Query 033667
Match_columns 114
No_of_seqs 36 out of 38
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 07:43:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033667.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/033667hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2aega1 d.303.1.1 (A:2-244) Hy 18.3 16 0.0012 25.2 0.7 18 96-114 179-196 (243)
2 d2gf4a1 a.8.10.1 (A:1-89) Nypo 13.3 49 0.0035 21.1 2.1 16 13-28 51-66 (89)
3 d2axtm1 f.23.35.1 (M:1-36) Pho 11.2 1.2E+02 0.0087 16.6 3.0 18 12-29 8-25 (36)
4 d1c0pa2 d.16.1.3 (A:1194-1288) 10.0 21 0.0015 20.6 -0.6 8 47-54 88-95 (95)
5 d2bdva1 d.303.1.1 (A:2-218) Ph 10.0 37 0.0027 23.1 0.6 18 96-114 147-164 (217)
6 d2gnoa1 a.80.1.1 (A:209-306) g 8.0 1E+02 0.0074 19.9 2.2 16 16-31 39-54 (98)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 7.9 1.6E+02 0.012 17.7 3.1 17 13-29 41-57 (107)
8 d1kifa2 d.16.1.3 (A:195-287) D 7.8 30 0.0022 19.7 -0.6 9 46-54 84-92 (93)
9 d1vlga_ a.25.1.1 (A:) Non-hem 6.3 2.8E+02 0.021 17.0 3.8 66 1-77 1-73 (164)
10 d2r9ga1 a.80.1.2 (A:238-423) U 6.1 1.4E+02 0.01 20.6 2.2 17 18-34 78-94 (186)
No 1
>d2aega1 d.303.1.1 (A:2-244) Hypothetical protein Atu5096 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=18.30 E-value=16 Score=25.24 Aligned_cols=18 Identities=22% Similarity=0.420 Sum_probs=13.7
Q ss_pred hhhhcccccccCCCCccCC
Q 033667 96 SIITQLPAVSASSPIHHRR 114 (114)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ 114 (114)
+|||. +|-..-++||||+
T Consensus 179 tIiT~-~An~~l~~iHdR~ 196 (243)
T d2aega1 179 GFLTT-DPNDLVKPIHEKA 196 (243)
T ss_dssp EEEEE-CCCTTTTTTCSSC
T ss_pred EEEec-cCcHHHHhhcCCC
Confidence 57776 4566789999994
No 2
>d2gf4a1 a.8.10.1 (A:1-89) Nypothetical protein Vng1086c {Halobacterium salinarium [TaxId: 2242]}
Probab=13.35 E-value=49 Score=21.06 Aligned_cols=16 Identities=31% Similarity=0.241 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 033667 13 MKVALFGVVQALVYLI 28 (114)
Q Consensus 13 ~KvavFvlVQaLVYLI 28 (114)
=|-|+|+|..+++=.+
T Consensus 51 Hk~AIF~L~~~Ia~~m 66 (89)
T d2gf4a1 51 HKHAVFLLGNALAAAM 66 (89)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4889999999987554
No 3
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=11.19 E-value=1.2e+02 Score=16.62 Aligned_cols=18 Identities=39% Similarity=0.648 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 033667 12 LMKVALFGVVQALVYLIL 29 (114)
Q Consensus 12 L~KvavFvlVQaLVYLIL 29 (114)
++--++|++|-....+||
T Consensus 8 ~iAt~LFilvPt~FLliL 25 (36)
T d2axtm1 8 LIATALFVLVPSVFLIIL 25 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 445688999998777776
No 4
>d1c0pa2 d.16.1.3 (A:1194-1288) D-aminoacid oxidase {Rhodotorula gracilis [TaxId: 5286]}
Probab=10.02 E-value=21 Score=20.63 Aligned_cols=8 Identities=38% Similarity=0.821 Sum_probs=6.3
Q ss_pred CCccCcch
Q 033667 47 SSSFKPAR 54 (114)
Q Consensus 47 S~SFrpaR 54 (114)
-.||||+|
T Consensus 88 ~~GlRP~R 95 (95)
T d1c0pa2 88 NVGLRPAR 95 (95)
T ss_dssp EEEEEEEE
T ss_pred EEEeCCCC
Confidence 35899987
No 5
>d2bdva1 d.303.1.1 (A:2-218) Phage-related hypothetical protein BB2244 {Bordetella bronchiseptica [TaxId: 518]}
Probab=9.95 E-value=37 Score=23.06 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=13.5
Q ss_pred hhhhcccccccCCCCccCC
Q 033667 96 SIITQLPAVSASSPIHHRR 114 (114)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~ 114 (114)
+||| .+|...-++||||.
T Consensus 147 ailT-~~a~~~~~~iH~Rm 164 (217)
T d2bdva1 147 AIVT-NDALGGMVDVHDRR 164 (217)
T ss_dssp EEEE-CGGGCCSSCTTSCC
T ss_pred EEEe-ccccchhhhhhccc
Confidence 5677 46667889999983
No 6
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=7.98 E-value=1e+02 Score=19.89 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHhc
Q 033667 16 ALFGVVQALVYLILSK 31 (114)
Q Consensus 16 avFvlVQaLVYLILs~ 31 (114)
-+|.|+|-++-.||-.
T Consensus 39 daflliq~~~riilhe 54 (98)
T d2gnoa1 39 DAFLLIQRLTRIILHE 54 (98)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhccc
Confidence 3799999999999964
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=7.91 E-value=1.6e+02 Score=17.70 Aligned_cols=17 Identities=18% Similarity=0.161 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 033667 13 MKVALFGVVQALVYLIL 29 (114)
Q Consensus 13 ~KvavFvlVQaLVYLIL 29 (114)
+=+++|++|+++...++
T Consensus 41 i~~~I~~~V~~~~~~~~ 57 (107)
T d3ehbb2 41 IITAVTIFVCLLLLICI 57 (107)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44567778887765554
No 8
>d1kifa2 d.16.1.3 (A:195-287) D-aminoacid oxidase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=7.76 E-value=30 Score=19.70 Aligned_cols=9 Identities=33% Similarity=0.826 Sum_probs=6.8
Q ss_pred CCCccCcch
Q 033667 46 SSSSFKPAR 54 (114)
Q Consensus 46 rS~SFrpaR 54 (114)
.-.||||+|
T Consensus 84 ~~~GlRP~r 92 (93)
T d1kifa2 84 EYTGFRPVR 92 (93)
T ss_dssp EEEEEEEEC
T ss_pred EEEeecCCC
Confidence 346899987
No 9
>d1vlga_ a.25.1.1 (A:) Non-hem ferritin {Thermotoga maritima [TaxId: 2336]}
Probab=6.28 E-value=2.8e+02 Score=16.99 Aligned_cols=66 Identities=14% Similarity=0.191 Sum_probs=40.4
Q ss_pred CccccchhhHHHHHHHHHHHHHHHHHHHHhcCCCceecCccccccCCCccC-cchhhh------HHHHHHHhhcCCCCCC
Q 033667 1 MMIEEWLNHDMLMKVALFGVVQALVYLILSKSSSIFSKNKKMIRSSSSSFK-PARSVS------IRRMLAVLQDMPSGGE 73 (114)
Q Consensus 1 m~~me~s~~d~L~KvavFvlVQaLVYLILs~SS~VFS~~~~~~~~rS~SFr-paRS~S------iRRmlA~LsD~P~GgE 73 (114)
||++...+.++|-+-.-.=+.-...||-++. .|. +.++ .+|= =-|..| +.+++..+.+. ||.
T Consensus 1 ~~~~s~~v~~~LN~qi~~El~as~~Yl~ma~---~~~-~~~l-----~g~a~~f~~~s~EE~~HA~~l~~yi~~r--gg~ 69 (164)
T d1vlga_ 1 MMVISEKVRKALNDQLNREIYSSYLYLSMAT---YFD-AEGF-----KGFAHWMKKQAQEELTHAMKFYEYIYER--GGR 69 (164)
T ss_dssp CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH-HHTC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHT--TCC
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHh-hcch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHc--CCC
Confidence 7888888999998887766666677887653 342 2222 1221 012222 55777777774 777
Q ss_pred CCCC
Q 033667 74 PSPS 77 (114)
Q Consensus 74 pSp~ 77 (114)
|.-.
T Consensus 70 ~~~~ 73 (164)
T d1vlga_ 70 VELE 73 (164)
T ss_dssp CCCC
T ss_pred CccC
Confidence 7543
No 10
>d2r9ga1 a.80.1.2 (A:238-423) Uncharacterized protein EfaeDRAFT_0938 {Enterococcus faecium [TaxId: 1352]}
Probab=6.10 E-value=1.4e+02 Score=20.55 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHhcCCC
Q 033667 18 FGVVQALVYLILSKSSS 34 (114)
Q Consensus 18 FvlVQaLVYLILs~SS~ 34 (114)
..|.||.+||-++.=||
T Consensus 78 i~LaqaviyLA~apKSn 94 (186)
T d2r9ga1 78 IPLADVVVDLCLSPKSN 94 (186)
T ss_dssp HHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHhCCCch
Confidence 45789999999986444
Done!