BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033666
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55A45|RSMB_DICDI Small nuclear ribonucleoprotein-associated protein B
OS=Dictyostelium discoideum GN=snrpb PE=3 SV=1
Length = 274
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQ-RCLG 85
S++ + + RM V I+DGR +G F DK N+++ DA E+R R+ E+ R LG
Sbjct: 8 SKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLG 67
Query: 86 IILIPSSCRTSCHVDCSIDEQLSL 109
+ILI S V+ E+ L
Sbjct: 68 MILIRGETVVSMSVEAPPPEEAKL 91
>sp|Q6GQ67|LMD1A_XENLA LSM domain-containing protein 1-A OS=Xenopus laevis GN=lsmd1-a PE=3
SV=1
Length = 113
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 14 SSAGSDTK-GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTR 72
S+ SD + G ++ LL R M + + DGR +G F C D+ N+IL A E+
Sbjct: 17 SAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPS 76
Query: 73 RTSPSPMEQRCLGIILIPSSCRTSCHVD 100
+ P E R LG+ ++P S V+
Sbjct: 77 DSFPV-REPRVLGLAMVPGHHIVSIQVE 103
>sp|A2BIG9|LSMD1_DANRE LSM domain-containing protein 1 OS=Danio rerio GN=lsmd1 PE=2 SV=1
Length = 109
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEY-RSTRRTSPSPMEQRCLGI 86
++ LL + M + + DGR +G F C D+ N+IL A E+ +ST S S E R LG+
Sbjct: 27 KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKST--DSLSQGEPRVLGL 84
Query: 87 ILIPSSCRTSCHVD 100
+IP S V+
Sbjct: 85 AMIPGHHVVSIEVE 98
>sp|A4IGZ4|LSMD1_XENTR LSM domain-containing protein 1 OS=Xenopus tropicalis GN=lsmd1 PE=3
SV=2
Length = 113
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGII 87
++ LL R M + + DGR +G F C D+ N+IL A E+ + P E R LG+
Sbjct: 32 KLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFPV-REPRVLGLA 90
Query: 88 LIPSSCRTSCHVD 100
++P S V+
Sbjct: 91 MVPGHHIVSIQVE 103
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein-associated protein B' OS=Gallus
gallus GN=SNRPB PE=2 SV=1
Length = 240
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 6/81 (7%)
Query: 26 ISRVRKLLCR---RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM--- 79
IS+ K++ RM + ++DGR F+G F DK NI+L + E+R + +
Sbjct: 3 ISKNNKMMAHLNYRMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGE 62
Query: 80 EQRCLGIILIPSSCRTSCHVD 100
E+R LG++L+ S VD
Sbjct: 63 EKRILGLVLVRGEHIVSMTVD 83
>sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein-associated protein N OS=Rattus
norvegicus GN=Snrpn PE=2 SV=1
Length = 240
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|Q5R6I0|RSMN_PONAB Small nuclear ribonucleoprotein-associated protein N OS=Pongo
abelii GN=SNRPN PE=2 SV=1
Length = 240
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein-associated protein N OS=Mus
musculus GN=Snrpn PE=2 SV=1
Length = 240
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|Q60HD3|RSMN_MACFA Small nuclear ribonucleoprotein-associated protein N OS=Macaca
fascicularis GN=SNRPN PE=2 SV=1
Length = 240
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein-associated protein N OS=Homo
sapiens GN=SNRPN PE=1 SV=1
Length = 240
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|Q17QN3|RSMN_BOVIN Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus
GN=SNRPN PE=2 SV=1
Length = 240
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + P E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKVD 113
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARVP 96
>sp|Q6NU60|LMD1B_XENLA LSM domain-containing protein 1-B OS=Xenopus laevis GN=lsmd1-b PE=3
SV=1
Length = 111
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 1 MEQKVETTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNI 60
+E+ TE+ ++ G ++ LL R M + + DGR +G F C D+ N+
Sbjct: 5 LEENGYITESCPRTADSDVESGDTARHKLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNV 64
Query: 61 ILQDAVEYRSTRRTSPS--PMEQRCLGIILIPSSCRTSCHVDCSIDEQ 106
IL A E+ R S S E R LG+ ++P S V+ Q
Sbjct: 65 ILGSAQEF---LRPSDSFRIREPRVLGLAMVPGHHIVSIQVELETSPQ 109
>sp|Q9D2U5|LSMD1_MOUSE LSM domain-containing protein 1 OS=Mus musculus GN=Lsmd1 PE=2 SV=1
Length = 125
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ + ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSPATRARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein-associated proteins B and B'
OS=Homo sapiens GN=SNRPB PE=1 SV=2
Length = 240
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein-associated protein B' OS=Erinaceus
europaeus GN=SNRPB PE=2 SV=1
Length = 240
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein-associated protein B'
OS=Monodelphis domestica GN=SNRPB PE=2 SV=1
Length = 240
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILI 89
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLL 72
>sp|Q58DW4|RSMB_BOVIN Small nuclear ribonucleoprotein-associated protein B' OS=Bos taurus
GN=SNRPB PE=2 SV=1
Length = 240
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILI 89
L R+ + ++D R F+G+F DK N+IL D E+R R + P E+R LG +L+
Sbjct: 13 LNYRVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLL 72
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein-associated protein B OS=Mus
musculus GN=Snrpb PE=1 SV=1
Length = 231
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 36 RMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSS 92
RM ++DGR F+G+F DK N+IL D E+R + + E+R LG++L+
Sbjct: 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGE 75
Query: 93 CRTSCHVDCSIDEQLSLLKV 112
S V+ + + +V
Sbjct: 76 NLVSMTVEGPPPKDTGIARV 95
>sp|Q9BRA0|LSMD1_HUMAN LSM domain-containing protein 1 OS=Homo sapiens GN=LSMD1 PE=1 SV=1
Length = 125
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 19 DTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSP 78
D+ ++ LL + M + + DGR +G F C D+ N+IL A E+ S S
Sbjct: 35 DSAAERARQQLEALLNKTMRIRMTDGRTLVGCFLCTDRDCNVILGSAQEFLKP-SDSFSA 93
Query: 79 MEQRCLGIILIPS 91
E R LG+ ++P
Sbjct: 94 GEPRVLGLAMVPG 106
>sp|Q9N1Q0|RSMB_MACEU Small nuclear ribonucleoprotein-associated protein B' OS=Macropus
eugenii GN=SNRPB PE=2 SV=1
Length = 240
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSSCRTSC 97
++DGR F+G+F DK N+IL D E+R + + E+R LG++L+ S
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 80
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 81 TVEGPPPKDTGIARV 95
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein-associated protein B (Fragment)
OS=Rattus norvegicus GN=Snrpb PE=2 SV=1
Length = 214
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 41 IKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPM---EQRCLGIILIPSSCRTSC 97
+++GR F+G+F DK N+IL D E+R + + E+R LG++L+ S
Sbjct: 4 LQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 63
Query: 98 HVDCSIDEQLSLLKV 112
V+ + + +V
Sbjct: 64 TVEGPPPKDTGIARV 78
>sp|P40018|RSMB_YEAST Small nuclear ribonucleoprotein-associated protein B
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SMB1 PE=1 SV=1
Length = 196
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69
H SR+ L+ ++ V +DGR ++G DK N++L + +E R
Sbjct: 8 HSSRLANLIDYKLRVLTQDGRVYIGQLMAFDKHMNLVLNECIEER 52
>sp|O43080|YHS3_SCHPO Uncharacterized protein C947.03c OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPBC947.03c PE=4 SV=2
Length = 116
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 8/58 (13%)
Query: 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIP 90
L R + + I D R F+G F C D++G IL + EY R LG+++IP
Sbjct: 56 LNRSVHIEIFDERKFIGKFLCTDREGAAILSNTTEYNKGF--------SRALGLVVIP 105
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
++++V ++DGR F+G D+ NI+LQD +E
Sbjct: 11 KKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIE 43
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILI 89
R++ V ++DGR G D+ N+ILQD VE + E R GI +I
Sbjct: 52 RKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDR--GIFMI 104
>sp|Q10163|RSMB_SCHPO Small nuclear ribonucleoprotein-associated protein B
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=smb1 PE=1 SV=1
Length = 147
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS-PSPM---EQR 82
+++ LL + V KDGR F+G D N++L D EYR ++ + PS E+R
Sbjct: 4 TKMVSLLNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKR 63
Query: 83 CLGIILI 89
LG++++
Sbjct: 64 MLGLVIL 70
>sp|Q6NGX4|RUVA_CORDI Holliday junction ATP-dependent DNA helicase RuvA
OS=Corynebacterium diphtheriae (strain ATCC 700971 /
NCTC 13129 / Biotype gravis) GN=ruvA PE=3 SV=1
Length = 203
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 21/41 (51%)
Query: 3 QKVETTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGIKD 43
Q V TTE + AG D K I V K + RM+V +KD
Sbjct: 89 QSVFTTEDIARHIAGGDAKALQKIPGVGKRMAERMIVDLKD 129
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67
H V+K + +RM++ + GR G D N++L D VE
Sbjct: 5 HPPEVKKYMDKRMMLKLNGGRAVTGILRGFDPFMNVVLDDTVE 47
>sp|Q8N4T4|ARG39_HUMAN Rho guanine nucleotide exchange factor 39 OS=Homo sapiens
GN=ARHGEF39 PE=2 SV=1
Length = 335
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 17 GSDTKGSNHISRVRKLLCRRMLVGIKDGRFFL 48
G K H+ RV+ LL R G+ GR+FL
Sbjct: 198 GQKQKNDQHLRRVQALLSGRQAKGLTSGRWFL 229
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLG 85
++ + L +++LV DGR +G+ ID+ N++L+ E R S +E LG
Sbjct: 1 MAMLESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHE----RVYSDEGIEVIPLG 56
Query: 86 IILIPS-SCRTSCHVDCSIDEQLSL 109
+ LI VD +D++L+L
Sbjct: 57 VHLIKGDDVAVIGEVDDELDKKLNL 81
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,395,575
Number of Sequences: 539616
Number of extensions: 1387091
Number of successful extensions: 2459
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2428
Number of HSP's gapped (non-prelim): 32
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)