BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033667
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8S2E6|Y1235_ORYSJ B3 domain-containing protein Os01g0723500 OS=Oryza sativa subsp.
japonica GN=Os01g0723500 PE=2 SV=1
Length = 402
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 45 SSSSSFKPARSVSIRRMLAVLQDMPSGGEPSPSPKDMQQSPTPAPTG-----DIDDSIIT 99
+S + +P + S+ + + + PSGG+P D +P P T D D+ +
Sbjct: 149 ASRDAARPKKD-SVGKEMVTYRASPSGGQPL-QIVDSSWTPEPGSTAVKNEEDADELPVC 206
Query: 100 QLPAVSASSPIH 111
+LPA SAS P H
Sbjct: 207 ELPASSASPPRH 218
>sp|Q6INA9|SETB1_XENLA Histone-lysine N-methyltransferase SETDB1 OS=Xenopus laevis
GN=setdb1 PE=2 SV=1
Length = 1269
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 14/86 (16%)
Query: 27 LILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDMPSGGEPSPSPKDMQQSPT 86
LI + S S +++KK + S+SF+P + S G+ SP P + P
Sbjct: 456 LIDTDSDSQQAQSKKQVAKKSTSFRPGSAGS--------------GQSSPIPTESVPQPP 501
Query: 87 PAPTGDIDDSIITQLPAVSASSPIHH 112
AP + + + ++ PIH+
Sbjct: 502 AAPRPFQSNQSVQPVQSIQPIQPIHN 527
>sp|A5VTB2|IF2_BRUO2 Translation initiation factor IF-2 OS=Brucella ovis (strain ATCC
25840 / 63/290 / NCTC 10512) GN=infB PE=3 SV=2
Length = 959
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 69 PSGGEPSPSPKDMQQSPTPAP 89
P GG P P+ + Q SP PAP
Sbjct: 255 PQGGRPQPAGRPQQGSPRPAP 275
>sp|Q8FXT2|IF2_BRUSU Translation initiation factor IF-2 OS=Brucella suis biovar 1
(strain 1330) GN=infB PE=3 SV=1
Length = 959
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 69 PSGGEPSPSPKDMQQSPTPAP 89
P GG P P+ + Q SP PAP
Sbjct: 255 PQGGRPQPAGRPQQGSPRPAP 275
>sp|B0CK11|IF2_BRUSI Translation initiation factor IF-2 OS=Brucella suis (strain ATCC
23445 / NCTC 10510) GN=infB PE=3 SV=1
Length = 959
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 69 PSGGEPSPSPKDMQQSPTPAP 89
P GG P P+ + Q SP PAP
Sbjct: 255 PQGGRPQPAGRPQQGSPRPAP 275
>sp|Q8YEB3|IF2_BRUME Translation initiation factor IF-2 OS=Brucella melitensis biotype 1
(strain 16M / ATCC 23456 / NCTC 10094) GN=infB PE=3 SV=2
Length = 959
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 69 PSGGEPSPSPKDMQQSPTPAP 89
P GG P P+ + Q SP PAP
Sbjct: 255 PQGGRPQPAGRPQQGSPRPAP 275
>sp|A9M9Z4|IF2_BRUC2 Translation initiation factor IF-2 OS=Brucella canis (strain ATCC
23365 / NCTC 10854) GN=infB PE=3 SV=1
Length = 959
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 69 PSGGEPSPSPKDMQQSPTPAP 89
P GG P P+ + Q SP PAP
Sbjct: 255 PQGGRPQPAGRPQQGSPRPAP 275
>sp|Q57AA0|IF2_BRUAB Translation initiation factor IF-2 OS=Brucella abortus biovar 1
(strain 9-941) GN=infB PE=3 SV=1
Length = 959
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 69 PSGGEPSPSPKDMQQSPTPAP 89
P GG P P+ + Q SP PAP
Sbjct: 255 PQGGRPQPAGRPQQGSPRPAP 275
>sp|Q2YQR7|IF2_BRUA2 Translation initiation factor IF-2 OS=Brucella abortus (strain
2308) GN=infB PE=3 SV=1
Length = 959
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 69 PSGGEPSPSPKDMQQSPTPAP 89
P GG P P+ + Q SP PAP
Sbjct: 255 PQGGRPQPAGRPQQGSPRPAP 275
>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4
Length = 34350
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 55 SVSIRRMLAVLQDMPSGGEPSPSPKDMQQSPTPAPTGDIDDSI-ITQLPAVSASSPIHHR 113
S++ + LA Q PS SPSP ++PTP+P + + I+ P S SP+ R
Sbjct: 270 SIAAKAQLA-RQQSPSPIRHSPSPVRHVRAPTPSPVRSVSPAARISTSPIRSVRSPLLMR 328
Query: 114 R 114
+
Sbjct: 329 K 329
>sp|Q8BIY1|GPTC3_MOUSE G patch domain-containing protein 3 OS=Mus musculus GN=Gpatch3 PE=2
SV=1
Length = 525
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 22/87 (25%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 22 QALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDMPSGGEPSPSPKDM 81
++ VYL++S ++ + +RS S F+ R + + P G P SP+
Sbjct: 10 ESPVYLVVSGIPAVLRSAQ--LRSYFSQFREQRGGGF--LCFHYRHRPERGPPQASPEAA 65
Query: 82 QQSPTPAPTGDIDDSIITQLPAVSASS 108
+ P PA +D ++ Q PA A +
Sbjct: 66 RAGPDPAA----EDPVLAQAPASDARA 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,937,676
Number of Sequences: 539616
Number of extensions: 1473264
Number of successful extensions: 8420
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 8303
Number of HSP's gapped (non-prelim): 147
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)