Query 033667
Match_columns 114
No_of_seqs 36 out of 38
Neff 2.2
Searched_HMMs 29240
Date Mon Mar 25 07:43:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033667.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033667hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wx4_A DCP1, decapping protein 41.3 12 0.00041 23.3 1.5 13 20-32 14-26 (46)
2 2qkg_A Insecticidal delta-endo 39.8 6 0.00021 33.9 -0.0 23 85-107 435-457 (589)
3 1w99_A Pesticidial crystal pro 39.7 6.1 0.00021 33.7 -0.0 23 85-107 384-406 (558)
4 1ji6_A Pesticidial crystal pro 38.7 8.4 0.00029 32.7 0.7 22 86-107 437-458 (589)
5 2c9k_A Pesticidal crystal prot 38.3 8.4 0.00029 33.0 0.6 23 85-107 458-480 (612)
6 1ciy_A Cryia(A); toxin, ICP; 2 38.1 6.4 0.00022 33.4 -0.1 21 87-107 431-451 (590)
7 1dlc_A Delta-endotoxin CRYIIIA 29.2 11 0.00038 31.9 -0.1 22 86-107 437-458 (584)
8 2wx3_A MRNA-decapping enzyme 1 27.2 28 0.00095 22.1 1.5 12 20-31 16-27 (51)
9 1pfi_A Major coat protein of P 23.5 94 0.0032 19.3 3.4 25 7-31 21-45 (46)
10 3eb7_A Insecticidal delta-endo 20.6 21 0.00071 29.7 -0.0 23 86-108 436-458 (589)
No 1
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=41.28 E-value=12 Score=23.35 Aligned_cols=13 Identities=46% Similarity=0.675 Sum_probs=10.3
Q ss_pred HHHHHHHHHHhcC
Q 033667 20 VVQALVYLILSKS 32 (114)
Q Consensus 20 lVQaLVYLILs~S 32 (114)
++|||.|||=..+
T Consensus 14 l~qal~hLiknD~ 26 (46)
T 2wx4_A 14 FVQAFTYLIQNDK 26 (46)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCH
Confidence 6899999996544
No 2
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis} PDB: 3eb7_A
Probab=39.78 E-value=6 Score=33.86 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=19.8
Q ss_pred CCCCCCCCCcchhhhcccccccC
Q 033667 85 PTPAPTGDIDDSIITQLPAVSAS 107 (114)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ 107 (114)
-.+.++.-|+..-|||+|||-|.
T Consensus 435 ~Svd~~N~I~~d~ITQIPaVKa~ 457 (589)
T 2qkg_A 435 RSADRTNTVYSDKITQIPVVKAS 457 (589)
T ss_dssp TTSCSSCEECSSSEEEEEGGGCS
T ss_pred CCCCCCCcCCCCceeeecceeee
Confidence 45778888999999999999875
No 3
>1w99_A Pesticidial crystal protein CRY4BA; membrane pore, BIO-insecticide, dipteran specificity, conformational change; 1.75A {Bacillus thuringiensis serovarisraelensis}
Probab=39.67 E-value=6.1 Score=33.68 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=19.7
Q ss_pred CCCCCCCCCcchhhhcccccccC
Q 033667 85 PTPAPTGDIDDSIITQLPAVSAS 107 (114)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ 107 (114)
-.+.++..|+...|||+|||-|.
T Consensus 384 ~Svd~~N~I~~d~ITQIPaVKa~ 406 (558)
T 1w99_A 384 KIVDPNNQIYTDAITQVPAVKSN 406 (558)
T ss_dssp TTSCTTCEECSSSCEEEEGGGCS
T ss_pred cccCCCCeECCCceeeeeeEEee
Confidence 45778888999999999999884
No 4
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=38.73 E-value=8.4 Score=32.73 Aligned_cols=22 Identities=41% Similarity=0.383 Sum_probs=19.2
Q ss_pred CCCCCCCCcchhhhcccccccC
Q 033667 86 TPAPTGDIDDSIITQLPAVSAS 107 (114)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~ 107 (114)
.+.++..|+...|||+|||-|.
T Consensus 437 Svd~~N~I~~dkITQIPaVKa~ 458 (589)
T 1ji6_A 437 SVDFFNTIDAEKITQLPVVKAY 458 (589)
T ss_dssp TCCTTCBCCSSSEEEEEGGGCS
T ss_pred ccCCCCeECCCCceeeeeeEee
Confidence 4778888999999999999984
No 5
>2c9k_A Pesticidal crystal protein CRY4AA; toxin, insect toxin, bioinsecticicide, pore formation, receptor recognition, sporulation; 2.8A {Bacillus thuringiensis}
Probab=38.28 E-value=8.4 Score=33.01 Aligned_cols=23 Identities=35% Similarity=0.521 Sum_probs=19.4
Q ss_pred CCCCCCCCCcchhhhcccccccC
Q 033667 85 PTPAPTGDIDDSIITQLPAVSAS 107 (114)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~ 107 (114)
-.+.++..|+...|||+|||-|.
T Consensus 458 ~Svd~~N~I~~d~ITQIPaVKa~ 480 (612)
T 2c9k_A 458 SSVDPKNTIYTHLTTQIPAVKAN 480 (612)
T ss_dssp TTCCSSCCBCSSSEEEEEGGGCS
T ss_pred cCCCCCCeECCCCceeeceEEee
Confidence 34667888999999999999984
No 6
>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=38.13 E-value=6.4 Score=33.38 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=18.6
Q ss_pred CCCCCCCcchhhhcccccccC
Q 033667 87 PAPTGDIDDSIITQLPAVSAS 107 (114)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~ 107 (114)
+.++..|+...|||+|||-|.
T Consensus 431 vd~~N~I~~d~ITQIPaVKa~ 451 (590)
T 1ciy_A 431 AEFNNIIPSSQITQIPLTKST 451 (590)
T ss_dssp SCSSCEECSSSEEEEEGGGCS
T ss_pred CCCCCcCCCCCceeeeeEEee
Confidence 678888999999999999984
No 7
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Probab=29.19 E-value=11 Score=31.88 Aligned_cols=22 Identities=41% Similarity=0.329 Sum_probs=18.3
Q ss_pred CCCCCCCCcchhhhcccccccC
Q 033667 86 TPAPTGDIDDSIITQLPAVSAS 107 (114)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~ 107 (114)
.+.++..|+...|||+|||-|.
T Consensus 437 Svd~~N~I~~d~ITQIPaVKa~ 458 (584)
T 1dlc_A 437 SVDFFNMIDSKKITQLPLVKAY 458 (584)
T ss_dssp TCCTTCEECSSSEEEEEGGGCS
T ss_pred CCCCCCeECCCCceeeeeeEec
Confidence 4557888888899999999984
No 8
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=27.20 E-value=28 Score=22.08 Aligned_cols=12 Identities=25% Similarity=0.390 Sum_probs=9.6
Q ss_pred HHHHHHHHHHhc
Q 033667 20 VVQALVYLILSK 31 (114)
Q Consensus 20 lVQaLVYLILs~ 31 (114)
++|||.|||=..
T Consensus 16 l~qaLihLIqnD 27 (51)
T 2wx3_A 16 LQDTLIHLIKND 27 (51)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHcC
Confidence 689999999543
No 9
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=23.48 E-value=94 Score=19.33 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=19.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhc
Q 033667 7 LNHDMLMKVALFGVVQALVYLILSK 31 (114)
Q Consensus 7 s~~d~L~KvavFvlVQaLVYLILs~ 31 (114)
+.+...+-+.+..+|-+|+|-.|+|
T Consensus 21 si~~~IVGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 21 AIGGYIVGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456677777888899999988876
No 10
>3eb7_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus thuringiensis}
Probab=20.57 E-value=21 Score=29.70 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=18.1
Q ss_pred CCCCCCCCcchhhhcccccccCC
Q 033667 86 TPAPTGDIDDSIITQLPAVSASS 108 (114)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~ 108 (114)
.+.++..|....|||+|||-|..
T Consensus 436 Sv~~~N~I~~d~ITqIPAvKa~~ 458 (589)
T 3eb7_A 436 SADRTNTVYSDKITQIPVVKASD 458 (589)
T ss_dssp TSCSSCEECSSSEEEEEGGGCSS
T ss_pred CcCCCCeECCCCceeECchhhcc
Confidence 35567778888899999998853
Done!