Query 033667
Match_columns 114
No_of_seqs 36 out of 38
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 04:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033667.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033667hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10669 Phage_Gp23: Protein g 42.1 32 0.0007 26.0 3.1 21 10-30 11-31 (121)
2 COG3344 Retron-type reverse tr 36.2 55 0.0012 25.8 3.7 49 19-75 130-178 (328)
3 PF09125 COX2-transmemb: Cytoc 30.8 66 0.0014 20.3 2.7 16 14-29 15-30 (38)
4 KOG3268 Predicted E3 ubiquitin 29.1 28 0.0006 28.8 1.0 15 49-63 77-91 (234)
5 PF05546 She9_MDM33: She9 / Md 22.4 86 0.0019 25.4 2.7 19 7-25 155-173 (207)
6 KOG0581 Mitogen-activated prot 19.4 1.1E+02 0.0024 26.8 2.8 28 1-28 157-195 (364)
7 PF14019 DUF4235: Protein of u 16.8 1.9E+02 0.0041 19.3 3.0 23 8-30 39-61 (78)
8 PF13061 DUF3923: Protein of u 16.2 1.6E+02 0.0034 19.7 2.4 17 15-31 50-66 (66)
9 PF01690 PLRV_ORF5: Potato lea 15.2 1.3E+02 0.0028 27.1 2.4 8 83-90 19-26 (465)
10 PHA00476 hypothetical protein 15.1 1.1E+02 0.0024 23.0 1.7 48 14-65 3-56 (110)
No 1
>PF10669 Phage_Gp23: Protein gp23 (Bacteriophage A118); InterPro: IPR018926 This entry is represented by the major tail subunit protein, Gp23 of Listeria phage A118 and prophage found in Bacilli. The function is currently unknown.
Probab=42.15 E-value=32 Score=26.02 Aligned_cols=21 Identities=29% Similarity=0.517 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 033667 10 DMLMKVALFGVVQALVYLILS 30 (114)
Q Consensus 10 d~L~KvavFvlVQaLVYLILs 30 (114)
-+|+|...|+..-..|||||-
T Consensus 11 yal~K~~~FA~L~i~~FiILL 31 (121)
T PF10669_consen 11 YALTKIMFFAFLFIVVFIILL 31 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578999999888888888874
No 2
>COG3344 Retron-type reverse transcriptase [DNA replication, recombination, and repair]
Probab=36.21 E-value=55 Score=25.80 Aligned_cols=49 Identities=31% Similarity=0.362 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHhcCCCceecCccccccCCCccCcchhhhHHHHHHHhhcCCCCCCCC
Q 033667 19 GVVQALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVLQDMPSGGEPS 75 (114)
Q Consensus 19 vlVQaLVYLILs~SS~VFS~~~~~~~~rS~SFrpaRS~SiRRmlA~LsD~P~GgEpS 75 (114)
.+||.+.-++|.. +|-.... .+|.||||.|+.+ -..+..-+.|.++--+
T Consensus 130 ~~vq~~~~~~l~~---~~~~~f~---~~s~Gf~~~~~~~--~a~~~~~~~~~~~~~~ 178 (328)
T COG3344 130 RIVQSAFPIILEP---IIENIFS---PLSYGFRPGPSAS--NAIAYAFDLPQGKICS 178 (328)
T ss_pred HHHHHHHHHHHHH---HHHhccc---cCCCCCCCChhHH--HHHHHHHhhhccCCCC
Confidence 3567777777777 3443322 5899999999988 6666666666655433
No 3
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=30.83 E-value=66 Score=20.28 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 033667 14 KVALFGVVQALVYLIL 29 (114)
Q Consensus 14 KvavFvlVQaLVYLIL 29 (114)
+..+|.|+-.+||++|
T Consensus 15 ~Wi~F~l~mi~vFi~l 30 (38)
T PF09125_consen 15 GWIAFALAMILVFIAL 30 (38)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4568999999999987
No 4
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.07 E-value=28 Score=28.84 Aligned_cols=15 Identities=47% Similarity=0.589 Sum_probs=13.3
Q ss_pred ccCcchhhhHHHHHH
Q 033667 49 SFKPARSVSIRRMLA 63 (114)
Q Consensus 49 SFrpaRS~SiRRmlA 63 (114)
-|+|+|+..+||+.|
T Consensus 77 ~ekP~RaaaaRRIa~ 91 (234)
T KOG3268|consen 77 LEKPARAAAARRIAA 91 (234)
T ss_pred ccCCchHHHHHHhhc
Confidence 479999999999976
No 5
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=22.38 E-value=86 Score=25.42 Aligned_cols=19 Identities=42% Similarity=0.233 Sum_probs=15.3
Q ss_pred hhhHHHHHHHHHHHHHHHH
Q 033667 7 LNHDMLMKVALFGVVQALV 25 (114)
Q Consensus 7 s~~d~L~KvavFvlVQaLV 25 (114)
..+=|-++|.+|+++|.+|
T Consensus 155 T~~lmgvNvllFl~~~~~~ 173 (207)
T PF05546_consen 155 TWGLMGVNVLLFLVAQLLV 173 (207)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456778999999999876
No 6
>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]
Probab=19.40 E-value=1.1e+02 Score=26.79 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=18.5
Q ss_pred Cccccc-hhhHHHHH----------HHHHHHHHHHHHHH
Q 033667 1 MMIEEW-LNHDMLMK----------VALFGVVQALVYLI 28 (114)
Q Consensus 1 m~~me~-s~~d~L~K----------vavFvlVQaLVYLI 28 (114)
|..|+. |+.++|.+ -....++|+|.||=
T Consensus 157 mEYMDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh 195 (364)
T KOG0581|consen 157 MEYMDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLH 195 (364)
T ss_pred hhhcCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 556776 55544442 24578999999985
No 7
>PF14019 DUF4235: Protein of unknown function (DUF4235)
Probab=16.80 E-value=1.9e+02 Score=19.34 Aligned_cols=23 Identities=13% Similarity=0.309 Sum_probs=17.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 033667 8 NHDMLMKVALFGVVQALVYLILS 30 (114)
Q Consensus 8 ~~d~L~KvavFvlVQaLVYLILs 30 (114)
....+..+.+|+++|+.++-..+
T Consensus 39 ~~~~~~e~l~~Aaisgav~avv~ 61 (78)
T PF14019_consen 39 PDRSLREALAFAAISGAVFAVVR 61 (78)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH
Confidence 34567888899999999986654
No 8
>PF13061 DUF3923: Protein of unknown function (DUF3923)
Probab=16.17 E-value=1.6e+02 Score=19.68 Aligned_cols=17 Identities=18% Similarity=0.397 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHhc
Q 033667 15 VALFGVVQALVYLILSK 31 (114)
Q Consensus 15 vavFvlVQaLVYLILs~ 31 (114)
++.++++|...|+|+.+
T Consensus 50 ~~~i~i~q~Iw~~i~k~ 66 (66)
T PF13061_consen 50 FIIILIIQLIWLIILKR 66 (66)
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 45667889999998864
No 9
>PF01690 PLRV_ORF5: Potato leaf roll virus readthrough protein; InterPro: IPR002929 This family consists mainly of the Potato leafroll virus (PLrV) read through protein otherwise known as the minor capsid protein. This is generated via a readthrough of open reading frame 3, the coat protein, allowing transcription of open reading frame 5 to give an extended coat protein with a large C-terminal addition or read through domain []. The read through protein is essential for the circulative aphid transmission of PLrV [] and Beet western yellows virus []. The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid [].; GO: 0019028 viral capsid
Probab=15.19 E-value=1.3e+02 Score=27.14 Aligned_cols=8 Identities=63% Similarity=1.194 Sum_probs=4.1
Q ss_pred CCCCCCCC
Q 033667 83 QSPTPAPT 90 (114)
Q Consensus 83 ~~~~~~~~ 90 (114)
++|+|+||
T Consensus 19 P~P~PePt 26 (465)
T PF01690_consen 19 PAPTPEPT 26 (465)
T ss_pred CcccCCCc
Confidence 44555554
No 10
>PHA00476 hypothetical protein
Probab=15.10 E-value=1.1e+02 Score=22.97 Aligned_cols=48 Identities=40% Similarity=0.416 Sum_probs=28.4
Q ss_pred HHHHHHHH------HHHHHHHHhcCCCceecCccccccCCCccCcchhhhHHHHHHHh
Q 033667 14 KVALFGVV------QALVYLILSKSSSIFSKNKKMIRSSSSSFKPARSVSIRRMLAVL 65 (114)
Q Consensus 14 KvavFvlV------QaLVYLILs~SS~VFS~~~~~~~~rS~SFrpaRS~SiRRmlA~L 65 (114)
|++.|++. ---=|||||-=.+|-||..-++ -.|+.| -|+-.-=+|..|
T Consensus 3 K~vLf~LLTyvvl~~cAn~lILSlp~sVtSK~icl~-lssfvf---sSvallvil~~L 56 (110)
T PHA00476 3 KVVLFLLLTYVVLVLCANYLILSLPLSVTSKGICLT-LSSFVF---SSVALLVILVLL 56 (110)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-HHHHHH---HHHHHHHHHHHH
Confidence 67777653 3334999999888888776432 134444 233333455555
Done!