DGR +G F D+ N++L D E+R
Sbjct: 7 SKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|367013764|ref|XP_003681382.1| hypothetical protein TDEL_0D05870 [Torulaspora delbrueckii]
gi|359749042|emb|CCE92171.1| hypothetical protein TDEL_0D05870 [Torulaspora delbrueckii]
Length = 172
Score = 36.6 bits (83), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
SR+ L+ R+ V +DGR ++G DK N++L++ VE R R
Sbjct: 10 SRLADLVGYRLRVITQDGRVYIGELMAFDKHMNVVLKNCVEERVPR 55
>gi|444729301|gb|ELW69726.1| Small nuclear ribonucleoprotein-associated protein N [Tupaia
chinensis]
Length = 234
Score = 36.6 bits (83), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++D R F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDSRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
>gi|154340018|ref|XP_001565966.1| putative small nuclear ribonucleoprotein protein [Leishmania
braziliensis MHOM/BR/75/M2904]
gi|134063284|emb|CAM45490.1| putative small nuclear ribonucleoprotein protein [Leishmania
braziliensis MHOM/BR/75/M2904]
Length = 110
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPSPMEQRC 83
+ + ++LC V + DGR G DK N++L DAVE R S R +R
Sbjct: 7 LHNINRVLC----VVLDDGRSVTGKLLVFDKHMNVVLGDAVEERPQSKRMAEEGVSSKRQ 62
Query: 84 LGIILI 89
LG+IL+
Sbjct: 63 LGLILL 68
>gi|281212168|gb|EFA86328.1| hypothetical protein PPL_00119 [Polysphondylium pallidum PN500]
Length = 191
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 24/98 (24%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE-------YR--------- 69
I ++ + + R ++VG+ R G C+DKQ NI+L +A E Y+
Sbjct: 38 IKKLMEYMERDVIVGVVGNRVIKGKLTCLDKQENILLSNAHEELFTDEKYQQYLEKKKAV 97
Query: 70 -----STRRTSP-SPME--QRCLGIILIPSSCRTSCHV 99
+ RT P P ++ LG I++P SC V
Sbjct: 98 DETLPESERTEPIKPKNNGRKELGFIIVPMKYIVSCRV 135
>gi|115390653|ref|XP_001212831.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193755|gb|EAU35455.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 119
Score = 36.2 bits (82), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+ + L+ + + + D R F+GSF C D NIIL EYR
Sbjct: 7 VQYLESLIGQTLRIHASDTRIFVGSFKCTDAARNIILGGTYEYR 50
>gi|221113173|ref|XP_002160894.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Hydra magnipapillata]
Length = 179
Score = 36.2 bits (82), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 5/59 (8%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR-----STRRTSPSPMEQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 17 RMRCQLQDGRTFIGTFLAFDKHMNLILGDCDEFRKIKPKTNKGVEKEKEEKRALGLVLL 75
>gi|449298949|gb|EMC94963.1| hypothetical protein BAUCODRAFT_34961 [Baudoinia compniacensis UAMH
10762]
Length = 198
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
+++ L ++++V ++DGR +G D+ GN++LQD VE
Sbjct: 72 AQLLDLTDKKLMVALRDGRKLIGVLRSWDQFGNLVLQDTVE 112
>gi|320170227|gb|EFW47126.1| hypothetical protein CAOG_05070 [Capsaspora owczarzaki ATCC 30864]
Length = 95
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 8/87 (9%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAV--EYRSTRRTSPSPMEQRC 83
+S + +LL ++LV DGR F+G+ D+ NIIL+ V E+ + R
Sbjct: 1 MSGLEELLQSKVLVATTDGRIFVGTLRGFDQMCNIILEHTVEREFNAQRGVVIV-----A 55
Query: 84 LGIILIPS-SCRTSCHVDCSIDEQLSL 109
LG+ +I + VD IDE + L
Sbjct: 56 LGLYIIKGENIAVVGSVDPEIDESMDL 82
>gi|452837597|gb|EME39539.1| hypothetical protein DOTSEDRAFT_75264 [Dothistroma septosporum
NZE10]
Length = 206
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 14/84 (16%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM----------- 79
K++ RM + DGR +G DK N++L + E+R +R S +
Sbjct: 8 KMINYRMRATMTDGRQLVGQMLAFDKHMNLVLSECEEFRKVKRKSKAGGAPGAASAAQVI 67
Query: 80 ---EQRCLGIILIPSSCRTSCHVD 100
E+R LG+ ++ + SC VD
Sbjct: 68 ETEEKRMLGLAIVRGATIVSCAVD 91
>gi|115491675|ref|XP_001210465.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114197325|gb|EAU39025.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 98
Score = 36.2 bits (82), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSS 92
+ +++L+ DGR LG+ D+ N++L D +E P P Q G+ LI
Sbjct: 7 INKKVLILTVDGRTLLGTLLSTDQLTNLVLLDTIERIIRTPDDPEPSSQIEHGLYLIRGD 66
Query: 93 CRTSC-HVDCSIDEQLSLLKV 112
C VD ID + KV
Sbjct: 67 NVVVCGEVDEGIDNDIDWSKV 87
>gi|7208223|gb|AAF40116.1|AF176324_1 truncated small nuclear ribonucleoprotein B' [Macropus eugenii]
Length = 67
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 7/58 (12%)
Query: 15 SAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
+ G +K HI RM ++DGR F+G+F DK N+IL D E+R +
Sbjct: 2 TVGKSSKMLQHIDY-------RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 52
>gi|443924956|gb|ELU43898.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 183
Score = 36.2 bits (82), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 20 TKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPS 77
TKG +S L+ R+ + + DGR G DK N++L D E+R ++++
Sbjct: 7 TKGGKMLS----LVNWRLKITLNDGRALTGQMLAFDKHMNLVLADCEEFRRVKSKKSDQG 62
Query: 78 PMEQ---RCLGIILIPSSCRTSCHVD 100
+EQ R LG+I++ S V+
Sbjct: 63 GVEQELKRTLGLIILRGETVVSISVE 88
>gi|409081623|gb|EKM81982.1| hypothetical protein AGABI1DRAFT_112159 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426196857|gb|EKV46785.1| hypothetical protein AGABI2DRAFT_136942 [Agaricus bisporus var.
bisporus H97]
Length = 178
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR-------RTSPSPMEQRCL 84
L+ R+ V I DGR G D+ N++L D E+R R T+P +R L
Sbjct: 14 LINWRLKVTINDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEETAPEQEMKRTL 73
Query: 85 GIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
G++++ R V S++ ++ D+
Sbjct: 74 GLVIL----RGETVVSISVEGPPPVVDEDK 99
>gi|145352933|ref|XP_001420788.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581023|gb|ABO99081.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 126
Score = 36.2 bits (82), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Query: 25 HISRVRKL---LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
H+S V L L +R+LV ++DG +G+ D+ NI+L+ AVE
Sbjct: 6 HLSAVASLVENLDKRLLVALRDGSNIIGTLRSFDQFANIVLESAVE 51
>gi|392589852|gb|EIW79182.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 178
Score = 36.2 bits (82), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR--------RTSPSPMEQRC 83
L+ R+ V I DGR F+G D+ N+++ + E+R R T P +R
Sbjct: 14 LINWRLKVTINDGRAFIGQMLAFDRHMNLVIAECEEFRRVRPKKKAGETETPPEQEMKRT 73
Query: 84 LGIILIPSSCRTSCHVD 100
LG++++ S V+
Sbjct: 74 LGLVILRGETVVSISVE 90
>gi|225463717|ref|XP_002263359.1| PREDICTED: small nuclear ribonucleoprotein-associated protein B'
[Vitis vinifera]
gi|147774905|emb|CAN61706.1| hypothetical protein VITISV_001610 [Vitis vinifera]
Length = 276
Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR----STRRTSPSPMEQR 82
S++ + + RM V I+DGR +G F D+ N++L D E+R + + + E+R
Sbjct: 7 SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNEEREERR 66
Query: 83 CLGIILI 89
LG++L+
Sbjct: 67 TLGLVLL 73
>gi|146091079|ref|XP_001466437.1| putative small nuclear ribonucleoprotein protein [Leishmania
infantum JPCM5]
gi|398017706|ref|XP_003862040.1| small nuclear ribonucleoprotein protein, putative [Leishmania
donovani]
gi|134070799|emb|CAM69157.1| putative small nuclear ribonucleoprotein protein [Leishmania
infantum JPCM5]
gi|322500268|emb|CBZ35346.1| small nuclear ribonucleoprotein protein, putative [Leishmania
donovani]
Length = 111
Score = 36.2 bits (82), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPSPMEQRC 83
+ + K+LC V + DGR G DK N++L DAVE R S + +R
Sbjct: 7 LHNINKVLC----VMLDDGRTVTGKLLVFDKHMNVVLGDAVEERPQSKKMAEEGVSPKRQ 62
Query: 84 LGIILI 89
LG+IL+
Sbjct: 63 LGLILL 68
>gi|448122802|ref|XP_004204535.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
gi|448125081|ref|XP_004205093.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
gi|358249726|emb|CCE72792.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
gi|358350074|emb|CCE73353.1| Piso0_000386 [Millerozyma farinosa CBS 7064]
Length = 122
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 10/68 (14%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR----------TSPSPMEQ 81
L+ R+ V D R F+G F DK N++L D E R T++ T+ E+
Sbjct: 4 LIHYRLRVNTIDNRDFVGQFLAFDKHMNLVLSDTEESRITKKSYQELKRTHNTNSIVEEK 63
Query: 82 RCLGIILI 89
R LG++++
Sbjct: 64 RSLGLVIL 71
>gi|224115254|ref|XP_002332199.1| predicted protein [Populus trichocarpa]
gi|222875306|gb|EEF12437.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 35.8 bits (81), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S++ + + RM V I+DGR +G F D+ N++L D E+R
Sbjct: 7 SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|256082565|ref|XP_002577525.1| solute carrier family 35 member C1 [Schistosoma mansoni]
gi|353232239|emb|CCD79594.1| putative solute carrier family 35 member C1 [Schistosoma mansoni]
Length = 617
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 31 KLLC-RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILI 89
K LC + + V + DGR ++G C D GNI++ EY + ++P + R ++I
Sbjct: 331 KCLCDQELTVDVSDGRRYIGFLCCTDNVGNIVMSSCTEYPAPSDSAPDNL-LRNFPTVVI 389
Query: 90 P 90
P
Sbjct: 390 P 390
>gi|224117856|ref|XP_002317685.1| predicted protein [Populus trichocarpa]
gi|222860750|gb|EEE98297.1| predicted protein [Populus trichocarpa]
Length = 250
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 38/68 (55%), Gaps = 5/68 (7%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR-----STRRTSPSPMEQ 81
S++ + + RM V I+DGR +G F D+ N++L D E+R ++ + ++
Sbjct: 7 SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKNNEEREDR 66
Query: 82 RCLGIILI 89
R LG++L+
Sbjct: 67 RTLGLVLL 74
>gi|384483289|gb|EIE75469.1| hypothetical protein RO3G_00173 [Rhizopus delemar RA 99-880]
Length = 202
Score = 35.8 bits (81), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS--PMEQ--- 81
S++ L+ R+ V + D R G DK N++L D E+R + + S P EQ
Sbjct: 7 SKMANLVNYRLRVTMSDSRVLTGQMLAFDKHMNLVLADCEEFRKVKSKAKSNNPTEQEMK 66
Query: 82 RCLGIILIPSSCRTSCHVDCSID 104
R LG++++ R + SID
Sbjct: 67 RTLGLVIL----RGETIISISID 85
>gi|256075617|ref|XP_002574114.1| small nuclear ribonucleoprotein-associated protein [Schistosoma
mansoni]
gi|353233403|emb|CCD80758.1| putative small nuclear ribonucleoprotein-associated protein
[Schistosoma mansoni]
Length = 199
Score = 35.8 bits (81), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP----MEQRCLGIILIPSSCRTS 96
++DGR +G+F D+ NIIL D E+R + + E+R LG++L+ +
Sbjct: 21 MQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKNKAAKQDKDRQEKRALGLVLLRGEHVVT 80
Query: 97 CHVD 100
+VD
Sbjct: 81 MNVD 84
>gi|327298535|ref|XP_003233961.1| hypothetical protein TERG_05830 [Trichophyton rubrum CBS 118892]
gi|326464139|gb|EGD89592.1| hypothetical protein TERG_05830 [Trichophyton rubrum CBS 118892]
Length = 113
Score = 35.8 bits (81), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 23/97 (23%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP---------- 78
+ L+ + + V D R F+G F C D N+IL EYR ++P+
Sbjct: 10 LESLVDKVLRVHTSDSRVFVGLFKCTDNDRNMILSTTHEYRCPTESAPAEQASAEETEGP 69
Query: 79 -------------MEQRCLGIILIPSSCRTSCHVDCS 102
M +R +G+++IP T +D S
Sbjct: 70 KTPCNEPLDFNTDMTRRFIGLVVIPGQHITKIELDKS 106
>gi|388582146|gb|EIM22452.1| RNA cap binding protein [Wallemia sebi CBS 633.66]
Length = 146
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
++MLV ++DGR +G D+ N++L DAVE
Sbjct: 19 KKMLVALRDGRKIIGVLRSFDQFANLVLNDAVE 51
>gi|340385838|ref|XP_003391415.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm1-like
[Amphimedon queenslandica]
Length = 151
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE-YRSTRRTSPSPMEQRCLGIILIPSSC 93
+R+LV ++ GR +G ID+ N++LQD VE ++ P GI L+
Sbjct: 33 KRILVVLRGGRTLIGYLRSIDQFANLLLQDTVERIHVGKKYGDIPR-----GIFLVRGEN 87
Query: 94 RTSC-HVDCSIDEQLSLLKV 112
C ++ S++E + L KV
Sbjct: 88 MVLCGEIEKSLEESMELEKV 107
>gi|270008314|gb|EFA04762.1| hypothetical protein TcasGA2_TC030631 [Tribolium castaneum]
Length = 214
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPSPMEQRCLGIILI 89
R+ + ++D R F+G+F DK N+IL D E+R + + E+R LG +L+
Sbjct: 16 RVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVEREEKRVLGFVLL 71
>gi|401424575|ref|XP_003876773.1| small nuclear ribonucleoprotein protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
gi|322493016|emb|CBZ28301.1| small nuclear ribonucleoprotein protein,putative [Leishmania
mexicana MHOM/GT/2001/U1103]
Length = 111
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPSPMEQRC 83
+ + K+LC V + DGR G DK N+IL DA+E R S + +R
Sbjct: 7 LHNINKVLC----VMLDDGRTVTGKLLVFDKHMNVILGDALEERPQSKKMAEEGVSSKRQ 62
Query: 84 LGIILI 89
LG+IL+
Sbjct: 63 LGLILL 68
>gi|118482995|gb|ABK93409.1| unknown [Populus trichocarpa]
Length = 286
Score = 35.8 bits (81), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
S++ + + RM V I+DGR +G F D+ N++L D E+R
Sbjct: 7 SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|168061084|ref|XP_001782521.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168061116|ref|XP_001782537.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168066445|ref|XP_001785148.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162663270|gb|EDQ50044.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666006|gb|EDQ52673.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666022|gb|EDQ52689.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 145
Score = 35.8 bits (81), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 26 ISRVRKLLC---RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
IS+ KLL RM V I+DGR +G F D+ N++L D E R
Sbjct: 3 ISKTSKLLLYINWRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEELR 49
>gi|91082993|ref|XP_974329.1| PREDICTED: similar to Small nuclear ribonucleoprotein-associated
protein B (snRNP-B) (Sm protein B) (Sm-B) (SmB)
[Tribolium castaneum]
Length = 212
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR--STRRTSPSPMEQRCLGIILI 89
R+ + ++D R F+G+F DK N+IL D E+R + + E+R LG +L+
Sbjct: 14 RVRITLQDSRTFIGTFKAFDKHMNMILGDCEEFRKIKPKNSKVEREEKRVLGFVLL 69
>gi|56759110|gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum]
gi|226468894|emb|CAX76475.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468896|emb|CAX76476.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468898|emb|CAX76477.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468900|emb|CAX76478.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468904|emb|CAX76480.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468906|emb|CAX76481.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226472872|emb|CAX71122.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 35.8 bits (81), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYR----STRRTSPSPMEQRCLGIILIPSSCRTS 96
++DGR +G+F D+ NIIL D E+R T + E+R LG++L+ +
Sbjct: 21 MQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDRQEKRALGLVLLRGEHVVT 80
Query: 97 CHVD 100
+VD
Sbjct: 81 MNVD 84
>gi|291396335|ref|XP_002714531.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B' isoform
1 [Oryctolagus cuniculus]
Length = 231
Score = 35.4 bits (80), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSSCRTSC 97
++DGR F+ +F DK N+IL D E+R + + E+R LG++L+ S
Sbjct: 21 LQDGRIFIATFKVFDKHVNLILCDCDEFRKIKPKNSKQAKREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|398364369|ref|NP_010946.3| Smb1p [Saccharomyces cerevisiae S288c]
gi|731447|sp|P40018.1|RSMB_YEAST RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|603621|gb|AAB64562.1| Yer029cp [Saccharomyces cerevisiae]
gi|45270790|gb|AAS56776.1| YER029C [Saccharomyces cerevisiae]
gi|151944739|gb|EDN62998.1| Sm B [Saccharomyces cerevisiae YJM789]
gi|190405591|gb|EDV08858.1| small nuclear ribonucleoprotein associated protein B
[Saccharomyces cerevisiae RM11-1a]
gi|207346002|gb|EDZ72630.1| YER029Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259145937|emb|CAY79197.1| Smb1p [Saccharomyces cerevisiae EC1118]
gi|285811654|tpg|DAA07682.1| TPA: Smb1p [Saccharomyces cerevisiae S288c]
gi|349577687|dbj|GAA22855.1| K7_Smb1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299719|gb|EIW10811.1| Smb1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 196
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
H SR+ L+ ++ V +DGR ++G DK N++L + +E R
Sbjct: 8 HSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEER 52
>gi|291396337|ref|XP_002714532.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B/B' isoform
2 [Oryctolagus cuniculus]
Length = 240
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSSCRTSC 97
++DGR F+ +F DK N+IL D E+R + + E+R LG++L+ S
Sbjct: 21 LQDGRIFIATFKVFDKHVNLILCDCDEFRKIKPKNSKQAKREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>gi|256271132|gb|EEU06225.1| Smb1p [Saccharomyces cerevisiae JAY291]
Length = 196
Score = 35.4 bits (80), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
H SR+ L+ ++ V +DGR ++G DK N++L + +E R
Sbjct: 8 HSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEER 52
>gi|356501499|ref|XP_003519562.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 282
Score = 35.4 bits (80), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS----PME-- 80
S++ + + RM V I+DGR +G F D+ N++L D E+ R+ P+ P E
Sbjct: 7 SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEF---RKLPPAKGKKPAEGA 63
Query: 81 ----QRCLGIILI 89
+R LG++L+
Sbjct: 64 DREDRRTLGLVLL 76
>gi|302415168|ref|XP_003005416.1| SMB [Verticillium albo-atrum VaMs.102]
gi|261356485|gb|EEY18913.1| SMB [Verticillium albo-atrum VaMs.102]
Length = 184
Score = 35.4 bits (80), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 14/68 (20%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--------------EQ 81
RM V + DGR G DK N++L D E+R +R P E+
Sbjct: 25 RMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPSAPGASGSGQTVESEEK 84
Query: 82 RCLGIILI 89
R LG+ ++
Sbjct: 85 RTLGLTIV 92
>gi|356553373|ref|XP_003545031.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Glycine max]
Length = 281
Score = 35.4 bits (80), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 13/73 (17%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPS----PME-- 80
S++ + + RM V I+DGR +G F D+ N++L D E+ R+ P+ P E
Sbjct: 7 SKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEF---RKLPPAKGKKPAEGG 63
Query: 81 ----QRCLGIILI 89
+R LG++L+
Sbjct: 64 DREDRRTLGLVLL 76
>gi|453089025|gb|EMF17065.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 155
Score = 35.4 bits (80), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
++++V ++DGR +G D+ GN++LQD VE
Sbjct: 37 KKLMVALRDGRKLIGVLRSWDQFGNLVLQDTVE 69
>gi|224004408|ref|XP_002295855.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209585887|gb|ACI64572.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 109
Score = 35.4 bits (80), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILI 89
L +RMLV ++DGR +G+ D+ N++L+D E R T+ LG+ ++
Sbjct: 13 LDQRMLVVLRDGRHLVGTLRTFDQFANMVLEDTSERRILGETTTCYQADVKLGLYVV 69
>gi|320587516|gb|EFW99996.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 203
Score = 35.4 bits (80), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 31 KLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR 73
K++ RM V + DGR G DK N++L D E+R RR
Sbjct: 8 KMINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRIRR 50
>gi|340376043|ref|XP_003386543.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm1-like
[Amphimedon queenslandica]
Length = 151
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE-YRSTRRTSPSPMEQRCLGIILIPSSC 93
+R+LV ++ GR +G ID+ N++LQD VE ++ P GI L+
Sbjct: 33 KRILVVLRGGRTLIGYLRSIDQFANLLLQDTVERIHVGKKYGDIPR-----GIFLVRGEN 87
Query: 94 RTSC-HVDCSIDEQLSLLKV 112
C ++ S++E + L KV
Sbjct: 88 MVLCGEIEKSLEESMELEKV 107
>gi|295442813|ref|NP_595273.2| NatC N-acetyltransferase non catalytic Sm-like domain subunit Naa38
(predicted) [Schizosaccharomyces pombe 972h-]
gi|259016433|sp|O43080.2|YHS3_SCHPO RecName: Full=Uncharacterized protein C947.03c
gi|254745574|emb|CAA17031.2| NatC N-acetyltransferase non catalytic Sm-like domain subunit Naa38
(predicted) [Schizosaccharomyces pombe]
Length = 116
Score = 35.4 bits (80), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
L R + + I D R F+G F C D++G IL + EY R LG+++IP
Sbjct: 56 LNRSVHIEIFDERKFIGKFLCTDREGAAILSNTTEYNKGF--------SRALGLVVIP 105
>gi|346977199|gb|EGY20651.1| SMB protein [Verticillium dahliae VdLs.17]
Length = 220
Score = 35.4 bits (80), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 14/78 (17%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM------ 79
I R + RM V + DGR G DK N++L D E+R +R P
Sbjct: 15 IFRPATYINYRMRVTLNDGRQMTGQMLAFDKHMNLVLADTEEFRRVKRKQNKPSAPGASG 74
Query: 80 --------EQRCLGIILI 89
E+R LG+ ++
Sbjct: 75 SGQTVESEEKRTLGLTIV 92
>gi|384247810|gb|EIE21296.1| hypothetical protein COCSUDRAFT_83520 [Coccomyxa subellipsoidea
C-169]
Length = 270
Score = 35.0 bits (79), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR----RTSPSP 78
+S+ KLL RM V + D R +G F D+ N++L DA E+R RT
Sbjct: 3 VSKTSKLLNYINYRMRVTLIDSRHIVGRFMAFDRHMNLVLGDAEEFRKLPPKKGRTEEER 62
Query: 79 MEQRCLGIILI 89
++R LG++L+
Sbjct: 63 DQRRVLGLVLL 73
>gi|294910891|ref|XP_002777961.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Perkinsus marinus ATCC 50983]
gi|239886025|gb|EER09756.1| Small nuclear ribonucleoprotein-associated protein B, putative
[Perkinsus marinus ATCC 50983]
Length = 167
Score = 35.0 bits (79), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPME-QRCLG 85
+++++ L R+ V + D R +G F DK N++L D E+R + + E +R LG
Sbjct: 8 TKMQQWLNYRVRVTLHDERIMIGQFMAFDKHMNLVLADTEEFRKVALITTTEREVKRMLG 67
Query: 86 IILI 89
++++
Sbjct: 68 LLIL 71
>gi|116283909|gb|AAH48499.1| Lsmd1 protein [Mus musculus]
gi|149053043|gb|EDM04860.1| similar to hypothetical protein MGC14151 (predicted), isoform
CRA_a [Rattus norvegicus]
gi|149053045|gb|EDM04862.1| similar to hypothetical protein MGC14151 (predicted), isoform
CRA_a [Rattus norvegicus]
gi|149053046|gb|EDM04863.1| similar to hypothetical protein MGC14151 (predicted), isoform
CRA_a [Rattus norvegicus]
Length = 73
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 37 MLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPS 91
M + + DGR +G F C D+ N+IL A E+ S S E R LG+ ++P
Sbjct: 1 MRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSAGEPRVLGLAMVPG 54
>gi|392577898|gb|EIW71026.1| hypothetical protein TREMEDRAFT_27133 [Tremella mesenterica DSM
1558]
Length = 113
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRT--------SPSPMEQRC 83
L+ R+ V + DGR +G DK N +L + E+R+ + T +P+ ++R
Sbjct: 4 LINYRLKVVLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKVTKDAPPNEPTPTVQQKRT 63
Query: 84 LGIILI 89
LG++++
Sbjct: 64 LGLVIL 69
>gi|226468890|emb|CAX76473.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468902|emb|CAX76479.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 35.0 bits (79), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYR----STRRTSPSPMEQRCLGIILIPSSCRTS 96
++DGR +G+F D+ NIIL D E+R T + E+R LG++L+ +
Sbjct: 21 MQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDRQEKRSLGLVLLRGEHVVT 80
Query: 97 CHVD 100
+VD
Sbjct: 81 MNVD 84
>gi|323333917|gb|EGA75306.1| Smb1p [Saccharomyces cerevisiae AWRI796]
Length = 112
Score = 35.0 bits (79), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
H SR+ L+ ++ V +DGR ++G DK N++L + +E R
Sbjct: 8 HSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEER 52
>gi|169849793|ref|XP_001831595.1| SMB [Coprinopsis cinerea okayama7#130]
gi|116507233|gb|EAU90128.1| SMB [Coprinopsis cinerea okayama7#130]
Length = 168
Score = 35.0 bits (79), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 7/82 (8%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR-------RTSPSPMEQRCL 84
L+ R+ V I+DGR G D+ N++L D E+R R +P +R L
Sbjct: 4 LINWRLKVTIQDGRALTGQMLAFDRHMNLVLADCEEFRRVRPKKKAGEEVAPEQELKRTL 63
Query: 85 GIILIPSSCRTSCHVDCSIDEQ 106
G++++ S V+ Q
Sbjct: 64 GLVILRGEAVVSISVEGPPPVQ 85
>gi|302501682|ref|XP_003012833.1| hypothetical protein ARB_01084 [Arthroderma benhamiae CBS 112371]
gi|291176393|gb|EFE32193.1| hypothetical protein ARB_01084 [Arthroderma benhamiae CBS 112371]
Length = 192
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 16/80 (20%)
Query: 37 MLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR------------TSPSPM----E 80
M V + DGR G DK N++L D E+R ++ +S +P+ E
Sbjct: 1 MRVTLTDGRQMTGQMLAFDKHMNLVLADTEEFRRVKKKSGKGGQAAPGSSSTTPLVEAEE 60
Query: 81 QRCLGIILIPSSCRTSCHVD 100
+R LG+ ++ + SC VD
Sbjct: 61 KRTLGLTIVRGTHVVSCSVD 80
>gi|255578055|ref|XP_002529898.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530625|gb|EEF32501.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 35.0 bits (79), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
RM V I+DGR +G F D+ N++L D E+R
Sbjct: 16 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|380093645|emb|CCC08609.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 253
Score = 35.0 bits (79), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 37 MLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR 73
M V + DGR G DK N++L DA E+R +R
Sbjct: 1 MRVTLNDGRQMTGQMLAFDKHMNLVLADAEEFRRIKR 37
>gi|358341144|dbj|GAA48892.1| small nuclear ribonucleoprotein B and B' [Clonorchis sinensis]
Length = 178
Score = 35.0 bits (79), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR----RTSPSPMEQRCLGIILIPSSCRTS 96
++DGR +G+F D+ N++L D E+R + + E+R LG++L+ S
Sbjct: 1 MQDGRQLVGTFKAFDRHMNLVLCDCDEFRHVKVKGSKQEKEKQEKRALGLVLLRGEHVVS 60
Query: 97 CHVD 100
+VD
Sbjct: 61 VNVD 64
>gi|167395842|ref|XP_001741779.1| small nuclear ribonucleoprotein-associated protein B [Entamoeba
dispar SAW760]
gi|165893541|gb|EDR21755.1| small nuclear ribonucleoprotein-associated protein B, putative
[Entamoeba dispar SAW760]
Length = 205
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS--TRRTSPSPMEQRCL 84
S++ K + + V +GR F+G F DK N+IL + +E R+ ++T +R L
Sbjct: 6 SKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVMNKKTREEKEIERSL 65
Query: 85 GIILIPSSC 93
G++L+ C
Sbjct: 66 GLMLLRGDC 74
>gi|226468892|emb|CAX76474.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 231
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR----STRRTSPSPMEQR 82
+++ + + R+ ++DGR +G+F D+ NIIL D E+R T + E+R
Sbjct: 7 AKISQHVNYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDRQEKR 66
Query: 83 CLGIILI 89
LG++L+
Sbjct: 67 SLGLVLL 73
>gi|255578051|ref|XP_002529896.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
gi|223530623|gb|EEF32499.1| small nuclear ribonucleoprotein-associated protein, putative
[Ricinus communis]
Length = 275
Score = 34.7 bits (78), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
RM V I+DGR +G F D+ N++L D E+R
Sbjct: 16 RMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFR 49
>gi|328867402|gb|EGG15785.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 84
Score = 34.7 bits (78), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILI 89
++++V ++DG+ F+G D+ NIILQD VE R + + LG+ I
Sbjct: 14 KKLIVVLRDGKKFIGVMRTFDQFANIILQDTVE----RIYVGNCYSDKYLGVFFI 64
>gi|401839459|gb|EJT42681.1| SMB1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 196
Score = 34.7 bits (78), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
H SR+ L+ ++ V +DGR ++G DK N++L + +E R
Sbjct: 8 HGSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEER 52
>gi|58260056|ref|XP_567438.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134116264|ref|XP_773086.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255707|gb|EAL18439.1| hypothetical protein CNBJ0810 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229488|gb|AAW45921.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 195
Score = 34.7 bits (78), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---------STRRTSPSPMEQR 82
LL R+ V + DGR +G DK N +L + E+R S+ +P+ ++R
Sbjct: 4 LLHYRLKVTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKGKKAKASSNEPAPTTQQKR 63
Query: 83 CLGIILI 89
LG++++
Sbjct: 64 TLGLVIL 70
>gi|321262987|ref|XP_003196212.1| hypothetical Protein CGB_I3560W [Cryptococcus gattii WM276]
gi|317462687|gb|ADV24425.1| conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 197
Score = 34.7 bits (78), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR---------STRRTSPSPMEQR 82
LL R+ V + DGR +G DK N +L + E+R S+ +P+ ++R
Sbjct: 4 LLHYRLKVTLNDGRSLVGQMLAYDKHMNFVLAECEEFRTVKAKKAKGSSSEPAPTTQQKR 63
Query: 83 CLGIILI 89
LG++++
Sbjct: 64 TLGLVIL 70
>gi|345316084|ref|XP_001519203.2| PREDICTED: hypothetical protein LOC100089922 [Ornithorhynchus
anatinus]
Length = 197
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
S++ + + RM ++DGR F+G+F DK N+IL D E+R +
Sbjct: 152 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIK 197
>gi|145345876|ref|XP_001417425.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577652|gb|ABO95718.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 145
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 26 ISRVRKLLC---RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
+SR K+L R+ V + DGR +G+F D+ N++L D E+R
Sbjct: 3 VSRTSKMLAFINHRVRVTLVDGRALVGTFTAFDRHVNVVLSDCEEHR 49
>gi|308505924|ref|XP_003115145.1| CRE-SNR-2 protein [Caenorhabditis remanei]
gi|308259327|gb|EFP03280.1| CRE-SNR-2 protein [Caenorhabditis remanei]
Length = 178
Score = 34.7 bits (78), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
IS+ K++ RM + ++DGR F+G F DK NI+L + E+R +
Sbjct: 3 ISKNNKMMAHLNYRMKIILQDGRTFVGFFKAFDKHMNILLAECEEHRQIK 52
>gi|393222057|gb|EJD07541.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 183
Score = 34.7 bits (78), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 16/103 (15%)
Query: 20 TKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR------R 73
+KG +S L+ R+ + + DGR G D+ N++L D E+R R
Sbjct: 6 SKGGKMLS----LINWRLKITLNDGRALTGQMLAFDRHMNLVLADCEEFRRVRAKKKAGE 61
Query: 74 TSPSPMEQ--RCLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114
P+P ++ R LG++++ R V S++ ++ D+
Sbjct: 62 EGPAPEQEIKRSLGLVIL----RGESVVSLSVEGPPPVVDEDK 100
>gi|330842218|ref|XP_003293079.1| hypothetical protein DICPUDRAFT_157882 [Dictyostelium purpureum]
gi|325076610|gb|EGC30382.1| hypothetical protein DICPUDRAFT_157882 [Dictyostelium purpureum]
Length = 131
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
++++V ++DGR F+G D+ NI+LQD +E
Sbjct: 13 KKLIVVLRDGRKFIGMMRTFDQFANIVLQDTIE 45
>gi|84995270|ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
gi|65302518|emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
Length = 155
Score = 34.7 bits (78), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST-----RRTSPSPMEQ 81
+R++ L + V +KD R F+G+ DK N++L D E+R T RT +
Sbjct: 6 TRMQHWLQYNVRVTLKDNRKFVGTLVAFDKYMNLVLSDCEEFRMTLGKDKNRTE----VK 61
Query: 82 RCLGIILI 89
R LG +L+
Sbjct: 62 RTLGFVLL 69
>gi|365761028|gb|EHN02704.1| Smb1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 112
Score = 34.7 bits (78), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
H SR+ L+ ++ V +DGR ++G DK N++L + +E R
Sbjct: 8 HGSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEER 52
>gi|66814660|ref|XP_641509.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74856091|sp|Q54W83.1|LSM1_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm1
gi|60469541|gb|EAL67532.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 129
Score = 34.7 bits (78), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
++++V ++DGR F+G D+ NI+LQD +E
Sbjct: 11 KKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE 43
>gi|298714462|emb|CBJ27484.1| Small nuclear ribonucleoprotein-associated protein B [Ectocarpus
siliculosus]
Length = 217
Score = 34.7 bits (78), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM------- 79
S++ + + RM + I DGR +G+ D+ N++L D EYR + S
Sbjct: 7 SKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGSEAAAGIHEE 66
Query: 80 --EQRCLGIILI 89
E+R LG++L+
Sbjct: 67 REEKRVLGLVLL 78
>gi|71030572|ref|XP_764928.1| small nuclear ribonucleoprotein B [Theileria parva strain Muguga]
gi|68351884|gb|EAN32645.1| small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 155
Score = 34.3 bits (77), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRST-----RRTSPSPMEQ 81
+R++ L + V +KD R F+G+ DK N++L D E+R T RT +
Sbjct: 6 TRMQHWLQYNVRVTLKDNRKFVGTLVAYDKYMNLVLSDCEEFRMTLGKDKNRTE----VK 61
Query: 82 RCLGIILI 89
R LG +L+
Sbjct: 62 RTLGFVLL 69
>gi|328856685|gb|EGG05805.1| hypothetical protein MELLADRAFT_36483 [Melampsora larici-populina
98AG31]
Length = 152
Score = 34.3 bits (77), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
++ +++LV ++DGR +G D+ N++LQDA+E
Sbjct: 19 IVDKKILVSLRDGRSLIGVLRSYDQFANLVLQDAIE 54
>gi|326482850|gb|EGE06860.1| hypothetical protein TEQG_08743 [Trichophyton equinum CBS 127.97]
Length = 113
Score = 34.3 bits (77), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 23/95 (24%)
Query: 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP---------- 78
+ L+ + + V D R F+G F C D N+IL EYR +P+
Sbjct: 10 LESLVDKVLRVHTSDSRVFVGLFKCTDNDRNMILSTTHEYRCPTERAPAEQASSEEMEGP 69
Query: 79 -------------MEQRCLGIILIPSSCRTSCHVD 100
M +R +G+++IP T +D
Sbjct: 70 KAACNAPLDLNTDMSRRFIGLVVIPGQHITKIELD 104
>gi|296222281|ref|XP_002757118.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Callithrix jacchus]
Length = 240
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
++DG+ F+G+F DK N+IL D E+R + + E+R LG+ L+
Sbjct: 21 LQDGQIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEKEEKRVLGLALL 72
>gi|19115063|ref|NP_594151.1| Sm snRNP core protein Smb1 [Schizosaccharomyces pombe 972h-]
gi|1723236|sp|Q10163.1|RSMB_SCHPO RecName: Full=Small nuclear ribonucleoprotein-associated protein
B; Short=snRNP-B; AltName: Full=Sm protein B;
Short=Sm-B; Short=SmB
gi|1177355|emb|CAA93231.1| Sm snRNP core protein Smb1 [Schizosaccharomyces pombe]
Length = 147
Score = 34.3 bits (77), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-PSPM---EQR 82
+++ LL + V KDGR F+G D N++L D EYR ++ + PS E+R
Sbjct: 4 TKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKR 63
Query: 83 CLGIILI 89
LG++++
Sbjct: 64 MLGLVIL 70
>gi|67475017|ref|XP_653239.1| small nuclear ribonucleoprotein F [Entamoeba histolytica
HM-1:IMSS]
gi|56470172|gb|EAL47852.1| small nuclear ribonucleoprotein F, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449707860|gb|EMD47439.1| LSM domain containing protein [Entamoeba histolytica KU27]
Length = 205
Score = 34.3 bits (77), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRS--TRRTSPSPMEQRCL 84
S++ K + + V +GR F+G F DK N+IL + +E R+ ++T +R L
Sbjct: 6 SKISKYINYTIKVTTIEGRNFVGKFLAFDKYMNMILSETIEKRTVINKKTREEKEIERSL 65
Query: 85 GIILIPSSC 93
G++L+ C
Sbjct: 66 GMMLLRGDC 74
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,586,987,468
Number of Sequences: 23463169
Number of extensions: 56069903
Number of successful extensions: 92741
Number of sequences better than 100.0: 589
Number of HSP's better than 100.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 172
Number of HSP's that attempted gapping in prelim test: 92265
Number of HSP's gapped (non-prelim): 591
length of query: 114
length of database: 8,064,228,071
effective HSP length: 81
effective length of query: 33
effective length of database: 6,163,711,382
effective search space: 203402475606
effective search space used: 203402475606
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 69 (31.2 bits)