Query 033666
Match_columns 114
No_of_seqs 120 out of 1060
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:42:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033666.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033666hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_C U6 snRNA-associated SM- 99.9 8.3E-24 2.8E-28 147.3 9.9 90 16-105 15-104 (113)
2 3bw1_A SMX4 protein, U6 snRNA- 99.9 2.8E-23 9.7E-28 140.5 9.1 78 23-100 9-86 (96)
3 1d3b_B Protein (small nuclear 99.9 3.3E-23 1.1E-27 138.2 7.3 80 25-104 5-87 (91)
4 3pgw_B SM B; protein-RNA compl 99.9 4.9E-22 1.7E-26 152.8 10.8 82 24-105 4-88 (231)
5 1h64_1 SnRNP SM-like protein; 99.9 1E-21 3.5E-26 126.8 9.8 70 23-99 3-72 (75)
6 4emk_A U6 snRNA-associated SM- 99.9 2E-21 6.8E-26 131.5 11.3 81 17-103 11-93 (94)
7 1mgq_A SM-like protein; LSM, R 99.9 1.3E-21 4.4E-26 128.9 10.1 75 17-98 8-82 (83)
8 2fwk_A U6 snRNA-associated SM- 99.9 3.1E-22 1.1E-26 140.4 6.9 85 21-105 25-117 (121)
9 1i4k_A Putative snRNP SM-like 99.9 1.6E-21 5.5E-26 126.3 9.8 72 23-101 3-74 (77)
10 3s6n_G Small nuclear ribonucle 99.9 6.5E-22 2.2E-26 128.4 7.3 68 25-99 5-72 (76)
11 4emg_A Probable U6 snRNA-assoc 99.9 1.8E-21 6.2E-26 131.1 9.7 77 23-99 8-90 (93)
12 1th7_A SnRNP-2, small nuclear 99.9 3.4E-21 1.2E-25 126.2 10.6 71 23-100 8-78 (81)
13 1i8f_A Putative snRNP SM-like 99.9 3.9E-21 1.3E-25 126.0 9.7 70 22-99 9-78 (81)
14 4emk_B U6 snRNA-associated SM- 99.8 3.4E-21 1.2E-25 124.7 8.0 70 23-99 3-72 (75)
15 1ljo_A Archaeal SM-like protei 99.8 8.4E-21 2.9E-25 123.1 9.8 69 24-99 5-74 (77)
16 3s6n_F Small nuclear ribonucle 99.8 6.2E-21 2.1E-25 126.7 8.9 76 23-105 5-80 (86)
17 1n9r_A SMF, small nuclear ribo 99.8 3.8E-21 1.3E-25 129.6 7.2 80 13-99 10-90 (93)
18 3s6n_E Small nuclear ribonucle 99.8 2.3E-20 7.7E-25 125.7 7.6 71 23-99 15-89 (92)
19 1b34_B Protein (small nuclear 99.8 6.8E-20 2.3E-24 127.9 9.0 82 19-100 22-112 (118)
20 1d3b_A Protein (small nuclear 99.8 2.4E-19 8.1E-24 116.2 10.1 70 23-99 4-73 (75)
21 4emh_A Probable U6 snRNA-assoc 99.8 9.7E-20 3.3E-24 125.3 8.5 76 17-100 11-86 (105)
22 1b34_A Protein (small nuclear 99.8 8.7E-19 3E-23 122.6 9.5 72 24-102 2-73 (119)
23 2y9a_D Small nuclear ribonucle 99.7 1.5E-17 5.2E-22 117.6 8.9 72 23-101 4-75 (126)
24 1m5q_A SMAP3, small nuclear ri 99.7 9.6E-18 3.3E-22 119.2 7.4 66 26-102 2-67 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.1 6.4E-10 2.2E-14 74.0 7.7 67 27-106 10-77 (86)
26 2fb7_A SM-like protein, LSM-14 96.6 0.006 2.1E-07 40.9 6.3 78 26-103 11-91 (95)
27 2vxe_A CG10686-PA; EDC3, CAR-1 96.6 0.031 1E-06 36.9 9.4 71 31-101 10-83 (88)
28 4a53_A EDC3; RNA binding prote 96.0 0.011 3.7E-07 41.4 4.9 36 29-65 7-44 (125)
29 1y96_B Gemin7, SIP3, GEM-assoc 95.5 0.051 1.8E-06 35.6 6.6 63 26-100 21-84 (85)
30 3ahu_A Protein HFQ; SM-like mo 94.8 0.073 2.5E-06 34.3 5.5 41 23-63 10-52 (78)
31 3hfo_A SSR3341 protein; HFQ, S 94.0 0.14 4.9E-06 32.3 5.5 42 19-61 5-48 (70)
32 2vc8_A Enhancer of mRNA-decapp 93.8 0.12 4E-06 33.8 4.9 64 30-103 5-70 (84)
33 1kq1_A HFQ, HOST factor for Q 93.7 0.26 9E-06 31.5 6.5 40 26-65 9-50 (77)
34 2ylb_A Protein HFQ; RNA-bindin 93.6 0.14 4.9E-06 32.5 5.0 38 24-61 9-48 (74)
35 3hfn_A ASL2047 protein; HFQ, S 93.4 0.13 4.6E-06 32.6 4.6 44 17-61 5-50 (72)
36 1ib8_A Conserved protein SP14. 93.0 0.25 8.4E-06 35.4 6.1 54 7-62 78-135 (164)
37 2qtx_A Uncharacterized protein 92.9 0.33 1.1E-05 30.7 5.9 35 33-67 24-58 (71)
38 3sb2_A Protein HFQ; SM-like, R 92.7 0.15 5.1E-06 33.0 4.1 38 24-61 8-47 (79)
39 1ycy_A Conserved hypothetical 92.6 0.23 8E-06 31.1 4.7 43 26-69 8-50 (71)
40 3rux_A BIRA bifunctional prote 92.0 0.19 6.6E-06 38.4 4.7 36 32-67 222-257 (270)
41 1u1s_A HFQ protein; SM-like ba 91.4 0.3 1E-05 31.7 4.4 37 26-62 9-47 (82)
42 2y90_A Protein HFQ; RNA-bindin 91.3 0.33 1.1E-05 32.9 4.7 39 24-62 9-49 (104)
43 1bia_A BIRA bifunctional prote 84.9 1.6 5.3E-05 33.7 5.4 33 32-65 271-303 (321)
44 2ej9_A Putative biotin ligase; 84.3 1.3 4.5E-05 32.9 4.6 32 32-64 190-221 (237)
45 2rm4_A CG6311-PB, DM EDC3; enh 83.2 4 0.00014 27.3 6.1 65 30-103 8-73 (103)
46 2eay_A Biotin [acetyl-COA-carb 83.0 0.72 2.5E-05 34.3 2.7 32 32-65 186-217 (233)
47 2xk0_A Polycomb protein PCL; t 80.3 4.6 0.00016 25.3 5.2 42 29-70 14-56 (69)
48 2dxu_A Biotin--[acetyl-COA-car 80.3 1.4 4.6E-05 32.9 3.3 30 33-64 188-217 (235)
49 3bfm_A Biotin protein ligase-l 79.5 2.6 8.8E-05 31.1 4.6 28 32-64 192-219 (235)
50 3rkx_A Biotin-[acetyl-COA-carb 77.4 2.6 8.7E-05 32.8 4.2 32 32-64 277-308 (323)
51 4hcz_A PHD finger protein 1; p 70.7 5.9 0.0002 24.0 3.8 37 33-69 6-45 (58)
52 2e12_A SM-like motif, hypothet 66.4 5.3 0.00018 26.4 3.1 18 34-51 28-45 (101)
53 3fb9_A Uncharacterized protein 52.5 12 0.00041 24.5 3.0 29 26-54 17-49 (90)
54 1ky9_A Protease DO, DEGP, HTRA 51.2 20 0.00068 28.8 4.7 31 35-65 111-141 (448)
55 4a8c_A Periplasmic PH-dependen 51.0 21 0.00072 28.4 4.8 31 35-65 88-118 (436)
56 1x4r_A PARP14 protein; WWE dom 50.9 1 3.5E-05 30.1 -2.4 36 28-67 18-53 (99)
57 2eqj_A Metal-response element- 48.4 25 0.00086 21.7 3.8 25 33-57 16-40 (66)
58 2m0o_A PHD finger protein 1; t 44.9 10 0.00034 24.3 1.6 40 30-69 26-68 (79)
59 3qx1_A FAS-associated factor 1 42.3 14 0.00049 22.7 2.1 23 35-57 8-30 (84)
60 3stj_A Protease DEGQ; serine p 41.2 31 0.0011 26.6 4.3 29 35-63 88-116 (345)
61 3sti_A Protease DEGQ; serine p 38.9 34 0.0012 25.1 4.0 30 35-64 88-117 (245)
62 2xdp_A Lysine-specific demethy 38.5 35 0.0012 23.3 3.7 24 32-55 66-89 (123)
63 3pv2_A DEGQ; trypsin fold, PDZ 38.4 28 0.00095 28.0 3.7 31 35-65 102-132 (451)
64 2qqr_A JMJC domain-containing 37.2 38 0.0013 23.0 3.7 24 33-56 8-31 (118)
65 1sg5_A ORF, hypothetical prote 36.9 17 0.0006 23.2 1.9 55 28-97 19-73 (86)
66 2qqr_A JMJC domain-containing 35.8 42 0.0014 22.8 3.7 24 32-55 65-88 (118)
67 3mkv_A Putative amidohydrolase 33.7 9.9 0.00034 26.8 0.3 23 35-57 399-421 (426)
68 3lgi_A Protease DEGS; stress-s 33.0 58 0.002 23.3 4.4 30 35-64 77-106 (237)
69 1y8t_A Hypothetical protein RV 32.6 53 0.0018 24.6 4.3 30 34-63 63-92 (324)
70 3j21_c 50S ribosomal protein L 32.2 40 0.0014 21.8 3.0 38 24-61 30-67 (87)
71 1te0_A Protease DEGS; two doma 32.1 55 0.0019 24.6 4.3 31 35-65 66-96 (318)
72 1sqr_A 50S ribosomal protein L 32.0 42 0.0014 22.0 3.1 38 24-61 30-67 (95)
73 3tjo_A Serine protease HTRA1; 32.0 61 0.0021 23.2 4.4 32 34-65 86-117 (231)
74 1wj4_A KIAA0794 protein; UBX d 30.7 27 0.00094 23.4 2.1 24 34-57 43-66 (124)
75 1lcy_A HTRA2 serine protease; 30.5 62 0.0021 24.4 4.4 31 35-65 71-101 (325)
76 2dzk_A UBX domain-containing p 29.8 38 0.0013 22.0 2.7 23 34-56 13-35 (109)
77 2cr5_A Reproduction 8; UBX dom 29.7 33 0.0011 22.2 2.3 24 34-57 23-46 (109)
78 2e5p_A Protein PHF1, PHD finge 29.2 77 0.0026 19.6 3.8 38 33-70 12-52 (68)
79 4fln_A Protease DO-like 2, chl 29.1 49 0.0017 27.6 3.8 29 35-63 97-126 (539)
80 3tee_A Flagella basal BODY P-r 27.6 34 0.0012 25.1 2.4 21 32-52 169-189 (219)
81 2wr8_A Putative uncharacterize 25.8 55 0.0019 24.9 3.3 21 44-64 171-191 (259)
82 2e5q_A PHD finger protein 19; 25.3 57 0.0019 19.9 2.6 37 33-69 10-49 (63)
83 1s3s_G P47 protein; AAA ATPase 24.9 27 0.00091 23.4 1.2 23 34-56 52-74 (127)
84 2zbv_A Uncharacterized conserv 24.6 59 0.002 24.7 3.3 20 44-63 167-186 (263)
85 3qo6_A Protease DO-like 1, chl 24.5 83 0.0028 23.9 4.2 30 35-64 77-106 (348)
86 2w5e_A Putative serine proteas 23.9 1.5E+02 0.0051 20.3 5.1 27 35-63 43-69 (163)
87 3num_A Serine protease HTRA1; 23.7 1.2E+02 0.004 22.8 4.8 29 35-63 70-98 (332)
88 3kl9_A PEPA, glutamyl aminopep 21.1 65 0.0022 25.0 3.0 24 31-54 96-119 (355)
No 1
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.90 E-value=8.3e-24 Score=147.28 Aligned_cols=90 Identities=16% Similarity=0.186 Sum_probs=56.7
Q ss_pred cCCCCCCCchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEE
Q 033666 16 AGSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRT 95 (114)
Q Consensus 16 ~~~~~~~~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv 95 (114)
+-+..++.++...|.+|++++|+|+|+|||.|+|+|.|||+||||||+||+|++............|.+|+++|||++|+
T Consensus 15 ~~~~~~kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv 94 (113)
T 4emk_C 15 QPTERPRKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94 (113)
T ss_dssp -----------------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEE
T ss_pred CCccCCccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEE
Confidence 44455668889999999999999999999999999999999999999999998754210011346899999999999999
Q ss_pred EEEEccChhh
Q 033666 96 SCHVDCSIDE 105 (114)
Q Consensus 96 ~I~v~~~~~e 105 (114)
+|......+|
T Consensus 95 ~I~~~d~~ee 104 (113)
T 4emk_C 95 LIAPMDGSEE 104 (113)
T ss_dssp EEEECC----
T ss_pred EEEecCcccc
Confidence 9975544333
No 2
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.8e-23 Score=140.50 Aligned_cols=78 Identities=19% Similarity=0.284 Sum_probs=67.7
Q ss_pred CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEc
Q 033666 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVD 100 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~ 100 (114)
.+|...|.++++++|+|+|+|||.|.|+|.|||+||||+|+||+|++...++.......|.+|+++|||++|++|...
T Consensus 9 ~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~ 86 (96)
T 3bw1_A 9 ETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTP 86 (96)
T ss_dssp CCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECC
T ss_pred hhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEec
Confidence 468899999999999999999999999999999999999999999986543211234678999999999999999643
No 3
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.88 E-value=3.3e-23 Score=138.15 Aligned_cols=80 Identities=30% Similarity=0.482 Sum_probs=66.4
Q ss_pred hHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCC---CCCCceEeeeEEEEcCCCEEEEEEcc
Q 033666 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSCHVDC 101 (114)
Q Consensus 25 ~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~---~~~~~~r~lG~vlIrG~~Iv~I~v~~ 101 (114)
+..+|.+|++++|+|+|+|||.|.|+|.|||+||||+|+||+|++...+++ ......+.+|+++|||++|++|.+..
T Consensus 5 ~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~ 84 (91)
T 1d3b_B 5 KSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEG 84 (91)
T ss_dssp --CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEE
T ss_pred hhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCC
Confidence 456899999999999999999999999999999999999999986432211 12346799999999999999998876
Q ss_pred Chh
Q 033666 102 SID 104 (114)
Q Consensus 102 ~~~ 104 (114)
++.
T Consensus 85 ~~~ 87 (91)
T 1d3b_B 85 PPP 87 (91)
T ss_dssp CCC
T ss_pred CCC
Confidence 554
No 4
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.87 E-value=4.9e-22 Score=152.77 Aligned_cols=82 Identities=29% Similarity=0.477 Sum_probs=70.3
Q ss_pred chHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCC---CCCCceEeeeEEEEcCCCEEEEEEc
Q 033666 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTS---PSPMEQRCLGIILIPSSCRTSCHVD 100 (114)
Q Consensus 24 ~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~---~~~~~~r~lG~vlIrG~~Iv~I~v~ 100 (114)
.+..+|.+|+|++|+|+|+|||+|+|+|+|||+||||||+||+|++..+.++ .....+|++|+++|||+||++|+++
T Consensus 4 ~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve 83 (231)
T 3pgw_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (231)
T ss_pred CchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEec
Confidence 3567999999999999999999999999999999999999999997543221 2345789999999999999999999
Q ss_pred cChhh
Q 033666 101 CSIDE 105 (114)
Q Consensus 101 ~~~~e 105 (114)
...-+
T Consensus 84 ~pPp~ 88 (231)
T 3pgw_B 84 GPPPK 88 (231)
T ss_pred CCCCC
Confidence 66443
No 5
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.87 E-value=1e-21 Score=126.76 Aligned_cols=70 Identities=21% Similarity=0.220 Sum_probs=64.5
Q ss_pred CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEE
Q 033666 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHV 99 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v 99 (114)
..|...|.++++++|+|.|+|||.|.|+|.|||+||||+|+||.|+... ...+.+|.++|||++|++|..
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-------~~~~~lg~v~iRG~~I~~i~~ 72 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG-------EVVKRYGKIVIRGDNVLAISP 72 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT-------EEEEEEEEEEECGGGEEEEEE
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC-------CceeECCEEEECCCEEEEEEe
Confidence 4688999999999999999999999999999999999999999998742 468899999999999999964
No 6
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.86 E-value=2e-21 Score=131.48 Aligned_cols=81 Identities=19% Similarity=0.171 Sum_probs=65.6
Q ss_pred CCCCCC--CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCE
Q 033666 17 GSDTKG--SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCR 94 (114)
Q Consensus 17 ~~~~~~--~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~I 94 (114)
+|||.+ ..|...|.++++++|+|.|+|||.|.|+|.|||+||||+|+||+|+... ....+.+|.++|||++|
T Consensus 11 ~~~~~~~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~------~~~~~~lg~v~IRG~nI 84 (94)
T 4emk_A 11 SQDPMSMTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTV------TGVTEKHSEMLLNGNGM 84 (94)
T ss_dssp ---------CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETT------TCCEEEEEEEEECSTTE
T ss_pred ccCCccccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecC------CCcEeEcCEEEEcCCEE
Confidence 566643 4578899999999999999999999999999999999999999998732 23588999999999999
Q ss_pred EEEEEccCh
Q 033666 95 TSCHVDCSI 103 (114)
Q Consensus 95 v~I~v~~~~ 103 (114)
++|....++
T Consensus 85 ~~i~p~~~p 93 (94)
T 4emk_A 85 CMLIPGGKP 93 (94)
T ss_dssp EEEEECC--
T ss_pred EEEEeCCCC
Confidence 999876655
No 7
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.86 E-value=1.3e-21 Score=128.93 Aligned_cols=75 Identities=21% Similarity=0.284 Sum_probs=66.6
Q ss_pred CCCCCCCchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEE
Q 033666 17 GSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTS 96 (114)
Q Consensus 17 ~~~~~~~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~ 96 (114)
++.+....|...|.++++++|+|.|+|||.|.|+|.|||+||||+|+||.|+... ...+.+|.++|||++|+.
T Consensus 8 ~~~~~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-------~~~~~lg~v~IRG~~I~~ 80 (83)
T 1mgq_A 8 SQRVNVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDG-------EVTRRLGTVLIRGDNIVY 80 (83)
T ss_dssp --CCCTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETT-------EEEEEEEEEEECGGGEEE
T ss_pred cccccCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecC-------CcccCCCEEEECCCEEEE
Confidence 3555557889999999999999999999999999999999999999999998742 468899999999999998
Q ss_pred EE
Q 033666 97 CH 98 (114)
Q Consensus 97 I~ 98 (114)
|.
T Consensus 81 i~ 82 (83)
T 1mgq_A 81 IS 82 (83)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 8
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.86 E-value=3.1e-22 Score=140.40 Aligned_cols=85 Identities=19% Similarity=0.190 Sum_probs=67.3
Q ss_pred CCCchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCC-CC--CCCCc-----eEeeeEEEEcCC
Q 033666 21 KGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRR-TS--PSPME-----QRCLGIILIPSS 92 (114)
Q Consensus 21 ~~~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~-~~--~~~~~-----~r~lG~vlIrG~ 92 (114)
+...|...|.++++++|+|.|+|||.|.|+|.|||+||||+|+||+|++.... .+ +.+.. .+.+|+++|||+
T Consensus 25 ~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~ 104 (121)
T 2fwk_A 25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104 (121)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred cccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCC
Confidence 34578999999999999999999999999999999999999999999885411 00 01122 789999999999
Q ss_pred CEEEEEEccChhh
Q 033666 93 CRTSCHVDCSIDE 105 (114)
Q Consensus 93 ~Iv~I~v~~~~~e 105 (114)
+|++|....++.+
T Consensus 105 nVv~I~~~~~~~~ 117 (121)
T 2fwk_A 105 NVAMLVPGGDPDS 117 (121)
T ss_dssp GEEEEESSSCC--
T ss_pred EEEEEEecCCCCC
Confidence 9999987665543
No 9
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.86 E-value=1.6e-21 Score=126.27 Aligned_cols=72 Identities=22% Similarity=0.278 Sum_probs=65.4
Q ss_pred CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEcc
Q 033666 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDC 101 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~~ 101 (114)
..|...|+++++++|+|.|+|||.|.|+|.|||+||||+|+||.|++.. ...+.+|.++|||++|++|....
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-------~~~~~lg~v~iRG~~I~~i~~~d 74 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNG-------EVVRKVGSVVIRGDTVVFVSPAP 74 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETT-------EEEEEEEEEEECGGGEEEEEECC
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecC-------CcEeECCEEEECCCEEEEEEeCC
Confidence 3688999999999999999999999999999999999999999998742 36789999999999999997543
No 10
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.86 E-value=6.5e-22 Score=128.44 Aligned_cols=68 Identities=18% Similarity=0.389 Sum_probs=51.9
Q ss_pred hHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEE
Q 033666 25 HISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHV 99 (114)
Q Consensus 25 ~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v 99 (114)
+.++|.+++|++|+|+|+|||.|.|+|.|||+||||+|+||.|+... ...+.+|.++|||++|++|+.
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~-------~~~~~lg~v~iRG~~I~~i~~ 72 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATS-------GQQNNIGMVVIRGNSIIMLEA 72 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC-----------CBSSEEECSSSEEEEEC
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccC-------CcEeEcCEEEECCCeEEEEEe
Confidence 56899999999999999999999999999999999999999998642 257899999999999999964
No 11
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.86 E-value=1.8e-21 Score=131.09 Aligned_cols=77 Identities=17% Similarity=0.196 Sum_probs=63.9
Q ss_pred CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCC------CCCceEeeeEEEEcCCCEEE
Q 033666 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP------SPMEQRCLGIILIPSSCRTS 96 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~------~~~~~r~lG~vlIrG~~Iv~ 96 (114)
..|...|+.+++++|+|.|+|||.|.|+|.|||+||||+|+||+|++...+++. .....|.+|+++|||++|++
T Consensus 8 ~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~ 87 (93)
T 4emg_A 8 AEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVIL 87 (93)
T ss_dssp -CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEE
T ss_pred CCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEE
Confidence 567899999999999999999999999999999999999999999986533211 12467999999999999999
Q ss_pred EEE
Q 033666 97 CHV 99 (114)
Q Consensus 97 I~v 99 (114)
|+.
T Consensus 88 I~p 90 (93)
T 4emg_A 88 IAP 90 (93)
T ss_dssp EEC
T ss_pred EEe
Confidence 964
No 12
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.86 E-value=3.4e-21 Score=126.18 Aligned_cols=71 Identities=21% Similarity=0.212 Sum_probs=65.3
Q ss_pred CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEc
Q 033666 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVD 100 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~ 100 (114)
..|...|.++++++|+|.|+|||.|.|+|.|||+||||+|+||.|++.. ...+.+|.++|||++|+.|...
T Consensus 8 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~-------~~~~~lg~v~iRG~~I~~i~~~ 78 (81)
T 1th7_A 8 ETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSD-------GSGKKLGTIVIRGDNVILISPL 78 (81)
T ss_dssp HHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSS-------SCEEEEEEEEECGGGEEEEEEC
T ss_pred cchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecC-------CceeECCEEEECCCEEEEEEec
Confidence 5789999999999999999999999999999999999999999998642 3679999999999999999653
No 13
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.85 E-value=3.9e-21 Score=126.01 Aligned_cols=70 Identities=16% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEE
Q 033666 22 GSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHV 99 (114)
Q Consensus 22 ~~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v 99 (114)
...|...|.++++++|+|.|+|||.|.|+|.|||+||||+|+||.|+ . ....+.+|.++|||++|++|..
T Consensus 9 ~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~-------~~~~~~lg~v~iRG~~I~~i~~ 78 (81)
T 1i8f_A 9 FATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I-------DGNVYKRGTMVVRGENVLFISP 78 (81)
T ss_dssp -CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E-------TTEEEEEEEEEECGGGEEEEEE
T ss_pred ccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c-------CCcccCCCEEEECCCEEEEEEe
Confidence 47899999999999999999999999999999999999999999998 2 1368999999999999999964
No 14
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.85 E-value=3.4e-21 Score=124.67 Aligned_cols=70 Identities=19% Similarity=0.301 Sum_probs=63.9
Q ss_pred CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEE
Q 033666 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHV 99 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v 99 (114)
..|.+.|++++|++|+|.|+|||.|.|+|.|||+||||+|+||.|+.. ....+.+|.++|||++|++|..
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-------~~~~~~lg~v~iRG~~I~~i~~ 72 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVN-------GKKTNVYGDAFIRGNNVLYVSA 72 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEET-------TEEEEEEEEEEEEGGGSSEEEE
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEec-------CCcccEecEEEEcCCeEEEEEe
Confidence 468899999999999999999999999999999999999999999863 2357899999999999999963
No 15
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.85 E-value=8.4e-21 Score=123.13 Aligned_cols=69 Identities=19% Similarity=0.262 Sum_probs=63.7
Q ss_pred chHHHHHHhcCCeEEEEEcCC-eEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEE
Q 033666 24 NHISRVRKLLCRRMLVGIKDG-RFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHV 99 (114)
Q Consensus 24 ~~~~~L~~~l~k~V~V~L~dG-R~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v 99 (114)
.|...|.++++++|+|.|+|| |.|.|+|.|||+||||+|+||.|+.. ....+.+|.++|||++|++|..
T Consensus 5 ~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~-------~~~~~~lg~v~iRG~nI~~i~~ 74 (77)
T 1ljo_A 5 LPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKG-------EEKVRSLGEIVLRGNNVVLIQP 74 (77)
T ss_dssp CHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEET-------TEEEEEEEEEEECGGGEEEEEE
T ss_pred chHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEec-------CCcEeECCeEEEeCCeEEEEEe
Confidence 578999999999999999999 99999999999999999999999873 2368899999999999999964
No 16
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.84 E-value=6.2e-21 Score=126.74 Aligned_cols=76 Identities=21% Similarity=0.154 Sum_probs=65.3
Q ss_pred CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEccC
Q 033666 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCS 102 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~~~ 102 (114)
..|...|++++|++|+|.|+|||.|.|+|.|||+||||+|+||.|+.. ....+.+|.++|||++|++|..-..
T Consensus 5 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~-------g~~~~~lg~v~IRG~nI~~i~~~d~ 77 (86)
T 3s6n_F 5 LNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYID-------GALSGHLGEVLIRCNNVLYIRGVEE 77 (86)
T ss_dssp CCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEET-------TEEEEEESSEEECGGGEEEEEECC-
T ss_pred cCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcC-------CceeeEccEEEEeCCeEEEEEeCCc
Confidence 468899999999999999999999999999999999999999999753 1357899999999999999976555
Q ss_pred hhh
Q 033666 103 IDE 105 (114)
Q Consensus 103 ~~e 105 (114)
.++
T Consensus 78 ~~~ 80 (86)
T 3s6n_F 78 EEE 80 (86)
T ss_dssp ---
T ss_pred ccc
Confidence 444
No 17
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.84 E-value=3.8e-21 Score=129.63 Aligned_cols=80 Identities=24% Similarity=0.207 Sum_probs=59.2
Q ss_pred ecccCCCCCCCchHHHHHHhcCCeEEEEEcCC-eEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcC
Q 033666 13 ESSAGSDTKGSNHISRVRKLLCRRMLVGIKDG-RFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPS 91 (114)
Q Consensus 13 ~~~~~~~~~~~~~~~~L~~~l~k~V~V~L~dG-R~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG 91 (114)
|+++.+.+....|...|.+++|++|.|.|+|| |.|.|+|.|||++|||+|+||+|+.. +...+.+|.++|||
T Consensus 10 ~~~~~~~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~-------~~~~~~lg~v~IRG 82 (93)
T 1n9r_A 10 ESSDISAMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVA-------GVSHGTLGEIFIRC 82 (93)
T ss_dssp ----------------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEET-------TEEEEECCSEEECG
T ss_pred cCccccccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcC-------CCeEeEcCEEEEcC
Confidence 45556677778889999999999999999999 99999999999999999999999862 23678999999999
Q ss_pred CCEEEEEE
Q 033666 92 SCRTSCHV 99 (114)
Q Consensus 92 ~~Iv~I~v 99 (114)
++|+.|..
T Consensus 83 ~nI~~I~~ 90 (93)
T 1n9r_A 83 NNVLYIRE 90 (93)
T ss_dssp GGEEEEEE
T ss_pred CeEEEEEe
Confidence 99999964
No 18
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.82 E-value=2.3e-20 Score=125.75 Aligned_cols=71 Identities=21% Similarity=0.230 Sum_probs=64.9
Q ss_pred CchHHHHHHhcCCeEEEEE----cCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEE
Q 033666 23 SNHISRVRKLLCRRMLVGI----KDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCH 98 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L----~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~ 98 (114)
..|...|.++++++++|++ +|||.|.|+|.|||+||||+|+||+|+.... ...+.+|.++|||++|++|.
T Consensus 15 ~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~------~~~~~lg~v~iRG~nV~~i~ 88 (92)
T 3s6n_E 15 VQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKT------KSRKQLGRIMLKGDNITLLQ 88 (92)
T ss_dssp CCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSS------CCEEEEEEEEECGGGEEEEE
T ss_pred cCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCC------CceeEcCeEEEeCCEEEEEE
Confidence 6789999999999999999 9999999999999999999999999986432 36789999999999999996
Q ss_pred E
Q 033666 99 V 99 (114)
Q Consensus 99 v 99 (114)
.
T Consensus 89 ~ 89 (92)
T 3s6n_E 89 S 89 (92)
T ss_dssp E
T ss_pred e
Confidence 4
No 19
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.81 E-value=6.8e-20 Score=127.89 Aligned_cols=82 Identities=12% Similarity=0.255 Sum_probs=62.3
Q ss_pred CCCCCchHHHHHHhc--CCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCC-------CCCceEeeeEEEE
Q 033666 19 DTKGSNHISRVRKLL--CRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSP-------SPMEQRCLGIILI 89 (114)
Q Consensus 19 ~~~~~~~~~~L~~~l--~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~-------~~~~~r~lG~vlI 89 (114)
+.....|...|..++ +++|+|.|+|||.|.|+|.|||+||||+|+||+|++...++.. .....|.+|+++|
T Consensus 22 ~~~~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~I 101 (118)
T 1b34_B 22 EEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFL 101 (118)
T ss_dssp ----CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEE
T ss_pred hhcccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEE
Confidence 334468899999999 5999999999999999999999999999999999875432110 1123678999999
Q ss_pred cCCCEEEEEEc
Q 033666 90 PSSCRTSCHVD 100 (114)
Q Consensus 90 rG~~Iv~I~v~ 100 (114)
||++|++|...
T Consensus 102 RG~nVv~I~~~ 112 (118)
T 1b34_B 102 RGDSVIVVLRN 112 (118)
T ss_dssp CGGGEEEEEEC
T ss_pred cCCEEEEEEeC
Confidence 99999999754
No 20
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.81 E-value=2.4e-19 Score=116.21 Aligned_cols=70 Identities=9% Similarity=-0.009 Sum_probs=63.8
Q ss_pred CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEE
Q 033666 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHV 99 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v 99 (114)
..|...|++++|++|.|.|++|++|.|+|.|||.|||++|+||+|+... ...+.+|.++|||++|..|.+
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~-------~~~~~lg~v~IRG~nI~~i~l 73 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD-------GRVAQLEQVYIRGCKIRFLIL 73 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT-------SCEEEEEEEEECGGGEEEEEE
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCC-------CcEEEcCeEEEeCCEEEEEEc
Confidence 4688999999999999999999999999999999999999999997522 248899999999999999975
No 21
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.81 E-value=9.7e-20 Score=125.34 Aligned_cols=76 Identities=17% Similarity=0.169 Sum_probs=54.4
Q ss_pred CCCCCCCchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEE
Q 033666 17 GSDTKGSNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTS 96 (114)
Q Consensus 17 ~~~~~~~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~ 96 (114)
++||- .|...|++++|++|.|.|+|||.|.|+|.|||.+|||+|+||+|+... ....+.+|.++|||++|.+
T Consensus 11 ~~~~~--~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~d------g~~~~~lg~v~IRG~nI~~ 82 (105)
T 4emh_A 11 SQDPM--LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPD------GDKFFRLPECYIRGNNIKY 82 (105)
T ss_dssp -----------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTT------SCEEEEEEEEEECGGGEEE
T ss_pred cCCCC--cHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccC------CceeeEcCeEEEeCCeEEE
Confidence 56664 678899999999999999999999999999999999999999997532 2357899999999999999
Q ss_pred EEEc
Q 033666 97 CHVD 100 (114)
Q Consensus 97 I~v~ 100 (114)
|.+.
T Consensus 83 I~~p 86 (105)
T 4emh_A 83 LRIQ 86 (105)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9654
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.78 E-value=8.7e-19 Score=122.59 Aligned_cols=72 Identities=17% Similarity=0.095 Sum_probs=64.2
Q ss_pred chHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEccC
Q 033666 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCS 102 (114)
Q Consensus 24 ~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~~~ 102 (114)
.|..+|+++++++|.|.|+||++|.|+|.+||+||||+|+||+|+... ...+.+|.++|||++|++|.+...
T Consensus 2 ~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~-------~~~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 2 KLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKN-------REPVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTT-------SCCEEEEEEEECGGGEEEEECCTT
T ss_pred ChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCC-------CceeEcceEEEcCCeEEEEEeccc
Confidence 367899999999999999999999999999999999999999997522 246899999999999999976544
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.73 E-value=1.5e-17 Score=117.63 Aligned_cols=72 Identities=10% Similarity=-0.017 Sum_probs=64.5
Q ss_pred CchHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEcc
Q 033666 23 SNHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDC 101 (114)
Q Consensus 23 ~~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~~ 101 (114)
..|..+|+++++++|.|.|++|++|.|+|.+||.||||+|+||+|+... .....+|.++|||++|.+|.+..
T Consensus 4 ~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~-------g~~~~l~~v~IRGnnI~~I~lpd 75 (126)
T 2y9a_D 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRD-------GRVAQLEQVYIRGSKIRFLILPD 75 (126)
T ss_dssp CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTT-------SCCEEEEEEEECGGGEEEEECCS
T ss_pred ccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCC-------CcEeecccEEEeCCEEEEEEccc
Confidence 3578999999999999999999999999999999999999999997522 24789999999999999998654
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.72 E-value=9.6e-18 Score=119.21 Aligned_cols=66 Identities=21% Similarity=0.328 Sum_probs=59.5
Q ss_pred HHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEccC
Q 033666 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCS 102 (114)
Q Consensus 26 ~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~~~ 102 (114)
.+.|.+++|++|.|.|+|||.|.|+|.|||+||||+|+||.|+. .+.+|.++|||++|+.|.....
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~-----------~~~lg~v~IRG~nI~~I~~~d~ 67 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA-----------GEKFNRVFIMYRYIVHIDSTER 67 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT-----------CCEEEEEEECGGGEEEEEECCC
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc-----------CCEeceEEEeCCeEEEEEcCCc
Confidence 36799999999999999999999999999999999999999951 3679999999999999976543
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.05 E-value=6.4e-10 Score=73.97 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=58.5
Q ss_pred HHHHHhcCCeEEEEEcCCeEEEEEEEEec-CccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEccChhh
Q 033666 27 SRVRKLLCRRMLVGIKDGRFFLGSFHCID-KQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDE 105 (114)
Q Consensus 27 ~~L~~~l~k~V~V~L~dGR~i~G~L~~~D-~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~~~~~e 105 (114)
..|..|+||+|+|++.||++|.|.|.+|| ...|++|.|+.| ......++|.|..|..|++....++
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~~-------------~~~~~~~iI~G~aI~eI~v~~~~~~ 76 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFLE-------------DGSMSVTGIMGHAVQTVETMNEGDH 76 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEECT-------------TSCEEEEEECGGGEEEEEEEECCCH
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeeccc-------------CCeEEEEEEecceEEEEEEecchhH
Confidence 38999999999999999999999999999 999999999811 2224789999999999988877776
Q ss_pred h
Q 033666 106 Q 106 (114)
Q Consensus 106 ~ 106 (114)
+
T Consensus 77 ~ 77 (86)
T 1y96_A 77 R 77 (86)
T ss_dssp H
T ss_pred H
Confidence 6
No 26
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.62 E-value=0.006 Score=40.89 Aligned_cols=78 Identities=14% Similarity=0.120 Sum_probs=57.1
Q ss_pred HHHHHHhcCCeEEEEEcCCeEEEEEEEEec-CccceEecccEEEeecCCCC--CCCCceEeeeEEEEcCCCEEEEEEccC
Q 033666 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCID-KQGNIILQDAVEYRSTRRTS--PSPMEQRCLGIILIPSSCRTSCHVDCS 102 (114)
Q Consensus 26 ~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D-~~~NLvLsda~E~~~~~~~~--~~~~~~r~lG~vlIrG~~Iv~I~v~~~ 102 (114)
...-..|||+++.++.+.+-.|+|+|...| +..-|-|.++.-+-+..... +.......+.-++.||+.|..+.+...
T Consensus 11 ~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e~ 90 (95)
T 2fb7_A 11 PSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEP 90 (95)
T ss_dssp -----CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESCC
T ss_pred CCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEecC
Confidence 344568999999999999999999999999 66778899887654332211 223344567899999999999988655
Q ss_pred h
Q 033666 103 I 103 (114)
Q Consensus 103 ~ 103 (114)
+
T Consensus 91 p 91 (95)
T 2fb7_A 91 P 91 (95)
T ss_dssp S
T ss_pred C
Confidence 4
No 27
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=96.58 E-value=0.031 Score=36.95 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=55.9
Q ss_pred HhcCCeEEEEEcCCeEEEEEEEEec-CccceEecccEEEeecCCCC--CCCCceEeeeEEEEcCCCEEEEEEcc
Q 033666 31 KLLCRRMLVGIKDGRFFLGSFHCID-KQGNIILQDAVEYRSTRRTS--PSPMEQRCLGIILIPSSCRTSCHVDC 101 (114)
Q Consensus 31 ~~l~k~V~V~L~dGR~i~G~L~~~D-~~~NLvLsda~E~~~~~~~~--~~~~~~r~lG~vlIrG~~Iv~I~v~~ 101 (114)
.|+|+++.++.+.+-.|+|+|...| +..-|-|.++.-+-+...+. ........+.-++.||+.|..+.+..
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~ 83 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVN 83 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEec
Confidence 4899999999999999999999999 66788899988765443211 12234456789999999999988754
No 28
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=95.97 E-value=0.011 Score=41.40 Aligned_cols=36 Identities=22% Similarity=0.182 Sum_probs=32.7
Q ss_pred HHHhcCCeEEEEEcCCeEEEEEEEEecCccceEe--ccc
Q 033666 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIIL--QDA 65 (114)
Q Consensus 29 L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvL--sda 65 (114)
+.+|+|+.|.|.|+||..+.|++..+|.. +|+| +++
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a 44 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFDSS-NSILQLRLA 44 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEETT-TTEEEEEET
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeecCC-eeEEecccc
Confidence 57899999999999999999999999965 7888 877
No 29
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=95.54 E-value=0.051 Score=35.64 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=48.4
Q ss_pred HHHHHHhcCCeEEEEEcCCeEEEEEEEEec-CccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEc
Q 033666 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCID-KQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVD 100 (114)
Q Consensus 26 ~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D-~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~ 100 (114)
...|..+.|++|.+.+.++-.+.|.|.|+| ...|+..++ -+ ++ --.+...++|+..|+++..+
T Consensus 21 Lr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~-L~---TP--------iGv~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 21 LRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQ-LQ---TP--------IGVQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEE-EC---CT--------TCCEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhh-cC---CC--------cccchhhhhhcCCEEEEEec
Confidence 345677889999999999999999999999 555666442 21 11 22367899999999999865
No 30
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=94.79 E-value=0.073 Score=34.35 Aligned_cols=41 Identities=10% Similarity=0.035 Sum_probs=32.9
Q ss_pred CchHHHHHHhc--CCeEEEEEcCCeEEEEEEEEecCccceEec
Q 033666 23 SNHISRVRKLL--CRRMLVGIKDGRFFLGSFHCIDKQGNIILQ 63 (114)
Q Consensus 23 ~~~~~~L~~~l--~k~V~V~L~dGR~i~G~L~~~D~~~NLvLs 63 (114)
.-.-.+|+.+- +..|.|-|.+|-.+.|.+.+||+|+=|+-.
T Consensus 10 nlQd~fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~ 52 (78)
T 3ahu_A 10 NIQDQFLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLES 52 (78)
T ss_dssp CHHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEES
T ss_pred ChHHHHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEE
Confidence 34445666666 788999999999999999999999766643
No 31
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=93.97 E-value=0.14 Score=32.31 Aligned_cols=42 Identities=17% Similarity=0.283 Sum_probs=35.3
Q ss_pred CCCCCchHHHHHHhcC--CeEEEEEcCCeEEEEEEEEecCccceE
Q 033666 19 DTKGSNHISRVRKLLC--RRMLVGIKDGRFFLGSFHCIDKQGNII 61 (114)
Q Consensus 19 ~~~~~~~~~~L~~~l~--k~V~V~L~dGR~i~G~L~~~D~~~NLv 61 (114)
|++ .+....|+.|+. ..|.|.|.+|-.++|.+.-+|.++=.+
T Consensus 5 dt~-lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L 48 (70)
T 3hfo_A 5 DSG-LPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGL 48 (70)
T ss_dssp CCS-CHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cCC-CCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEE
Confidence 566 788999999985 568888999999999999999985444
No 32
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=93.79 E-value=0.12 Score=33.83 Aligned_cols=64 Identities=11% Similarity=0.064 Sum_probs=50.0
Q ss_pred HHhcCCeEEEEEcCCe-EEEEEEEEecCc-cceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEccCh
Q 033666 30 RKLLCRRMLVGIKDGR-FFLGSFHCIDKQ-GNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSI 103 (114)
Q Consensus 30 ~~~l~k~V~V~L~dGR-~i~G~L~~~D~~-~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~~~~ 103 (114)
.+|||+.|.+...|+- +|.|.+..+|.. .||.|.++. +.. -+...--|.+++.-|..+.+...+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f--~NG--------~~~~s~eVtls~~DI~~L~ii~~~ 70 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF--HNG--------VKCLVPEVTFRAGDITELKILEIP 70 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE--ETT--------EECSSSEEEEEGGGCSEEEEEECC
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh--hCC--------CCCCCcEEEEEecChhheEEEecC
Confidence 4799999999999999 999999999955 589999994 321 122234488999999888776443
No 33
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=93.75 E-value=0.26 Score=31.53 Aligned_cols=40 Identities=13% Similarity=0.002 Sum_probs=32.7
Q ss_pred HHHHHHhc--CCeEEEEEcCCeEEEEEEEEecCccceEeccc
Q 033666 26 ISRVRKLL--CRRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65 (114)
Q Consensus 26 ~~~L~~~l--~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda 65 (114)
-.+|+.+. ...|.|.|.+|-.+.|.+.+||+|+=++-.+.
T Consensus 9 d~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~g 50 (77)
T 1kq1_A 9 DKALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQG 50 (77)
T ss_dssp HHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEETT
T ss_pred HHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEECC
Confidence 45677777 78899999999999999999999976664443
No 34
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=93.61 E-value=0.14 Score=32.52 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=31.7
Q ss_pred chHHHHHHhc--CCeEEEEEcCCeEEEEEEEEecCccceE
Q 033666 24 NHISRVRKLL--CRRMLVGIKDGRFFLGSFHCIDKQGNII 61 (114)
Q Consensus 24 ~~~~~L~~~l--~k~V~V~L~dGR~i~G~L~~~D~~~NLv 61 (114)
-.-.+|+.+. ...|.|.|.+|-.+.|.+.+||+|+=++
T Consensus 9 lQd~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL 48 (74)
T 2ylb_A 9 LQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILL 48 (74)
T ss_dssp CHHHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 3455777777 7889999999999999999999996544
No 35
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=93.40 E-value=0.13 Score=32.63 Aligned_cols=44 Identities=18% Similarity=0.188 Sum_probs=34.0
Q ss_pred CCCCCCCchHHHHHHhcCC--eEEEEEcCCeEEEEEEEEecCccceE
Q 033666 17 GSDTKGSNHISRVRKLLCR--RMLVGIKDGRFFLGSFHCIDKQGNII 61 (114)
Q Consensus 17 ~~~~~~~~~~~~L~~~l~k--~V~V~L~dGR~i~G~L~~~D~~~NLv 61 (114)
.=|++ .+....|+.|+.. .|.|+|.+|-.++|++.-+|.++=.+
T Consensus 5 ~fdt~-lPsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L 50 (72)
T 3hfn_A 5 EFDTS-LPSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCI 50 (72)
T ss_dssp ----C-HHHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred ccCCC-CCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEE
Confidence 34666 8889999999975 57788899999999999999985333
No 36
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=93.01 E-value=0.25 Score=35.41 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=39.9
Q ss_pred eeeeeeecccCCCCCCCchHHHHHHhcCCeEEEEE----cCCeEEEEEEEEecCccceEe
Q 033666 7 TTETLVESSAGSDTKGSNHISRVRKLLCRRMLVGI----KDGRFFLGSFHCIDKQGNIIL 62 (114)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~L~~~l~k~V~V~L----~dGR~i~G~L~~~D~~~NLvL 62 (114)
..+.+-=+|.+-+-+ .........|+|+.|+|++ .+++.|.|+|.++|.. .+.|
T Consensus 78 ~~Y~LEVSSPGldRp-L~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 78 EQYFLEITSPGLERP-LKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp SCEEEEEECCSSSSC-CSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred CCeEEEEeCCCCCCC-CCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 344555566666655 4556677899999999999 4558999999999976 4544
No 37
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=92.94 E-value=0.33 Score=30.70 Aligned_cols=35 Identities=3% Similarity=0.087 Sum_probs=28.9
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCccceEecccEE
Q 033666 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67 (114)
Q Consensus 33 l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E 67 (114)
-+..|.|-|.+|-.+.|.+.|||+|+=|+-++...
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~~g~q 58 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVKVGDRN 58 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEEETTEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEEeCCce
Confidence 46789999999999999999999998766554433
No 38
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=92.71 E-value=0.15 Score=32.95 Aligned_cols=38 Identities=11% Similarity=0.082 Sum_probs=30.2
Q ss_pred chHHHHHHhcCCe--EEEEEcCCeEEEEEEEEecCccceE
Q 033666 24 NHISRVRKLLCRR--MLVGIKDGRFFLGSFHCIDKQGNII 61 (114)
Q Consensus 24 ~~~~~L~~~l~k~--V~V~L~dGR~i~G~L~~~D~~~NLv 61 (114)
-.-.+|+.+...+ |.|.|.+|-.+.|.+.+||+|+=++
T Consensus 8 lQd~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 8 LQDPFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp THHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred hHHHHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 3345666666555 8899999999999999999997554
No 39
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=92.60 E-value=0.23 Score=31.07 Aligned_cols=43 Identities=19% Similarity=0.334 Sum_probs=34.4
Q ss_pred HHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEe
Q 033666 26 ISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYR 69 (114)
Q Consensus 26 ~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~ 69 (114)
-..|..|-|+||-|.+.+...|+|.|.-||.. -|+|.|+..+.
T Consensus 8 dktL~~WKg~rvAv~vg~ehSFtGiledFDeE-viLL~dV~D~~ 50 (71)
T 1ycy_A 8 EKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEE-VILLKDVVDVI 50 (71)
T ss_dssp HHHHHHHTTSEEEEEEC----CEEEEEEECSS-EEEEEEEEETT
T ss_pred HHHHHHhCCcEEEEEecCcceeeeehhhcCcc-eeehhhHHHHh
Confidence 35689999999999999999999999999988 67888998864
No 40
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=91.97 E-value=0.19 Score=38.38 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=31.3
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEecCccceEecccEE
Q 033666 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67 (114)
Q Consensus 32 ~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E 67 (114)
++|++|+|...+|..+.|++.|+|..+.|+|....+
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~~g 257 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVGGR 257 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEETTE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEECCC
Confidence 468999999888999999999999999999975433
No 41
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=91.43 E-value=0.3 Score=31.73 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=29.8
Q ss_pred HHHHHHhc--CCeEEEEEcCCeEEEEEEEEecCccceEe
Q 033666 26 ISRVRKLL--CRRMLVGIKDGRFFLGSFHCIDKQGNIIL 62 (114)
Q Consensus 26 ~~~L~~~l--~k~V~V~L~dGR~i~G~L~~~D~~~NLvL 62 (114)
-.+|+.+- +..|.|.|.+|-.+.|.+.+||+|+=|+-
T Consensus 9 d~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 9 DPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 34555555 67889999999999999999999976554
No 42
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=91.29 E-value=0.33 Score=32.87 Aligned_cols=39 Identities=10% Similarity=0.053 Sum_probs=31.3
Q ss_pred chHHHHHHhcCC--eEEEEEcCCeEEEEEEEEecCccceEe
Q 033666 24 NHISRVRKLLCR--RMLVGIKDGRFFLGSFHCIDKQGNIIL 62 (114)
Q Consensus 24 ~~~~~L~~~l~k--~V~V~L~dGR~i~G~L~~~D~~~NLvL 62 (114)
-.-.+|+.+..+ .|.|.|.+|-.+.|.+.+||+|+=++-
T Consensus 9 lQd~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~ 49 (104)
T 2y90_A 9 LQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLK 49 (104)
T ss_dssp CHHHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cHHHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEE
Confidence 344567777666 788899999999999999999976554
No 43
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=84.94 E-value=1.6 Score=33.74 Aligned_cols=33 Identities=27% Similarity=0.423 Sum_probs=28.2
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEecCccceEeccc
Q 033666 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65 (114)
Q Consensus 32 ~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda 65 (114)
++|++|+|... +..+.|++.|+|..+.|++...
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~ 303 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQD 303 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEET
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEEC
Confidence 47999999865 5589999999999999999743
No 44
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=84.35 E-value=1.3 Score=32.89 Aligned_cols=32 Identities=13% Similarity=0.261 Sum_probs=28.9
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEecCccceEecc
Q 033666 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQD 64 (114)
Q Consensus 32 ~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsd 64 (114)
++|++|+|...++..+.|++.|+|..+.|+ ..
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 489999999988877999999999999999 64
No 45
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=83.24 E-value=4 Score=27.29 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=49.5
Q ss_pred HHhcCCeEEEEEcCCe-EEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEEEEccCh
Q 033666 30 RKLLCRRMLVGIKDGR-FFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSI 103 (114)
Q Consensus 30 ~~~l~k~V~V~L~dGR-~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I~v~~~~ 103 (114)
.+|+|+-|.|...|-- +|+|.+..+|+. +|.|.++...-. .-+.....|.++...|..+.+-...
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~~-~ItL~kaFrNGi--------plk~~~~EVtLsa~DI~~L~IIe~~ 73 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISAE-EITIVRAFRNGV--------PLRKQNAEVVLKCTDIRSIDLIEPA 73 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEETT-EEEEEEEEETTE--------ECSCSSSCEEEETTTEEEEEEEECC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEcccc-eeEEhhhhhcCc--------CcCCCCceEEEEecchhheeeeccc
Confidence 4899999999999987 999999999964 599988876311 1234456678888888888765443
No 46
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=82.95 E-value=0.72 Score=34.26 Aligned_cols=32 Identities=9% Similarity=0.169 Sum_probs=27.2
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEecCccceEeccc
Q 033666 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65 (114)
Q Consensus 32 ~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda 65 (114)
++|++|++...++ +.|++.|+|..+.|++...
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 217 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILTE 217 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEEC
Confidence 4799999976655 9999999999999999743
No 47
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=80.32 E-value=4.6 Score=25.30 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=31.1
Q ss_pred HHHhcCCeEEEEEcCCeEEEEEEEEecCccceEe-cccEEEee
Q 033666 29 VRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIIL-QDAVEYRS 70 (114)
Q Consensus 29 L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvL-sda~E~~~ 70 (114)
..=.++..|.++.+||+.|.|+++...+..=||. .|-.|++.
T Consensus 14 ~~~~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv 56 (69)
T 2xk0_A 14 VTYALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWC 56 (69)
T ss_dssp CCCCTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEE
T ss_pred cccccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceee
Confidence 3445799999999999999999977765555543 55555554
No 48
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=80.31 E-value=1.4 Score=32.89 Aligned_cols=30 Identities=27% Similarity=0.267 Sum_probs=24.1
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCccceEecc
Q 033666 33 LCRRMLVGIKDGRFFLGSFHCIDKQGNIILQD 64 (114)
Q Consensus 33 l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsd 64 (114)
+|++|++...++ +.|++.|+|.++.|++..
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEEC
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 799999988777 999999999999999974
No 49
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=79.52 E-value=2.6 Score=31.08 Aligned_cols=28 Identities=21% Similarity=0.289 Sum_probs=24.7
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEecCccceEecc
Q 033666 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQD 64 (114)
Q Consensus 32 ~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsd 64 (114)
++|++|+| +| +.|++.|+|..+.|++..
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 47899999 56 999999999999999964
No 50
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=77.41 E-value=2.6 Score=32.82 Aligned_cols=32 Identities=25% Similarity=0.410 Sum_probs=26.8
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEecCccceEecc
Q 033666 32 LLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQD 64 (114)
Q Consensus 32 ~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsd 64 (114)
++|++|+|... +..+.|+..|+|..+.|++.+
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 56899999764 567999999999999999963
No 51
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=70.74 E-value=5.9 Score=23.99 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=27.5
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCcc---ceEecccEEEe
Q 033666 33 LCRRMLVGIKDGRFFLGSFHCIDKQG---NIILQDAVEYR 69 (114)
Q Consensus 33 l~k~V~V~L~dGR~i~G~L~~~D~~~---NLvLsda~E~~ 69 (114)
.|..|.+.-+|||.|-|++..+|+.. =+...|-.+++
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W 45 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFL 45 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEE
Confidence 47789999999999999999998663 23334555544
No 52
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=66.40 E-value=5.3 Score=26.42 Aligned_cols=18 Identities=22% Similarity=0.527 Sum_probs=15.9
Q ss_pred CCeEEEEEcCCeEEEEEE
Q 033666 34 CRRMLVGIKDGRFFLGSF 51 (114)
Q Consensus 34 ~k~V~V~L~dGR~i~G~L 51 (114)
..+|++.|.||+.+.|++
T Consensus 28 q~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 28 QERVRIELDDGSMIAGTV 45 (101)
T ss_dssp TCEEEEEETTSCEEEEEE
T ss_pred eeEEEEEEcCCCeEeeee
Confidence 358999999999999996
No 53
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=52.46 E-value=12 Score=24.46 Aligned_cols=29 Identities=14% Similarity=0.207 Sum_probs=24.8
Q ss_pred HHHHHHhcCCeEEEEEcCCe----EEEEEEEEe
Q 033666 26 ISRVRKLLCRRMLVGIKDGR----FFLGSFHCI 54 (114)
Q Consensus 26 ~~~L~~~l~k~V~V~L~dGR----~i~G~L~~~ 54 (114)
...|..++|++|.++.+.|| +-.|+|...
T Consensus 17 K~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 17 KEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 46789999999999999999 458888765
No 54
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=51.20 E-value=20 Score=28.82 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=26.9
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEeccc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda 65 (114)
..+.|.+.||+.+.+.+.++|...+|-|=..
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 3789999999999999999999999876533
No 55
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=50.99 E-value=21 Score=28.42 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=27.2
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEeccc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda 65 (114)
.++.|.+.||+.+.+.+.++|...+|-|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999998876544
No 56
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=50.86 E-value=1 Score=30.07 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=26.8
Q ss_pred HHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEE
Q 033666 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVE 67 (114)
Q Consensus 28 ~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E 67 (114)
.-..++..-|...-.||. ++.+||+..|+.|.+|..
T Consensus 18 ~~Ael~s~lVeWqY~d~~----~~~~FDk~TNl~LEeA~~ 53 (99)
T 1x4r_A 18 SQADYISTYVEWQYIDKN----ITQCFDKMTNMKLEVAWK 53 (99)
T ss_dssp HHHHHHHTSCEEEEECSS----CEEECCTTHHHHHHHHHH
T ss_pred HHHHHHHHhhEEEEeCCC----eEeechHHHHHHHHHHHH
Confidence 334555566777777654 469999999999999874
No 57
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=48.41 E-value=25 Score=21.65 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.7
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCc
Q 033666 33 LCRRMLVGIKDGRFFLGSFHCIDKQ 57 (114)
Q Consensus 33 l~k~V~V~L~dGR~i~G~L~~~D~~ 57 (114)
.|.-|+..-.||+.|.|++..+++.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5888999999999999999999964
No 58
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=44.92 E-value=10 Score=24.28 Aligned_cols=40 Identities=20% Similarity=0.376 Sum_probs=29.6
Q ss_pred HHhcCCeEEEEEcCCeEEEEEEEEecCcc---ceEecccEEEe
Q 033666 30 RKLLCRRMLVGIKDGRFFLGSFHCIDKQG---NIILQDAVEYR 69 (114)
Q Consensus 30 ~~~l~k~V~V~L~dGR~i~G~L~~~D~~~---NLvLsda~E~~ 69 (114)
.=..|.-|.++-+|||.|-|++.-+|+.. =+...|-.+++
T Consensus 26 ~f~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W 68 (79)
T 2m0o_A 26 RLWEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFL 68 (79)
T ss_dssp CCCTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred eeccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEE
Confidence 44579999999999999999999888542 23335555544
No 59
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=42.30 E-value=14 Score=22.66 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=19.3
Q ss_pred CeEEEEEcCCeEEEEEEEEecCc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQ 57 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~ 57 (114)
.+|+|++.||+.++++|...|.-
T Consensus 8 ~~i~iRlpdG~r~~~~F~~~~tl 30 (84)
T 3qx1_A 8 SKLRIRTPSGEFLERRFLASNKL 30 (84)
T ss_dssp EEEEEECTTSCEEEEEEETTSBH
T ss_pred EEEEEECCCCCEEEEEeCCCCCH
Confidence 47899999999999999876653
No 60
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=41.23 E-value=31 Score=26.61 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=25.6
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEec
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQ 63 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLs 63 (114)
.++.|.+.||+.+.+.+.++|...+|-|=
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlL 116 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALL 116 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEE
Confidence 47889999999999999999999888654
No 61
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=38.89 E-value=34 Score=25.13 Aligned_cols=30 Identities=27% Similarity=0.434 Sum_probs=25.5
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEecc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQD 64 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLsd 64 (114)
.++.|.+.||+.+.+.+.++|....|-|=.
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 117 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQ 117 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEE
Confidence 478999999999999999999988886543
No 62
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=38.52 E-value=35 Score=23.29 Aligned_cols=24 Identities=13% Similarity=0.183 Sum_probs=21.5
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEec
Q 033666 32 LLCRRMLVGIKDGRFFLGSFHCID 55 (114)
Q Consensus 32 ~l~k~V~V~L~dGR~i~G~L~~~D 55 (114)
-.|..|.|.-.||..|.|+|.|.-
T Consensus 66 ~~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 66 AEGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCCEEEEEcCCCCEEeEEEeeee
Confidence 358899999999999999999974
No 63
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=38.44 E-value=28 Score=27.97 Aligned_cols=31 Identities=16% Similarity=0.230 Sum_probs=26.6
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEeccc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda 65 (114)
.++.|.+.||+.+.+.+.++|...+|-|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 4688999999999999999999999876543
No 64
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=37.16 E-value=38 Score=22.98 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=21.6
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecC
Q 033666 33 LCRRMLVGIKDGRFFLGSFHCIDK 56 (114)
Q Consensus 33 l~k~V~V~L~dGR~i~G~L~~~D~ 56 (114)
+|.+|..+-++||.|.|+..+...
T Consensus 8 vGq~V~akh~ngryy~~~V~~~~~ 31 (118)
T 2qqr_A 8 AGQKVISKHKNGRFYQCEVVRLTT 31 (118)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEEE
T ss_pred cCCEEEEECCCCCEEeEEEEEEee
Confidence 689999999999999999988754
No 65
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=36.92 E-value=17 Score=23.20 Aligned_cols=55 Identities=15% Similarity=0.082 Sum_probs=37.4
Q ss_pred HHHHhcCCeEEEEEcCCeEEEEEEEEecCccceEecccEEEeecCCCCCCCCceEeeeEEEEcCCCEEEE
Q 033666 28 RVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNIILQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSC 97 (114)
Q Consensus 28 ~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda~E~~~~~~~~~~~~~~r~lG~vlIrG~~Iv~I 97 (114)
++....+..++|+++||..+.|+.. .+.-.+-.|+.... ..-|...||=++|.++
T Consensus 19 ElAc~~~~~l~l~l~dGe~~~g~a~------D~~~~~k~E~L~l~---------~~~~~~~irLD~I~s~ 73 (86)
T 1sg5_A 19 ELACQHHLMLTLELKDGEKLQAKAS------DLVSRKNVEYLVVE---------AAGETRELRLDKITSF 73 (86)
T ss_dssp HHHHTTTTCEEEECTTTCCEEESSC------EEECCSSSCEEEEE---------ETTEEEEESTTCCSEE
T ss_pred HHHHHcCCeEEEEEeCCCEEEEEEE------eeEEcCceEEEEEE---------cCCCEEEEEchhhhhc
Confidence 5677789999999999999888632 33444455554321 1235667888888877
No 66
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=35.81 E-value=42 Score=22.76 Aligned_cols=24 Identities=17% Similarity=0.160 Sum_probs=21.1
Q ss_pred hcCCeEEEEEcCCeEEEEEEEEec
Q 033666 32 LLCRRMLVGIKDGRFFLGSFHCID 55 (114)
Q Consensus 32 ~l~k~V~V~L~dGR~i~G~L~~~D 55 (114)
-.|..|.|.-.||..|-|+|+|.-
T Consensus 65 ~~G~~V~V~W~DG~~y~a~f~g~~ 88 (118)
T 2qqr_A 65 AEGEVVQVRWTDGQVYGAKFVASH 88 (118)
T ss_dssp CTTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCCEEEEEcCCCCEeeeEEecee
Confidence 358899999999999999999854
No 67
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=33.71 E-value=9.9 Score=26.83 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=15.9
Q ss_pred CeEEEEEcCCeEEEEEEEEecCc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQ 57 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~ 57 (114)
.+|+-.+.|||+|.+.|.|.|.|
T Consensus 399 ~~v~~Vi~~G~vv~~~l~g~~G~ 421 (426)
T 3mkv_A 399 EHIPLVMKDGRLFVNELEGHEGH 421 (426)
T ss_dssp TTCCEEEETTEEEEECCC-----
T ss_pred CCccEEEECCEEEECCccCCCCC
Confidence 45788899999999999998866
No 68
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=32.98 E-value=58 Score=23.28 Aligned_cols=30 Identities=20% Similarity=0.408 Sum_probs=26.1
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEecc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQD 64 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLsd 64 (114)
.++.|.+.||+.+.+.+.++|...+|-|=.
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~ 106 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLK 106 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEE
Confidence 578999999999999999999988876643
No 69
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=32.60 E-value=53 Score=24.63 Aligned_cols=30 Identities=20% Similarity=0.127 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCeEEEEEEEEecCccceEec
Q 033666 34 CRRMLVGIKDGRFFLGSFHCIDKQGNIILQ 63 (114)
Q Consensus 34 ~k~V~V~L~dGR~i~G~L~~~D~~~NLvLs 63 (114)
...+.|.+.||+.+.+.+.++|...+|-|=
T Consensus 63 ~~~i~V~~~~g~~~~a~vv~~d~~~DlAll 92 (324)
T 1y8t_A 63 PPKTTVTFSDGRTAPFTVVGADPTSDIAVV 92 (324)
T ss_dssp -CEEEEEETTCCEECEEEEECCTTTTEEEE
T ss_pred ceEEEEEeCCCCEEEEEEEEeCCCCCEEEE
Confidence 458999999999999999999998887764
No 70
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=32.23 E-value=40 Score=21.78 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=29.3
Q ss_pred chHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceE
Q 033666 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNII 61 (114)
Q Consensus 24 ~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLv 61 (114)
....+-.-|+||++--..+.|+.++|...---.....+
T Consensus 30 ~~~~~a~fylGKrvayv~~~g~~iwGKVtr~HGnsGvV 67 (87)
T 3j21_c 30 NSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAV 67 (87)
T ss_dssp CSHHHHGGGTTCEEEECCSSSCCEEEEEEEECCSSSCE
T ss_pred CCHHHHHhhcCceEEEEeCCCCEEEEEEEeeeCCCCeE
Confidence 44567788999999999999999999987654443333
No 71
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=32.14 E-value=55 Score=24.57 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=26.3
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEeccc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda 65 (114)
..+.|.+.||+.+.+.+.++|...+|-|=..
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 3689999999999999999999888876533
No 72
>1sqr_A 50S ribosomal protein L35AE; PFR48, structure, autostructure, northeast structural genomics consortium, beta-barrel; NMR {Pyrococcus furiosus} SCOP: b.43.3.3 PDB: 2lp6_A
Probab=32.02 E-value=42 Score=22.01 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=29.6
Q ss_pred chHHHHHHhcCCeEEEEEcCCeEEEEEEEEecCccceE
Q 033666 24 NHISRVRKLLCRRMLVGIKDGRFFLGSFHCIDKQGNII 61 (114)
Q Consensus 24 ~~~~~L~~~l~k~V~V~L~dGR~i~G~L~~~D~~~NLv 61 (114)
.....-.-|+||+|-..-+.+|+++|...---.....|
T Consensus 30 ~~k~~a~fYlGKrvayvyka~rviwGKVtR~HGnsGvV 67 (95)
T 1sqr_A 30 NSREEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGAV 67 (95)
T ss_dssp CCHHHHHHHTTCEEEECCSTTCCEEEEEEEESSSSSCE
T ss_pred CCHHHHHhhcCCeEEEEECCCCEEEEEEEeeeCCCCEE
Confidence 34566788999999999999999999987655444444
No 73
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=32.01 E-value=61 Score=23.19 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=27.1
Q ss_pred CCeEEEEEcCCeEEEEEEEEecCccceEeccc
Q 033666 34 CRRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65 (114)
Q Consensus 34 ~k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda 65 (114)
...+.|.+.||+.+.+.+.++|....|-|=..
T Consensus 86 ~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 86 KHRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SSEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 35789999999999999999999888776433
No 74
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=30.70 E-value=27 Score=23.36 Aligned_cols=24 Identities=13% Similarity=0.041 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCeEEEEEEEEecCc
Q 033666 34 CRRMLVGIKDGRFFLGSFHCIDKQ 57 (114)
Q Consensus 34 ~k~V~V~L~dGR~i~G~L~~~D~~ 57 (114)
..+|+|+|-||..++++|...|..
T Consensus 43 ~t~IqIRlPdG~rl~~rF~~~~tl 66 (124)
T 1wj4_A 43 KAQLMLRYPDGKREQITLPEQAKL 66 (124)
T ss_dssp EEEEEEECTTSCEEEEEEETTSCH
T ss_pred cEEEEEECCCCCEEEEEeCCCCCH
Confidence 468999999999999999887743
No 75
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=30.50 E-value=62 Score=24.42 Aligned_cols=31 Identities=19% Similarity=0.283 Sum_probs=26.3
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEeccc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQDA 65 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLsda 65 (114)
.++.|.+.||+.+.+.+.++|....|-|=..
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 4789999999999999999998888776433
No 76
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=29.77 E-value=38 Score=22.00 Aligned_cols=23 Identities=22% Similarity=0.307 Sum_probs=19.4
Q ss_pred CCeEEEEEcCCeEEEEEEEEecC
Q 033666 34 CRRMLVGIKDGRFFLGSFHCIDK 56 (114)
Q Consensus 34 ~k~V~V~L~dGR~i~G~L~~~D~ 56 (114)
..+|+|++-||+.++++|..-|.
T Consensus 13 ~t~IqIRlpdG~rl~~rF~~~~t 35 (109)
T 2dzk_A 13 IARIQFRLPDGSSFTNQFPSDAP 35 (109)
T ss_dssp CEEEEEECSSSCEEEEEECTTSB
T ss_pred cEEEEEECCCCCEEEEEeCCCCC
Confidence 36899999999999999876553
No 77
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=29.69 E-value=33 Score=22.24 Aligned_cols=24 Identities=13% Similarity=0.108 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCeEEEEEEEEecCc
Q 033666 34 CRRMLVGIKDGRFFLGSFHCIDKQ 57 (114)
Q Consensus 34 ~k~V~V~L~dGR~i~G~L~~~D~~ 57 (114)
..+|.|+|-||+.++.+|..-|.-
T Consensus 23 ~~~IqiRlpdG~r~~rrF~~~~tl 46 (109)
T 2cr5_A 23 VVTVALRCPNGRVLRRRFFKSWNS 46 (109)
T ss_dssp EEEEEEECTTSCEEEEEEESSSBT
T ss_pred cEEEEEECCCCCEEEEEeCCCCCH
Confidence 468999999999999999887754
No 78
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.18 E-value=77 Score=19.57 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=29.3
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCcc---ceEecccEEEee
Q 033666 33 LCRRMLVGIKDGRFFLGSFHCIDKQG---NIILQDAVEYRS 70 (114)
Q Consensus 33 l~k~V~V~L~dGR~i~G~L~~~D~~~---NLvLsda~E~~~ 70 (114)
.+.-|...-+||+.|-|++.-+|.+. =+...|..+++.
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~wv 52 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFLV 52 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEEE
T ss_pred cCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCeeee
Confidence 57889999999999999999999542 234467776653
No 79
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=29.05 E-value=49 Score=27.61 Aligned_cols=29 Identities=17% Similarity=0.209 Sum_probs=24.7
Q ss_pred CeEEEEEc-CCeEEEEEEEEecCccceEec
Q 033666 35 RRMLVGIK-DGRFFLGSFHCIDKQGNIILQ 63 (114)
Q Consensus 35 k~V~V~L~-dGR~i~G~L~~~D~~~NLvLs 63 (114)
..+.|++. |||.|.+++.++|....|-|=
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvL 126 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALL 126 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEE
Confidence 46788885 999999999999999888653
No 80
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=27.56 E-value=34 Score=25.07 Aligned_cols=21 Identities=14% Similarity=0.338 Sum_probs=18.4
Q ss_pred hcCCeEEEEEcCCeEEEEEEE
Q 033666 32 LLCRRMLVGIKDGRFFLGSFH 52 (114)
Q Consensus 32 ~l~k~V~V~L~dGR~i~G~L~ 52 (114)
.+|..|+|++..||++.|+..
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~ 189 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVD 189 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEEC
T ss_pred CCCCEEEEECCCCCEEEEEEe
Confidence 479999999999999999954
No 81
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=25.85 E-value=55 Score=24.87 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=17.6
Q ss_pred CeEEEEEEEEecCccceEecc
Q 033666 44 GRFFLGSFHCIDKQGNIILQD 64 (114)
Q Consensus 44 GR~i~G~L~~~D~~~NLvLsd 64 (114)
+..+.|...-+|.|+|++.+=
T Consensus 171 ~~~i~g~V~~iD~FGN~iTnI 191 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILNL 191 (259)
T ss_dssp TTEEEEEEEEECTTCCEEESC
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 346889999999999998653
No 82
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.34 E-value=57 Score=19.89 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=28.0
Q ss_pred cCCeEEEEEcCCeEEEEEEEEecCc---cceEecccEEEe
Q 033666 33 LCRRMLVGIKDGRFFLGSFHCIDKQ---GNIILQDAVEYR 69 (114)
Q Consensus 33 l~k~V~V~L~dGR~i~G~L~~~D~~---~NLvLsda~E~~ 69 (114)
.+.-|...-+||+.|-|++.-+|.. +=+...|..+++
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~~~~ClV~FeD~s~~w 49 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYW 49 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCSTTSEEEEEETTSCEEE
T ss_pred cCCEEEEEecCCCEEEEEEEEEecCCCEEEEEEccCceeE
Confidence 4788999999999999999999954 333445555554
No 83
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=24.86 E-value=27 Score=23.43 Aligned_cols=23 Identities=13% Similarity=0.338 Sum_probs=19.4
Q ss_pred CCeEEEEEcCCeEEEEEEEEecC
Q 033666 34 CRRMLVGIKDGRFFLGSFHCIDK 56 (114)
Q Consensus 34 ~k~V~V~L~dGR~i~G~L~~~D~ 56 (114)
..+|+|+|-||..++++|...|.
T Consensus 52 ~t~IqIRlpdG~rl~~rF~~~~t 74 (127)
T 1s3s_G 52 TTNIQIRLADGGRLVQKFNHSHR 74 (127)
T ss_dssp CCCEEEEETTTTEEEEECCSSCB
T ss_pred cEEEEEECCCCCEEEEEeCCCCC
Confidence 47899999999999999876553
No 84
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=24.60 E-value=59 Score=24.71 Aligned_cols=20 Identities=20% Similarity=0.365 Sum_probs=17.2
Q ss_pred CeEEEEEEEEecCccceEec
Q 033666 44 GRFFLGSFHCIDKQGNIILQ 63 (114)
Q Consensus 44 GR~i~G~L~~~D~~~NLvLs 63 (114)
+..+.|...-+|.|+|++.+
T Consensus 167 ~~~i~g~V~~iD~FGN~iTn 186 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTN 186 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 44688999999999999865
No 85
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=24.53 E-value=83 Score=23.94 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=26.2
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEecc
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQD 64 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLsd 64 (114)
.++.|.+.||+.+.+.+.++|...+|-|=.
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLk 106 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLR 106 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEE
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEE
Confidence 578999999999999999999988877643
No 86
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=23.85 E-value=1.5e+02 Score=20.28 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=21.9
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEec
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQ 63 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLs 63 (114)
..+.|.+ ||+.+..++. +|....|-|=
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAlL 69 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAFI 69 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEEE
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEEE
Confidence 4678888 9999999999 8887776553
No 87
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=23.71 E-value=1.2e+02 Score=22.85 Aligned_cols=29 Identities=24% Similarity=0.452 Sum_probs=25.7
Q ss_pred CeEEEEEcCCeEEEEEEEEecCccceEec
Q 033666 35 RRMLVGIKDGRFFLGSFHCIDKQGNIILQ 63 (114)
Q Consensus 35 k~V~V~L~dGR~i~G~L~~~D~~~NLvLs 63 (114)
..+.|.+.||+.+.+.+.++|...+|-|=
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL 98 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALI 98 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEE
Confidence 47899999999999999999998887664
No 88
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=21.14 E-value=65 Score=25.00 Aligned_cols=24 Identities=13% Similarity=0.056 Sum_probs=19.5
Q ss_pred HhcCCeEEEEEcCCeEEEEEEEEe
Q 033666 31 KLLCRRMLVGIKDGRFFLGSFHCI 54 (114)
Q Consensus 31 ~~l~k~V~V~L~dGR~i~G~L~~~ 54 (114)
-+.+++|+|..++|+.|.|++-..
T Consensus 96 ~~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 96 VVSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp TCSSCEEEEECTTSCEEEEEEC--
T ss_pred ccCCCEEEEEcCCCCEEEEEEeCc
Confidence 567999999999999999997543
Done!