BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033668
(114 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255559488|ref|XP_002520764.1| small nuclear ribonucleoprotein sm d1, putative [Ricinus communis]
gi|223540149|gb|EEF41726.1| small nuclear ribonucleoprotein sm d1, putative [Ricinus communis]
Length = 114
Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/114 (98%), Positives = 113/114 (99%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+GRGRGRGRGRGRGRGR
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPLGRGRGRGRGRGRGRGR 114
>gi|296086730|emb|CBI32365.3| unnamed protein product [Vitis vinifera]
Length = 144
Score = 191 bits (484), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 95/98 (96%), Positives = 97/98 (98%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 31 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 90
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+
Sbjct: 91 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPM 128
>gi|225436986|ref|XP_002277211.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Vitis vinifera]
gi|225436988|ref|XP_002277231.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Vitis vinifera]
Length = 114
Score = 189 bits (481), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 95/98 (96%), Positives = 97/98 (98%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPM 98
>gi|225462054|ref|XP_002275736.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Vitis
vinifera]
Length = 114
Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 93/98 (94%), Positives = 97/98 (98%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV +DHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDS+NLETLLVEETPRVKPKKPTAGRP+
Sbjct: 61 RGNNIRYYILPDSINLETLLVEETPRVKPKKPTAGRPM 98
>gi|357440765|ref|XP_003590660.1| Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula]
gi|355479708|gb|AES60911.1| Small nuclear ribonucleoprotein Sm D1 [Medicago truncatula]
Length = 114
Score = 188 bits (477), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/98 (95%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEE PRVKPKKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 98
>gi|356499683|ref|XP_003518666.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Glycine max]
Length = 116
Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 93/98 (94%), Positives = 97/98 (98%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETP++KPKKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPKIKPKKPTAGKPL 98
>gi|359806624|ref|NP_001241019.1| uncharacterized protein LOC100819089 [Glycine max]
gi|255647733|gb|ACU24327.1| unknown [Glycine max]
Length = 115
Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 93/98 (94%), Positives = 97/98 (98%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETP++KPKKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPKIKPKKPTAGKPL 98
>gi|449464778|ref|XP_004150106.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis
sativus]
gi|449476727|ref|XP_004154817.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cucumis
sativus]
Length = 114
Score = 187 bits (476), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 93/98 (94%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLK VKLTLKGKNPV +DHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPL 98
>gi|255637946|gb|ACU19289.1| unknown [Glycine max]
Length = 116
Score = 187 bits (475), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 92/98 (93%), Positives = 97/98 (98%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYY+LPDSLNLETLLVEETP++KPKKPTAG+P+
Sbjct: 61 RGNNIRYYVLPDSLNLETLLVEETPKIKPKKPTAGKPL 98
>gi|224082616|ref|XP_002306766.1| predicted protein [Populus trichocarpa]
gi|222856215|gb|EEE93762.1| predicted protein [Populus trichocarpa]
Length = 112
Score = 187 bits (474), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 92/98 (93%), Positives = 97/98 (98%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLT+KGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLL+EETP+VKPKKPTAGRP+
Sbjct: 61 RGNNIRYYILPDSLNLETLLIEETPKVKPKKPTAGRPL 98
>gi|326498561|dbj|BAJ98708.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 181
Score = 187 bits (474), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 90/100 (90%), Positives = 96/100 (96%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT VHGTITGVDISMNTHLKTVKLT+KGKNPV LDH+SV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTMKGKNPVTLDHISV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGR 100
RGNNIRYYILPDSLNLETLLVE+TPRVK KKPT G+P+GR
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKSKKPTTGKPMGR 100
>gi|224066521|ref|XP_002302121.1| predicted protein [Populus trichocarpa]
gi|118482633|gb|ABK93236.1| unknown [Populus trichocarpa]
gi|118488779|gb|ABK96200.1| unknown [Populus trichocarpa]
gi|222843847|gb|EEE81394.1| predicted protein [Populus trichocarpa]
Length = 115
Score = 186 bits (472), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/98 (94%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLT+KGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR +
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRAL 98
>gi|242065592|ref|XP_002454085.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|195604664|gb|ACG24162.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|238011798|gb|ACR36934.1| unknown [Zea mays]
gi|241933916|gb|EES07061.1| hypothetical protein SORBIDRAFT_04g024330 [Sorghum bicolor]
gi|413922841|gb|AFW62773.1| Small nuclear ribonucleoprotein Sm D1 isoform 1 [Zea mays]
gi|413922842|gb|AFW62774.1| Small nuclear ribonucleoprotein Sm D1 isoform 2 [Zea mays]
Length = 114
Score = 186 bits (472), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/98 (93%), Positives = 97/98 (98%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPT+G+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTSGKPL 98
>gi|356504916|ref|XP_003521240.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 1
[Glycine max]
gi|356504918|ref|XP_003521241.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Glycine max]
Length = 114
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 91/98 (92%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEE P++KPKKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEEAPKIKPKKPTAGKPL 98
>gi|357149831|ref|XP_003575247.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Brachypodium distachyon]
Length = 114
Score = 186 bits (471), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/98 (93%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLL+EETPRVKPKKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLIEETPRVKPKKPTAGKPM 98
>gi|226507836|ref|NP_001151154.1| LOC100284787 [Zea mays]
gi|195644674|gb|ACG41805.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 116
Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/98 (93%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPT G+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTTGKPL 98
>gi|226496545|ref|NP_001148353.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|195618318|gb|ACG30989.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|414586802|tpg|DAA37373.1| TPA: small nuclear ribonucleoprotein Sm D1 [Zea mays]
Length = 115
Score = 185 bits (470), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 92/98 (93%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPT G+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTTGKPL 98
>gi|388509846|gb|AFK42989.1| unknown [Lotus japonicus]
Length = 116
Score = 185 bits (469), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 94/95 (98%), Positives = 94/95 (98%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
>gi|363814443|ref|NP_001242856.1| uncharacterized protein LOC100778485 [Glycine max]
gi|255640505|gb|ACU20538.1| unknown [Glycine max]
Length = 114
Score = 184 bits (468), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 90/98 (91%), Positives = 95/98 (96%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNG +VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGAVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEE P++KPKKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEEAPKIKPKKPTAGKPL 98
>gi|294463522|gb|ADE77290.1| unknown [Picea sitchensis]
Length = 114
Score = 184 bits (467), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 91/98 (92%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGK PV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKIPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGKPI 98
>gi|326511932|dbj|BAJ95947.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 114
Score = 184 bits (467), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 92/98 (93%), Positives = 95/98 (96%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT VHGTI GVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTIIGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGKPM 98
>gi|297848542|ref|XP_002892152.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297337994|gb|EFH68411.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 117
Score = 184 bits (466), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 91/96 (94%), Positives = 94/96 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVD+SMNTHLK VKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAGR
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGR 96
>gi|297602887|ref|NP_001053049.2| Os04g0470200 [Oryza sativa Japonica Group]
gi|38344744|emb|CAE03048.2| OSJNBa0089K21.2 [Oryza sativa Japonica Group]
gi|116310018|emb|CAH67043.1| OSIGBa0124N08.5 [Oryza sativa Indica Group]
gi|222629031|gb|EEE61163.1| hypothetical protein OsJ_15131 [Oryza sativa Japonica Group]
gi|255675540|dbj|BAF14963.2| Os04g0470200 [Oryza sativa Japonica Group]
Length = 114
Score = 184 bits (466), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 91/98 (92%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVE+TPRVK KKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGKPL 98
>gi|388508844|gb|AFK42488.1| unknown [Medicago truncatula]
Length = 115
Score = 183 bits (465), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 93/95 (97%), Positives = 93/95 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
RGNNIRYYILPDSLNLETLLVEE PRVKPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAG 95
>gi|15235510|ref|NP_192193.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|4263519|gb|AAD15345.1| small nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
gi|7269769|emb|CAB77769.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis
thaliana]
gi|21536940|gb|AAM61281.1| small nuclear riboprotein Sm-D1-like protein [Arabidopsis
thaliana]
gi|26450421|dbj|BAC42325.1| putative small nuclear riboprotein Sm-D1 [Arabidopsis thaliana]
gi|114050553|gb|ABI49426.1| At4g02840 [Arabidopsis thaliana]
gi|332656836|gb|AEE82236.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 116
Score = 182 bits (463), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 90/96 (93%), Positives = 94/96 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVD+SMNTHLK VKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 96
>gi|83272157|gb|ABC00745.1| putative small nuclear ribonucleoprotein D1 [Brassica napus]
Length = 118
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/98 (89%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKTVK+TLKGKNPV +DHLS+
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMTLKGKNPVTMDHLSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVE+TPR+KPKKP AG+PV
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRLKPKKPVAGKPV 98
>gi|125540070|gb|EAY86465.1| hypothetical protein OsI_07847 [Oryza sativa Indica Group]
Length = 114
Score = 182 bits (462), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/98 (92%), Positives = 95/98 (96%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVE+TPRVK KKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGKPL 98
>gi|388516873|gb|AFK46498.1| unknown [Lotus japonicus]
Length = 115
Score = 182 bits (461), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 91/98 (92%), Positives = 93/98 (94%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLK VKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RG NIRYYILPDSLNLETLLVEE PRVK KKPTAG+P+
Sbjct: 61 RGTNIRYYILPDSLNLETLLVEEAPRVKSKKPTAGKPL 98
>gi|115446977|ref|NP_001047268.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|46806276|dbj|BAD17484.1| putative small nuclear ribonucleoprotein D1 polypeptide 16kDa;
snRNP core protein D1; Sm-D autoantigen [Oryza sativa
Japonica Group]
gi|113536799|dbj|BAF09182.1| Os02g0586500 [Oryza sativa Japonica Group]
gi|125582674|gb|EAZ23605.1| hypothetical protein OsJ_07305 [Oryza sativa Japonica Group]
Length = 114
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/98 (91%), Positives = 94/98 (95%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT VHGTITGVDISMNTHLKTVKLTLKGKNPV DHLSV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTVHGTITGVDISMNTHLKTVKLTLKGKNPVTFDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVE+TPRVK KKPTAG+P+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGKPL 98
>gi|297814015|ref|XP_002874891.1| hypothetical protein ARALYDRAFT_490274 [Arabidopsis lyrata subsp.
lyrata]
gi|297320728|gb|EFH51150.1| hypothetical protein ARALYDRAFT_490274 [Arabidopsis lyrata subsp.
lyrata]
Length = 116
Score = 181 bits (459), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 90/95 (94%), Positives = 93/95 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVD+SMNTHLK VKLTLKGKNPV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAG 95
>gi|15231485|ref|NP_187416.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
gi|334185166|ref|NP_001189837.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
gi|6466942|gb|AAF13077.1|AC009176_4 putative small nuclear ribonucleoprotein (Sm-D1) [Arabidopsis
thaliana]
gi|17978995|gb|AAL47458.1| AT3g07590/MLP3_4 [Arabidopsis thaliana]
gi|21593161|gb|AAM65110.1| putative small nuclear ribonucleoprotein Sm-D1 [Arabidopsis
thaliana]
gi|21700847|gb|AAM70547.1| AT3g07590/MLP3_4 [Arabidopsis thaliana]
gi|332641049|gb|AEE74570.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
gi|332641050|gb|AEE74571.1| small nuclear ribonucleoprotein D1 [Arabidopsis thaliana]
Length = 114
Score = 181 bits (459), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 88/98 (89%), Positives = 95/98 (96%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKTVK++LKGKNPV LDHLS+
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG+ V
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGKAV 98
>gi|356499685|ref|XP_003518667.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Glycine max]
Length = 126
Score = 181 bits (458), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 93/108 (86%), Positives = 97/108 (89%), Gaps = 10/108 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTIT----------GVDISMNTHLKTVKLTLKGK 50
MKLVRFLMKLNNETVSIELKNGTIVHGTIT GVDISMNTHLKTVKLTLKGK
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITDKLTQWALDDGVDISMNTHLKTVKLTLKGK 60
Query: 51 NPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
NPV LDHLSVRGNNIRYYILPDSLNLETLLVEETP++KPKKPTAG+P+
Sbjct: 61 NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPKIKPKKPTAGKPL 108
>gi|116784296|gb|ABK23291.1| unknown [Picea sitchensis]
Length = 114
Score = 179 bits (455), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/98 (89%), Positives = 96/98 (97%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGK+PV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVNIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKSPVTLDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNLETLLVE+TP++KPK+PTAGR +
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPKIKPKRPTAGRAL 98
>gi|297829310|ref|XP_002882537.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297328377|gb|EFH58796.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 102
Score = 178 bits (451), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 86/96 (89%), Positives = 93/96 (96%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKTVK++LKGKNPV +DHLS+
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTIDHLSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGE 96
>gi|168013855|ref|XP_001759481.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689411|gb|EDQ75783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 177 bits (449), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 89/98 (90%), Positives = 94/98 (95%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLK+VKLTLKGK PV LDHLSV
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLKGKVPVALDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNL+TLLV++TPRVK KKP AG+PV
Sbjct: 61 RGNNIRYYILPDSLNLDTLLVDDTPRVKVKKPVAGKPV 98
>gi|168034120|ref|XP_001769561.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679103|gb|EDQ65554.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 177 bits (448), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 87/98 (88%), Positives = 94/98 (95%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTH+K+VKLTLKGK PV LDHLS+
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHMKSVKLTLKGKVPVALDHLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRYYILPDSLNL+TLLV++TPRVK KKP AG+PV
Sbjct: 61 RGNNIRYYILPDSLNLDTLLVDDTPRVKSKKPVAGKPV 98
>gi|302770463|ref|XP_002968650.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
gi|302816441|ref|XP_002989899.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300142210|gb|EFJ08912.1| hypothetical protein SELMODRAFT_235902 [Selaginella
moellendorffii]
gi|300163155|gb|EFJ29766.1| hypothetical protein SELMODRAFT_145785 [Selaginella
moellendorffii]
Length = 114
Score = 175 bits (444), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/97 (88%), Positives = 92/97 (94%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNGTIV+GTITGVDISMNTHLK VKL LKGKNPV +DHLS+
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVNGTITGVDISMNTHLKAVKLVLKGKNPVTMDHLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP 97
RGNNIRYYILPDSLNLETLLV++TPRVK KKP AG+P
Sbjct: 61 RGNNIRYYILPDSLNLETLLVDDTPRVKQKKPAAGKP 97
>gi|334186331|ref|NP_001190664.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
gi|332656837|gb|AEE82237.1| Small nuclear ribonucleoprotein family protein [Arabidopsis
thaliana]
Length = 126
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 90/106 (84%), Positives = 94/106 (88%), Gaps = 10/106 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTIT----------GVDISMNTHLKTVKLTLKGK 50
MKLVRFLMKLNNETVSIELKNGTIVHGTIT GVD+SMNTHLK VKLTLKGK
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60
Query: 51 NPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
NPV LDHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTAG+
Sbjct: 61 NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 106
>gi|296089996|emb|CBI39815.3| unnamed protein product [Vitis vinifera]
Length = 107
Score = 174 bits (442), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 86/91 (94%), Positives = 90/91 (98%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV +DHLSVRGNNIRY
Sbjct: 1 MKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTMDHLSVRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
YILPDS+NLETLLVEETPRVKPKKPTAGRP+
Sbjct: 61 YILPDSINLETLLVEETPRVKPKKPTAGRPM 91
>gi|414586803|tpg|DAA37374.1| TPA: hypothetical protein ZEAMMB73_218857 [Zea mays]
Length = 108
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSVRGNNIRY
Sbjct: 1 MKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
YILPDSLNLETLLVEETPRVKPKKPT G+P+
Sbjct: 61 YILPDSLNLETLLVEETPRVKPKKPTTGKPL 91
>gi|413918616|gb|AFW58548.1| hypothetical protein ZEAMMB73_336389 [Zea mays]
Length = 109
Score = 171 bits (434), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 85/91 (93%), Positives = 89/91 (97%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPV LDHLSVRGNNIRY
Sbjct: 1 MKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
YILPDSLNLETLLVEETPRVKPKKPT G+P+
Sbjct: 61 YILPDSLNLETLLVEETPRVKPKKPTTGKPL 91
>gi|440804582|gb|ELR25459.1| small nuclear ribonucleoprotein Sm D1, putative [Acanthamoeba
castellanii str. Neff]
Length = 125
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 84/111 (75%), Positives = 93/111 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL+NETV+IELKNGTIVHGTITGVDISMNTHLK VKLTLKGKNP+NLD LS+
Sbjct: 1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKLTLKGKNPINLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
RGNNIRYY+LPD+LNL+TLLV++TPR KP K V RG G GR
Sbjct: 61 RGNNIRYYLLPDTLNLDTLLVDDTPRPKPTKKVGEAGVPRGDVAAAGEGRA 111
>gi|168068658|ref|XP_001786159.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162662031|gb|EDQ49029.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 111
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 82/91 (90%), Positives = 88/91 (96%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLK+VKLTLKGK PV+LDHLS+RGNN
Sbjct: 1 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKSVKLTLKGKVPVSLDHLSIRGNN 60
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
IRYYILPDSLNL+TLLV++TPRVK KKP AG
Sbjct: 61 IRYYILPDSLNLDTLLVDDTPRVKAKKPVAG 91
>gi|66816135|ref|XP_642077.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|60470206|gb|EAL68186.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 131
Score = 155 bits (391), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/94 (80%), Positives = 88/94 (93%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL+NETV+IELKNGTIV G++ GVD+SMNTHLKTVKLTLKGKNPVNLD LS+
Sbjct: 1 MKLVRFLMKLHNETVTIELKNGTIVQGSVAGVDVSMNTHLKTVKLTLKGKNPVNLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILP+SLNL TLLV++TP+VK KK T+
Sbjct: 61 RGNNIRYFILPESLNLGTLLVDDTPKVKAKKTTS 94
>gi|303277487|ref|XP_003058037.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460694|gb|EEH57988.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 116
Score = 153 bits (386), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 85/90 (94%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFL KL++ET +IELKNGT+VHGTI GVDISMNTHLK VK+TLKGKNPV++DHLSV
Sbjct: 1 MKLVRFLQKLSHETCTIELKNGTVVHGTIMGVDISMNTHLKNVKMTLKGKNPVSMDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGNNIRYYILPDSLNL+TLLV++TP++K K
Sbjct: 61 RGNNIRYYILPDSLNLDTLLVDDTPKIKSK 90
>gi|325188130|emb|CCA22672.1| small nuclear ribonucleoprotein Sm D1 putative [Albugo laibachii
Nc14]
Length = 114
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 77/97 (79%), Positives = 85/97 (87%), Gaps = 3/97 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL+NETV+IELKNGTIVHGTITGVDISMNTHLK VK+T KGKNP LD LS+
Sbjct: 1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGVDISMNTHLKAVKMTAKGKNPQTLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP 97
RGNNIRYYILPDSLNL+ LL+++TPR K K AG P
Sbjct: 61 RGNNIRYYILPDSLNLDVLLIDDTPREKVK---AGLP 94
>gi|218195022|gb|EEC77449.1| hypothetical protein OsI_16257 [Oryza sativa Indica Group]
Length = 170
Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/108 (74%), Positives = 87/108 (80%), Gaps = 2/108 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKT-VKLTLKGKNPVNLDHLS 59
MKLVRFLMKLNNETV+IELKNGT+VHGTITG M+ ++ + L GKNPV LDHLS
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGGQAVMSWNVSILIHQPLAGKNPVTLDHLS 60
Query: 60 VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRG 107
VRGNNIRYYILPDSLNLETLLVE+TPRVK KKPTAGR R R RG
Sbjct: 61 VRGNNIRYYILPDSLNLETLLVEDTPRVKAKKPTAGRAAWAVR-RERG 107
>gi|393212701|gb|EJC98200.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 119
Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/105 (68%), Positives = 90/105 (85%), Gaps = 2/105 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNG+IVHGTITGVD+ MNTHLKTVK+T++ ++P +LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTMRNRDPQSLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
RGNNIRY++LPD+L L+TLLV++ P+ K +K R GRGRGR
Sbjct: 61 RGNNIRYFVLPDALPLDTLLVDDAPKPKNRKKEEVR--GRGRGRA 103
>gi|301090235|ref|XP_002895342.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
gi|262100456|gb|EEY58508.1| small nuclear ribonucleoprotein Sm D1 [Phytophthora infestans
T30-4]
Length = 105
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/92 (79%), Positives = 83/92 (90%), Gaps = 3/92 (3%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKL+NETV+IELKNGT+VHGTITGVDISMNTHLK VK+T+KGKNPVNLD LS+RGNNIRY
Sbjct: 1 MKLSNETVTIELKNGTLVHGTITGVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKKPTAGRPVG 99
YILPDSLNL+TLL+++TPR K K AG P G
Sbjct: 61 YILPDSLNLDTLLIDDTPREKVK---AGAPAG 89
>gi|255075581|ref|XP_002501465.1| predicted protein [Micromonas sp. RCC299]
gi|226516729|gb|ACO62723.1| predicted protein [Micromonas sp. RCC299]
Length = 117
Score = 146 bits (368), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 68/87 (78%), Positives = 83/87 (95%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFL KL++E+V+IELKNGT++ GTI GVD+SMNTHLK VK+TLKGKNPV++DHLSV
Sbjct: 1 MKLVRFLQKLSHESVTIELKNGTVIAGTIMGVDVSMNTHLKNVKMTLKGKNPVSMDHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRV 87
RGNNIRYYILPDSLNL+TLLV++TP++
Sbjct: 61 RGNNIRYYILPDSLNLDTLLVDDTPKI 87
>gi|330796086|ref|XP_003286100.1| hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum]
gi|325083919|gb|EGC37359.1| hypothetical protein DICPUDRAFT_77015 [Dictyostelium purpureum]
Length = 126
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/84 (86%), Positives = 80/84 (95%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL+NETV+IELKNGTIV GTI GVD+SMNTHLKTVKLTLKGKNPVNLD LS+
Sbjct: 1 MKLVRFLMKLHNETVTIELKNGTIVQGTIAGVDVSMNTHLKTVKLTLKGKNPVNLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEET 84
RGNNIRYYILP+SLNL TLLV++T
Sbjct: 61 RGNNIRYYILPESLNLGTLLVDDT 84
>gi|348673532|gb|EGZ13351.1| hypothetical protein PHYSODRAFT_302978 [Phytophthora sojae]
Length = 434
Score = 145 bits (366), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 85/118 (72%), Gaps = 30/118 (25%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITG----------------------------- 31
MKLVRFLMKL+NETV+IELKNGTIVHGTITG
Sbjct: 1 MKLVRFLMKLSNETVTIELKNGTIVHGTITGATALYRCFRSALASVWTDLNVVPVYLLPT 60
Query: 32 -VDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVK 88
VDISMNTHLK VK+T+KGKNPVNLD LS+RGNNIRYYILPDSLNL+TLL+++TPR K
Sbjct: 61 GVDISMNTHLKAVKMTVKGKNPVNLDSLSIRGNNIRYYILPDSLNLDTLLIDDTPREK 118
>gi|159486837|ref|XP_001701443.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
gi|158271625|gb|EDO97440.1| small nuclear ribonucleoprotein Sm D1 [Chlamydomonas reinhardtii]
Length = 114
Score = 144 bits (363), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 70/92 (76%), Positives = 81/92 (88%), Gaps = 1/92 (1%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKL NETV IELKNGT++ GTI GVDI+MNTHLK VKLT +GKNPV++DHLSVRGNN
Sbjct: 1 RFLMKLANETVQIELKNGTVIQGTIAGVDIAMNTHLKAVKLTARGKNPVSMDHLSVRGNN 60
Query: 65 IRYYILPDSLNLETLLVE-ETPRVKPKKPTAG 95
IRYYILPDSLNL+TLLV+ + P+ +P KPT G
Sbjct: 61 IRYYILPDSLNLDTLLVDIDKPKQRPTKPTRG 92
>gi|291394184|ref|XP_002713641.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like [Oryctolagus cuniculus]
Length = 236
Score = 144 bits (363), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 118 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 177
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPDSL L+TLLV+ P+VK KK
Sbjct: 178 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 208
>gi|432105433|gb|ELK31648.1| Small nuclear ribonucleoprotein Sm D1 [Myotis davidii]
Length = 221
Score = 144 bits (362), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 103 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 162
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPDSL L+TLLV+ P+VK KK
Sbjct: 163 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 193
>gi|157105264|ref|XP_001648790.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|157118312|ref|XP_001653165.1| small nuclear ribonucleoprotein sm d1 [Aedes aegypti]
gi|108880134|gb|EAT44359.1| AAEL004263-PA [Aedes aegypti]
gi|108883288|gb|EAT47513.1| AAEL001382-PA [Aedes aegypti]
Length = 126
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 68/95 (71%), Positives = 83/95 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD++MNTHLK VK+T+K ++PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
RGNNIRYYILPDSL LETLL+++ P+ + KK A
Sbjct: 61 RGNNIRYYILPDSLPLETLLIDDAPKTRAKKREAN 95
>gi|47028291|gb|AAT09078.1| small nuclear ribonucleoprotein Sm-D1 [Bigelowiella natans]
Length = 120
Score = 143 bits (361), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 71/97 (73%), Positives = 84/97 (86%), Gaps = 4/97 (4%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLV+FLM+LNNETV++ELKNGT+V GTI+GVD+SMNTHLK VK+TLKGKNPV+LD LS+
Sbjct: 1 MKLVKFLMRLNNETVTVELKNGTVVQGTISGVDMSMNTHLKIVKMTLKGKNPVHLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP 97
RGNNIRY+ILPDSLNL+ LLVEE KK T+ R
Sbjct: 61 RGNNIRYFILPDSLNLDALLVEEV----KKKTTSTRS 93
>gi|170064026|ref|XP_001867355.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
gi|167881462|gb|EDS44845.1| small nuclear ribonucleoprotein Sm D1 [Culex quinquefasciatus]
Length = 126
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 82/91 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD++MNTHLK VK+T+K ++PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVQLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRYYILPDSL LETLL+++ P+ + KK
Sbjct: 61 RGNNIRYYILPDSLPLETLLIDDAPKTRAKK 91
>gi|158285999|ref|XP_308555.4| AGAP007246-PA [Anopheles gambiae str. PEST]
gi|157020260|gb|EAA04383.5| AGAP007246-PA [Anopheles gambiae str. PEST]
Length = 126
Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/95 (71%), Positives = 83/95 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD++MNTHLK VK+T+K ++PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNRDPVTLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
RGNNIRYYILPDSL LETLL+++ P+ + KK A
Sbjct: 61 RGNNIRYYILPDSLPLETLLIDDAPKTRAKKREAN 95
>gi|323455004|gb|EGB10873.1| hypothetical protein AURANDRAFT_22657 [Aureococcus
anophagefferens]
Length = 114
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/98 (72%), Positives = 81/98 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT+V GTI+GVDISMNT LK LT KGKN V D LSV
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVVQGTISGVDISMNTFLKNASLTPKGKNGVKYDTLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RG+N+RYYILPDSLNL+TLL+++TP+ K K A R V
Sbjct: 61 RGSNVRYYILPDSLNLDTLLIDDTPKQKVKAAGAARSV 98
>gi|402902787|ref|XP_003914277.1| PREDICTED: uncharacterized protein LOC101001281 [Papio anubis]
Length = 266
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 109 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 168
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPDSL L+TLLV+ P+VK KK
Sbjct: 169 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKK 199
>gi|145345472|ref|XP_001417233.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577460|gb|ABO95526.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 114
Score = 142 bits (358), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 68/86 (79%), Positives = 78/86 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFL KL+NE+V+IELKNGT HGTI GVD+SMNTHLK VKLTLKGKNP ++HLSV
Sbjct: 1 MKLVRFLQKLSNESVTIELKNGTTAHGTIMGVDVSMNTHLKQVKLTLKGKNPTAVEHLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RGN IRYYILPDSLNL+TLLV++TP+
Sbjct: 61 RGNTIRYYILPDSLNLDTLLVDDTPK 86
>gi|298709372|emb|CBJ31306.1| Small nuclear ribonucleoprotein-associated protein D1 [Ectocarpus
siliculosus]
Length = 107
Score = 142 bits (357), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 70/104 (67%), Positives = 83/104 (79%), Gaps = 3/104 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK+NNETV++ELKNGT VHGT+ VD+SMNTHLK VK+T KGKNP D LS+
Sbjct: 1 MKLVRFLMKMNNETVTVELKNGTTVHGTVASVDVSMNTHLKNVKVTPKGKNPTTYDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
RGNNIR YILPD+LNL+ LL+++ P+ KP K G RGRGR
Sbjct: 61 RGNNIRCYILPDNLNLDQLLIDDAPKQKPGKVKDG---ARGRGR 101
>gi|355721054|gb|AES07137.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Mustela
putorius furo]
Length = 139
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 21 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 80
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 81 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 114
>gi|148691046|gb|EDL22993.1| mCG14669, isoform CRA_b [Mus musculus]
Length = 134
Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 16 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 75
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 76 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 109
>gi|389747560|gb|EIM88738.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 123
Score = 141 bits (356), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 82/91 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNG+IVHGTITGVD+ MNTHLKTVK+T + ++P +LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDPSSLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY++LPDSL L+TLLV++ P+ K KK
Sbjct: 61 RGNNIRYFVLPDSLPLDTLLVDDAPKPKSKK 91
>gi|242022404|ref|XP_002431630.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
gi|212516938|gb|EEB18892.1| small nuclear ribonucleoprotein sm D1, putative [Pediculus
humanus corporis]
Length = 122
Score = 141 bits (355), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 83/94 (88%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD++MNTHLK VK+T+K K PV L+ L++
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTIKNKEPVMLETLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL LETLL+++TP+ K KK A
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKAKKKEA 94
>gi|401400718|ref|XP_003880841.1| sm protein, related [Neospora caninum Liverpool]
gi|325115253|emb|CBZ50808.1| sm protein, related [Neospora caninum Liverpool]
Length = 121
Score = 141 bits (355), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 67/98 (68%), Positives = 85/98 (86%), Gaps = 1/98 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLM+L NET+ IELKNGT++HGT+ GVDISMNTHLK VK+TLK NP +L+HL++
Sbjct: 1 MKLVRFLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTLKHGNPTSLEHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRY+ILPDSL L+TLL+++TP +P + AGRP+
Sbjct: 61 RGNNIRYFILPDSLPLDTLLIDDTPLQRPAR-EAGRPI 97
>gi|237839011|ref|XP_002368803.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211966467|gb|EEB01663.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221481300|gb|EEE19694.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221502024|gb|EEE27770.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 121
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 66/98 (67%), Positives = 85/98 (86%), Gaps = 1/98 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLM+L NET+ IELKNGT++HGT+ GVDISMNTHLK VK+T+K NP +L+HL++
Sbjct: 1 MKLVRFLMRLANETLVIELKNGTVIHGTVVGVDISMNTHLKNVKMTMKQGNPTSLEHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPV 98
RGNNIRY+ILPDSL L+TLL+++TP +P + AGRP+
Sbjct: 61 RGNNIRYFILPDSLPLDTLLIDDTPLQRPAR-EAGRPI 97
>gi|443713219|gb|ELU06184.1| hypothetical protein CAPTEDRAFT_162674 [Capitella teleta]
Length = 126
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 65/88 (73%), Positives = 83/88 (94%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT+VHGTITGVD+SMNTHLK+VK+T+K ++P+ LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTMVHGTITGVDVSMNTHLKSVKMTIKNRDPIQLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVK 88
RGNNIRYY+LPDSL L+TLL+++TP+ K
Sbjct: 61 RGNNIRYYLLPDSLPLDTLLIDDTPKSK 88
>gi|60832252|gb|AAX37003.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
Length = 120
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>gi|5902102|ref|NP_008869.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
gi|6678055|ref|NP_033252.1| small nuclear ribonucleoprotein Sm D1 [Mus musculus]
gi|78050059|ref|NP_001030237.1| small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|157818069|ref|NP_001099633.1| small nuclear ribonucleoprotein Sm D1 [Rattus norvegicus]
gi|350535747|ref|NP_001232444.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|386780612|ref|NP_001247758.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|57089749|ref|XP_537302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Canis lupus
familiaris]
gi|114672526|ref|XP_512054.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan
troglodytes]
gi|126321779|ref|XP_001363297.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Monodelphis domestica]
gi|296222369|ref|XP_002757161.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Callithrix
jacchus]
gi|297702359|ref|XP_002828147.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pongo abelii]
gi|301785950|ref|XP_002928390.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Ailuropoda
melanoleuca]
gi|311259030|ref|XP_003127902.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Sus
scrofa]
gi|327282141|ref|XP_003225802.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Anolis
carolinensis]
gi|348576770|ref|XP_003474159.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cavia
porcellus]
gi|354481732|ref|XP_003503055.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Cricetulus
griseus]
gi|395511627|ref|XP_003760058.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Sarcophilus
harrisii]
gi|395823105|ref|XP_003784837.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Otolemur
garnettii]
gi|397489347|ref|XP_003815691.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Pan paniscus]
gi|403265201|ref|XP_003924835.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 1
[Saimiri boliviensis boliviensis]
gi|403265203|ref|XP_003924836.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 isoform 2
[Saimiri boliviensis boliviensis]
gi|410977436|ref|XP_003995111.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Felis catus]
gi|426253705|ref|XP_004020533.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Ovis aries]
gi|51338665|sp|P62314.1|SMD1_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|60413325|sp|P62315.1|SMD1_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=Sm-D autoantigen; AltName: Full=snRNP
core protein D1
gi|75076018|sp|Q4R5F6.1|SMD1_MACFA RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|109894869|sp|Q3ZC10.1|SMD1_BOVIN RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|6980598|pdb|1B34|A Chain A, Crystal Structure Of The D1d2 Sub-Complex From The Human
Snrnp Core Domain
gi|225734042|pdb|3CW1|B Chain B, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734051|pdb|3CW1|M Chain M, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734060|pdb|3CW1|N Chain N, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734069|pdb|3CW1|O Chain O, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583602|pdb|3PGW|X Chain X, Crystal Structure Of Human U1 Snrnp
gi|315583611|pdb|3PGW|U Chain U, Crystal Structure Of Human U1 Snrnp
gi|332639434|pdb|2Y9A|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639441|pdb|2Y9A|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639448|pdb|2Y9A|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639458|pdb|2Y9B|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639465|pdb|2Y9B|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639472|pdb|2Y9B|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639482|pdb|2Y9C|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639489|pdb|2Y9C|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639496|pdb|2Y9C|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639506|pdb|2Y9D|B Chain B, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639513|pdb|2Y9D|I Chain I, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639520|pdb|2Y9D|P Chain P, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781210|pdb|3S6N|A Chain A, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302196|pdb|4F7U|A Chain A, Macromolecular Machine 6
gi|444302198|pdb|4F7U|C Chain C, Macromolecular Machine 6
gi|453055422|pdb|1VU2|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055430|pdb|1VU2|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055438|pdb|1VU2|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055446|pdb|1VU2|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055454|pdb|1VU2|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055462|pdb|1VU2|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453055474|pdb|1VU2|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|453055478|pdb|1VU3|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453055486|pdb|1VU3|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453055494|pdb|1VU3|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453055502|pdb|1VU3|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453055510|pdb|1VU3|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453055518|pdb|1VU3|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056010|pdb|4F77|I Chain I, The 8s Snrnp Assembly Intermediate
gi|453056018|pdb|4F77|A Chain A, The 8s Snrnp Assembly Intermediate
gi|453056026|pdb|4F77|Q Chain Q, The 8s Snrnp Assembly Intermediate
gi|453056034|pdb|4F77|Y Chain Y, The 8s Snrnp Assembly Intermediate
gi|453056042|pdb|4F77|GG Chain g, The 8s Snrnp Assembly Intermediate
gi|453056050|pdb|4F77|OO Chain o, The 8s Snrnp Assembly Intermediate
gi|453056062|pdb|4F77|WW Chain w, The 8s Snrnp Assembly Intermediate
gi|338265|gb|AAA36620.1| small nuclear riboprotein Sm-D [Homo sapiens]
gi|705366|gb|AAA85339.1| small nuclear ribonucleoprotein [Homo sapiens]
gi|1256741|gb|AAA96493.1| Sm-D autoantigen [Mus musculus]
gi|12804599|gb|AAH01721.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|12838127|dbj|BAB24092.1| unnamed protein product [Mus musculus]
gi|12841366|dbj|BAB25178.1| unnamed protein product [Mus musculus]
gi|12847588|dbj|BAB27628.1| unnamed protein product [Mus musculus]
gi|12850214|dbj|BAB28635.1| unnamed protein product [Mus musculus]
gi|19354162|gb|AAH24875.1| Small nuclear ribonucleoprotein D1 [Mus musculus]
gi|48734707|gb|AAH72427.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|49457472|emb|CAG47035.1| SNRPD1 [Homo sapiens]
gi|67970653|dbj|BAE01669.1| unnamed protein product [Macaca fascicularis]
gi|73586929|gb|AAI02988.1| Small nuclear ribonucleoprotein D1 polypeptide 16kDa [Bos taurus]
gi|74144965|dbj|BAE22192.1| unnamed protein product [Mus musculus]
gi|74193588|dbj|BAE22759.1| unnamed protein product [Mus musculus]
gi|119621535|gb|EAX01130.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|149031722|gb|EDL86672.1| small nuclear ribonucleoprotein D1 (predicted) [Rattus
norvegicus]
gi|187469818|gb|AAI67095.1| Small nuclear ribonucleoprotein D1 [Rattus norvegicus]
gi|197127450|gb|ACH43948.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197127451|gb|ACH43949.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197129948|gb|ACH46446.1| putative small nuclear ribonucleoprotein D1 [Taeniopygia guttata]
gi|197692155|dbj|BAG70041.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|197692401|dbj|BAG70164.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Homo
sapiens]
gi|208967432|dbj|BAG73730.1| small nuclear ribonucleoprotein D1 polypeptide [synthetic
construct]
gi|296473819|tpg|DAA15934.1| TPA: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|344251470|gb|EGW07574.1| Small nuclear ribonucleoprotein Sm D1 [Cricetulus griseus]
gi|380815842|gb|AFE79795.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|383420995|gb|AFH33711.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|384948966|gb|AFI38088.1| small nuclear ribonucleoprotein Sm D1 [Macaca mulatta]
gi|410215894|gb|JAA05166.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410253718|gb|JAA14826.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410297902|gb|JAA27551.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
gi|410328399|gb|JAA33146.1| small nuclear ribonucleoprotein D1 polypeptide 16kDa [Pan
troglodytes]
Length = 119
Score = 140 bits (354), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 82/94 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>gi|340381476|ref|XP_003389247.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Amphimedon queenslandica]
Length = 119
Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 69/91 (75%), Positives = 83/91 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLN+ETV+IELKNGT+VHGT+ GVD+SMNTHLK+VKLTLKG+ P+ LD LS+
Sbjct: 1 MKLVRFLMKLNHETVTIELKNGTVVHGTVAGVDMSMNTHLKSVKLTLKGREPLALDTLSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRYYILP+S+ L+TLLV++T R K KK
Sbjct: 61 RGNNIRYYILPESVPLDTLLVDDTTRRKTKK 91
>gi|71018117|ref|XP_759289.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
gi|46099139|gb|EAK84372.1| hypothetical protein UM03142.1 [Ustilago maydis 521]
Length = 192
Score = 140 bits (353), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 85/101 (84%), Gaps = 3/101 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNE+V+IELKNGT+VHGT+TGVDI MNTHLKTVK+T++G+ V LD LS+
Sbjct: 68 MKLVRFLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMTVRGRPAVTLDTLSI 127
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRG 101
RGNNIRY+ILPD+L L+ LLV++ P+ K K+ PV RG
Sbjct: 128 RGNNIRYWILPDALPLDMLLVDDAPKPKGKR---KDPVARG 165
>gi|198464926|ref|XP_001353417.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
gi|198149939|gb|EAL30924.2| GA10544 [Drosophila pseudoobscura pseudoobscura]
Length = 125
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 85/91 (93%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV+L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPDSL LETLL+++TP+ K KK
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|291401386|ref|XP_002717263.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like [Oryctolagus cuniculus]
Length = 144
Score = 140 bits (352), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 81/94 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 26 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 85
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNI Y+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 86 RGNNICYFILPDSLPLDTLLVDVEPKVKSKKREA 119
>gi|17864386|ref|NP_524774.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|194747611|ref|XP_001956245.1| GF25112 [Drosophila ananassae]
gi|195327205|ref|XP_002030312.1| GM24635 [Drosophila sechellia]
gi|195493908|ref|XP_002094615.1| GE20102 [Drosophila yakuba]
gi|195589894|ref|XP_002084684.1| GD12704 [Drosophila simulans]
gi|33112453|sp|Q9VU02.1|SMD1_DROME RecName: Full=Probable small nuclear ribonucleoprotein Sm D1;
Short=Sm-D1; AltName: Full=snRNP core protein D1
gi|7294552|gb|AAF49893.1| small ribonucleoprotein particle protein SmD1 [Drosophila
melanogaster]
gi|189181777|gb|ACD81665.1| FI02845p [Drosophila melanogaster]
gi|190623527|gb|EDV39051.1| GF25112 [Drosophila ananassae]
gi|194119255|gb|EDW41298.1| GM24635 [Drosophila sechellia]
gi|194180716|gb|EDW94327.1| GE20102 [Drosophila yakuba]
gi|194196693|gb|EDX10269.1| GD12704 [Drosophila simulans]
Length = 124
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 85/91 (93%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV+L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPDSL LETLL+++TP+ K KK
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|194870009|ref|XP_001972567.1| GG13810 [Drosophila erecta]
gi|190654350|gb|EDV51593.1| GG13810 [Drosophila erecta]
Length = 124
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 85/91 (93%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV+L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPDSL LETLL+++TP+ K KK
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|428180768|gb|EKX49634.1| hypothetical protein GUITHDRAFT_151418 [Guillardia theta
CCMP2712]
Length = 117
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 66/94 (70%), Positives = 83/94 (88%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNG++VHGTI G+D++MNTHLK VKLT++ K PV L+ LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSVVHGTIVGIDMAMNTHLKAVKLTMRNKTPVPLEQLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RG+NIRYY+LPD+LNL+TLLVE+ P+ K K +A
Sbjct: 61 RGSNIRYYLLPDNLNLDTLLVEDAPKHKMGKASA 94
>gi|405973300|gb|EKC38022.1| Small nuclear ribonucleoprotein Sm D1 [Crassostrea gigas]
Length = 688
Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats.
Identities = 63/87 (72%), Positives = 78/87 (89%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKL++ETV+IELKNGT VHGT+TGVD+ MNTHLK VK+T+K K+PV +D LS+RGNN
Sbjct: 572 RFLMKLSHETVTIELKNGTQVHGTVTGVDVCMNTHLKAVKMTIKNKDPVQVDTLSIRGNN 631
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKK 91
IRYYILPDSL L+TLL+++TP+ K KK
Sbjct: 632 IRYYILPDSLPLDTLLIDDTPKAKQKK 658
>gi|328873443|gb|EGG21810.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 185
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/80 (83%), Positives = 77/80 (96%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
+RFLMKL+NETV+IELKNGTI+HGTI GVD+SMNTHLKTVKLTLKGKNP+NLD LS+RGN
Sbjct: 37 LRFLMKLHNETVTIELKNGTIIHGTIVGVDVSMNTHLKTVKLTLKGKNPINLDTLSIRGN 96
Query: 64 NIRYYILPDSLNLETLLVEE 83
NIRYYILP+SLNL TLLV++
Sbjct: 97 NIRYYILPESLNLGTLLVDD 116
>gi|66509459|ref|XP_624938.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Apis mellifera]
gi|340728072|ref|XP_003402355.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Bombus terrestris]
gi|350424394|ref|XP_003493781.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Bombus impatiens]
gi|383861733|ref|XP_003706339.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Megachile rotundata]
Length = 123
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 80/85 (94%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD++MNTHLKTVK+T+K ++PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKTVKMTIKNRDPVQLDTLSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRYYILPDSL LETLL+++TP
Sbjct: 61 RGNNIRYYILPDSLPLETLLIDDTP 85
>gi|156538102|ref|XP_001608160.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Nasonia vitripennis]
Length = 123
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 80/85 (94%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD++MNTHLKTVK+T+K ++PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKTVKMTIKNRDPVQLDTLSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRYYILPDSL LETLL+++TP
Sbjct: 61 RGNNIRYYILPDSLPLETLLIDDTP 85
>gi|422295210|gb|EKU22509.1| small nuclear ribonucleoprotein D1, partial [Nannochloropsis
gaditana CCMP526]
Length = 108
Score = 139 bits (351), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/90 (74%), Positives = 81/90 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGT + GTI+GVD+SMNT+LK VK+TLKGKNPV+ + LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTTIQGTISGVDVSMNTYLKNVKVTLKGKNPVSYESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGNNIRYYILPD+LNL+ LLV++ P+ K K
Sbjct: 61 RGNNIRYYILPDALNLDALLVDDGPKNKLK 90
>gi|32959908|emb|CAE11897.1| small nuclear ribonucleoprotein Sm D1 [Homo sapiens]
Length = 119
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 70/94 (74%), Positives = 81/94 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVIIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>gi|91093211|ref|XP_969739.1| PREDICTED: similar to small nuclear ribonucleoprotein at 69D
CG10753-PA [Tribolium castaneum]
gi|270016480|gb|EFA12926.1| hypothetical protein TcasGA2_TC010472 [Tribolium castaneum]
Length = 121
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 80/85 (94%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV++ELKNGT VHGTITGVD++MNTHLK VK+T+K +NPVNLD L+V
Sbjct: 1 MKLVRFLMKLSHETVTMELKNGTQVHGTITGVDVAMNTHLKAVKVTVKNRNPVNLDTLTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRYYILPDSL LETLL+++TP
Sbjct: 61 RGNNIRYYILPDSLPLETLLIDDTP 85
>gi|27545253|ref|NP_775359.1| small nuclear ribonucleoprotein Sm D1 [Danio rerio]
gi|21105451|gb|AAM34669.1|AF506225_1 small nuclear ribonucleoprotein D1 [Danio rerio]
gi|47938075|gb|AAH71543.1| Snrpd1 protein [Danio rerio]
Length = 119
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 81/94 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + P L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREA 94
>gi|52345462|ref|NP_001004780.1| small nuclear ribonucleoprotein Sm D1 [Xenopus (Silurana)
tropicalis]
gi|148227202|ref|NP_001085322.1| small nuclear ribonucleoprotein Sm D1 [Xenopus laevis]
gi|49250837|gb|AAH74514.1| MGC69276 protein [Xenopus (Silurana) tropicalis]
gi|49255946|gb|AAH71069.1| MGC78968 protein [Xenopus laevis]
gi|76779906|gb|AAI06262.1| MGC78968 protein [Xenopus laevis]
gi|118835457|gb|AAI28954.1| MGC78968 protein [Xenopus laevis]
Length = 119
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 82/94 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV++ELKNGT VHGTITGVD+SMNTHLK VK+T+K + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTVKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>gi|409048487|gb|EKM57965.1| hypothetical protein PHACADRAFT_251891 [Phanerochaete carnosa
HHB-10118-sp]
Length = 122
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 82/91 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNG+IVHGTITGVD+ MNTHLKTVK+T + ++P +LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVKMTARNRDPTSLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY++LPD+L L+TLLV++ P+ K +K
Sbjct: 61 RGNNIRYFVLPDALPLDTLLVDDAPKPKNRK 91
>gi|443897891|dbj|GAC75230.1| small nuclear ribonucleoprotein SMD1 and related snRNPs [Pseudozyma
antarctica T-34]
Length = 124
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 69/101 (68%), Positives = 84/101 (83%), Gaps = 3/101 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNE+VSIELKNGT+VHGT+TGVDI MNTHLKTVK+T++G+ V LD LS+
Sbjct: 1 MKLVRFLMKLNNESVSIELKNGTVVHGTVTGVDIQMNTHLKTVKMTVRGRPAVTLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRG 101
RGNNIRY+ILPD+L L+ LLV++ P+ K K+ P RG
Sbjct: 61 RGNNIRYWILPDALPLDMLLVDDAPKPKGKR---KDPAARG 98
>gi|196003304|ref|XP_002111519.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
gi|190585418|gb|EDV25486.1| hypothetical protein TRIADDRAFT_55621 [Trichoplax adhaerens]
Length = 130
Score = 139 bits (350), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 83/91 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK+N+ETV+IELKNGT+VHGT+ GVD+SMNTHLK+VK+T+K + PV LD L++
Sbjct: 1 MKLVRFLMKINHETVTIELKNGTVVHGTVWGVDMSMNTHLKSVKMTVKNREPVTLDTLAI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPD+L L+ LLV+++P++K KK
Sbjct: 61 RGNNIRYFILPDNLALDQLLVDDSPKMKAKK 91
>gi|307111075|gb|EFN59310.1| hypothetical protein CHLNCDRAFT_29459 [Chlorella variabilis]
Length = 115
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 66/93 (70%), Positives = 82/93 (88%), Gaps = 1/93 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
+KLVRFLMKL NE V IELKNGT+V+GTITGVD++MNTHLKTVKL KG+NP+ + +S+
Sbjct: 2 VKLVRFLMKLANEKVQIELKNGTVVYGTITGVDVAMNTHLKTVKLVPKGQNPITVAQMSI 61
Query: 61 RGNNIRYYILPDSLNLETLLVE-ETPRVKPKKP 92
RGNNIRYYILPDSLNL+TLLV+ + P+ +PK+P
Sbjct: 62 RGNNIRYYILPDSLNLDTLLVDLDQPKTRPKRP 94
>gi|348513171|ref|XP_003444116.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Oreochromis niloticus]
gi|432883312|ref|XP_004074261.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Oryzias
latipes]
Length = 119
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 81/94 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + P L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPTQLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P++K KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDIEPKIKSKKREA 94
>gi|156336212|ref|XP_001619663.1| hypothetical protein NEMVEDRAFT_v1g223956 [Nematostella vectensis]
gi|156203311|gb|EDO27563.1| predicted protein [Nematostella vectensis]
Length = 128
Score = 138 bits (348), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 89/102 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT++HGTITGVD+SMNTHLKTVK+T+K + P+ L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGR 102
RGNNIRY+ILP+SL L+TLLV++TP+ K KK AG +G+
Sbjct: 61 RGNNIRYFILPESLPLDTLLVDDTPKAKAKKKEAGMQNSKGQ 102
>gi|332225775|ref|XP_003262059.1| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Nomascus
leucogenys]
Length = 119
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 81/94 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTI GVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTILGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>gi|198437112|ref|XP_002129287.1| PREDICTED: similar to AGAP007246-PA isoform 1 [Ciona
intestinalis]
gi|198437114|ref|XP_002129303.1| PREDICTED: similar to AGAP007246-PA isoform 2 [Ciona
intestinalis]
Length = 121
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 82/90 (91%), Gaps = 1/90 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL RFLMKL++ETV+IELKNGT VHGTITGVDI MNTHLK+VK+T+K ++PVNLD LS+
Sbjct: 1 MKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMNTHLKSVKMTVKNRDPVNLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGNNIRYYILPDSL L+TLLV+E P+ +PK
Sbjct: 61 RGNNIRYYILPDSLPLDTLLVDEGPK-QPK 89
>gi|221125651|ref|XP_002163302.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Hydra
magnipapillata]
Length = 128
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 82/90 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV++ELKNGT+ HGTITGVD+SMNTHLK VK+TLKGK+PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTVAHGTITGVDMSMNTHLKAVKMTLKGKDPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGNNIRY+ILP+SL L+TLLV++ P+ K +
Sbjct: 61 RGNNIRYFILPESLPLDTLLVDDEPKSKAR 90
>gi|195435704|ref|XP_002065819.1| GK18761 [Drosophila willistoni]
gi|194161904|gb|EDW76805.1| GK18761 [Drosophila willistoni]
Length = 124
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 85/91 (93%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T++ ++PV+L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIRNRDPVHLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNN+RY+ILPDSL LETLL+++TP+ K KK
Sbjct: 61 RGNNVRYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|391333356|ref|XP_003741082.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Metaseiulus occidentalis]
Length = 120
Score = 138 bits (348), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 69/95 (72%), Positives = 83/95 (87%), Gaps = 1/95 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLS 59
MKLVRFLMKL++ETV+IELKNGT VHGT+TGVD++MNTHLK VK+TLK PV+L+ LS
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTVTGVDVAMNTHLKNVKMTLKNAAEPVSLETLS 60
Query: 60 VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+RGNNIRYYILPDSL LETLL+++TP+ K KK A
Sbjct: 61 IRGNNIRYYILPDSLPLETLLIDDTPKAKKKKEGA 95
>gi|336375284|gb|EGO03620.1| hypothetical protein SERLA73DRAFT_175163 [Serpula lacrymans var.
lacrymans S7.3]
gi|336388346|gb|EGO29490.1| hypothetical protein SERLADRAFT_457290 [Serpula lacrymans var.
lacrymans S7.9]
Length = 121
Score = 138 bits (347), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 82/91 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNG++VHGTITGVD+ MNTHLKTVK+T + ++P +LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPTSLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY++LPD+L L+TLLV++ P+ K +K
Sbjct: 61 RGNNIRYFVLPDALPLDTLLVDDAPKPKGRK 91
>gi|442757617|gb|JAA70967.1| Putative small nuclear ribonucleoprotein d1 [Ixodes ricinus]
Length = 118
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/85 (76%), Positives = 78/85 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD++MNTHLK VK+T+K + PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREPVQLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRYY+LPDSL LETLL+++TP
Sbjct: 61 RGNNIRYYLLPDSLPLETLLIDDTP 85
>gi|427786235|gb|JAA58569.1| Putative small nuclear ribonucleoprotein d1 [Rhipicephalus
pulchellus]
Length = 120
Score = 138 bits (347), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 65/85 (76%), Positives = 78/85 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD++MNTHLK VK+T+K + PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREPVQLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRYY+LPDSL LETLL+++TP
Sbjct: 61 RGNNIRYYLLPDSLPLETLLIDDTP 85
>gi|412985751|emb|CCO16951.1| predicted protein [Bathycoccus prasinos]
Length = 158
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 75/85 (88%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLV+FL KLNNETV+IELKNGT GTI GVDISMNTHLK+VKLT+KG+NP LDHLS+
Sbjct: 37 MKLVKFLQKLNNETVTIELKNGTTCSGTILGVDISMNTHLKSVKLTVKGRNPQTLDHLSI 96
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGN IRYYILP+SLNL+ LLVE+ P
Sbjct: 97 RGNTIRYYILPESLNLDALLVEDMP 121
>gi|358420583|ref|XP_003584662.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Bos
taurus]
Length = 111
Score = 137 bits (346), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 80/94 (85%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNI Y+ILPDSL L+TLLV P+VK KK A
Sbjct: 61 RGNNIWYFILPDSLPLDTLLVHVEPKVKSKKREA 94
>gi|380025256|ref|XP_003696393.1| PREDICTED: LOW QUALITY PROTEIN: probable small nuclear
ribonucleoprotein Sm D1-like [Apis florea]
Length = 97
Score = 137 bits (346), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 66/85 (77%), Positives = 79/85 (92%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IE KNGT VHGTITGVD++MNTHLKTVK+T+K ++PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIEXKNGTQVHGTITGVDVAMNTHLKTVKMTIKNRDPVQLDTLSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRYYILPDSL LETLL+++TP
Sbjct: 61 RGNNIRYYILPDSLPLETLLIDDTP 85
>gi|392562210|gb|EIW55391.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 122
Score = 137 bits (345), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV++ELKNG+++HGTITGVD+ MNTHLKTVK+T + + P +LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY++LPD+L L+TLLV++ P+ K +K
Sbjct: 61 RGNNIRYFVLPDALPLDTLLVDDAPKPKSRK 91
>gi|148674280|gb|EDL06227.1| mCG21971 [Mus musculus]
Length = 134
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/94 (71%), Positives = 81/94 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 16 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 75
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+G NIRY+ILPDSL L+TLLV+ P+VK +K A
Sbjct: 76 QGTNIRYFILPDSLPLDTLLVDVEPKVKSRKREA 109
>gi|388854881|emb|CCF51562.1| probable small nuclear ribonucleoprotein SNRPD1 [Ustilago hordei]
Length = 134
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNE+V+IELKNGT+VHGT+TGVDI MNTHLKTVK+TL+G+ V LD LS+
Sbjct: 1 MKLVRFLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMTLRGRPAVALDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPD+L L+ LLV++ P+ K K+
Sbjct: 61 RGNNIRYWILPDALPLDMLLVDDAPKPKGKR 91
>gi|19115525|ref|NP_594613.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe 972h-]
gi|12230564|sp|O42661.1|SMD1_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|2664241|emb|CAA15826.1| Sm snRNP core protein Smd1 [Schizosaccharomyces pombe]
Length = 117
Score = 137 bits (345), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 67/91 (73%), Positives = 80/91 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL NETVSIELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+
Sbjct: 1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRYYILPDSL L+TLL++++ + K KK
Sbjct: 61 RGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91
>gi|281212453|gb|EFA86613.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 140
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/78 (83%), Positives = 76/78 (97%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++FLMKL+NETV+IELKNGTI+HGTI+GVD+SMNTHLKTVKLTLKGKNP+NLD LS+RGN
Sbjct: 1 MKFLMKLHNETVTIELKNGTIIHGTISGVDVSMNTHLKTVKLTLKGKNPINLDSLSIRGN 60
Query: 64 NIRYYILPDSLNLETLLV 81
NIRY+ILP+SLNL TLLV
Sbjct: 61 NIRYFILPESLNLGTLLV 78
>gi|164657680|ref|XP_001729966.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
gi|159103860|gb|EDP42752.1| hypothetical protein MGL_2952 [Malassezia globosa CBS 7966]
Length = 120
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNE+V+IELKNGT++HGT+TGVD+ MNTHLK VK+T++G P++LD LS+
Sbjct: 1 MKLVRFLMKLNNESVTIELKNGTVIHGTVTGVDVQMNTHLKAVKMTVRGGEPISLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNN RY+ILPD+L L+TLLV++ PR K K+
Sbjct: 61 RGNNTRYWILPDALPLDTLLVDDAPRPKGKR 91
>gi|325303250|tpg|DAA34761.1| TPA_inf: small nuclear ribonucleoprotein SMD1 [Amblyomma
variegatum]
gi|346469165|gb|AEO34427.1| hypothetical protein [Amblyomma maculatum]
gi|346469167|gb|AEO34428.1| hypothetical protein [Amblyomma maculatum]
Length = 120
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 78/85 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD++MNTHLK VK+T++ + PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMRNREPVQLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRYY+LPDSL LETLL+++TP
Sbjct: 61 RGNNIRYYLLPDSLPLETLLIDDTP 85
>gi|302692404|ref|XP_003035881.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
gi|300109577|gb|EFJ00979.1| hypothetical protein SCHCODRAFT_74336 [Schizophyllum commune
H4-8]
Length = 121
Score = 137 bits (344), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNG++VHGTITGVD+ MNTHLKTVK+T + ++P +LD LS+
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGSVVHGTITGVDMQMNTHLKTVKMTTRNRDPTHLDSLSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGN IRY+ILPD+L L+TLLV++ P+ K K+
Sbjct: 61 RGNTIRYFILPDALPLDTLLVDDAPKPKGKR 91
>gi|358410942|ref|XP_001254398.4| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
gi|359063093|ref|XP_002685437.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Bos taurus]
Length = 118
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 81/94 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFL KL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+GNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 QGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>gi|296490547|tpg|DAA32660.1| TPA: small nuclear ribonucleoprotein D1 polypeptide 16kDa-like
[Bos taurus]
Length = 134
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 81/94 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFL KL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+GNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 QGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>gi|260819208|ref|XP_002604929.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
gi|229290258|gb|EEN60939.1| hypothetical protein BRAFLDRAFT_264344 [Branchiostoma floridae]
Length = 121
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 78/85 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV++ELKNGT VHGTITGVD+SMNTHLK VK+T+K + PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQVHGTITGVDVSMNTHLKAVKMTIKNREPVQLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRY+ILPDSL L+TLL+++TP
Sbjct: 61 RGNNIRYFILPDSLPLDTLLIDDTP 85
>gi|149250230|ref|XP_001481216.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like isoform 2
[Mus musculus]
gi|309264642|ref|XP_003086326.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Mus
musculus]
Length = 119
Score = 136 bits (343), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 67/94 (71%), Positives = 81/94 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+G NIRY+ILPDSL L+TLLV+ P+VK +K A
Sbjct: 61 QGTNIRYFILPDSLPLDTLLVDVEPKVKSRKREA 94
>gi|344269970|ref|XP_003406820.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Loxodonta
africana]
Length = 133
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 80/93 (86%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
+L RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+R
Sbjct: 16 RLYRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIR 75
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
GNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 76 GNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 108
>gi|392589390|gb|EIW78721.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 136 bits (343), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVSIELKNG++V+GTITGVD+ MNTHLKTVK+T + ++P +LD LS+
Sbjct: 1 MKLVRFLMKLNNETVSIELKNGSVVNGTITGVDMQMNTHLKTVKMTARNRDPTSLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY +LPD+L L+TLLV++ P+ K +K
Sbjct: 61 RGNNIRYIVLPDALPLDTLLVDDAPKPKARK 91
>gi|170095247|ref|XP_001878844.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
gi|164646148|gb|EDR10394.1| small nuclear ribonucleoprotein SnRNP [Laccaria bicolor
S238N-H82]
Length = 127
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 80/91 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNG IVHGTITGVD+ MNTHLKTVK+T++ ++P LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGCIVHGTITGVDMQMNTHLKTVKMTMRNRDPTTLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGN +RY++LPD+L L+TLLV++ P+ K +K
Sbjct: 61 RGNTVRYFVLPDALPLDTLLVDDAPKPKGRK 91
>gi|388854491|emb|CCF51878.1| probable small nuclear ribonucleoprotein SNRPD1 [Ustilago hordei]
Length = 134
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNE+V+IELKNGT+VHG++TGVDI MNTHLKTVK+TL+G+ V LD LS+
Sbjct: 1 MKLVRFLMKLNNESVTIELKNGTVVHGSVTGVDIQMNTHLKTVKMTLRGRPAVALDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPD+L L+ LLV++ P+ K K+
Sbjct: 61 RGNNIRYWILPDALPLDMLLVDDAPKPKGKR 91
>gi|357017089|gb|AET50573.1| hypothetical protein [Eimeria tenella]
Length = 125
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 63/93 (67%), Positives = 82/93 (88%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLM+L NET+ +ELKNGT+VHGTI GVD++MNTHLK VKLT+K NPV++DHL++
Sbjct: 1 MKLVRFLMRLANETLVLELKNGTVVHGTIVGVDVAMNTHLKNVKLTVKHSNPVSMDHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPT 93
RG+NIRY+ILPDSL L+TLL+++TP +P + T
Sbjct: 61 RGSNIRYFILPDSLPLDTLLIDDTPIQRPPRET 93
>gi|17945870|gb|AAL48981.1| RE39488p [Drosophila melanogaster]
Length = 124
Score = 136 bits (342), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 84/91 (92%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++ V+L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDHVHLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPDSL LETLL+++TP+ K KK
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTPKSKTKK 91
>gi|410910972|ref|XP_003968964.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Takifugu
rubripes]
Length = 119
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 68/94 (72%), Positives = 80/94 (85%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+T K + P L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTPKNREPTQLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREA 94
>gi|393234430|gb|EJD41993.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 123
Score = 135 bits (341), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 81/90 (90%), Gaps = 2/90 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV IELKNG++V+GTITGVD+ MNTHLKTVKL+ + ++PV+LD LS+
Sbjct: 1 MKLVRFLMKLNNETVQIELKNGSVVNGTITGVDVQMNTHLKTVKLSTRNRDPVSLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGNNIRY++LPD+L L+TLLV++ P KPK
Sbjct: 61 RGNNIRYFVLPDALPLDTLLVDDAP--KPK 88
>gi|313226324|emb|CBY21468.1| unnamed protein product [Oikopleura dioica]
gi|313241294|emb|CBY33571.1| unnamed protein product [Oikopleura dioica]
Length = 127
Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 85/114 (74%), Gaps = 12/114 (10%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL RFLMKL++ETV+IELKNGT V GTI GVDI MNTHLK V+LT+KG+ P LD LS+
Sbjct: 1 MKLARFLMKLSHETVTIELKNGTQVVGTIAGVDICMNTHLKNVRLTVKGREPQQLDALSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
RGNNIRYYILPDS+ L+TLL+++ P+ RG G R RGRGRG+
Sbjct: 61 RGNNIRYYILPDSVPLDTLLIDDGPK------------ARGGGSTRDRGRGRGK 102
>gi|195126373|ref|XP_002007645.1| GI12268 [Drosophila mojavensis]
gi|193919254|gb|EDW18121.1| GI12268 [Drosophila mojavensis]
Length = 124
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 81/85 (95%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV++ELKNGT +HGTITGVD++MNTHLK+VK+T+K ++PV+L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVHLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRY+ILPDSL LETLL+++TP
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTP 85
>gi|195019728|ref|XP_001985042.1| GH14721 [Drosophila grimshawi]
gi|193898524|gb|EDV97390.1| GH14721 [Drosophila grimshawi]
Length = 124
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 81/85 (95%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV++ELKNGT +HGTITGVD++MNTHLK+VK+T+K ++PV+L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTVELKNGTQIHGTITGVDVAMNTHLKSVKMTIKNRDPVHLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRY+ILPDSL LETLL+++TP
Sbjct: 61 RGNNIRYFILPDSLPLETLLIDDTP 85
>gi|327277806|ref|XP_003223654.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like, partial
[Anolis carolinensis]
Length = 94
Score = 135 bits (340), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 80/91 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ET++IELKNGT VHGTITGVD+SMNT+LK VK+TLK + P+ L+ LS+
Sbjct: 1 MKLVRFLMKLSHETITIELKNGTQVHGTITGVDVSMNTYLKAVKMTLKNREPIQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
R NNIRY+ILPDSL L+TLLV+ P+VK KK
Sbjct: 61 RSNNIRYFILPDSLPLDTLLVDVEPKVKSKK 91
>gi|291243481|ref|XP_002741624.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like isoform 1 [Saccoglossus kowalevskii]
Length = 118
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 79/85 (92%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT+V GTITGVD+SMNTHLK VK+T++ K+PV +D LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTLVRGTITGVDVSMNTHLKAVKMTVRNKDPVQIDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRY+ILPDSL L+TLLV++TP
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDDTP 85
>gi|328720327|ref|XP_003247002.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Acyrthosiphon pisum]
Length = 134
Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 63/86 (73%), Positives = 78/86 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLV+FLMKL++ETV++ELKNGT VHGTITGVD++MNTHLKTVK+T+K P++ D LSV
Sbjct: 1 MKLVKFLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKTVKMTMKNNQPIHYDTLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RGNNIRY+ILPDSL LETLLV++ P+
Sbjct: 61 RGNNIRYFILPDSLTLETLLVDDAPK 86
>gi|319411531|emb|CBQ73575.1| probable small nuclear ribonucleoprotein SNRPD1 [Sporisorium
reilianum SRZ2]
Length = 125
Score = 135 bits (339), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 64/91 (70%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNE+V+IELKNGT+VHGT+TGVDI MNTHLKTVK++++G+ V LD LS+
Sbjct: 1 MKLVRFLMKLNNESVTIELKNGTVVHGTVTGVDIQMNTHLKTVKMSVRGRPAVTLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILPD+L L+ LLV++ P+ K K+
Sbjct: 61 RGNNIRYWILPDALPLDMLLVDDAPKPKGKR 91
>gi|440903491|gb|ELR54142.1| Small nuclear ribonucleoprotein Sm D1, partial [Bos grunniens
mutus]
Length = 117
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 67/92 (72%), Positives = 79/92 (85%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RG
Sbjct: 1 LYRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRG 60
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
NNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 NNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 92
>gi|156369567|ref|XP_001628047.1| predicted protein [Nematostella vectensis]
gi|156215013|gb|EDO35984.1| predicted protein [Nematostella vectensis]
Length = 120
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 80/85 (94%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT++HGTITGVD+SMNTHLKTVK+T+K + P+ L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTVIHGTITGVDMSMNTHLKTVKMTVKNREPMQLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRY+ILP+SL L+TLLV++TP
Sbjct: 61 RGNNIRYFILPESLPLDTLLVDDTP 85
>gi|307198074|gb|EFN79127.1| Probable small nuclear ribonucleoprotein Sm D1 [Harpegnathos
saltator]
Length = 123
Score = 134 bits (338), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 65/85 (76%), Positives = 80/85 (94%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT V+GTITGVD++MNTHLKTVK+T+K ++PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVNGTITGVDVAMNTHLKTVKMTIKNRDPVQLETLSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRYYILPDSL LETLL+++TP
Sbjct: 61 RGNNIRYYILPDSLPLETLLIDDTP 85
>gi|449269384|gb|EMC80160.1| Small nuclear ribonucleoprotein Sm D1, partial [Columba livia]
Length = 117
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 79/92 (85%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
+ RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RG
Sbjct: 1 IFRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRG 60
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
NNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 NNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 92
>gi|312077154|ref|XP_003141178.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
gi|307763657|gb|EFO22891.1| small nuclear ribonucleoprotein sm d1 [Loa loa]
Length = 123
Score = 134 bits (337), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 69/103 (66%), Positives = 85/103 (82%), Gaps = 6/103 (5%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL +E+V+IELKNGT+V GTI GVD++MNTHL+TVK+TLK + PV+LD LS+
Sbjct: 1 MKLVRFLMKLAHESVTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVSLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
RGNNIRY ILPD++ L+TLLV++ PR KKP G GRGR
Sbjct: 61 RGNNIRYIILPDTIPLDTLLVDDEPR---KKPARG---GRGRA 97
>gi|326922125|ref|XP_003207302.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein
Sm D1-like [Meleagris gallopavo]
Length = 118
Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 78/90 (86%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNN
Sbjct: 4 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 63
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTA 94
IRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 64 IRYFILPDSLPLDTLLVDVEPKVKSKKREA 93
>gi|321455706|gb|EFX66832.1| hypothetical protein DAPPUDRAFT_302421 [Daphnia pulex]
Length = 125
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 78/85 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV IELKNGT VHGTITGVD++MNTHLK VK+T+K ++PV L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVIIELKNGTQVHGTITGVDVAMNTHLKAVKMTVKNRDPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRYYILPDSL LETLL++++P
Sbjct: 61 RGNNIRYYILPDSLPLETLLLDDSP 85
>gi|351709761|gb|EHB12680.1| Small nuclear ribonucleoprotein Sm D1, partial [Heterocephalus
glaber]
Length = 115
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 78/90 (86%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNN
Sbjct: 1 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 60
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTA 94
IRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 IRYFILPDSLPLDTLLVDVEPKVKSKKREA 90
>gi|402589501|gb|EJW83433.1| small nuclear ribonucleoprotein Sm D1 [Wuchereria bancrofti]
Length = 123
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/102 (67%), Positives = 85/102 (83%), Gaps = 6/102 (5%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL +E+V+IELKNGT+V GTI GVD++MNTHL+TVK+TLK + PV+LD LS+
Sbjct: 1 MKLVRFLMKLAHESVTIELKNGTLVTGTIVGVDVAMNTHLRTVKMTLKNREPVSLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGR 102
RGNNIRY ILPD++ L+TLLV++ PR KKP G GRGR
Sbjct: 61 RGNNIRYIILPDTIPLDTLLVDDEPR---KKPARG---GRGR 96
>gi|281354424|gb|EFB30008.1| hypothetical protein PANDA_018320 [Ailuropoda melanoleuca]
Length = 90
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/90 (73%), Positives = 78/90 (86%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNN
Sbjct: 1 RFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 60
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTA 94
IRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 IRYFILPDSLPLDTLLVDVEPKVKSKKREA 90
>gi|355701859|gb|EHH29212.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca mulatta]
gi|355754930|gb|EHH58797.1| Small nuclear ribonucleoprotein Sm D1, partial [Macaca
fascicularis]
Length = 119
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 66/92 (71%), Positives = 79/92 (85%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
+ RFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RG
Sbjct: 3 IYRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRG 62
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
NNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 63 NNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94
>gi|239789452|dbj|BAH71351.1| ACYPI007411 [Acyrthosiphon pisum]
Length = 155
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 78/86 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLV+FLMKL++ETV++ELKNGT VHGTITGVD++MNTHLK VK+T++ + P++ + LS+
Sbjct: 1 MKLVKFLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKAVKMTVRNQQPIHYETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RGNNIRYYILPDSL LETLLV++ P+
Sbjct: 61 RGNNIRYYILPDSLTLETLLVDDAPK 86
>gi|409074771|gb|EKM75161.1| hypothetical protein AGABI1DRAFT_80275 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 122
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 79/91 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV++ELKNG++VHGTITGVD+ MNTHLKTVK+T + + P LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ LPD+L L+TLLV++ P+ K +K
Sbjct: 61 RGNNIRYFTLPDALPLDTLLVDDAPKPKGRK 91
>gi|326430943|gb|EGD76513.1| small nuclear ribonucleoprotein Sm D1 [Salpingoeca sp. ATCC 50818]
Length = 161
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 80/91 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL+NETV++ELKNGT+VHGT+ GVD++MN H+KTVK+++KG+ LD L+V
Sbjct: 45 MKLVRFLMKLSNETVTVELKNGTVVHGTVAGVDVAMNMHMKTVKMSIKGREATALDTLTV 104
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGN IR+ ILPDSL L+TLL+++TP++K KK
Sbjct: 105 RGNTIRHVILPDSLPLDTLLIDDTPKIKAKK 135
>gi|384484598|gb|EIE76778.1| small nuclear ribonucleoprotein Sm D1 [Rhizopus delemar RA
99-880]
Length = 115
Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/81 (79%), Positives = 76/81 (93%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETVS+E+KNGT+VHGTITGVD+SMNTHLKTVK+T+K ++PV+LD LS+
Sbjct: 1 MKLVRFLMKLNNETVSVEMKNGTVVHGTITGVDMSMNTHLKTVKMTIKNRDPVSLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLV 81
RGNNIR ILPDSL L+TLL+
Sbjct: 61 RGNNIRCVILPDSLPLDTLLI 81
>gi|213401339|ref|XP_002171442.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
gi|211999489|gb|EEB05149.1| small nuclear ribonucleoprotein Sm D1 [Schizosaccharomyces
japonicus yFS275]
Length = 114
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 80/91 (87%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL NET+SIELKNGTIV+GTIT VD+ MNTHLK VK+T+K + PV L+ LS+
Sbjct: 1 MKLVRFLMKLTNETISIELKNGTIVNGTITSVDMQMNTHLKAVKMTVKDREPVPLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RG+N+RY+ILPDSL L+TLL++++P+ K KK
Sbjct: 61 RGSNVRYFILPDSLPLDTLLIDDSPKPKQKK 91
>gi|403412301|emb|CCL99001.1| predicted protein [Fibroporia radiculosa]
Length = 743
Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats.
Identities = 59/79 (74%), Positives = 72/79 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNG++VHGTITGVD+ MNTHLKTVK+T + + P +LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETL 79
RGNNIRY++LPD+L L+TL
Sbjct: 61 RGNNIRYFVLPDALPLDTL 79
>gi|340504873|gb|EGR31279.1| small nuclear ribonucleoprotein sm d1, putative [Ichthyophthirius
multifiliis]
Length = 110
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL N+TV+IELKNGT + G+I GVDI MNTHL VKLT+KGKNPV+LDHL++
Sbjct: 1 MKLVRFLMKLKNQTVTIELKNGTQITGSIIGVDIRMNTHLSKVKLTIKGKNPVSLDHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY++LP++L ++TLLV+E P+V+ ++
Sbjct: 61 RGNNIRYFLLPEALPIDTLLVDEPPKVQKRQ 91
>gi|149720998|ref|XP_001492698.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like [Equus
caballus]
Length = 116
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 79/91 (86%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++FLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGN
Sbjct: 1 MQFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGN 60
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
NIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 NIRYFILPDSLPLDTLLVDVEPKVKSKKREA 91
>gi|296473074|tpg|DAA15189.1| TPA: small nuclear ribonucleoprotein D1 polypeptide 16kDa-like
[Bos taurus]
Length = 119
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/94 (71%), Positives = 79/94 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL RFLMKL++ETV+IELKNGT VHGTIT V++SMNTHLK VK+TLK + PV L+ LS+
Sbjct: 1 MKLARFLMKLSHETVTIELKNGTQVHGTITCVNVSMNTHLKAVKMTLKNREPVQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY+ILPDSL L+TLLV P+VK KK A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVGVEPKVKSKKREA 94
>gi|72005990|ref|XP_785584.1| PREDICTED: small nuclear ribonucleoprotein Sm D1-like
[Strongylocentrotus purpuratus]
Length = 132
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/91 (71%), Positives = 79/91 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK+VKLT K + L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKSVKLTPKNRETQQLESLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRYYILPDSL L+ LLV++TP+ + +K
Sbjct: 61 RGNNIRYYILPDSLPLDQLLVDDTPKARMRK 91
>gi|114050791|ref|NP_001040404.1| small nuclear ribonucleoprotein Sm D1 [Bombyx mori]
gi|95102768|gb|ABF51325.1| small nuclear ribonucleoprotein Sm D1 [Bombyx mori]
Length = 126
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNG++VHGTITGVD++MNTHLK VK+TLK + + L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNREELQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRYY+LPDSL LET L+++TP+ K K+
Sbjct: 61 RGNNIRYYLLPDSLPLETWLIDDTPKGKGKR 91
>gi|357623693|gb|EHJ74743.1| small nuclear ribonucleoprotein Sm D1 [Danaus plexippus]
Length = 125
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/91 (69%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNG++VHGTITGVD++MNTHLK VK+TLK K + L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY++LPDSL LETLL+++ P+ K K+
Sbjct: 61 RGNNIRYFLLPDSLPLETLLIDDAPKGKGKR 91
>gi|431896295|gb|ELK05711.1| Small nuclear ribonucleoprotein Sm D1 [Pteropus alecto]
Length = 122
Score = 132 bits (333), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 78/90 (86%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
+FLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNN
Sbjct: 8 QFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNN 67
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTA 94
IRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 68 IRYFILPDSLPLDTLLVDVEPKVKSKKREA 97
>gi|326368279|ref|NP_001191919.1| small nuclear ribonucleoprotein Sm D1 [Acyrthosiphon pisum]
Length = 135
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 78/86 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLV+FLMKL++ETV++ELKNGT VHGTITGVD++MNTHLK VK+T++ + P++ + LS+
Sbjct: 1 MKLVKFLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKAVKMTVRNQQPIHYETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RGNNIRYYILPDSL LETLLV++ P+
Sbjct: 61 RGNNIRYYILPDSLTLETLLVDDAPK 86
>gi|239789454|dbj|BAH71352.1| ACYPI007411 [Acyrthosiphon pisum]
Length = 122
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/86 (69%), Positives = 78/86 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLV+FLMKL++ETV++ELKNGT VHGTITGVD++MNTHLK VK+T++ + P++ + LS+
Sbjct: 1 MKLVKFLMKLSHETVTLELKNGTSVHGTITGVDVAMNTHLKAVKMTVRNQQPIHYETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RGNNIRYYILPDSL LETLLV++ P+
Sbjct: 61 RGNNIRYYILPDSLTLETLLVDDAPK 86
>gi|294950553|ref|XP_002786687.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239900979|gb|EER18483.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 131 bits (330), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFL KLN+ETV++ELKNGT+VHGT+TGVD+SMNTH+K VK+T++G+NPV +DHL++
Sbjct: 1 MKLVRFLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNPVGMDHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RG+ IRY+ILPD + L+TLL+++ P+ K +
Sbjct: 61 RGSTIRYFILPDHIPLDTLLIDDGPKNKAAR 91
>gi|294944597|ref|XP_002784335.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
gi|239897369|gb|EER16131.1| small nuclear ribonucleoprotein D1, putative [Perkinsus marinus
ATCC 50983]
Length = 114
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 81/91 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFL KLN+ETV++ELKNGT+VHGT+TGVD+SMNTH+K VK+T++G+NPV +DHL++
Sbjct: 1 MKLVRFLQKLNSETVTVELKNGTVVHGTVTGVDVSMNTHMKNVKVTVRGRNPVGMDHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RG+ IRY+ILPD + L+TLL+++ P+ K +
Sbjct: 61 RGSTIRYFILPDHIPLDTLLIDDGPKNKAAR 91
>gi|353238410|emb|CCA70357.1| probable small nuclear ribonucleoprotein SNRPD1 [Piriformospora
indica DSM 11827]
Length = 123
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 63/83 (75%), Positives = 76/83 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNG+IVHGTITGVD+ MNTHLKTV+LT + ++P LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSIVHGTITGVDMQMNTHLKTVRLTARNRDPQPLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEE 83
RGNNIRY+ILPD+L L+TLLV++
Sbjct: 61 RGNNIRYFILPDALPLDTLLVDD 83
>gi|389609361|dbj|BAM18292.1| small ribonucleoprotein particle protein SmD1 [Papilio xuthus]
Length = 125
Score = 130 bits (328), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 78/86 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNG++VHGTITGVD++MNTHLK VK+TLK K + L+ LS+
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGSVVHGTITGVDVAMNTHLKAVKVTLKNKEELQLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RGNNIRYY+LPDSL +ETLL+++ P+
Sbjct: 61 RGNNIRYYLLPDSLPIETLLLDDAPK 86
>gi|226529652|ref|NP_001152576.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|195657675|gb|ACG48305.1| small nuclear ribonucleoprotein Sm D1 [Zea mays]
gi|413922839|gb|AFW62771.1| small nuclear ribonucleoprotein Sm D1 isoform 1 [Zea mays]
gi|413922840|gb|AFW62772.1| small nuclear ribonucleoprotein Sm D1 isoform 2 [Zea mays]
Length = 95
Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 71/76 (93%), Gaps = 2/76 (2%)
Query: 25 VHGTITG--VDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVE 82
++G ++ VDISMNTHLKTVKLTLKGKNPV LDHLSVRGNNIRYYILPDSLNLETLLVE
Sbjct: 4 IYGQLSSDSVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVE 63
Query: 83 ETPRVKPKKPTAGRPV 98
ETPRVKPKKPT+G+P+
Sbjct: 64 ETPRVKPKKPTSGKPL 79
>gi|342319983|gb|EGU11928.1| RING finger domain-containing protein [Rhodotorula glutinis ATCC
204091]
Length = 885
Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats.
Identities = 59/81 (72%), Positives = 72/81 (88%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L RFLMKLNNETV+IELKNGT VHGTITGVD SMNTHLK VK+T++G+ P LD L++RG
Sbjct: 127 LARFLMKLNNETVTIELKNGTSVHGTITGVDPSMNTHLKKVKMTVRGREPQALDSLAIRG 186
Query: 63 NNIRYYILPDSLNLETLLVEE 83
NN+RY+ILPDSL L+TLL+++
Sbjct: 187 NNVRYFILPDSLPLDTLLIDD 207
>gi|401884158|gb|EJT48330.1| hypothetical protein A1Q1_02613 [Trichosporon asahii var. asahii
CBS 2479]
Length = 264
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 80/95 (84%), Gaps = 4/95 (4%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP----VNLD 56
MKLVRFLMKLNNETV+IELKNG+++HGTIT VD MNTHLK+VK++L+ P +LD
Sbjct: 143 MKLVRFLMKLNNETVTIELKNGSVIHGTITSVDPQMNTHLKSVKMSLRNAAPNTPSTHLD 202
Query: 57 HLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
+++RGNNIRY+ILPDSL L+TLLV+++P+ + +K
Sbjct: 203 SIAIRGNNIRYFILPDSLPLDTLLVDDSPKARKRK 237
>gi|157093137|gb|ABV22223.1| small nuclear ribonucleoprotein Sm D1 [Karlodinium micrum]
Length = 112
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 77/87 (88%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M+LVRFLMKL+NE+V +ELKN T+V GTITGVD+SMNTH+K VK T+KGK PV++DHL++
Sbjct: 1 MRLVRFLMKLSNESVVVELKNSTVVAGTITGVDVSMNTHMKNVKFTVKGKPPVSMDHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRV 87
RGNN+RY ILPDS+ L+TLLV++ R+
Sbjct: 61 RGNNVRYVILPDSIPLDTLLVDDAKRL 87
>gi|118394903|ref|XP_001029810.1| Sm protein [Tetrahymena thermophila]
gi|89284080|gb|EAR82147.1| Sm protein [Tetrahymena thermophila SB210]
Length = 111
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/91 (64%), Positives = 78/91 (85%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL +TV+IELKNGT + G+I VDI MNTHL VK+T+KGKNPV+LDHL++
Sbjct: 1 MKLVRFLMKLKGQTVTIELKNGTQIIGSIIAVDIRMNTHLSKVKMTIKGKNPVSLDHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ LPD+L L+TLLV++ P+++ ++
Sbjct: 61 RGNNIRYFQLPDALPLDTLLVDDQPKIQKRQ 91
>gi|290988841|ref|XP_002677099.1| predicted protein [Naegleria gruberi]
gi|284090705|gb|EFC44355.1| predicted protein [Naegleria gruberi]
Length = 118
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/92 (67%), Positives = 79/92 (85%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKL+ E+V+IELKNGT++ GTI GVD+SMNTHLK VK+TLKGKNP+ L+H+SVRG+N
Sbjct: 1 RFLMKLSGESVTIELKNGTVIAGTIVGVDMSMNTHLKAVKMTLKGKNPLPLEHMSVRGSN 60
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
IRY ILP+++NL+ LL + T KPKK TAG+
Sbjct: 61 IRYVILPETINLDNLLQDTTVHPKPKKKTAGQ 92
>gi|317135015|gb|ADV03070.1| SmD1 protein [Amphidinium carterae]
Length = 111
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/94 (63%), Positives = 79/94 (84%), Gaps = 1/94 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M+LVRFLMKL+NE+V +ELKN T+V GTITGVD+SMNTH+K +K T+KGK P+ +DHL++
Sbjct: 1 MRLVRFLMKLSNESVVVELKNSTVVSGTITGVDVSMNTHMKNIKFTVKGKPPIAMDHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
RGNNIRY +LPDS+ L+TLL+E++ R PK A
Sbjct: 61 RGNNIRYVVLPDSIPLDTLLIEDSKRA-PKTKDA 93
>gi|307165950|gb|EFN60277.1| Probable malonyl CoA-acyl carrier protein transacylase,
mitochondrial [Camponotus floridanus]
Length = 463
Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats.
Identities = 60/81 (74%), Positives = 75/81 (92%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKL++ETV+IELKNGT V GTITGVD++MNTHLKTVK+T+K ++P+ L+ LS+RGNN
Sbjct: 345 RFLMKLSHETVTIELKNGTQVTGTITGVDVAMNTHLKTVKMTIKNRDPIQLETLSLRGNN 404
Query: 65 IRYYILPDSLNLETLLVEETP 85
IRYYILPDSL LETLL+++TP
Sbjct: 405 IRYYILPDSLPLETLLIDDTP 425
>gi|440897495|gb|ELR49167.1| hypothetical protein M91_06507, partial [Bos grunniens mutus]
Length = 121
Score = 128 bits (322), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 64/89 (71%), Positives = 76/89 (85%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FL KL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNI
Sbjct: 1 FLTKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNI 60
Query: 66 RYYILPDSLNLETLLVEETPRVKPKKPTA 94
RY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 RYFILPDSLPLDTLLVDVEPKVKSKKREA 89
>gi|443922492|gb|ELU41935.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 73/82 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV++ELKNG++VHGT+TGVD+ MNTHLK VKLT + + P LD LS+
Sbjct: 1 MKLVRFLMKLNNETVTVELKNGSVVHGTLTGVDVQMNTHLKNVKLTSRNREPTALDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVE 82
RGNNIRY++LPD+LNL+ LLV+
Sbjct: 61 RGNNIRYFVLPDALNLDALLVD 82
>gi|112253614|gb|ABI14393.1| small nuclear riboprotein Sm-D1 [Karlodinium micrum]
Length = 112
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 58/87 (66%), Positives = 77/87 (88%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M+LVRFLMKL+NE+V +ELKN T+V GTITGVD+SMNTH+K VK T+KG+ PV++DHL++
Sbjct: 1 MRLVRFLMKLSNESVVVELKNSTVVAGTITGVDVSMNTHMKNVKFTVKGEPPVSMDHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRV 87
RGNN+RY ILPDS+ L+TLLV++ R+
Sbjct: 61 RGNNVRYVILPDSIPLDTLLVDDAKRL 87
>gi|242216937|ref|XP_002474272.1| predicted protein [Postia placenta Mad-698-R]
gi|220726564|gb|EED80509.1| predicted protein [Postia placenta Mad-698-R]
Length = 121
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/91 (65%), Positives = 79/91 (86%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNG++VHGTITGVD+ MNTHLKTVKLT + + P+ + L++
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGSVVHGTITGVDMQMNTHLKTVKLTARNREPMAHETLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGN IRY++LPD++ L+TLLV++ P+ K +K
Sbjct: 61 RGNTIRYFVLPDAIPLDTLLVDDAPKPKNRK 91
>gi|299742717|ref|XP_001832694.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
gi|298405314|gb|EAU89114.2| small nuclear riboprotein Sm-D [Coprinopsis cinerea okayama7#130]
Length = 136
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 59/86 (68%), Positives = 75/86 (87%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNI 65
FLMKLNNETV+IELKNG +VHGTITGVD+ MNT LKTVK+T++ + P +LD LS+RGNNI
Sbjct: 22 FLMKLNNETVTIELKNGAVVHGTITGVDMQMNTFLKTVKMTMRNREPTSLDTLSIRGNNI 81
Query: 66 RYYILPDSLNLETLLVEETPRVKPKK 91
RY+ILPD+L L+TLLV++ P+ K +K
Sbjct: 82 RYFILPDALPLDTLLVDDAPKPKHRK 107
>gi|428673180|gb|EKX74093.1| small ribonucleoprotein D1, putative [Babesia equi]
Length = 119
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/92 (65%), Positives = 79/92 (85%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL NE+V++ELKNGT++ GTI G+DISMNTHLK VK+ K + + LDHL+V
Sbjct: 1 MKLVRFLMKLANESVTLELKNGTVMTGTIIGIDISMNTHLKNVKIVKKDNSVILLDHLTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKP 92
RGN+IRYY+LPDS+ L+TLL+++TP+ KP +P
Sbjct: 61 RGNSIRYYLLPDSIPLDTLLIDDTPKQKPGRP 92
>gi|444723132|gb|ELW63794.1| Small nuclear ribonucleoprotein Sm D1 [Tupaia chinensis]
Length = 124
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 75/87 (86%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKKPTA 94
+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 FILPDSLPLDTLLVDVEPKVKSKKREA 87
>gi|363730104|ref|XP_001235936.2| PREDICTED: small nuclear ribonucleoprotein Sm D1 [Gallus gallus]
Length = 112
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/87 (72%), Positives = 75/87 (86%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKKPTA 94
+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 61 FILPDSLPLDTLLVDVEPKVKSKKREA 87
>gi|390599258|gb|EIN08655.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 144
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 74/80 (92%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKLNNE+V+IELKNG++VHGTITGVD+ MNTHLKTVK++++ + PV+LD LS+RGNN
Sbjct: 29 RFLMKLNNESVTIELKNGSVVHGTITGVDMQMNTHLKTVKMSMRNREPVSLDTLSIRGNN 88
Query: 65 IRYYILPDSLNLETLLVEET 84
IRY++LPD+L L+TLLV++
Sbjct: 89 IRYFVLPDALPLDTLLVDDA 108
>gi|226468934|emb|CAX76495.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 101
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 77/85 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHG+I GVD+SMNTH+++V LTLK ++ +NLD L+V
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRY+ILP+SL L+TLL++E P
Sbjct: 61 RGNNIRYFILPESLPLDTLLIDEGP 85
>gi|56757319|gb|AAW26831.1| SJCHGC01415 protein [Schistosoma japonicum]
gi|226468936|emb|CAX76496.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 127
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 77/85 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHG+I GVD+SMNTH+++V LTLK ++ +NLD L+V
Sbjct: 3 MKLVRFLMKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTV 62
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRY+ILP+SL L+TLL++E P
Sbjct: 63 RGNNIRYFILPESLPLDTLLIDEGP 87
>gi|226468938|emb|CAX76497.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468940|emb|CAX76498.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468942|emb|CAX76499.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226468944|emb|CAX76500.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472890|emb|CAX71131.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472892|emb|CAX71132.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 125
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 60/85 (70%), Positives = 77/85 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT VHG+I GVD+SMNTH+++V LTLK ++ +NLD L+V
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRY+ILP+SL L+TLL++E P
Sbjct: 61 RGNNIRYFILPESLPLDTLLIDEGP 85
>gi|195160693|ref|XP_002021209.1| GL24936 [Drosophila persimilis]
gi|194118322|gb|EDW40365.1| GL24936 [Drosophila persimilis]
Length = 118
Score = 126 bits (317), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/84 (69%), Positives = 78/84 (92%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV+L+ LS+RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLESLSIRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKK 91
+ILPDSL LETLL+++TP+ K KK
Sbjct: 61 FILPDSLPLETLLIDDTPKSKTKK 84
>gi|331241854|ref|XP_003333574.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312564|gb|EFP89155.1| small nuclear ribonucleoprotein D1 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 122
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 58/81 (71%), Positives = 73/81 (90%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL+RFLMKLN ETV+IELKNGT+VHGTI+GVD++MNTHLK VK+T++ + PV LD LS+
Sbjct: 1 MKLIRFLMKLNQETVTIELKNGTVVHGTISGVDVAMNTHLKAVKMTVRNREPVQLDSLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLV 81
RG+N+RY ILPDSL L+TLL+
Sbjct: 61 RGSNVRYIILPDSLPLDTLLI 81
>gi|426195101|gb|EKV45031.1| hypothetical protein AGABI2DRAFT_73218, partial [Agaricus
bisporus var. bisporus H97]
Length = 118
Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/87 (67%), Positives = 75/87 (86%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
RFLMKLNNETV++ELKNG++VHGTITGVD+ MNTHLKTVK+T + + P LD LS+RGNN
Sbjct: 1 RFLMKLNNETVTVELKNGSLVHGTITGVDMQMNTHLKTVKMTTRNREPQTLDSLSIRGNN 60
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKK 91
IRY+ LPD+L L+TLLV++ P+ K +K
Sbjct: 61 IRYFTLPDALPLDTLLVDDAPKPKGRK 87
>gi|328770984|gb|EGF81025.1| hypothetical protein BATDEDRAFT_11263 [Batrachochytrium
dendrobatidis JAM81]
Length = 124
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/100 (61%), Positives = 81/100 (81%), Gaps = 5/100 (5%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
RFLMK NETV+IELKNGT ++GTITGVD+ MNTHLKTVK+T+K K+PV+L+ LS+RGN
Sbjct: 7 FRFLMKCWNETVTIELKNGTTINGTITGVDMQMNTHLKTVKMTVKNKDPVHLETLSIRGN 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
IRY+ILPD+L L+TLL+++ P++K A + VG +G
Sbjct: 67 TIRYFILPDALPLDTLLIDDRPKLK-----ASKKVGDSKG 101
>gi|261195138|ref|XP_002623973.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239587845|gb|EEQ70488.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
SLH14081]
gi|239610667|gb|EEQ87654.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 77/90 (85%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++TP+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDTPKPKNK 90
>gi|384249908|gb|EIE23388.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 118
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 77/93 (82%), Gaps = 1/93 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
+ + RFLMKL NE+V IELKNGT+V GTITGVDI+MNTHLK VKL LKG+ LD +SV
Sbjct: 5 LWITRFLMKLTNESVQIELKNGTVVQGTITGVDIAMNTHLKNVKLILKGQPAQQLDSMSV 64
Query: 61 RGNNIRYYILPDSLNLETLLVE-ETPRVKPKKP 92
RGN IR YILP++LNL+TLLV+ + P+++PK+P
Sbjct: 65 RGNQIRMYILPETLNLDTLLVDLDQPKIRPKRP 97
>gi|405118247|gb|AFR93021.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii
H99]
Length = 129
Score = 125 bits (315), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/87 (70%), Positives = 76/87 (87%), Gaps = 4/87 (4%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK----GKNPVNLD 56
MKLVRFLMKLNNETV+IELKNGT++HGTIT VD MNTHLK+VKLTL+ + P++LD
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLD 60
Query: 57 HLSVRGNNIRYYILPDSLNLETLLVEE 83
+++RGNNIRY+ILPDSL L+TLLV++
Sbjct: 61 SIAIRGNNIRYFILPDSLPLDTLLVDD 87
>gi|154281585|ref|XP_001541605.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411784|gb|EDN07172.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|225563163|gb|EEH11442.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces capsulatus
G186AR]
Length = 123
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 76/90 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTI V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTAKGRDPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++TP+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDTPKPKNK 90
>gi|145243932|ref|XP_001394478.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus niger CBS
513.88]
gi|134079163|emb|CAK40691.1| unnamed protein product [Aspergillus niger]
gi|350631277|gb|EHA19648.1| hypothetical protein ASPNIDRAFT_47972 [Aspergillus niger ATCC
1015]
gi|358367165|dbj|GAA83784.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus kawachii IFO
4308]
Length = 121
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 77/90 (85%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++TP+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLIDDTPKPKNK 90
>gi|67523297|ref|XP_659709.1| hypothetical protein AN2105.2 [Aspergillus nidulans FGSC A4]
gi|40745781|gb|EAA64937.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487477|tpe|CBF86187.1| TPA: small nuclear ribonucleoprotein SmD1, putative
(AFU_orthologue; AFUA_2G05110) [Aspergillus nidulans
FGSC A4]
Length = 121
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 77/90 (85%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++TP+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLIDDTPKPKNK 90
>gi|268531626|ref|XP_002630940.1| C. briggsae CBR-SNR-3 protein [Caenorhabditis briggsae]
Length = 127
Score = 125 bits (313), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 75/88 (85%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K+PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKDPVKLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVK 88
RGNNIRY ILPD L L+TLL+++ PR K
Sbjct: 61 RGNNIRYIILPDPLALDTLLIDDEPRKK 88
>gi|295673314|ref|XP_002797203.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|225681042|gb|EEH19326.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb03]
gi|226282575|gb|EEH38141.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226292265|gb|EEH47685.1| small nuclear ribonucleoprotein Sm D1 [Paracoccidioides
brasiliensis Pb18]
Length = 121
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 76/90 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTTKGRDPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDAPKPKNK 90
>gi|300176808|emb|CBK25377.2| unnamed protein product [Blastocystis hominis]
Length = 100
Score = 124 bits (312), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 57/84 (67%), Positives = 75/84 (89%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKL+NETV+IELKNGTI+ GTITGVD++MNTHLK VK+T+KG+NPV+LD +SVRG+NIRY
Sbjct: 1 MKLSNETVTIELKNGTIIVGTITGVDVAMNTHLKAVKMTIKGRNPVSLDSMSVRGSNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKK 91
ILPDS+NL+ LV+++P+ P +
Sbjct: 61 VILPDSINLDAYLVDDSPKNNPAR 84
>gi|241644572|ref|XP_002409661.1| small nuclear ribonucleoprotein Sm D1, putative [Ixodes
scapularis]
gi|215501397|gb|EEC10891.1| small nuclear ribonucleoprotein Sm D1, putative [Ixodes
scapularis]
Length = 111
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 58/78 (74%), Positives = 71/78 (91%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKL++ETV+IELKNGT VHGTITGVD++MNTHLK VK+T+K + PV LD LS+RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVHGTITGVDVAMNTHLKAVKMTMKNREPVQLDSLSIRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETP 85
Y+LPDSL LETLL+++TP
Sbjct: 61 YLLPDSLPLETLLIDDTP 78
>gi|146322817|ref|XP_749642.2| small nuclear ribonucleoprotein SmD1 [Aspergillus fumigatus
Af293]
gi|129556817|gb|EAL87604.2| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus Af293]
gi|159129049|gb|EDP54163.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
fumigatus A1163]
Length = 120
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 76/90 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|119480211|ref|XP_001260134.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
gi|119408288|gb|EAW18237.1| small nuclear ribonucleoprotein SmD1, putative [Neosartorya
fischeri NRRL 181]
Length = 121
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 76/90 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITAVSPQMNTSLRTVKMTPKGRDPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|358054612|dbj|GAA99538.1| hypothetical protein E5Q_06239 [Mixia osmundae IAM 14324]
Length = 160
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/126 (54%), Positives = 82/126 (65%), Gaps = 13/126 (10%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M+L RFLMKLNNETVSIELKNGT V GTITGVD++MN HLK VK+T+K P +LD LS+
Sbjct: 1 MQLTRFLMKLNNETVSIELKNGTSVGGTITGVDVAMNMHLKAVKMTVKNNEPQSLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEE-----------TPRVKPKKPT--AGRPVGRGRGRGRG 107
RGNNIRY ILPDSL L+TLL+++ V+ + T G VG G G
Sbjct: 61 RGNNIRYVILPDSLPLDTLLIDDGPKPKKNKKKREDAVEEDEVTGAEGELVGEAEGYDDG 120
Query: 108 RGRGRG 113
R R
Sbjct: 121 DDRRRS 126
>gi|341892180|gb|EGT48115.1| hypothetical protein CAEBREN_25098 [Caenorhabditis brenneri]
gi|341901485|gb|EGT57420.1| CBN-SNR-3 protein [Caenorhabditis brenneri]
Length = 126
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 74/88 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVK 88
RGNNIRY ILPD L L+TLL+++ PR K
Sbjct: 61 RGNNIRYIILPDPLALDTLLIDDEPRKK 88
>gi|308502654|ref|XP_003113511.1| CRE-SNR-3 protein [Caenorhabditis remanei]
gi|308263470|gb|EFP07423.1| CRE-SNR-3 protein [Caenorhabditis remanei]
Length = 127
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 74/88 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVK 88
RGNNIRY ILPD L L+TLL+++ PR K
Sbjct: 61 RGNNIRYIILPDPLALDTLLIDDEPRKK 88
>gi|17536583|ref|NP_495306.1| Protein SNR-3 [Caenorhabditis elegans]
gi|2833218|sp|Q10013.1|SMD1_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein Sm D1;
Short=Sm-D1; AltName: Full=snRNP core protein D1
gi|351064345|emb|CCD72707.1| Protein SNR-3 [Caenorhabditis elegans]
Length = 126
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/88 (69%), Positives = 74/88 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+
Sbjct: 1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVK 88
RGNNIRY ILPD L L+TLL+++ PR K
Sbjct: 61 RGNNIRYIILPDPLALDTLLIDDEPRKK 88
>gi|169770091|ref|XP_001819515.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus oryzae RIB40]
gi|238487546|ref|XP_002375011.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|83767374|dbj|BAE57513.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220699890|gb|EED56229.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
flavus NRRL3357]
gi|391864024|gb|EIT73322.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 123
Score = 124 bits (311), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 76/90 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTSLRTVKMTPKGRDPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|115399152|ref|XP_001215165.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
gi|114192048|gb|EAU33748.1| small nuclear ribonucleoprotein Sm D1 [Aspergillus terreus
NIH2624]
Length = 121
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 76/90 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|147857948|emb|CAN80377.1| hypothetical protein VITISV_038700 [Vitis vinifera]
Length = 79
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 61/63 (96%), Positives = 62/63 (98%)
Query: 36 MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
MNTHLKTVKLTLKGKNPV LDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG
Sbjct: 1 MNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 60
Query: 96 RPV 98
RP+
Sbjct: 61 RPM 63
>gi|440640424|gb|ELR10343.1| hypothetical protein GMDG_04725 [Geomyces destructans 20631-21]
Length = 139
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T +G++PV LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTARGRDPVALDTINL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|361128927|gb|EHL00852.1| putative Small nuclear ribonucleoprotein Sm D1 [Glarea lozoyensis
74030]
Length = 132
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 77/101 (76%), Gaps = 2/101 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T +G++P+ LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPIALDTINL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRG 101
RG+ IRYYILPDSL L+TLL+++ P KPK RG
Sbjct: 61 RGSTIRYYILPDSLPLDTLLIDDAP--KPKNKARKEAADRG 99
>gi|339250642|ref|XP_003374306.1| putative LSM domain protein [Trichinella spiralis]
gi|316969410|gb|EFV53511.1| putative LSM domain protein [Trichinella spiralis]
Length = 120
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 78/91 (85%), Gaps = 2/91 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV+IELKNGTI+HGTI+GVD++MNTHL+ VK+TLK V LD LSV
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTILHGTISGVDVAMNTHLRAVKMTLKDGQTVQLDVLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIRY+ILP+++ L+ LV++ P KPK+
Sbjct: 61 RGNNIRYFILPETIPLDQYLVDDLP--KPKR 89
>gi|145536550|ref|XP_001453997.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145538369|ref|XP_001454890.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145543155|ref|XP_001457264.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145544094|ref|XP_001457732.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421741|emb|CAK86600.1| unnamed protein product [Paramecium tetraurelia]
gi|124422667|emb|CAK87493.1| unnamed protein product [Paramecium tetraurelia]
gi|124425079|emb|CAK89867.1| unnamed protein product [Paramecium tetraurelia]
gi|124425550|emb|CAK90335.1| unnamed protein product [Paramecium tetraurelia]
Length = 116
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 64/95 (67%), Positives = 76/95 (80%), Gaps = 1/95 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL NE V +ELKNGT+V GTITGVD+ MNTHL VKLTLKGKNPV LD L++
Sbjct: 1 MKLVRFLMKLKNEQVIVELKNGTVVLGTITGVDVRMNTHLSKVKLTLKGKNPVGLDQLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
RGNNIRY+ L ++L ++ LLV+E+ K KK AG
Sbjct: 61 RGNNIRYFHLSENLQIDNLLVDESIS-KSKKVKAG 94
>gi|406867718|gb|EKD20756.1| small nuclear ribonucleoprotein Sm D1 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 128
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 76/90 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T +G++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTQRGRDPISLDTINL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|358339785|dbj|GAA47780.1| small nuclear ribonucleoprotein D1 [Clonorchis sinensis]
Length = 124
Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/85 (69%), Positives = 76/85 (89%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL++ETV++ELKNGT VHG+I GVD+SMNTHL++V +TLK + +NLD L+V
Sbjct: 1 MKLVRFLMKLSHETVTMELKNGTQVHGSIAGVDVSMNTHLRSVTVTLKNRESMNLDTLTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RGNNIRY+ILP+SL L+TLL++E P
Sbjct: 61 RGNNIRYFILPESLPLDTLLIDEGP 85
>gi|395329081|gb|EJF61470.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 112
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 55/84 (65%), Positives = 74/84 (88%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKLNNETV++ELKNG+++HGTITGVD+ MNTHLKTVK+T + + P +LD LS+RGNNIRY
Sbjct: 1 MKLNNETVTVELKNGSVIHGTITGVDMQMNTHLKTVKMTARNREPTSLDSLSIRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKK 91
++LPD+L L+TLLV++ P+ K +K
Sbjct: 61 FVLPDALPLDTLLVDDAPKPKNRK 84
>gi|315050300|ref|XP_003174524.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|327303162|ref|XP_003236273.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|311339839|gb|EFQ99041.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma gypseum CBS
118893]
gi|326461615|gb|EGD87068.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton rubrum CBS
118892]
gi|326471350|gb|EGD95359.1| small nuclear ribonucleoprotein Sm D1 [Trichophyton tonsurans CBS
112818]
Length = 125
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTI V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDPISLDSINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|296813285|ref|XP_002846980.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
gi|238842236|gb|EEQ31898.1| small nuclear ribonucleoprotein Sm D1 [Arthroderma otae CBS
113480]
Length = 125
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTI V MNT L+TVK+T KG++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGRDPISLDSINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDQPKPKNK 90
>gi|403375854|gb|EJY87900.1| hypothetical protein OXYTRI_22447 [Oxytricha trifallax]
Length = 128
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 65/90 (72%), Positives = 82/90 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV+IELKNGTIV GT+TGVD+SMNTHLK VKLT+KG+ + LDHL++
Sbjct: 1 MKLVRFLMKLNNETVTIELKNGTIVVGTVTGVDVSMNTHLKAVKLTVKGRETIALDHLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGNNIRY++LP+SL LETLLV++ P+++ +
Sbjct: 61 RGNNIRYFLLPESLQLETLLVDDAPKLRAR 90
>gi|342874370|gb|EGU76384.1| hypothetical protein FOXB_13062 [Fusarium oxysporum Fo5176]
Length = 123
Score = 122 bits (307), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 76/90 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTI+ V MNT L+TVK+T+KG+ P++L+ +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTIKGQEPISLETMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|84998206|ref|XP_953824.1| small ribonucleoprotein D1 [Theileria annulata]
gi|65304821|emb|CAI73146.1| small ribonucleoprotein D1, putative [Theileria annulata]
Length = 125
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 77/97 (79%), Gaps = 6/97 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK------NPVN 54
MKLVRFLMKL NE+V++ELKNGT++ GT+ G+DISMNTHLK VK+ KG N V
Sbjct: 1 MKLVRFLMKLANESVTVELKNGTVLTGTVIGIDISMNTHLKNVKVVNKGSDGKEGTNVVV 60
Query: 55 LDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
LDHL+VRGNNIRY+IL DS+ L+TLL+++TP KP K
Sbjct: 61 LDHLTVRGNNIRYFILSDSIPLDTLLIDDTPVQKPSK 97
>gi|452821316|gb|EME28348.1| small nuclear ribonucleoprotein D1 [Galdieria sulphuraria]
Length = 122
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/86 (66%), Positives = 76/86 (88%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL RFLMKLN+ETV++ELKNGT+V GT+TGVD +MNT LK VK+T +GKNPV LD +S+
Sbjct: 1 MKLTRFLMKLNSETVTVELKNGTVVQGTVTGVDHNMNTTLKAVKMTPRGKNPVTLDAMSL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ IRY+ILP+SLN+++LLV+++ R
Sbjct: 61 RGSTIRYFILPESLNVDSLLVDDSIR 86
>gi|322693984|gb|EFY85827.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium acridum CQMa
102]
gi|322708999|gb|EFZ00576.1| small nuclear ribonucleoprotein Sm D1 [Metarhizium anisopliae
ARSEF 23]
Length = 121
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 76/90 (84%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTI+ V MNT L+TVK+T +G++P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTISSVSPQMNTALRTVKMTPRGQDPISLDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|320168484|gb|EFW45383.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 131
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 76/91 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLM+L +ETV +ELKNGT+V GTI GVD MNT L+ VKLT+K K+PV+L+ LS+
Sbjct: 1 MKLVRFLMRLVSETVIVELKNGTVVQGTIVGVDHLMNTMLRNVKLTVKNKDPVSLETLSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGNNIR+YILPDSL L++LL+EE P+ KK
Sbjct: 61 RGNNIRHYILPDSLPLDSLLIEEVPKKSTKK 91
>gi|389632099|ref|XP_003713702.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|351646035|gb|EHA53895.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae 70-15]
gi|440473990|gb|ELQ42759.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae Y34]
gi|440485032|gb|ELQ65031.1| small nuclear ribonucleoprotein Sm D1 [Magnaporthe oryzae P131]
Length = 125
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 74/90 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTI V MNT L+ VK+T +G++P+ LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++TP+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDTPKPKNK 90
>gi|380495060|emb|CCF32683.1| small nuclear ribonucleoprotein Sm D1 [Colletotrichum
higginsianum]
Length = 124
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTIT V MNT L+TVK+T KG++ V+LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|310793785|gb|EFQ29246.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 124
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTIT V MNT L+TVK+T KG++ V+LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|407040985|gb|EKE40459.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 107
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 61/90 (67%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLM+L NE V+IELK+G I+ GTI GVD MN HLK VK+T KGKNP+NLD +V
Sbjct: 1 MKLVRFLMRLTNEVVTIELKSGAILTGTIVGVDNYMNVHLKVVKMTQKGKNPINLDQSTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGN IR ILP+SLNL+T LV++TPR+K K
Sbjct: 61 RGNTIRNIILPESLNLDTYLVDDTPRLKVK 90
>gi|67615310|ref|XP_667428.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis
TU502]
gi|54658569|gb|EAL37203.1| small nuclear ribonucleoprotein smd1 [Cryptosporidium hominis]
Length = 126
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 79/101 (78%), Gaps = 2/101 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL+RFLMKL N +V IELKNGTI+ GTI VD+SMNT+LK VK+++K +NPV+L ++V
Sbjct: 1 MKLIRFLMKLINNSVVIELKNGTIIQGTIVSVDMSMNTYLKNVKMSVKHRNPVSLSQITV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK--PTAGRPVG 99
RGN IRY+ILPDSL L+ LL+++TP+ P + P +G G
Sbjct: 61 RGNTIRYFILPDSLPLDALLIDDTPKQNPPRVNPISGPKFG 101
>gi|429859869|gb|ELA34627.1| small nuclear ribonucleoprotein sm d1 [Colletotrichum
gloeosporioides Nara gc5]
Length = 177
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTIT V MNT L+TVK+T KG++ V+LD +++
Sbjct: 56 MKLVRFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRTVKMTPKGQDAVSLDTMNI 115
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 116 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 145
>gi|119193324|ref|XP_001247268.1| hypothetical protein CIMG_01039 [Coccidioides immitis RS]
gi|258574579|ref|XP_002541471.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|303312169|ref|XP_003066096.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237901737|gb|EEP76138.1| hypothetical protein UREG_00987 [Uncinocarpus reesii 1704]
gi|240105758|gb|EER23951.1| small nuclear ribonucleoprotein Sm D1, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320040082|gb|EFW22016.1| small nuclear ribonucleoprotein SmD1 [Coccidioides posadasii str.
Silveira]
gi|392863489|gb|EAS35757.2| small nuclear ribonucleoprotein Sm D1 [Coccidioides immitis RS]
Length = 120
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTI V MNT L+TVK+T KG+ P++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIASVSPQMNTALRTVKMTPKGREPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++TP+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDTPKPKNK 90
>gi|255932631|ref|XP_002557872.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211582491|emb|CAP80678.1| Pc12g10510 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 123
Score = 121 bits (303), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 74/90 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV++ELKNGTI+HGTI V MNT L+ VK+T KG++PV+LD ++V
Sbjct: 1 MKLVRFLMKCANETVTVELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDPVSLDTINV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDAPKPKNK 90
>gi|183234262|ref|XP_001913982.1| small nuclear ribonucleoprotein Sm D1 [Entamoeba histolytica
HM-1:IMSS]
gi|183237106|ref|XP_655345.2| small nuclear ribonucleoprotein Sm D1 [Entamoeba histolytica
HM-1:IMSS]
gi|169799375|gb|EAL49955.2| small nuclear ribonucleoprotein Sm D1, putative [Entamoeba
histolytica HM-1:IMSS]
gi|169801178|gb|EDS89240.1| small nuclear ribonucleoprotein Sm D1, putative [Entamoeba
histolytica HM-1:IMSS]
gi|449702378|gb|EMD43029.1| LSM domain containing protein [Entamoeba histolytica KU27]
Length = 107
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLM+L NE V+IELK+G ++ GTI GVD MN HLK VK+T KGKNP+NLD +V
Sbjct: 1 MKLVRFLMRLTNEVVTIELKSGAVLTGTIVGVDNYMNVHLKVVKMTQKGKNPINLDQSTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGN IR ILP+SLNL+T LV++TPR+K K
Sbjct: 61 RGNTIRNIILPESLNLDTYLVDDTPRLKVK 90
>gi|328862810|gb|EGG11910.1| hypothetical protein MELLADRAFT_32687 [Melampsora larici-populina
98AG31]
Length = 113
Score = 121 bits (303), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 55/88 (62%), Positives = 75/88 (85%), Gaps = 2/88 (2%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V F ++LN ETV++ELKNGT++HGTI+GVD++MNTHLK VK+T++ + P LD LS+RG+
Sbjct: 1 VFFSIRLNQETVTVELKNGTVIHGTISGVDVAMNTHLKAVKMTVRNREPQQLDSLSIRGS 60
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKK 91
NIRY+ILPDSL L+TLL+++ P KPKK
Sbjct: 61 NIRYFILPDSLPLDTLLIDDAP--KPKK 86
>gi|66357964|ref|XP_626160.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
gi|46227255|gb|EAK88205.1| small nuclear ribonucleoprotein D1. SM domain containing protein
[Cryptosporidium parvum Iowa II]
Length = 137
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/101 (58%), Positives = 79/101 (78%), Gaps = 2/101 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL+RFLMKL N +V IELKNGTI+ GTI VD+SMNT+LK VK+++K +NPV+L ++V
Sbjct: 12 MKLIRFLMKLVNNSVVIELKNGTIIQGTIVTVDMSMNTYLKNVKMSVKHRNPVSLSQITV 71
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK--PTAGRPVG 99
RGN IRY+ILPDSL L+ LL+++TP+ P + P +G G
Sbjct: 72 RGNTIRYFILPDSLPLDALLIDDTPKQNPPRVNPISGPKFG 112
>gi|121710142|ref|XP_001272687.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
gi|119400837|gb|EAW11261.1| small nuclear ribonucleoprotein SmD1, putative [Aspergillus
clavatus NRRL 1]
Length = 123
Score = 120 bits (302), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 59/90 (65%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTI V MNT L+TVK+T KG++P++LD ++V
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTILHGTIISVSPQMNTALRTVKMTPKGRDPISLDTINV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLVDDQPKPKNK 90
>gi|403221309|dbj|BAM39442.1| small ribonucleoprotein D1 [Theileria orientalis strain Shintoku]
Length = 125
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/97 (63%), Positives = 77/97 (79%), Gaps = 6/97 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK------GKNPVN 54
MKLVRFLMKL NE+V++ELKNGT++ GT+ G+DISMNTHLK VK+ K G N V
Sbjct: 1 MKLVRFLMKLANESVTVELKNGTVLTGTVIGIDISMNTHLKNVKVVNKNSDGKDGPNVVL 60
Query: 55 LDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
LDHL+VRGNNIRY+IL DS+ L+TLL+++TP KP K
Sbjct: 61 LDHLTVRGNNIRYFILSDSIPLDTLLIDDTPVQKPSK 97
>gi|156086674|ref|XP_001610746.1| small nuclear ribonucleoprotein Sm subunit [Babesia bovis T2Bo]
gi|154797999|gb|EDO07178.1| small nuclear ribonucleoprotein Sm subunit, putative [Babesia
bovis]
Length = 125
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 78/100 (78%), Gaps = 6/100 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK------NPVN 54
MKLVRFLMKL NE+V++ELKNGT++ GT+ GVDISMNTHLK VK+ K N +
Sbjct: 1 MKLVRFLMKLANESVTVELKNGTVLTGTVIGVDISMNTHLKNVKIVNKDSGSGSEPNYIL 60
Query: 55 LDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
LDHL+VRGNNIRY+IL DSL L+TLL+++TP+ KP + A
Sbjct: 61 LDHLTVRGNNIRYFILSDSLPLDTLLIDDTPKQKPSRVRA 100
>gi|46105460|ref|XP_380534.1| hypothetical protein FG00358.1 [Gibberella zeae PH-1]
gi|408400659|gb|EKJ79736.1| hypothetical protein FPSE_00016 [Fusarium pseudograminearum
CS3096]
Length = 126
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTI+ V MNT L+ VK+T+KG+ P++L+ +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTISSVSPQMNTALRNVKMTIKGQEPISLETMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|167377383|ref|XP_001734381.1| small nuclear ribonucleoprotein sm D1 [Entamoeba dispar SAW760]
gi|165904137|gb|EDR29468.1| small nuclear ribonucleoprotein sm D1, putative [Entamoeba dispar
SAW760]
Length = 107
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 60/90 (66%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLM+L NE V+IELK+G I+ GTI GVD MN HLK VK+T KGKNP++LD +V
Sbjct: 1 MKLVRFLMRLTNEVVTIELKSGVILTGTIVGVDNYMNVHLKVVKMTQKGKNPIDLDQSTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGN IR ILP+SLNL+T LV++TPR+K K
Sbjct: 61 RGNTIRNIILPESLNLDTYLVDDTPRLKVK 90
>gi|384496149|gb|EIE86640.1| small nuclear ribonucleoprotein Sm D1 [Rhizopus delemar RA
99-880]
Length = 108
Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/74 (77%), Positives = 69/74 (93%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKLNNETVS+E+KNGT+VHGTITGVD+SMNTHLKTVK+T+K ++PV+LD LS+RGNNIR
Sbjct: 1 MKLNNETVSVEMKNGTVVHGTITGVDMSMNTHLKTVKMTIKNRDPVSLDSLSIRGNNIRC 60
Query: 68 YILPDSLNLETLLV 81
ILPDSL L+TLL+
Sbjct: 61 VILPDSLPLDTLLI 74
>gi|149626991|ref|XP_001507555.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like
[Ornithorhynchus anatinus]
Length = 125
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 60/97 (61%), Positives = 77/97 (79%), Gaps = 6/97 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKL------TLKGKNPVN 54
MKLVRFLMKL NE+V+IELKNGT++ G + GVDISMNTHLK VK+ KG N +
Sbjct: 1 MKLVRFLMKLANESVTIELKNGTVLTGIVLGVDISMNTHLKNVKIVNKTKAASKGPNFIL 60
Query: 55 LDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
LDHL++RGN+IRY+IL DSL L+TLL+++TP+ KP +
Sbjct: 61 LDHLTIRGNSIRYFILSDSLPLDTLLIDDTPKQKPSR 97
>gi|402087104|gb|EJT82002.1| small nuclear ribonucleoprotein Sm D1 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 123
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/88 (63%), Positives = 72/88 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTI V MNT L+ VK+T +G++P+ LD +++
Sbjct: 1 MKLVRFLMKCTNETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLDAMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVK 88
RG+ IRY+ILPDSL L+TLLV++ P+ K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLVDDAPKPK 88
>gi|302411190|ref|XP_003003428.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
gi|261357333|gb|EEY19761.1| small nuclear ribonucleoprotein Sm D1 [Verticillium albo-atrum
VaMs.102]
Length = 121
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 74/90 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIV+GTI+ V MNT L+ VK+T KG++PV LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPVALDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLVDDAPKPKNK 90
>gi|392577177|gb|EIW70307.1| hypothetical protein TREMEDRAFT_29897 [Tremella mesenterica DSM
1558]
Length = 126
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 59/96 (61%), Positives = 77/96 (80%), Gaps = 5/96 (5%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK----GKNPVNLDHLSVRGN 63
MKLNNETV++ELKNGT++HGTIT VD +M THLK+VK+TL+ G P++LD +++RGN
Sbjct: 1 MKLNNETVTMELKNGTVIHGTITSVDPAMTTHLKSVKMTLRSSPPGTPPISLDSIAIRGN 60
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVG 99
NIRYY+LPDSL L+TLLV++ PR K K+ G PV
Sbjct: 61 NIRYYVLPDSLPLDTLLVDDAPRAK-KRKEGGGPVA 95
>gi|332028488|gb|EGI68529.1| Putative small nuclear ribonucleoprotein Sm D1 [Acromyrmex
echinatior]
Length = 116
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/78 (73%), Positives = 71/78 (91%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKL++ETV+IELKNGT V GTITGVD++MNTHLKTVK+T+K + P+ L+ LS+RGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVTGTITGVDVAMNTHLKTVKMTIKNREPIQLETLSLRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETP 85
YILPDSL LETLL+++TP
Sbjct: 61 YILPDSLPLETLLIDDTP 78
>gi|70949535|ref|XP_744168.1| small nuclear ribonucleoprotein D1 [Plasmodium chabaudi chabaudi]
gi|56524010|emb|CAH81021.1| small nuclear ribonucleoprotein D1, putative [Plasmodium chabaudi
chabaudi]
Length = 123
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 10/104 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-------- 52
MKLV FLMKL NE V+IELKNGT++ G ITGVDI MNTH+K VK+ +K KN
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLISGVITGVDIKMNTHMKNVKVVIKNKNVGEYNANTK 60
Query: 53 --VNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
++LDH+++RGNNIRYYIL DSL L+TLLV++TP+ K K +
Sbjct: 61 QFLSLDHVTIRGNNIRYYILSDSLPLDTLLVDDTPKNKASKDKS 104
>gi|346978140|gb|EGY21592.1| small nuclear ribonucleoprotein Sm D1 [Verticillium dahliae
VdLs.17]
Length = 121
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 74/90 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIV+GTI+ V MNT L+ VK+T KG++P+ LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVNGTISSVSPQMNTALRIVKMTTKGQDPIALDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLVDDAPKPKNK 90
>gi|68063885|ref|XP_673938.1| small nuclear ribonucleoprotein D1 [Plasmodium berghei strain ANKA]
gi|56492149|emb|CAH95780.1| small nuclear ribonucleoprotein D1, putative [Plasmodium berghei]
Length = 123
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 10/104 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-------- 52
MKLV FLMKL NE V+IELKNGT++ G ITGVDI MNTH+K VK+ +K KN
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLISGVITGVDIKMNTHMKNVKVVIKNKNVGEYNANTK 60
Query: 53 --VNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
++LDH+++RGNNIRYYIL DSL L+TLLV++TP+ K K +
Sbjct: 61 QFLSLDHVTIRGNNIRYYILSDSLPLDTLLVDDTPKNKSSKEKS 104
>gi|453080718|gb|EMF08768.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 132
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK +NETV+IELK GTIV GTI V MNT+L+ K+T KG + ++LDH+S+
Sbjct: 1 MKLVRFLMKCSNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMTPKGGSQISLDHVSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++TP+ K K
Sbjct: 61 RGSEIRYYILPDSLPLDTLLIDDTPKPKNK 90
>gi|212528972|ref|XP_002144643.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
gi|210074041|gb|EEA28128.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
marneffei ATCC 18224]
Length = 126
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 71/86 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+ GTI V MNT L+TVK+T KG+ P++LD +++
Sbjct: 1 MKLVRFLMKCTNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ IRYYILPDSL L+TLLV++ P+
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDQPK 86
>gi|224003195|ref|XP_002291269.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220973045|gb|EED91376.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 120
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/86 (63%), Positives = 68/86 (79%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLV+FL KLN E V+IELKNGT++ GT+ GVD +MN HLK KLT KGKNPV+ LSV
Sbjct: 1 MKLVKFLQKLNREQVTIELKNGTVISGTVVGVDATMNAHLKKAKLTAKGKNPVSYATLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ +R +ILPD LNL+ LLVE+ P+
Sbjct: 61 RGSTVRSWILPDGLNLDALLVEDAPK 86
>gi|83315254|ref|XP_730713.1| small nuclear riboprotein Sm-D1 [Plasmodium yoelii yoelii 17XNL]
gi|23490523|gb|EAA22278.1| small nuclear riboprotein Sm-D1-like protein [Plasmodium yoelii
yoelii]
Length = 123
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 61/104 (58%), Positives = 77/104 (74%), Gaps = 10/104 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-------- 52
MKLV FLMKL NE V+IELKNGT++ G ITGVDI MNTH+K VK+ +K KN
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLISGVITGVDIKMNTHMKNVKVVIKNKNVGEYNANTK 60
Query: 53 --VNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
++LDH+++RGNNIRYYIL DSL L+TLLV++TP+ K K +
Sbjct: 61 QFLSLDHVTIRGNNIRYYILSDSLPLDTLLVDDTPKNKTSKDKS 104
>gi|209875591|ref|XP_002139238.1| small nuclear ribonucleoprotein Sm D1 [Cryptosporidium muris RN66]
gi|209554844|gb|EEA04889.1| small nuclear ribonucleoprotein Sm D1, putative [Cryptosporidium
muris RN66]
Length = 114
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 63/107 (58%), Positives = 82/107 (76%), Gaps = 2/107 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL N +V IELKNGTIV GTI VD++MNT+LK VK+++K +NP++L L+V
Sbjct: 1 MKLVRFLMKLVNNSVVIELKNGTIVQGTIVNVDMAMNTYLKNVKMSVKQRNPISLLQLTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEET--PRVKPKKPTAGRPVGRGRGRG 105
RG+ IRY+ILPDSL L+TLL+++T + KP +GRGRG G
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDTPKQKPPKVKPIVTSKIGRGRGLG 107
>gi|242764900|ref|XP_002340864.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
gi|218724060|gb|EED23477.1| small nuclear ribonucleoprotein SmD1, putative [Talaromyces
stipitatus ATCC 10500]
Length = 124
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 56/86 (65%), Positives = 71/86 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+ GTI V MNT L+TVK+T KG+ P++LD +++
Sbjct: 1 MKLVRFLMKCMNETVTIELKNGTILSGTIASVSPQMNTALRTVKMTPKGREPISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ IRYYILPDSL L+TLLV++ P+
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDQPK 86
>gi|124804217|ref|XP_001347937.1| small nuclear ribonucleoprotein D1, putative [Plasmodium falciparum
3D7]
gi|23496190|gb|AAN35850.1|AE014839_59 small nuclear ribonucleoprotein D1, putative [Plasmodium falciparum
3D7]
Length = 126
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 65/125 (52%), Positives = 87/125 (69%), Gaps = 15/125 (12%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-------- 52
MKLV FLMKL NE V+IELKNGT++ G IT VDI MNTH+K VK+ +K KN
Sbjct: 1 MKLVHFLMKLTNENVTIELKNGTLITGIITAVDIKMNTHMKNVKVVIKNKNIAEYNVNTK 60
Query: 53 --VNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP-VGRGRGRGRGRG 109
++L+H+++RGNNIRY+IL DSL L++LLVE+T PKK + + + R +G +G
Sbjct: 61 QFLSLEHVTIRGNNIRYFILSDSLPLDSLLVEDTT---PKKISKDKSFLHRDKGMSKG-A 116
Query: 110 RGRGR 114
+GRGR
Sbjct: 117 KGRGR 121
>gi|367020776|ref|XP_003659673.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
gi|347006940|gb|AEO54428.1| hypothetical protein MYCTH_2296998 [Myceliophthora thermophila
ATCC 42464]
Length = 118
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTI V MNT L+ VK+T +G++P+ L+ L+V
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQDPIPLETLNV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|452837979|gb|EME39920.1| hypothetical protein DOTSEDRAFT_74704 [Dothistroma septosporum
NZE10]
Length = 131
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 72/90 (80%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELK GTIV GT+ V MNT+L+ K+T KG + ++LDH+S+
Sbjct: 1 MKLVRFLMKCTNETVTIELKTGTIVQGTVASVSPQMNTNLRNAKMTPKGGSQISLDHISI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++TP+ K K
Sbjct: 61 RGSEIRYYILPDSLPLDTLLIDDTPKPKNK 90
>gi|156098711|ref|XP_001615371.1| small nuclear ribonucleoprotein Sm D1 [Plasmodium vivax Sal-1]
gi|148804245|gb|EDL45644.1| small nuclear ribonucleoprotein Sm D1, putative [Plasmodium vivax]
Length = 127
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 76/101 (75%), Gaps = 10/101 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-------- 52
MKLV FLMKL NE V+IELKNGT+V G ITGVDI MNTH+K VK+ +K KN
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLVTGIITGVDIKMNTHMKNVKVVIKNKNVGEYNVNTK 60
Query: 53 --VNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
++LDH+++RGNNIRY+IL DSL L+TLLV++TP+ K K
Sbjct: 61 QFLSLDHVTIRGNNIRYFILSDSLPLDTLLVDDTPKQKMSK 101
>gi|116192449|ref|XP_001222037.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
gi|88181855|gb|EAQ89323.1| hypothetical protein CHGG_05942 [Chaetomium globosum CBS 148.51]
Length = 125
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTI V MNT L+ VK+T +G+ P++L+ L+V
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPRGQEPIHLETLNV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|389583797|dbj|GAB66531.1| small nuclear ribonucleoprotein Sm D1, partial [Plasmodium
cynomolgi strain B]
Length = 127
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 61/101 (60%), Positives = 76/101 (75%), Gaps = 10/101 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-------- 52
MKLV FLMKL NE V+IELKNGT+V G ITGVDI MNTH+K VK+ +K KN
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLVTGIITGVDIRMNTHMKNVKVVIKNKNVGEYNVNTK 60
Query: 53 --VNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
++LDH+++RGNNIRY+IL DSL L+TLLV++TP+ K K
Sbjct: 61 QFLSLDHITIRGNNIRYFILSDSLPLDTLLVDDTPKQKISK 101
>gi|358378050|gb|EHK15733.1| hypothetical protein TRIVIDRAFT_64379 [Trichoderma virens Gv29-8]
Length = 120
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTI+ V MN L+TVK+T +G++ + LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTISSVTPQMNVALRTVKMTARGQDSIALDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|440302063|gb|ELP94416.1| small nuclear ribonucleoprotein sm D1, putative [Entamoeba
invadens IP1]
Length = 111
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL RFLM+L NE ++IELK+G+IV GT+ GVD MN HLK V+LT KGKNP+ LD ++
Sbjct: 1 MKLTRFLMRLTNEVLTIELKDGSIVTGTVVGVDNYMNIHLKVVQLTPKGKNPITLDQSTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGNNIR ILP++LNL+T L+++TPR+K K
Sbjct: 61 RGNNIRNIILPETLNLDTYLIDDTPRMKVK 90
>gi|400602721|gb|EJP70323.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 119
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 75/90 (83%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NE V+IELKNGTIV+GTI+ V MNT L+TVK+T +G++P++LD +++
Sbjct: 1 MKLVRFLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQDPISLDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLVDDAPKPKNK 90
>gi|452978143|gb|EME77907.1| hypothetical protein MYCFIDRAFT_57424 [Pseudocercospora fijiensis
CIRAD86]
Length = 129
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 71/90 (78%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELK GTIV GTI V MNT+L+ K+T KG + ++LDH+SV
Sbjct: 1 MKLVRFLMKCTNETVTIELKTGTIVQGTIASVSPQMNTNLRNAKMTPKGGSQISLDHISV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSEIRYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|71033657|ref|XP_766470.1| small nuclear ribonucleoprotein D1 [Theileria parva strain
Muguga]
gi|68353427|gb|EAN34187.1| small nuclear ribonucleoprotein D1, putative [Theileria parva]
Length = 125
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 58/97 (59%), Positives = 76/97 (78%), Gaps = 6/97 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK------GKNPVN 54
MKLVRFLMKL NE +++ELKNGT++ G + G+DISMNTHLK+VK+ K G N V
Sbjct: 1 MKLVRFLMKLANEELTLELKNGTVITGVVIGIDISMNTHLKSVKVVTKGPDGKEGTNVVL 60
Query: 55 LDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
LDHL+VRGNNIRY++L +S+ L+TLL+++TP KP K
Sbjct: 61 LDHLTVRGNNIRYFLLSESIPLDTLLIDDTPVQKPSK 97
>gi|425777993|gb|EKV16140.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum Pd1]
gi|425780629|gb|EKV18635.1| Small nuclear ribonucleoprotein SmD1, putative [Penicillium
digitatum PHI26]
Length = 125
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV++ELKNGTI+HGTI V MNT L+ VK+T KG++ ++LD +++
Sbjct: 1 MKLVRFLMKCANETVTVELKNGTILHGTIVSVSPQMNTSLRAVKMTPKGRDTISLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLVDDAPKPKNK 90
>gi|358391553|gb|EHK40957.1| hypothetical protein TRIATDRAFT_301687 [Trichoderma atroviride
IMI 206040]
Length = 120
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 74/90 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK +NETV++ELKNGTIVHGTI+ V MN L+TVK+T +G++ + LD +++
Sbjct: 1 MKLVRFLMKCSNETVTVELKNGTIVHGTISSVSPQMNVALRTVKMTARGQDSLALDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|367042806|ref|XP_003651783.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
gi|346999045|gb|AEO65447.1| hypothetical protein THITE_2112439 [Thielavia terrestris NRRL
8126]
Length = 121
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGT+VHGTI V MNT L+ VK+T KG++ ++L+ L+V
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTVVHGTIASVSPQMNTALRNVKMTPKGQDAISLETLNV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|346324354|gb|EGX93951.1| small nuclear ribonucleoprotein Sm D1 [Cordyceps militaris CM01]
Length = 119
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 74/90 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NE V+IELKNGTIV+GTI+ V MNT L+TVK+T +G+ P++LD +++
Sbjct: 1 MKLVRFLMKCVNEPVTIELKNGTIVNGTISSVTPQMNTALRTVKMTPRGQEPISLDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLLV++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLVDDAPKPKNK 90
>gi|340513813|gb|EGR44094.1| predicted protein [Trichoderma reesei QM6a]
Length = 120
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 72/90 (80%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI HGTI+ V MN L+TVK+T +G++ + LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIAHGTISSVTPQMNVALRTVKMTARGQDSIALDTMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|407917344|gb|EKG10658.1| hypothetical protein MPH_12237 [Macrophomina phaseolina MS6]
Length = 122
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 73/90 (81%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGT+V+GTI V +MNT L+TVK+T K + + LD +++
Sbjct: 1 MKLVRFLMKCQNETVTIELKNGTVVNGTIASVSPTMNTALRTVKMTPKNRETMTLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+NIRYYILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSNIRYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|221056240|ref|XP_002259258.1| small nuclear ribonucleoprotein d1 [Plasmodium knowlesi strain H]
gi|193809329|emb|CAQ40031.1| small nuclear ribonucleoprotein d1, putative [Plasmodium knowlesi
strain H]
Length = 127
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 60/101 (59%), Positives = 76/101 (75%), Gaps = 10/101 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-------- 52
MKLV FLMKL NE V+IELKNGT+V G ITGVDI MNTH+K VK+ +K +N
Sbjct: 1 MKLVTFLMKLTNENVTIELKNGTLVTGIITGVDIRMNTHMKNVKVVIKNRNVGEYNVNTK 60
Query: 53 --VNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
++LDH+++RGNNIRY+IL DSL L+TLLV++TP+ K K
Sbjct: 61 QFLSLDHVTIRGNNIRYFILSDSLPLDTLLVDDTPKQKISK 101
>gi|336274282|ref|XP_003351895.1| hypothetical protein SMAC_00442 [Sordaria macrospora k-hell]
gi|380096178|emb|CCC06225.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 123
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTI V M+T L+ VK+T KG++ V LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLLV+++ VKPK
Sbjct: 61 RGSTIRYFILPDSLPLDTLLVDDS--VKPK 88
>gi|227206386|dbj|BAH57248.1| AT3G07590 [Arabidopsis thaliana]
Length = 79
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/63 (87%), Positives = 60/63 (95%)
Query: 36 MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
MNTHLKTVK++LKGKNPV LDHLS+RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP AG
Sbjct: 1 MNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAG 60
Query: 96 RPV 98
+ V
Sbjct: 61 KAV 63
>gi|85112250|ref|XP_964309.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
gi|28926086|gb|EAA35073.1| small nuclear ribonucleoprotein Sm D1 [Neurospora crassa OR74A]
Length = 123
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 58/90 (64%), Positives = 73/90 (81%), Gaps = 2/90 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTIVHGTI V M+T L+ VK+T KG++ V LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIVHGTIASVTPRMDTALRNVKMTPKGQDAVALDAMNI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLLV+++ VKPK
Sbjct: 61 RGSTIRYFILPDSLPLDTLLVDDS--VKPK 88
>gi|156030963|ref|XP_001584807.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980]
gi|154700653|gb|EDO00392.1| hypothetical protein SS1G_14262 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 136
Score = 114 bits (286), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 72/90 (80%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T K ++LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGASLSLDTINL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|449304089|gb|EMD00097.1| hypothetical protein BAUCODRAFT_30555 [Baudoinia compniacensis
UAMH 10762]
Length = 130
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 70/90 (77%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELK G IVHGTI V MNT+L+ K+T KG + ++LD +S+
Sbjct: 1 MKLVRFLMKCTNETVTIELKTGAIVHGTIASVSPQMNTNLRAAKMTPKGGSQISLDQISI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSEIRYFILPDSLPLDTLLIDDAPKPKNK 90
>gi|341038646|gb|EGS23638.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 118
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/90 (62%), Positives = 70/90 (77%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNG IVHGTI V M+T L+ V+ T KG+ P +++ L+V
Sbjct: 1 MKLVRFLMKCANETVTIELKNGAIVHGTIASVTPKMDTALRNVRYTPKGEEPYSVESLTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RGN IRYYILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGNTIRYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|154297620|ref|XP_001549236.1| hypothetical protein BC1G_12655 [Botryotinia fuckeliana B05.10]
gi|347842491|emb|CCD57063.1| hypothetical protein [Botryotinia fuckeliana]
Length = 137
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 57/90 (63%), Positives = 71/90 (78%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELKNGTI+HGTIT V MNT L+TVK+T K + LD +++
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTIIHGTITSVSPQMNTALRTVKMTPKNGTSLTLDVINL 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYYILPDSLPLDTLLIDDAPKPKNK 90
>gi|339250640|ref|XP_003374305.1| putative LSM domain protein [Trichinella spiralis]
gi|316969411|gb|EFV53512.1| putative LSM domain protein [Trichinella spiralis]
Length = 154
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 53/81 (65%), Positives = 69/81 (85%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
+KLV FLM L+ ETV+IELKNGTI+HGT+TGVDI+MNTHL+ VK+T+K V LD +SV
Sbjct: 33 IKLVHFLMNLSRETVTIELKNGTILHGTVTGVDIAMNTHLRAVKMTMKDGETVQLDVMSV 92
Query: 61 RGNNIRYYILPDSLNLETLLV 81
RGNNIRY+ILPD+++L+ L+
Sbjct: 93 RGNNIRYFILPDTVSLDCCLM 113
>gi|345564647|gb|EGX47607.1| hypothetical protein AOL_s00083g115 [Arthrobotrys oligospora ATCC
24927]
Length = 132
Score = 114 bits (284), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/90 (58%), Positives = 74/90 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV++ELKNGTI+HGTIT V +MNT L+TV++T++ + P LD +++
Sbjct: 1 MKLVRFLMKCANETVTVELKNGTIIHGTITTVTPTMNTSLRTVRMTVRNREPQTLDTINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY+ILPDSL L+TLL++++ + K K
Sbjct: 61 RGSTIRYFILPDSLPLDTLLIDDSVKAKNK 90
>gi|398389859|ref|XP_003848390.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici
IPO323]
gi|339468265|gb|EGP83366.1| hypothetical protein MYCGRDRAFT_63742 [Zymoseptoria tritici
IPO323]
Length = 133
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 54/90 (60%), Positives = 71/90 (78%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV+IELK GTIV GTI + MNT+L+ K+T +G + + L+H+S+
Sbjct: 1 MKLVRFLMKCTNETVTIELKTGTIVQGTIASISPQMNTNLRNAKMTPRGGSQIALEHVSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L+TLL+++TP+ K K
Sbjct: 61 RGSEIRYYILPDSLPLDTLLIDDTPKPKNK 90
>gi|320592072|gb|EFX04511.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 348
Score = 113 bits (283), Expect = 1e-23, Method: Composition-based stats.
Identities = 55/89 (61%), Positives = 71/89 (79%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
++ RFLMK NETV+IELKNGTIVHGTI V MNT L+ VK+T KG++PV LD +++R
Sbjct: 218 EMERFLMKCANETVTIELKNGTIVHGTIASVSPQMNTALRNVKMTPKGQDPVPLDTINLR 277
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPK 90
G+ IRY+ILPDSL L+TLLV++ P+ K K
Sbjct: 278 GSTIRYFILPDSLPLDTLLVDDAPKPKNK 306
>gi|50543206|ref|XP_499769.1| YALI0A04961p [Yarrowia lipolytica]
gi|49645634|emb|CAG83694.1| YALI0A04961p [Yarrowia lipolytica CLIB122]
Length = 138
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/91 (58%), Positives = 75/91 (82%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL +E+V IELKNGT++ GT+ V +MNT LK VK+T+K + P +LD++++
Sbjct: 1 MKLVRFLMKLTSESVQIELKNGTVLLGTVMSVSNNMNTTLKNVKMTMKNRPPTSLDYINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
RGN IR++ILPDSL L+TLL+++TP+ K +K
Sbjct: 61 RGNTIRFFILPDSLPLDTLLIDDTPKAKRRK 91
>gi|56758868|gb|AAW27574.1| unknown [Schistosoma japonicum]
gi|226468946|emb|CAX76501.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
gi|226472888|emb|CAX71130.1| Small nuclear ribonucleoprotein Sm D1 [Schistosoma japonicum]
Length = 118
Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 70/78 (89%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MKL++ETV+IELKNGT VHG+I GVD+SMNTH+++V LTLK ++ +NLD L+VRGNNIRY
Sbjct: 1 MKLSHETVTIELKNGTQVHGSIAGVDVSMNTHMRSVTLTLKNRDAINLDTLTVRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETP 85
+ILP+SL L+TLL++E P
Sbjct: 61 FILPESLPLDTLLIDEGP 78
>gi|399217465|emb|CCF74352.1| unnamed protein product [Babesia microti strain RI]
Length = 133
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 62/103 (60%), Positives = 77/103 (74%), Gaps = 12/103 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKT---------VKLTLKGKN 51
MKLVRFLMKL NE+V+IELKNGT++ GT+TGVDISMNTHLK + T K N
Sbjct: 1 MKLVRFLMKLANESVTIELKNGTVLTGTVTGVDISMNTHLKNVKVVVKKDPLSDTDKAVN 60
Query: 52 P---VNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
+ LDHL+VRGNNIRY+IL DSL L+TLL+++TP+ KP +
Sbjct: 61 SPQYILLDHLTVRGNNIRYFILSDSLPLDTLLIDDTPKQKPPR 103
>gi|321252513|ref|XP_003192431.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|317458899|gb|ADV20644.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
Length = 121
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 69/80 (86%), Gaps = 4/80 (5%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK----GKNPVNLDHLSVRGN 63
MKLNNETV+IELKNGT++HGTIT VD MNTHLK+VKLTL+ + P++LD +++RGN
Sbjct: 1 MKLNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGN 60
Query: 64 NIRYYILPDSLNLETLLVEE 83
NIRY+ILPDSL L+TLLV++
Sbjct: 61 NIRYFILPDSLPLDTLLVDD 80
>gi|58262702|ref|XP_568761.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134108736|ref|XP_777021.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259704|gb|EAL22374.1| hypothetical protein CNBB5470 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223411|gb|AAW41454.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 121
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 54/80 (67%), Positives = 69/80 (86%), Gaps = 4/80 (5%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK----GKNPVNLDHLSVRGN 63
MKLNNETV+IELKNGT++HGTIT VD MNTHLK+VKLTL+ + P++LD +++RGN
Sbjct: 1 MKLNNETVTIELKNGTVIHGTITSVDPQMNTHLKSVKLTLRSQPSSQPPLSLDSIAIRGN 60
Query: 64 NIRYYILPDSLNLETLLVEE 83
NIRY+ILPDSL L+TLLV++
Sbjct: 61 NIRYFILPDSLPLDTLLVDD 80
>gi|312077152|ref|XP_003141177.1| hypothetical protein LOAG_05592 [Loa loa]
gi|307763656|gb|EFO22890.1| hypothetical protein LOAG_05592 [Loa loa]
Length = 147
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/117 (50%), Positives = 85/117 (72%), Gaps = 4/117 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M L+RFLM+L+++ V+IELKNGT+V G ++GVD++MN HL V +TLK + PV+LD +SV
Sbjct: 10 MMLMRFLMRLHDKFVTIELKNGTVVTGYVSGVDMAMNFHLNRVGMTLKNQKPVSLDAVSV 69
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRG---RGRGRGRGRGRGR 114
RGNNIRY I P++LNL+ L+++ + + T +P G+ RG+G RG GRGR
Sbjct: 70 RGNNIRYIIFPNNLNLDALMIDVPQQKARTRKTPSQPRGQSNAIRGQGVTRG-GRGR 125
>gi|169617530|ref|XP_001802179.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
gi|111059239|gb|EAT80359.1| hypothetical protein SNOG_11947 [Phaeosphaeria nodorum SN15]
Length = 137
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 58/103 (56%), Positives = 74/103 (71%), Gaps = 3/103 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV++ELKNG+IV+GTIT V MN L+TVK T K ++ V LD ++V
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGSIVNGTITSVSPLMNVALRTVKYTPKSRDTVTLDSMTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
RG+ IRY ILPDSL L+TLL+++ P+ K K A + RG
Sbjct: 61 RGSTIRYIILPDSLPLDTLLIDDAPKPKNK---ARKEADRGAA 100
>gi|254574234|ref|XP_002494226.1| hypothetical protein [Komagataella pastoris GS115]
gi|238034025|emb|CAY72047.1| Hypothetical protein PAS_chr4_0781 [Komagataella pastoris GS115]
gi|328353953|emb|CCA40350.1| Probable small nuclear ribonucleoprotein Sm D1 [Komagataella
pastoris CBS 7435]
Length = 115
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 62/115 (53%), Positives = 81/115 (70%), Gaps = 3/115 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKL +E V +ELKNGTIV GTI V SMN +LK VK+T++ +NPV+L+ +++
Sbjct: 1 MKLVRFLMKLISEQVQVELKNGTIVSGTIISVTPSMNINLKNVKMTVRNRNPVSLEFINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR-GRGRGRGRGR 114
RGNN+R ILPD+LNL++LL + VKPK A + RG R GR + R R
Sbjct: 61 RGNNVRIVILPDNLNLDSLLTDSL--VKPKNKVAKKDPIRGGPRVGRDKPRPSAR 113
>gi|396483691|ref|XP_003841766.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
gi|312218341|emb|CBX98287.1| hypothetical protein LEMA_P096960.1 [Leptosphaeria maculans JN3]
Length = 222
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 68/88 (77%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV++ELKNGTIV+GTIT V MN L+ VK T K ++ V LD ++V
Sbjct: 92 MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDSMTV 151
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVK 88
RG+ IRY ILPDSL L+TLL+++ P+ K
Sbjct: 152 RGSTIRYVILPDSLPLDTLLIDDAPKPK 179
>gi|302923356|ref|XP_003053658.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
gi|256734599|gb|EEU47945.1| hypothetical protein NECHADRAFT_75034 [Nectria haematococca mpVI
77-13-4]
Length = 114
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 69/83 (83%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
MK NETV+IELKNGTIVHGTI+ V MNT L+ VK+T+KG++PV+LD +++RG+ IRY
Sbjct: 1 MKCANETVTIELKNGTIVHGTISSVSPQMNTALRNVKMTIKGQDPVSLDTMNIRGSTIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPK 90
+ILPDSL L+TLL+++ P+ K K
Sbjct: 61 FILPDSLPLDTLLIDDAPKPKNK 83
>gi|452004429|gb|EMD96885.1| hypothetical protein COCHEDRAFT_1163040 [Cochliobolus
heterostrophus C5]
Length = 130
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 69/90 (76%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV++ELKNGTIV+GTIT V MN L+ VK T K ++ V LD ++V
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYIILPDSLPLDTLLIDDAPKPKNK 90
>gi|451855386|gb|EMD68678.1| hypothetical protein COCSADRAFT_157089 [Cochliobolus sativus
ND90Pr]
Length = 131
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 69/90 (76%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV++ELKNGTIV+GTIT V MN L+ VK T K ++ V LD ++V
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYIILPDSLPLDTLLIDDAPKPKNK 90
>gi|330943683|ref|XP_003306243.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
gi|311316316|gb|EFQ85673.1| hypothetical protein PTT_19359 [Pyrenophora teres f. teres 0-1]
Length = 132
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 69/90 (76%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV++ELKNGTIV+GTIT V MN L+ VK T K ++ V LD ++V
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYIILPDSLPLDTLLIDDAPKPKNK 90
>gi|189200737|ref|XP_001936705.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187983804|gb|EDU49292.1| small nuclear ribonucleoprotein Sm D1 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 132
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 55/90 (61%), Positives = 69/90 (76%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NETV++ELKNGTIV+GTIT V MN L+ VK T K ++ V LD ++V
Sbjct: 1 MKLVRFLMKCQNETVTVELKNGTIVNGTITSVSPLMNVALRAVKYTPKSRDTVALDTMTV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRY ILPDSL L+TLL+++ P+ K K
Sbjct: 61 RGSTIRYIILPDSLPLDTLLIDDAPKPKNK 90
>gi|167392342|ref|XP_001740112.1| small nuclear ribonucleoprotein sm D1 [Entamoeba dispar SAW760]
gi|165895904|gb|EDR23487.1| small nuclear ribonucleoprotein sm D1, putative [Entamoeba dispar
SAW760]
Length = 100
Score = 105 bits (263), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 66/83 (79%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
M+L NE V+IELK+G I+ GTI GVD MN HLK VK+T KGKNP++LD +VRGN IR
Sbjct: 1 MRLTNEVVTIELKSGMILTGTIVGVDNYMNVHLKVVKMTQKGKNPIDLDQSTVRGNTIRN 60
Query: 68 YILPDSLNLETLLVEETPRVKPK 90
ILP+SLNL+T LV++TPR+K K
Sbjct: 61 IILPESLNLDTYLVDDTPRLKVK 83
>gi|171684873|ref|XP_001907378.1| hypothetical protein [Podospora anserina S mat+]
gi|170942397|emb|CAP68049.1| unnamed protein product [Podospora anserina S mat+]
Length = 125
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 69/90 (76%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMK NE+V+IELK GTI+ GTI V MNT L+ VK+T +G+ + L+ L+V
Sbjct: 1 MKLVRFLMKCQNESVTIELKGGTIISGTIASVSPQMNTALRNVKMTPRGQETIQLETLNV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK 90
RG+ IRYYILPDSL L++LL++++ + K K
Sbjct: 61 RGSTIRYYILPDSLPLDSLLIDDSSKPKNK 90
>gi|378731678|gb|EHY58137.1| small nuclear ribonucleoprotein D1 [Exophiala dermatitidis
NIH/UT8656]
Length = 130
Score = 103 bits (257), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/93 (55%), Positives = 69/93 (74%), Gaps = 7/93 (7%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-------VNLDH 57
RFLMK NETV+IELKNGTIVHGTIT V MNT L+ VK+T K ++ ++LD
Sbjct: 4 RFLMKCANETVTIELKNGTIVHGTITSVSPQMNTALRAVKMTTKNRSSPSAPGETISLDT 63
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVKPK 90
+++RG+ IRY+ILPDSL L+TLL+++ P+ K K
Sbjct: 64 INIRGSTIRYFILPDSLPLDTLLIDDQPKPKNK 96
>gi|388583883|gb|EIM24184.1| Sm-like ribonucleo protein, partial [Wallemia sebi CBS 633.66]
Length = 115
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/83 (60%), Positives = 64/83 (77%)
Query: 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYY 68
KLNNE+V+IELKNG++VHGT+ D SMN HL++VKL + NLD +S+RGNNIRY
Sbjct: 2 KLNNESVTIELKNGSVVHGTMINCDPSMNAHLRSVKLITRNLPACNLDTISIRGNNIRYV 61
Query: 69 ILPDSLNLETLLVEETPRVKPKK 91
ILPDSL L+TLLV++ P+ K K
Sbjct: 62 ILPDSLPLDTLLVDDAPQPKVNK 84
>gi|406603457|emb|CCH45013.1| putative U6 snRNA-associated Sm-like protein LSm4 [Wickerhamomyces
ciferrii]
Length = 112
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 75/111 (67%), Gaps = 2/111 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVRFLMKLNNETV IELKN TI+ GTI V +MN LK VK+ +K ++P LD++++
Sbjct: 1 MKLVRFLMKLNNETVQIELKNQTIIQGTIISVSPNMNIILKKVKMNIKNRDPQLLDYINI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRV--KPKKPTAGRPVGRGRGRGRGRG 109
RGN IR ILPDSLNL+ LL E + + K +K + VG G + RG
Sbjct: 61 RGNMIRDVILPDSLNLDVLLQESSIGLNNKKRKQDSTTSVGGGNVKRVKRG 111
>gi|402589502|gb|EJW83434.1| Sm protein [Wuchereria bancrofti]
Length = 137
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 79/129 (61%), Gaps = 20/129 (15%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M L+RFLM+L+++ V+IELKNGT+V G ++ VD++MN HL V +TLK + PV++D +S+
Sbjct: 1 MMLMRFLMRLHDKFVTIELKNGTVVMGYVSSVDLAMNFHLNRVAMTLKSEKPVSMDAVSI 60
Query: 61 RGNNIRYYILPDSLNLETLLVE---------ETPRVKPKKPTA-----------GRPVGR 100
RGNNIRY I P +LNL+ L+++ +TP + A G P GR
Sbjct: 61 RGNNIRYVIFPKNLNLDALMIDVPQQRKKTRKTPDQAHSQSVAVRGGRGRNSGRGGPCGR 120
Query: 101 GRGRGRGRG 109
R GRG
Sbjct: 121 HPARSGGRG 129
>gi|308802874|ref|XP_003078750.1| small nuclear riboprotein Sm-D1-like protein (ISS) [Ostreococcus
tauri]
gi|116057203|emb|CAL51630.1| small nuclear riboprotein Sm-D1-like protein (ISS), partial
[Ostreococcus tauri]
Length = 133
Score = 101 bits (252), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/56 (82%), Positives = 53/56 (94%)
Query: 31 GVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPR 86
GVD+SMNTHLK VKLTLKGKNP N++HLSVRGN IRYYILPDSLNL+TLLV++TP+
Sbjct: 52 GVDVSMNTHLKQVKLTLKGKNPTNVEHLSVRGNTIRYYILPDSLNLDTLLVDDTPK 107
>gi|170596751|ref|XP_001902883.1| Sm protein [Brugia malayi]
gi|158589165|gb|EDP28269.1| Sm protein [Brugia malayi]
Length = 130
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 50/109 (45%), Positives = 76/109 (69%), Gaps = 4/109 (3%)
Query: 8 MKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRY 67
M+L N+ V+IELKNGT+V G ++ VD++MN HL V +TLK + P ++D +S+RGNNIRY
Sbjct: 1 MRLRNKFVTIELKNGTVVMGYVSSVDLAMNFHLNRVSMTLKSEKPASVDAVSIRGNNIRY 60
Query: 68 YILPDSLNLETLLVEETPRVKPKKPTAGRPVGRG---RGRGRGRGRGRG 113
I P++LNL+ L+++ + + + T+G+ +G RG GR R GRG
Sbjct: 61 IIFPNNLNLDALMIDIPQQTRRTRKTSGQAHSQGVAVRG-GRDRNSGRG 108
>gi|145344118|ref|XP_001416585.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576811|gb|ABO94878.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 56
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/56 (80%), Positives = 52/56 (92%)
Query: 31 GVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPR 86
GVD+SMNTHLK VKLTLKGKNP ++HLSVRGN IRYYILPDSLNL+TLLV++TP+
Sbjct: 1 GVDVSMNTHLKQVKLTLKGKNPTAVEHLSVRGNTIRYYILPDSLNLDTLLVDDTPK 56
>gi|123485483|ref|XP_001324496.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121907380|gb|EAY12273.1| hypothetical protein TVAG_160790 [Trichomonas vaginalis G3]
Length = 111
Score = 96.7 bits (239), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 65/85 (76%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLV FL KL ETV++ELK+ T++ GT+ GVD +MNTHL+ V + G+ L++L++
Sbjct: 1 MKLVHFLRKLVRETVTVELKDNTVIKGTVVGVDSAMNTHLRLVHIKAPGQEEKRLENLTI 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETP 85
RG +IRY ILPD LNL+TLLV+++P
Sbjct: 61 RGASIRYVILPDVLNLDTLLVDDSP 85
>gi|219123909|ref|XP_002182258.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406219|gb|EEC46159.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 110
Score = 94.4 bits (233), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 56/93 (60%), Positives = 73/93 (78%), Gaps = 2/93 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLV+FL KLN E V+IELKNGT+V GT+ GVD +MN HLK K+T++GKNPV LSV
Sbjct: 1 MKLVKFLQKLNREQVTIELKNGTVVQGTVVGVDSTMNCHLKKAKVTVRGKNPVPYATLSV 60
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR--VKPKK 91
RG+ +R +ILP+SLNL+ LLV++ P+ V PK+
Sbjct: 61 RGSTMRSWILPESLNLDALLVDDAPKKSVVPKQ 93
>gi|327348897|gb|EGE77754.1| small nuclear ribonucleoprotein Sm D1 [Ajellomyces dermatitidis
ATCC 18188]
Length = 188
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 58/69 (84%)
Query: 22 GTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLV 81
GTI+HGTIT V MNT L+TVK+T KG++P++LD +++RG+ IRYYILPDSL L+TLLV
Sbjct: 87 GTILHGTITSVSPQMNTALRTVKMTPKGRDPISLDTINIRGSTIRYYILPDSLPLDTLLV 146
Query: 82 EETPRVKPK 90
++TP+ K K
Sbjct: 147 DDTPKPKNK 155
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/24 (87%), Positives = 22/24 (91%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTI 24
MKLVRFLMK NETV+IELKNGTI
Sbjct: 1 MKLVRFLMKCANETVTIELKNGTI 24
>gi|47229386|emb|CAF99374.1| unnamed protein product [Tetraodon nigroviridis]
Length = 206
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 31 GVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPK 90
GVD+SMNTHLK VK+TLK + P L+ LS+RGNNIRY+ILPDSL L+TLLV+ P++K K
Sbjct: 1 GVDVSMNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKIKSK 60
Query: 91 KPTAG 95
K AG
Sbjct: 61 KREAG 65
>gi|340381802|ref|XP_003389410.1| PREDICTED: probable small nuclear ribonucleoprotein Sm D1-like,
partial [Amphimedon queenslandica]
Length = 88
Score = 87.8 bits (216), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/60 (71%), Positives = 53/60 (88%)
Query: 32 VDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
VD+SMNTHLK+VKLTLKG+ P+ LD LS+RGNNIRYYILP+S+ L+TLLV++T R K KK
Sbjct: 1 VDMSMNTHLKSVKLTLKGREPLALDTLSLRGNNIRYYILPESVPLDTLLVDDTTRRKTKK 60
>gi|322782519|gb|EFZ10468.1| hypothetical protein SINV_13020 [Solenopsis invicta]
Length = 67
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 50/55 (90%)
Query: 31 GVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETP 85
GVD++MNTHLKTVK+T+K + P+ L+ LS+RGNNIRYYILPDSL LETLL+++TP
Sbjct: 1 GVDVAMNTHLKTVKMTIKNREPIQLETLSLRGNNIRYYILPDSLPLETLLIDDTP 55
>gi|255722764|ref|XP_002546316.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240130833|gb|EER30395.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 129
Score = 85.1 bits (209), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 68/108 (62%), Gaps = 13/108 (12%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM + N T V++ELKNG ++ GT+ + SMN +LK VKL ++P+ LD
Sbjct: 1 MKLVRFLMNIPNSTNQPVTVELKNGNVISGTMLSCNPSMNLNLKNVKLQQPLQDPILLDF 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+++RGN +R ILPD LN+E++L + ++K G+G G G
Sbjct: 61 INIRGNQVRQIILPDELNIESVLSKSETKIK----------GQGAGPG 98
>gi|68473251|ref|XP_719431.1| hypothetical protein CaO19.7673 [Candida albicans SC5314]
gi|46441248|gb|EAL00547.1| hypothetical protein CaO19.7673 [Candida albicans SC5314]
gi|238880442|gb|EEQ44080.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 116
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 63/91 (69%), Gaps = 3/91 (3%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM + N T +++ELKNG I+ GT+ + SMN HLK V+L ++P+ L +
Sbjct: 1 MKLVRFLMNIPNSTNQPITVELKNGNIISGTLLSCNPSMNLHLKNVRLQQPLQDPILLQY 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVK 88
+++RGN +R +LPD LN+E++L + ++K
Sbjct: 61 INIRGNQVRQILLPDELNIESVLAKSETKIK 91
>gi|255712609|ref|XP_002552587.1| KLTH0C08382p [Lachancea thermotolerans]
gi|238933966|emb|CAR22149.1| KLTH0C08382p [Lachancea thermotolerans CBS 6340]
Length = 139
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 50/103 (48%), Positives = 61/103 (59%), Gaps = 20/103 (19%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKN--------- 51
MKLV FLMKL NE V+IELKNGT V GT+ V MN L VKL+L K+
Sbjct: 1 MKLVHFLMKLRNEQVTIELKNGTTVWGTLQTVSPQMNATLTDVKLSLPNKSGNSAVASVF 60
Query: 52 -----------PVNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
+L ++++RGN IR ILPDSLNL+TLLV+E
Sbjct: 61 LSGGQRNSEQKTTSLQYINIRGNTIRQIILPDSLNLDTLLVDE 103
>gi|354545656|emb|CCE42383.1| hypothetical protein CPAR2_200260 [Candida parapsilosis]
Length = 118
Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM + N T V++ELKNG I++GT+ SMN +LK VKL K ++P+ L +
Sbjct: 1 MKLVRFLMNIPNSTNQPVTVELKNGNIINGTLLSCTPSMNLNLKNVKLQQKYQDPILLQY 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVK 88
++VRGN IR +LP+ LN++++L + R+K
Sbjct: 61 INVRGNQIRQILLPEDLNIDSVLEKSQTRIK 91
>gi|241959636|ref|XP_002422537.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223645882|emb|CAX40545.1| small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 126
Score = 82.4 bits (202), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 63/91 (69%), Gaps = 3/91 (3%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM + N T +++ELKNG I+ GT+ + MN +LK VKL ++P+ L +
Sbjct: 1 MKLVRFLMNIPNSTTQPITVELKNGNIISGTLLSCNPPMNLNLKNVKLQQPLQDPILLQY 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVK 88
+++RGN +R +LPD LN+E++LV+ ++K
Sbjct: 61 INIRGNQVRQILLPDELNIESVLVKSETKIK 91
>gi|448524829|ref|XP_003869020.1| Smd1 protein [Candida orthopsilosis Co 90-125]
gi|380353373|emb|CCG22883.1| Smd1 protein [Candida orthopsilosis]
Length = 116
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM + N T V++ELKNG I++GT+ SMN +LK VKL K ++P+ L +
Sbjct: 1 MKLVRFLMNIPNSTNQPVTVELKNGNIINGTLLSCTPSMNLNLKNVKLQQKYQDPILLQY 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVK 88
++VRGN IR +LP+ LN++++L + ++K
Sbjct: 61 INVRGNQIRQILLPEDLNIDSVLEKSQTKIK 91
>gi|448087362|ref|XP_004196309.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359377731|emb|CCE86114.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 49/127 (38%), Positives = 71/127 (55%), Gaps = 13/127 (10%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM +N T V++ELKNG+ ++G I SMN +K VKL ++P L +
Sbjct: 1 MKLVRFLMNFSNYTSQPVTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQY 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR----------PVGRGRGRGRG 107
+++RGN IR ILPD LN++++L + +K + G +GR +G RG
Sbjct: 61 MNIRGNQIRLVILPDDLNIDSVLAKSAVTIKGQGAGPGSQNTNGIGSKGALGRNKGAPRG 120
Query: 108 RGRGRGR 114
R R R
Sbjct: 121 GARARPR 127
>gi|403218061|emb|CCK72553.1| hypothetical protein KNAG_0K01890 [Kazachstania naganishii CBS
8797]
Length = 122
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK--GKNPVNLDHL 58
M LV+FL KL NE V++ELKNG+ V GT+ V MN L LTL G +P+ + ++
Sbjct: 1 MALVQFLKKLRNEQVTVELKNGSTVWGTVEAVSPQMNVTLSRATLTLATTGPSPMVIQNI 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVE 82
+VRGN IR +LP+SLNL+ LLV+
Sbjct: 61 NVRGNTIRQILLPESLNLDALLVD 84
>gi|71422435|ref|XP_812132.1| small nuclear ribonucleoprotein [Trypanosoma cruzi strain CL
Brener]
gi|71424809|ref|XP_812917.1| small nuclear ribonucleoprotein [Trypanosoma cruzi strain CL
Brener]
gi|70876875|gb|EAN90281.1| small nuclear ribonucleoprotein, putative [Trypanosoma cruzi]
gi|70877751|gb|EAN91066.1| small nuclear ribonucleoprotein, putative [Trypanosoma cruzi]
Length = 98
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 59/89 (66%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ FL +L V IEL N +IV G IT V+ SMNTH++ VK+T KGKNPV + VRG
Sbjct: 9 LIGFLQQLRGTLVEIELLNSSIVSGEITFVEPSMNTHMRHVKITAKGKNPVQAETYVVRG 68
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKK 91
N+IR+ ILP+++N + +L + T K K
Sbjct: 69 NSIRFVILPEAMNTDDVLNKATAAQKKTK 97
>gi|154337565|ref|XP_001565015.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134062054|emb|CAM45146.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 103
Score = 81.6 bits (200), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 55/84 (65%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ FL L V IELKN +IV G I VD +MNT++ VK+T KGKNPV ++ VRG
Sbjct: 13 LITFLQHLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHVKITSKGKNPVEVEEYMVRG 72
Query: 63 NNIRYYILPDSLNLETLLVEETPR 86
+ IRY ILP+SLN +L + + +
Sbjct: 73 STIRYIILPESLNTYDVLKQASAK 96
>gi|222824860|emb|CAM12244.2| small nuclear ribonucleoprotein D1 [Danio rerio]
Length = 85
Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/59 (66%), Positives = 47/59 (79%)
Query: 36 MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
MNTHLK VK+TLK + P L+ LS+RGNNIRY+ILPDSL L+TLLV+ P+VK KK A
Sbjct: 2 MNTHLKAVKMTLKNREPTQLESLSIRGNNIRYFILPDSLPLDTLLVDIEPKVKSKKREA 60
>gi|401422144|ref|XP_003875560.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322491798|emb|CBZ27071.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 103
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 56/84 (66%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ FL +L V IELKN +IV G I+ VD +MNT++ K+T KGKNPV ++ VRG
Sbjct: 13 LITFLQQLRGTLVEIELKNASIVSGEISYVDANMNTYMSHAKITSKGKNPVEVEEYMVRG 72
Query: 63 NNIRYYILPDSLNLETLLVEETPR 86
+ IRY I+P+SLN +L + + +
Sbjct: 73 STIRYIIMPESLNTYDILKQASTK 96
>gi|401837374|gb|EJT41310.1| SMD1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 146
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 60/110 (54%), Gaps = 27/110 (24%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL------------- 47
MKLV FL KL NE V+IELKNGT V GT+ V MN L VKLTL
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPLPRLNKLNGNGL 60
Query: 48 --------------KGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
G N +L ++++RGN IR ILPDSLNL++LLV++
Sbjct: 61 AMSSLYLTGGQQAATGDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110
>gi|146086705|ref|XP_001465619.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|157869411|ref|XP_001683257.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398015293|ref|XP_003860836.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68224141|emb|CAJ04478.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|134069718|emb|CAM68043.1| SmD-1 like small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|322499059|emb|CBZ34131.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 103
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 55/84 (65%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ FL +L V IELKN +IV G I VD +MNT++ K+T KGKNPV ++ VRG
Sbjct: 13 LITFLQQLRGTLVEIELKNASIVSGEIAYVDANMNTYMSHAKITSKGKNPVEVEEYMVRG 72
Query: 63 NNIRYYILPDSLNLETLLVEETPR 86
+ IRY I+P+SLN +L + + +
Sbjct: 73 STIRYIIMPESLNTYDILKQASTK 96
>gi|401625663|gb|EJS43661.1| smd1p [Saccharomyces arboricola H-6]
Length = 146
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 60/110 (54%), Gaps = 27/110 (24%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL------------- 47
MKLV FL KL NE V+IELKNGT V GT+ V MN L VKLTL
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGI 60
Query: 48 --------------KGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
G N +L ++++RGN IR ILPDSLNL++LLV++
Sbjct: 61 AMSSLYLTGGQQATTGDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110
>gi|398365525|ref|NP_011588.3| Smd1p [Saccharomyces cerevisiae S288c]
gi|417779|sp|Q02260.1|SMD1_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D1; Short=Sm-D1;
AltName: Full=snRNP core protein D1
gi|172624|gb|AAA35055.1| D1 snRNP [Saccharomyces cerevisiae]
gi|264807|gb|AAB25229.1| core snRNP polypeptide D1, Smd1p=SMD1 product [Saccharomyces
cerevisiae=yeast, Peptide, 146 aa]
gi|1323102|emb|CAA97076.1| SMD1 [Saccharomyces cerevisiae]
gi|51013145|gb|AAT92866.1| YGR074W [Saccharomyces cerevisiae]
gi|151943351|gb|EDN61664.1| Sm D1 [Saccharomyces cerevisiae YJM789]
gi|190406906|gb|EDV10173.1| small nuclear ribonucleoprotein Sm D1 [Saccharomyces cerevisiae
RM11-1a]
gi|256269109|gb|EEU04445.1| Smd1p [Saccharomyces cerevisiae JAY291]
gi|259146577|emb|CAY79834.1| Smd1p [Saccharomyces cerevisiae EC1118]
gi|285812267|tpg|DAA08167.1| TPA: Smd1p [Saccharomyces cerevisiae S288c]
gi|349578285|dbj|GAA23451.1| K7_Smd1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 146
Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/110 (44%), Positives = 61/110 (55%), Gaps = 27/110 (24%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK------------ 48
MKLV FL KL NE V+IELKNGT V GT+ V MN L VKLTL
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGI 60
Query: 49 ---------GKNP------VNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
G+ P +L ++++RGN IR ILPDSLNL++LLV++
Sbjct: 61 AMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110
>gi|291243483|ref|XP_002741625.1| PREDICTED: small nuclear ribonucleoprotein D1 polypeptide
16kDa-like isoform 2 [Saccoglossus kowalevskii]
Length = 83
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/50 (70%), Positives = 45/50 (90%)
Query: 36 MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETP 85
MNTHLK VK+T++ K+PV +D LS+RGNNIRY+ILPDSL L+TLLV++TP
Sbjct: 1 MNTHLKAVKMTVRNKDPVQIDTLSIRGNNIRYFILPDSLPLDTLLVDDTP 50
>gi|410081485|ref|XP_003958322.1| hypothetical protein KAFR_0G01530 [Kazachstania africana CBS 2517]
gi|372464910|emb|CCF59187.1| hypothetical protein KAFR_0G01530 [Kazachstania africana CBS 2517]
Length = 148
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 61/113 (53%), Gaps = 29/113 (25%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLT-------------- 46
MKLV FL KL NE V++ELKNGT + GT+ V MN L V LT
Sbjct: 1 MKLVNFLKKLRNEQVTVELKNGTTIWGTLQTVSPQMNVTLTDVALTLPNNNHSNSPSALA 60
Query: 47 ---LKGKNPVN------------LDHLSVRGNNIRYYILPDSLNLETLLVEET 84
L GK P N L +++VRGN IR ILPDSLNL++LL++ET
Sbjct: 61 SMYLTGKGPSNEGATSGDKITTSLQYINVRGNTIRQIILPDSLNLDSLLIDET 113
>gi|146411987|ref|XP_001481965.1| hypothetical protein PGUG_05728 [Meyerozyma guilliermondii ATCC
6260]
gi|146393472|gb|EDK41630.1| hypothetical protein PGUG_05728 [Meyerozyma guilliermondii ATCC
6260]
Length = 121
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 59/91 (64%), Gaps = 3/91 (3%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM + + T +++ELKNGT V GT+ SMN LK +KL ++P L
Sbjct: 1 MKLVRFLMNMPSSTGQPITVELKNGTSVSGTLLSCTPSMNLSLKNIKLVQPHQDPQLLQF 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVK 88
+++RGN IR ILPD LN+E++L + ++K
Sbjct: 61 MNIRGNQIRQIILPDDLNIESVLSKSQVKIK 91
>gi|448082775|ref|XP_004195217.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
gi|359376639|emb|CCE87221.1| Piso0_005764 [Millerozyma farinosa CBS 7064]
Length = 129
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 66/115 (57%), Gaps = 3/115 (2%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM +N T V++ELKNG+ ++G I SMN +K VKL ++P L +
Sbjct: 1 MKLVRFLMNFSNYTSQPVTLELKNGSSINGQILSCSPSMNISMKNVKLIRPHQDPQLLQY 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGR 112
+++RGN IR ILPD LN++++L + +K + G G G GR +
Sbjct: 61 MNIRGNQIRLVILPDDLNIDSVLAKSAVTIKGQGAGPGSQSTNGIGTKGAMGRNK 115
>gi|327266174|ref|XP_003217881.1| PREDICTED: hypothetical protein LOC100555980 [Anolis carolinensis]
Length = 264
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/70 (60%), Positives = 52/70 (74%), Gaps = 5/70 (7%)
Query: 22 GTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLV 81
GT VHG ITGVD+SMNT LK VK+TLK + + L+ LS IR +ILPDSL+L+TLLV
Sbjct: 177 GTQVHGIITGVDVSMNTDLKAVKMTLKNRELIQLETLS-----IRNFILPDSLSLDTLLV 231
Query: 82 EETPRVKPKK 91
+ P+VK KK
Sbjct: 232 DVEPKVKSKK 241
>gi|260943870|ref|XP_002616233.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC
42720]
gi|238849882|gb|EEQ39346.1| hypothetical protein CLUG_03474 [Clavispora lusitaniae ATCC
42720]
Length = 115
Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 58/91 (63%), Gaps = 3/91 (3%)
Query: 1 MKLVRFLMKL---NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM L N+ V++ELKNG V+G I SMN +K +KL ++P +
Sbjct: 1 MKLVRFLMTLPSATNQPVTVELKNGNSVNGQILSCSPSMNLSMKNIKLIQPHQDPQLMQF 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVK 88
+++RGN IR +LPD LN+E+LL T ++K
Sbjct: 61 MNIRGNQIRQILLPDDLNIESLLSRSTVKMK 91
>gi|45190808|ref|NP_985062.1| AER205Wp [Ashbya gossypii ATCC 10895]
gi|44983850|gb|AAS52886.1| AER205Wp [Ashbya gossypii ATCC 10895]
gi|374108287|gb|AEY97194.1| FAER205Wp [Ashbya gossypii FDAG1]
Length = 144
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 59/108 (54%), Gaps = 25/108 (23%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-------- 52
MKL FLMKL +E V+IELKNGT V GT+ V MN L V+L+L K P
Sbjct: 1 MKLAGFLMKLRSEQVTIELKNGTTVWGTLQTVSPQMNATLTDVRLSLPAKAPKSALASVY 60
Query: 53 -----------------VNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
+L ++++RGN IR ILPDSLNL+ LLV++
Sbjct: 61 LTGSAPESDASQEDRRTASLQYINIRGNTIRQIILPDSLNLDALLVDK 108
>gi|363753270|ref|XP_003646851.1| hypothetical protein Ecym_5270 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890487|gb|AET40034.1| hypothetical protein Ecym_5270 [Eremothecium cymbalariae
DBVPG#7215]
Length = 142
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 62/113 (54%), Gaps = 25/113 (22%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK---------- 50
MKL FLMKL NE V+IELKNGT V GT+ V MN L V+L+L K
Sbjct: 1 MKLAHFLMKLRNEQVTIELKNGTTVWGTLQTVSPQMNATLTEVRLSLPSKTSKASVASVY 60
Query: 51 -------------NPVNLDHLSVRGNNIRYYILPDSLNLETLLVE--ETPRVK 88
+ +L ++++RGN IR ILPDSLNL+ LLV+ E R+K
Sbjct: 61 LTGAVPQIGEGDRSTTSLQYINIRGNTIRQIILPDSLNLDVLLVDKNEVSRLK 113
>gi|149235059|ref|XP_001523408.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452817|gb|EDK47073.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 125
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 62/91 (68%), Gaps = 3/91 (3%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM + N T +++ELKNG IV+GT+ + MN +LK VKL ++P+ L +
Sbjct: 1 MKLVRFLMNVPNSTNQPITVELKNGNIVNGTLLSANPQMNLNLKNVKLQQLYQDPILLQY 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVK 88
+++RGN IR +LPD LN++ +L + ++K
Sbjct: 61 INIRGNQIRQILLPDDLNIDGVLEKSQTKIK 91
>gi|344303431|gb|EGW33680.1| hypothetical protein SPAPADRAFT_59049 [Spathaspora passalidarum
NRRL Y-27907]
Length = 123
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 5/114 (4%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM + N T +++ELKNGT ++GT+ SMN LK VKL ++ L
Sbjct: 1 MKLVRFLMNIPNSTNQPLTVELKNGTTINGTLMSCSPSMNLSLKNVKLQQPLQDATLLQF 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVKPK--KPTAGRPVGRGRGRGRGRG 109
+++RGN IR +LPD LN++++L + ++K + P+A R G RG
Sbjct: 61 INIRGNQIRQILLPDELNIDSILAKSVTKIKKQGAGPSAKPATTNKRAGGPMRG 114
>gi|365983414|ref|XP_003668540.1| hypothetical protein NDAI_0B02620 [Naumovozyma dairenensis CBS 421]
gi|343767307|emb|CCD23297.1| hypothetical protein NDAI_0B02620 [Naumovozyma dairenensis CBS 421]
Length = 153
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/117 (42%), Positives = 61/117 (52%), Gaps = 34/117 (29%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL------------- 47
MKLV FL KL NE V+IELKNGT V GT+ V MNT L VKL+L
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQTVSPQMNTTLTDVKLSLPRNASQGISAGSV 60
Query: 48 --------------KGKNPV-------NLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
NP +L ++++RGN IR ILPDSLNL++LLV+E
Sbjct: 61 AIASVYLTNGTSGTSNNNPTGIESSTTSLQYINIRGNTIRQIILPDSLNLDSLLVDE 117
>gi|444320507|ref|XP_004180910.1| hypothetical protein TBLA_0E03370 [Tetrapisispora blattae CBS 6284]
gi|387513953|emb|CCH61391.1| hypothetical protein TBLA_0E03370 [Tetrapisispora blattae CBS 6284]
Length = 144
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 60/108 (55%), Gaps = 25/108 (23%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL-KGKNP------- 52
MKLV FL KL NE ++IELKNGT + GT+ V MN L + L+L KNP
Sbjct: 1 MKLVNFLKKLRNEQLTIELKNGTTIWGTLQTVSPQMNVTLTDITLSLPTNKNPQAQAAFF 60
Query: 53 -----------------VNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
+ L +++VRGN IR ILPDSLNL++LL++E
Sbjct: 61 LASNSNNTSSNSSSNSDIQLQYINVRGNTIRQIILPDSLNLDSLLIDE 108
>gi|366997735|ref|XP_003683604.1| hypothetical protein TPHA_0A00850 [Tetrapisispora phaffii CBS 4417]
gi|357521899|emb|CCE61170.1| hypothetical protein TPHA_0A00850 [Tetrapisispora phaffii CBS 4417]
Length = 156
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 59/116 (50%), Gaps = 33/116 (28%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLT-------------- 46
MKLV FL KL NE V+IELKNGT V GT+ V MN L VKL+
Sbjct: 5 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNATLTDVKLSLPHNKNSSRSKVVN 64
Query: 47 -------------------LKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
L G +L ++++RGN IR ILPDSLNL++LLV+E
Sbjct: 65 PTALASLYLIDNQSNNVNDLNGDTTTSLQYINIRGNTIRQIILPDSLNLDSLLVDE 120
>gi|367013560|ref|XP_003681280.1| hypothetical protein TDEL_0D04850 [Torulaspora delbrueckii]
gi|359748940|emb|CCE92069.1| hypothetical protein TDEL_0D04850 [Torulaspora delbrueckii]
Length = 150
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 58/114 (50%), Gaps = 31/114 (27%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL------------- 47
MKLV FL KL NE V++ELKNGT V GT+ V MN L V+L+L
Sbjct: 1 MKLVYFLKKLRNEQVTVELKNGTTVWGTLQTVSPQMNVTLTDVQLSLPRSTFNNAGSNAL 60
Query: 48 ------------------KGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
K +L ++++RGN IR ILPDSLNL+ LLV+E
Sbjct: 61 AGVYLADGQTSTNSAGGGMAKTTTSLQYINIRGNTIRQIILPDSLNLDALLVDE 114
>gi|294654851|ref|XP_456936.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
gi|199429198|emb|CAG84914.2| DEHA2A13948p [Debaryomyces hansenii CBS767]
Length = 131
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 3/91 (3%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLVRFLM L N T +++ELKNG ++G I SMN +K +KL+ ++P L
Sbjct: 1 MKLVRFLMNLPNATNQPITVELKNGNSINGQILSCSPSMNLSMKNIKLSQPHQDPQLLQF 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVK 88
+++RGN IR +LPD LN++ +L ++K
Sbjct: 61 INIRGNQIRQILLPDELNVDNVLARSVVKIK 91
>gi|50306519|ref|XP_453233.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642367|emb|CAH00329.1| KLLA0D03773p [Kluyveromyces lactis]
Length = 141
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/105 (41%), Positives = 57/105 (54%), Gaps = 22/105 (20%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL------------- 47
M+L FL KL NE VSIELKNGT V G + V MN L V+LTL
Sbjct: 1 MQLTGFLKKLKNERVSIELKNGTTVWGIVRSVSPQMNVSLTDVRLTLPTKTSEATLAAVL 60
Query: 48 ---------KGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
+ K +L+ +++RGN IR ILPDS+NL+ LLV++
Sbjct: 61 LSGGSTQGQESKRTTSLEFINIRGNTIRQIILPDSINLDALLVDQ 105
>gi|342181938|emb|CCC91417.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma congolense
IL3000]
Length = 106
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 53/79 (67%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ FL +L V IE+ N TI G IT V+ +MNTH++ VK+T KGKNP +D V G
Sbjct: 9 LIGFLQQLRGTQVEIEMMNSTIATGEITFVEPNMNTHMRHVKITAKGKNPEMVDTYMVCG 68
Query: 63 NNIRYYILPDSLNLETLLV 81
+ IRY I+P+++N + +L+
Sbjct: 69 SKIRYVIMPEAINTDDVLL 87
>gi|72391282|ref|XP_845935.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma brucei TREU927]
gi|9837174|gb|AAG00461.1|AF280393_1 Sm-D1 [Trypanosoma brucei]
gi|62175276|gb|AAX69421.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma brucei]
gi|70802471|gb|AAZ12376.1| small nuclear ribonucleoprotein SmD1 [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261329420|emb|CBH12401.1| SmD-1 like small nuclear ribonucleoprotein,putative [Trypanosoma
brucei gambiense DAL972]
Length = 106
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 53/79 (67%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ FL +L V IE+ N TIV G IT V+ +MNT+++ VK+T KGKNP + V G
Sbjct: 9 LIGFLQQLRGTQVEIEMMNSTIVTGEITFVEANMNTYMRHVKITAKGKNPEMAETYMVCG 68
Query: 63 NNIRYYILPDSLNLETLLV 81
+ IRY ILP+++N + +LV
Sbjct: 69 SKIRYVILPEAMNTDDVLV 87
>gi|50291695|ref|XP_448280.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527592|emb|CAG61241.1| unnamed protein product [Candida glabrata]
Length = 151
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/125 (39%), Positives = 65/125 (52%), Gaps = 31/125 (24%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL--------------- 47
LV FL KL NE V++ELKNGT V GT+ V MN + V L+L
Sbjct: 4 LVNFLKKLKNEQVTLELKNGTTVWGTLQSVSSQMNVTVTDVVLSLPKSQSGKVSGGPGAL 63
Query: 48 ------------KGKN---PVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKP 92
K N V+L ++++RGN IR ILPDSLNL++LLV+E +VK K
Sbjct: 64 ASVYLVNNAQPDKANNDDGSVSLQYMNIRGNTIRQIILPDSLNLDSLLVDEA-QVKRLKK 122
Query: 93 TAGRP 97
+ +P
Sbjct: 123 ASAKP 127
>gi|254578406|ref|XP_002495189.1| ZYRO0B05456p [Zygosaccharomyces rouxii]
gi|238938079|emb|CAR26256.1| ZYRO0B05456p [Zygosaccharomyces rouxii]
Length = 143
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 59/105 (56%), Gaps = 22/105 (20%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL------------- 47
MKLV FL KL NE V++ELKNGT V GT+ V MN L V+L+L
Sbjct: 3 MKLVNFLKKLRNEQVTVELKNGTTVWGTLQTVSPQMNATLTDVRLSLPRSTSNSSTLASV 62
Query: 48 ---------KGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
+ +L ++++RG+ IR ILPDSLN+++LLV+E
Sbjct: 63 YLSDGSLSQNEPSTTSLQYINIRGSTIRQIILPDSLNIDSLLVDE 107
>gi|366990427|ref|XP_003674981.1| hypothetical protein NCAS_0B05250 [Naumovozyma castellii CBS 4309]
gi|342300845|emb|CCC68609.1| hypothetical protein NCAS_0B05250 [Naumovozyma castellii CBS 4309]
Length = 152
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/116 (41%), Positives = 60/116 (51%), Gaps = 33/116 (28%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-------GKNPV 53
MKLV FL KL NE V+IELKNGT V GT+ V MN L VKL+L P+
Sbjct: 1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQTVSPQMNATLTDVKLSLPHNSSHGVSAGPI 60
Query: 54 --------------------------NLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
+L ++++RGN IR ILPDSLNL++LLV+E
Sbjct: 61 AMASVYLTNGETSTDSSSNSNAGRTTSLQYINIRGNTIRQIILPDSLNLDSLLVDE 116
>gi|340054663|emb|CCC48964.1| putative small nuclear ribonucleoprotein [Trypanosoma vivax Y486]
Length = 100
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ FL +L V IEL N T+ G I V+ +MNTH++ VK+T KGKNP ++ VRG
Sbjct: 9 LIGFLQQLRGTLVEIELNNSTVASGEIAFVEPNMNTHMRHVKITEKGKNPELVETYMVRG 68
Query: 63 NNIRYYILPDSLNLETLLVEET-PRVKPKKPT 93
+ IRY ILP+++N + +L + + R K KP+
Sbjct: 69 SKIRYVILPEAMNTDDVLKKASAARSKSGKPS 100
>gi|399949948|gb|AFP65604.1| small nuclear ribonucleoprotein D1 [Chroomonas mesostigmatica
CCMP1168]
Length = 90
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 49/82 (59%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL K+ E V+IELKNG + G I +D MN + K K TL +N + +DH+ +
Sbjct: 1 MKLKILFQKILEENVTIELKNGVYISGLIVDIDKHMNIYFKNAKRTLNERNTIFIDHMFI 60
Query: 61 RGNNIRYYILPDSLNLETLLVE 82
RGN IRY ILP+ N +++ +
Sbjct: 61 RGNKIRYIILPNWFNFDSVFFK 82
>gi|344230588|gb|EGV62473.1| hypothetical protein CANTEDRAFT_109388 [Candida tenuis ATCC
10573]
Length = 114
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/93 (39%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 1 MKLVRFLMKLNNET---VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDH 57
MKLV FLM L T V++ELKNG V+G + +MN LK +KL ++ L++
Sbjct: 1 MKLVSFLMHLPGSTSHPVTVELKNGNSVNGQVLSCSPTMNLALKNIKLIQPHQDAQFLNY 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPRVKPK 90
+++RGN IR +LP+ LNL+ +L + K K
Sbjct: 61 MNIRGNQIRQVLLPEDLNLDAVLAKCVQNTKSK 93
>gi|396080757|gb|AFN82378.1| small nuclear Sm-like ribonucleoprotein [Encephalitozoon romaleae
SJ-2008]
Length = 99
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 5/96 (5%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL+RFL K E V +E K G + G IT VD +MN ++ + + V +V
Sbjct: 1 MKLIRFLKKCKGEKVKVETKEGRKIEGRITSVDKTMNVEMEDAVV-----DGVPASTYTV 55
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
RG++IRY + D ++ + LLV++ PR + K A R
Sbjct: 56 RGSSIRYIMFRDDIDFKPLLVDDRPRNRTKDQEATR 91
>gi|195378767|ref|XP_002048153.1| GJ11498 [Drosophila virilis]
gi|194155311|gb|EDW70495.1| GJ11498 [Drosophila virilis]
Length = 80
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 38/41 (92%)
Query: 45 LTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETP 85
+T+K ++PV+L+ LS+RGNNIRY+ILPDSL LETLL+++TP
Sbjct: 1 MTIKNRDPVHLESLSIRGNNIRYFILPDSLPLETLLIDDTP 41
>gi|67601489|ref|XP_666403.1| aspartyl protease-like [Cryptosporidium hominis TU502]
gi|54657392|gb|EAL36172.1| aspartyl protease-like [Cryptosporidium hominis]
Length = 128
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
V+IELK+G + GT+T V+ +MN L+ V T++ PV+L+ +RG+ IR+ ILPD L
Sbjct: 18 VTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSLEQCYLRGSQIRFCILPDML 77
Query: 75 N---LETLLVEETPRVKP------KKPTAGRPVGRGRGRGR-GRG 109
+ L R KK A R + RG RGR GRG
Sbjct: 78 KNAPMFKLAANAKNRASVLGAAGNKKAFAARFISRGTSRGRSGRG 122
>gi|302811572|ref|XP_002987475.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
gi|300144881|gb|EFJ11562.1| hypothetical protein SELMODRAFT_183167 [Selaginella moellendorffii]
Length = 135
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + GT+ + + N L+ + T K L+H+ VRG+
Sbjct: 9 VKLLHEAEGHVVTVELKSGELYRGTLIECEDNWNCQLENITYTAKDGKVSQLEHVFVRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+R+ I+PD L + ++K K +AG VGRGR R + R GRG
Sbjct: 69 KVRFMIIPDMLKNAPMFKRLEAKIK-GKGSAGIGVGRGRAVSMRAKARAAGRG 120
>gi|303388061|ref|XP_003072265.1| small nuclear Sm-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
gi|303301404|gb|ADM10905.1| small nuclear Sm-like ribonucleoprotein [Encephalitozoon
intestinalis ATCC 50506]
Length = 99
Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL+RFL K NE V IE K G V G + +D +MN + + + PV+ +V
Sbjct: 1 MKLIRFLRKCKNEKVRIETKEGRKVEGKMVSIDKTMNVEMVD---AIVDELPVS--TYTV 55
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
RG++IRY + D ++ + LL+++ PR K K+ GR
Sbjct: 56 RGSSIRYIMFRDDIDFKPLLIDDRPRNKIKEQGEGR 91
>gi|330038573|ref|XP_003239635.1| small nuclear ribonucleoprotein D1 [Cryptomonas paramecium]
gi|327206559|gb|AEA38737.1| small nuclear ribonucleoprotein D1 [Cryptomonas paramecium]
Length = 88
Score = 62.4 bits (150), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 47/69 (68%)
Query: 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILP 71
NETV+IELKNG I+HG + D MN +LK +K T K + ++ +S+RG++I+Y ILP
Sbjct: 11 NETVTIELKNGLILHGIMLNADKYMNIYLKKIKKTNFSKINLEIESISIRGSSIKYLILP 70
Query: 72 DSLNLETLL 80
+N +++
Sbjct: 71 IWINFDSVF 79
>gi|66362186|ref|XP_628057.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
gi|46227630|gb|EAK88565.1| small nucealr riboprotein SMD3, SM domain [Cryptosporidium parvum
Iowa II]
Length = 143
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 54/101 (53%), Gaps = 9/101 (8%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
V+IELK+G + GT+T V+ +MN L+ V T++ PV+L+ +RG+ IR+ ILPD L
Sbjct: 40 VTIELKSGDLYRGTLTHVEDNMNCMLEHVNATMRDGKPVSLEQCYLRGSQIRFCILPDML 99
Query: 75 N---LETLLVEETPRVKP------KKPTAGRPVGRGRGRGR 106
+ L R KK A R + RG RGR
Sbjct: 100 KNAPMFKLAANAKNRASVLGAAGNKKAFAARFISRGTSRGR 140
>gi|18394883|ref|NP_564119.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
gi|8886923|gb|AAF80609.1|AC069251_2 F2D10.7 [Arabidopsis thaliana]
gi|15724292|gb|AAL06539.1|AF412086_1 At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|20334748|gb|AAM16235.1| At1g20580/F2D10_6 [Arabidopsis thaliana]
gi|332191869|gb|AEE29990.1| small nuclear ribonucleoprotein-like protein [Arabidopsis thaliana]
Length = 131
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 57/105 (54%), Gaps = 2/105 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGR 108
+R+ ++PD L + R+K K + G VGRGRG RG+
Sbjct: 69 KVRFMVIPDILKHAPMFKRLDARIKGKSSSLG--VGRGRGAMRGK 111
>gi|351721470|ref|NP_001237722.1| uncharacterized protein LOC100305856 [Glycine max]
gi|356525557|ref|XP_003531391.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Glycine max]
gi|255626793|gb|ACU13741.1| unknown [Glycine max]
Length = 131
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELK+G + G++ + + N L+++ T K L+H+ +RG+
Sbjct: 9 VKLLHEASGHVVTVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+R+ ++PD L + R+K K + G VGRGR R + + GRG
Sbjct: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKGASLG--VGRGRAVAMRAKAQAAGRG 119
>gi|281201849|gb|EFA76057.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 351
Score = 61.6 bits (148), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/111 (29%), Positives = 58/111 (52%), Gaps = 10/111 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + ++ +++EL+NG + GT+ + +MN ++ + +T K ++ + +RG+
Sbjct: 76 VKILHEADSHVITLELRNGDLYRGTLIESEDNMNCRMENITMTAKNGKQTQIEQIYIRGS 135
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
IR++ILPD L + K GR V RG+ G GR GR R
Sbjct: 136 KIRFFILPDMLKNAPMF----------KRIDGRTVLRGKSLGIGRSVGRAR 176
>gi|224065689|ref|XP_002301922.1| predicted protein [Populus trichocarpa]
gi|222843648|gb|EEE81195.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 60/113 (53%), Gaps = 5/113 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELK+G + G++ + + N L+++ T K L+H+ +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+R+ ++PD L + R+K K + G VGRGR R + + GRG
Sbjct: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSASLG--VGRGRSVAMRSKAQATGRG 119
>gi|449512675|ref|XP_004164112.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + VS+ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+R+ ++PD L + R+K K + G VGRGR R + + GRG
Sbjct: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKGASLG--VGRGRAVAMRAKAQAAGRG 119
>gi|85690979|ref|XP_965889.1| small nuclear ribonucleoprotein [Encephalitozoon cuniculi GB-M1]
gi|19068456|emb|CAD24924.1| SMALL NUCLEAR RIBONUCLEOPROTEIN (U1/U2 snRNP) [Encephalitozoon
cuniculi GB-M1]
gi|449329851|gb|AGE96120.1| small nuclear ribonucleoprotein [Encephalitozoon cuniculi]
Length = 99
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 56/103 (54%), Gaps = 5/103 (4%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKLVR L K NE V IE K G + G I VD +MN + V + + G P + +V
Sbjct: 1 MKLVRVLRKCKNERVKIETKEGRRIEGKIVSVDKTMNVEM--VDVVVDG-APAS--TYTV 55
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
RG++IRY + D ++ + LLV++ PR + + G+ R G
Sbjct: 56 RGSSIRYVLFRDDIDFKPLLVDDRPRNRARGQETGKAKRRKTG 98
>gi|401825101|ref|XP_003886646.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
gi|395459791|gb|AFM97665.1| small nuclear ribonucleoprotein [Encephalitozoon hellem ATCC
50504]
Length = 99
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 54/96 (56%), Gaps = 6/96 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
MKL+RFL K E V++E K G V G I VD +MN ++ + P +V
Sbjct: 1 MKLIRFLRKCKGEKVNVETKEGRKVGGKIVSVDKTMNVEIED---AMVDGEPAG--TYTV 55
Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPK-KPTAG 95
RG++IRY + D + + LLV++ PR +PK + T+G
Sbjct: 56 RGSSIRYIMFRDDICFKPLLVDDRPRSRPKDQDTSG 91
>gi|157876267|ref|XP_001686492.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|398022728|ref|XP_003864526.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
gi|68129566|emb|CAJ08109.1| putative small nuclear ribonucleoprotein [Leishmania major strain
Friedlin]
gi|322502761|emb|CBZ37844.1| small nuclear ribonucleoprotein, putative [Leishmania donovani]
Length = 113
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
VSIE+ G + HGT+ + +MN LK T +G +D + VRG+NI ++ LPD+L
Sbjct: 18 VSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVRGSNIVFFQLPDAL 77
Query: 75 NLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
L+ V K T RG G+G G R R R
Sbjct: 78 QTSPALLRAGEVVSKAKDT------RGDGKGFGASRKRAR 111
>gi|401428927|ref|XP_003878946.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495195|emb|CBZ30499.1| putative small nuclear ribonucleoprotein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 113
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
VSIE+ G + HGT+ + +MN LK T +G +D + VRG+NI ++ LPD+L
Sbjct: 18 VSIEVATGEVYHGTVEELQNNMNVLLKNATKTARGGKETKMDSVFVRGSNIVFFQLPDAL 77
Query: 75 NLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
L+ V K T RG G+G G R R R
Sbjct: 78 QTSPALLRAGEVVSKAKDT------RGDGKGFGASRKRAR 111
>gi|357519697|ref|XP_003630137.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|355524159|gb|AET04613.1| Small nuclear ribonucleoprotein Sm D3 [Medicago truncatula]
gi|388503694|gb|AFK39913.1| unknown [Medicago truncatula]
Length = 131
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELK+G + G + + + N L+++ T K L+H+ +RG+
Sbjct: 9 VKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+R+ ++PD L + R+K K + G VGRGR R + + GRG
Sbjct: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKGASLG--VGRGRAVAMRAKAQAAGRG 119
>gi|297845022|ref|XP_002890392.1| hypothetical protein ARALYDRAFT_335306 [Arabidopsis lyrata subsp.
lyrata]
gi|297336234|gb|EFH66651.1| hypothetical protein ARALYDRAFT_335306 [Arabidopsis lyrata subsp.
lyrata]
Length = 142
Score = 60.5 bits (145), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGR 108
+R+ ++PD L + R+K K + G VGRGR RG+
Sbjct: 69 KVRFMVIPDILKHAPMFKRLDARIKGKSSSLG--VGRGRAAMRGK 111
>gi|21555384|gb|AAM63846.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
Length = 131
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGR 108
+R+ ++PD L + R+K K + G VGRGR RG+
Sbjct: 69 KVRFMVIPDILKHAPMFKRLDARIKGKSSSLG--VGRGRAAMRGK 111
>gi|224083270|ref|XP_002306975.1| predicted protein [Populus trichocarpa]
gi|222856424|gb|EEE93971.1| predicted protein [Populus trichocarpa]
Length = 132
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELK+G + G + + + N L+++ T K L+H+ +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGGMVECEDNWNCQLESITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+R+ ++PD L + R+K K + G VGRGR R + + GRG
Sbjct: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSASLG--VGRGRSVAMRSKAQAAGRG 119
>gi|146099718|ref|XP_001468724.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
gi|134073092|emb|CAM71812.1| putative small nuclear ribonucleoprotein [Leishmania infantum
JPCM5]
Length = 113
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
VSIE+ G + HGT+ + +MN LK T +G +D + VRG+NI ++ LPD+L
Sbjct: 18 VSIEVATGEVYHGTVEELQNNMNVLLKDATKTARGGKETKMDSVFVRGSNIVFFQLPDAL 77
Query: 75 NLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
L+ V + T RG G+G G R R R
Sbjct: 78 QTSPALLRAGEVVSKAQDT------RGDGKGFGASRKRAR 111
>gi|388516583|gb|AFK46353.1| unknown [Lotus japonicus]
Length = 132
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + VS+ELK+G + G++ + + N L+++ T K L+H+ +RG+
Sbjct: 9 VKLLHESSGHIVSVELKSGELYRGSMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
+R+ ++PD L + RVK K + G VGRGR
Sbjct: 69 KVRFMVIPDMLKNAPMFKRLDARVKGKGASLG--VGRGRA 106
>gi|255539216|ref|XP_002510673.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
gi|223551374|gb|EEF52860.1| small nuclear ribonucleoprotein, putative [Ricinus communis]
Length = 131
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 5/113 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + G++ + + N L+++ T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHIVTVELKSGELYRGSMVECEDNWNCQLESITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+R+ ++PD L + R+K K + G VGRGR R + + GR
Sbjct: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKSASLG--VGRGRSVAMRAKAQAAGRA 119
>gi|388502716|gb|AFK39424.1| unknown [Lotus japonicus]
Length = 133
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELK+G + G + + + N L+++ T K L+H+ +RG+
Sbjct: 11 VKLLHEASGHVVTVELKSGELYRGNMIECEDNWNCQLESITYTAKDGKTSQLEHVFIRGS 70
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+R+ ++PD L + ++K K + G VGRGR R + + GRG
Sbjct: 71 KVRFMVIPDMLKNAPMFKRLDAKIKGKGASLG--VGRGRAVAMRAKAQSAGRG 121
>gi|209881474|ref|XP_002142175.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557781|gb|EEA07826.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 126
Score = 58.9 bits (141), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+SIE+K+G + GT+ V+ +MN L TV +T+K P+ L+ +RG+ IR++ILPD L
Sbjct: 18 ISIEMKSGDLYRGTLAHVEDNMNCMLDTVNVTMKDGRPLALEQCYLRGSQIRFFILPDML 77
>gi|449455595|ref|XP_004145538.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cucumis
sativus]
Length = 132
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 57/113 (50%), Gaps = 5/113 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + VS+ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVSVELKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+ + ++PD L + R+K K + G VGRGR R + + GRG
Sbjct: 69 KVSFMVIPDMLKNAPMFKRLDARIKGKGASLG--VGRGRAVAMRAKAQAAGRG 119
>gi|154299390|ref|XP_001550114.1| hypothetical protein BC1G_10957 [Botryotinia fuckeliana B05.10]
Length = 117
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 59/113 (52%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ G + G + G + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHVVTLEITTGQVYRGKLLGAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD ++ P + + T GR VG RGR R R GRG
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRN-TRGRGVGLARGRATVSRARASGRG 113
>gi|154336783|ref|XP_001564627.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061662|emb|CAM38693.1| putative small nuclear ribonucleoprotein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 113
Score = 58.2 bits (139), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 49/100 (49%), Gaps = 6/100 (6%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
VSIE+ G + HG + + +MN LK T +G +D + VRG+NI ++ LPD+L
Sbjct: 18 VSIEVATGEVYHGIVEELQNNMNVLLKNATKTTRGGKETKMDSVFVRGSNIVFFQLPDAL 77
Query: 75 NLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
L+ V K T RG G+G G R R R
Sbjct: 78 QTSPALLRAGEIVSKAKDT------RGDGKGFGASRKRAR 111
>gi|414865765|tpg|DAA44322.1| TPA: hypothetical protein ZEAMMB73_746512 [Zea mays]
Length = 126
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+R+ I+PD L + R++ K G +G GRGR
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGK----GSAIGVGRGRA 106
>gi|223975955|gb|ACN32165.1| unknown [Zea mays]
gi|413935154|gb|AFW69705.1| hypothetical protein ZEAMMB73_559735 [Zea mays]
Length = 125
Score = 57.0 bits (136), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+R+ I+PD L + R++ K G VG GRGR
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGK----GSAVGVGRGRA 106
>gi|195656155|gb|ACG47545.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+R+ I+PD L + R++ K G +G GRGR
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGK----GSAIGVGRGRA 106
>gi|116780936|gb|ABK21888.1| unknown [Picea sitchensis]
Length = 133
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 56/113 (49%), Gaps = 5/113 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + G + + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLEGITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRG 113
+R+ ++PD L + R+K K + G VGRGR R R + GR
Sbjct: 69 KVRFMVIPDMLRNAPMFRRLDARIKGKGSSIG--VGRGRAVAMRARAQATGRA 119
>gi|239613701|gb|EEQ90688.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ER-3]
Length = 123
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 59/113 (52%), Gaps = 4/113 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + P + + GR VG RGR R RG+ RG
Sbjct: 72 HVRFFIVPDMLRYGINITPNAPMFRSRGQR-GRGVGLARGRATVNRARGQRRG 123
>gi|357145745|ref|XP_003573751.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Brachypodium
distachyon]
Length = 134
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G++ + + N ++ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMIECEDNWNCQIENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+R+ I+PD L + R++ K G +G GRGR
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGK----GSAIGVGRGRA 106
>gi|148691045|gb|EDL22992.1| mCG14669, isoform CRA_a [Mus musculus]
Length = 98
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 40/60 (66%), Gaps = 5/60 (8%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTIT----GVDISMNTHLKTVKLTLKGKNPVNLD 56
MKLVRFLMKL++ETV+IELKNGT VHGTIT + I N + + ++ P N++
Sbjct: 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITEARREIWIPWNMEIW-IPWNMEIWTPWNME 59
>gi|353236668|emb|CCA68658.1| related to small nuclear ribonucleoprotein sm d3 [Piriformospora
indica DSM 11827]
Length = 129
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + S+N LK + +T + LD + +RG+
Sbjct: 9 VKLLHEALGHVITVELKTGQLYRGKLAEAEDSLNISLKDITVTGRDGRISQLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
IR++I+PD +++ P K P A R GRG G RGR
Sbjct: 69 MIRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRA 105
>gi|347841024|emb|CCD55596.1| hypothetical protein [Botryotinia fuckeliana]
Length = 117
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHVVTLEITTGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD ++ P + + T GR VG RGR R R GRG
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRN-TRGRGVGLARGRATVSRARASGRG 113
>gi|403373657|gb|EJY86747.1| Small nuclear ribonucleoprotein [Oxytricha trifallax]
Length = 692
Score = 55.5 bits (132), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + N +++ELK+G + G + + +MN L V +T K +LD + VRG+
Sbjct: 7 IKLLHEAENHVITVELKSGELYRGYLMEAEDTMNMRLDDVYVTGKDGRQYHLDQVFVRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+R+ I+PD L + + K K + +GRGRG
Sbjct: 67 QVRFIIIPDMLKNSPMFKRIANQAKKGKNAL---LAKGRGRG 105
>gi|139948936|ref|NP_001077250.1| U7 snRNA-associated Sm-like protein LSm10 [Bos taurus]
gi|426215182|ref|XP_004001853.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Ovis aries]
gi|134024772|gb|AAI34670.1| LSM10 protein [Bos taurus]
gi|296488939|tpg|DAA31052.1| TPA: LSM10, U7 small nuclear RNA associated [Bos taurus]
gi|440908593|gb|ELR58596.1| U7 snRNA-associated Sm-like protein LSm10 [Bos grunniens mutus]
Length = 122
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 4/103 (3%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L+ L L + +++L++ ++ HG I VD MN L V T + + V LD L V
Sbjct: 16 SLIILLQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRLAQVTYTDRWGHQVELDDLFVT 75
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
G N+RY +PD++N+ T +E+ +V + G +G+GR
Sbjct: 76 GRNVRYVHIPDNVNI-TATIEQQLQVIHRVRYFG---SKGQGR 114
>gi|332248350|ref|XP_003273327.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Nomascus
leucogenys]
Length = 123
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L +++L++ ++ HG I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVELDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TSTIEQQLQIIHRVRNFG---GKGQGR 114
>gi|351714204|gb|EHB17123.1| U7 snRNA-associated Sm-like protein LSm10 [Heterocephalus glaber]
Length = 123
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L + S++L++ ++ HG I VD MN L V T + + V LD L + G
Sbjct: 17 LIILLQGLQGQVTSVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFITG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ ++ + G +G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TATIEQQLQIIHRVRNFG---SKGQGR 114
>gi|426328967|ref|XP_004025517.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Gorilla
gorilla gorilla]
Length = 123
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L+ L L +++L++ ++ HG I VD MN L V T + + V LD L V
Sbjct: 16 SLIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLANVTYTDRWGHQVKLDDLFVT 75
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
G N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 76 GRNVRYVHIPDDVNI-TSTIEQQLQIIHRVRNFG---GKGQGR 114
>gi|403293073|ref|XP_003937547.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Saimiri
boliviensis boliviensis]
Length = 123
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L +++L++ ++ HG I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAEVTYTDRWGHQVKLDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TSTIEQQLQIIHRVRNFG---GKGQGR 114
>gi|297665481|ref|XP_002811089.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 1
[Pongo abelii]
Length = 123
Score = 55.1 bits (131), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L +++L++ ++ HG I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TSTIEQQLQIIHRVRNFG---GKGQGR 114
>gi|393244822|gb|EJD52333.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 126
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + S+N LK + +T + LD + +RG+
Sbjct: 9 VKLLHEAMGHIITVELKTGQLYRGKLLEAEDSLNISLKDITVTGRDGRVSQLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
IR++I+PD +++ P K P A R GRG G RGR
Sbjct: 69 MIRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRA 105
>gi|328866082|gb|EGG14468.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 170
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 43/71 (60%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + ++ V+IELKNG + GT+ + +MN LK V +T + L+ + +RG+
Sbjct: 7 VKILHEADSHIVTIELKNGEMYRGTLMQSEDNMNCKLKIVTMTARDGKQSQLEQIYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFIILPDIL 77
>gi|164661203|ref|XP_001731724.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
gi|159105625|gb|EDP44510.1| hypothetical protein MGL_0992 [Malassezia globosa CBS 7966]
Length = 126
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + TV+IELK G G + + + N +K + +T + +LD + +RGN
Sbjct: 8 VKLLHEGLGHTVTIELKGGATYRGRLFDAEDNFNISMKDIAVTARDGKQTHLDSVYIRGN 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA--GRPVGRGRGR 104
IR+ ++PD ++++ P K P A GR +G RGR
Sbjct: 68 MIRFMVVPD-------MLQQAPMFKRVGPNAMKGRGIGSARGR 103
>gi|392594010|gb|EIW83335.1| Sm-like ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 125
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 8 VKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTARDGRVSQLDQVYIRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG--------RGRG 113
IR++I+PD +++ P K P A R GRG G RGR RGRG
Sbjct: 68 MIRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRATIMRANARRGRG 116
>gi|383872886|ref|NP_001244887.1| U7 snRNA-associated Sm-like protein LSm10 [Macaca mulatta]
gi|402853951|ref|XP_003891651.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Papio anubis]
gi|355557828|gb|EHH14608.1| hypothetical protein EGK_00564 [Macaca mulatta]
gi|355745143|gb|EHH49768.1| hypothetical protein EGM_00483 [Macaca fascicularis]
gi|380817368|gb|AFE80558.1| U7 snRNA-associated Sm-like protein LSm10 [Macaca mulatta]
gi|383422299|gb|AFH34363.1| U7 snRNA-associated Sm-like protein LSm10 [Macaca mulatta]
Length = 123
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L +++L++ ++ HG I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TSTIEQQLQIIHRVRNFG---GKGQGR 114
>gi|14249632|ref|NP_116270.1| U7 snRNA-associated Sm-like protein LSm10 [Homo sapiens]
gi|332808451|ref|XP_513319.2| PREDICTED: LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|397482876|ref|XP_003812641.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Pan paniscus]
gi|20177959|sp|Q969L4.1|LSM10_HUMAN RecName: Full=U7 snRNA-associated Sm-like protein LSm10
gi|15788234|gb|AAL07689.1|AF394685_1 U7 snRNA-associated Sm-like protein LSM10 [Homo sapiens]
gi|14043264|gb|AAH07623.1| LSM10, U7 small nuclear RNA associated [Homo sapiens]
gi|119627772|gb|EAX07367.1| LSM10, U7 small nuclear RNA associated [Homo sapiens]
gi|307683145|dbj|BAJ21189.1| LSM10, U7 small nuclear RNA associated [synthetic construct]
gi|410214430|gb|JAA04434.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|410259918|gb|JAA17925.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|410291414|gb|JAA24307.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
gi|410328355|gb|JAA33124.1| LSM10, U7 small nuclear RNA associated [Pan troglodytes]
Length = 123
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L +++L++ ++ HG I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TSTIEQQLQIIHRVRNFG---GKGQGR 114
>gi|393217444|gb|EJD02933.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 126
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 17/119 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + S+N LK + +T + LD + +RG+
Sbjct: 9 VKLLHESLGHVITVELKTGQLYRGKLAEAEDSLNISLKDITVTGRDGRVSQLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG--------RGRGR 114
+R++I+PD +++ P K P A R GRG G RGR RGRG+
Sbjct: 69 MVRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRATIMRANARRGRGQ 118
>gi|159480580|ref|XP_001698360.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
gi|158282100|gb|EDP07853.1| small nuclear ribonucleoprotein [Chlamydomonas reinhardtii]
Length = 127
Score = 54.7 bits (130), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 45/87 (51%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + G + + +MN LK V T + L HL +RG+
Sbjct: 12 VKLLHEAEGHVVTVELKSGEMYRGELCDAEDNMNCQLKDVTATGRDGRVTQLAHLFIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK 90
+R++I+PD L + P+ K K
Sbjct: 72 RVRFFIIPDMLKNAPMFKRIDPKFKNK 98
>gi|449016061|dbj|BAM79463.1| Sm protein D1 [Cyanidioschyzon merolae strain 10D]
Length = 134
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 57/130 (43%), Gaps = 43/130 (33%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS--- 59
L+ FL +L TV++ELK+GT GT+ VD MN +L +T GK P L S
Sbjct: 4 LLYFLTRLRGATVTVELKDGTKATGTVQRVDNEMNVYLLNASVT--GKPPAELPSASLET 61
Query: 60 -----------------------------------VRGNNIRYYILPDSLNLETLLVEE- 83
+RG+ +RY ILP+SLNLE+ L E
Sbjct: 62 HAAQVVAPWTERFSEPDASAMSRRNQPQQKAREYRIRGSTVRYIILPESLNLESALKETR 121
Query: 84 --TPRVKPKK 91
+PR + +K
Sbjct: 122 KFSPRTRYQK 131
>gi|443711594|gb|ELU05300.1| hypothetical protein CAPTEDRAFT_181174 [Capitella teleta]
Length = 144
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLT-LKGKNPVNLDHLSVRGNNIRYYILPD 72
+IEL+N + GTI VDI MN L T+ T K LD L V+G NIRY +PD
Sbjct: 27 CTTIELRNDDSILGTIDHVDIQMNVFLSTITFTRAKTGQQSQLDKLYVQGKNIRYVHIPD 86
Query: 73 SLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGR 108
+++ + + K + + + R R + R
Sbjct: 87 DMDMMACIEGQVSLAKTIRDHKDKRKPKARSRAQCR 122
>gi|149694668|ref|XP_001499097.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Equus
caballus]
Length = 123
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ +V + G G+G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TATIEQQLQVIHRVRNFG---GKGQGR 114
>gi|440790083|gb|ELR11371.1| LSM domain containing protein [Acanthamoeba castellanii str. Neff]
Length = 136
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 11/104 (10%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ + TV+IELK G + G + + +MN + ++ T + NL+ + +RG+
Sbjct: 7 IKVFHEAKGHTVTIELKTGEVYRGQLGDTEDNMNCQMANIQYTARDGRVTNLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRG 107
IR+ ILPD L + V PKK +GRG+G G
Sbjct: 67 KIRFMILPDMLKNAPMFRN----VDPKK-------AQGRGKGAG 99
>gi|440634941|gb|ELR04860.1| small nuclear ribonucleoprotein D3 [Geomyces destructans 20631-21]
Length = 117
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD ++ P + + GR VG RGR R R GRG
Sbjct: 69 HVRFFIVPD-------MLRNAPMFR-SRGVKGRGVGLARGRATVSRARASGRG 113
>gi|15223010|ref|NP_177757.1| snRNP core protein SMD3 [Arabidopsis thaliana]
gi|6554488|gb|AAF16670.1|AC012394_19 putative small nuclear ribonucleoprotein Sm D3; 79504-78381
[Arabidopsis thaliana]
gi|6573711|gb|AAF17631.1|AC009978_7 T23E18.23 [Arabidopsis thaliana]
gi|14190503|gb|AAK55732.1|AF380651_1 At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|15809764|gb|AAL06810.1| At1g76300/F15M4_20 [Arabidopsis thaliana]
gi|21592857|gb|AAM64807.1| small nuclear ribonucleoprotein, putative [Arabidopsis thaliana]
gi|332197701|gb|AEE35822.1| snRNP core protein SMD3 [Arabidopsis thaliana]
Length = 128
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + VS+E+K+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
+R+ ++PD L + + V+ K +A VGRGRG
Sbjct: 69 LVRFLVIPDMLKNAPMFKD----VRGKGKSASLGVGRGRG 104
>gi|33337945|gb|AAQ13594.1|AF166092_1 MSTP074 [Homo sapiens]
Length = 123
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L +++L++ ++ HG I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 77 PNVRYVHIPDDVNI-TSTIEQQLQIIHRVRNFG---GKGQGR 114
>gi|110758613|ref|XP_001120143.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Apis mellifera]
gi|380017261|ref|XP_003692578.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Apis florea]
gi|380017263|ref|XP_003692579.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 2
[Apis florea]
Length = 142
Score = 53.5 bits (127), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 61/122 (50%), Gaps = 21/122 (17%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + T++ E G + G + + +MN ++ + +T + + V L+++ +RG+
Sbjct: 7 IKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGHEVQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKP------TAGR---PVGRGRGRGRGRG---RG 111
IR+ ILPD L + K+P TAGR + R + RGRGRG RG
Sbjct: 67 KIRFLILPDMLKNAPMF---------KRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRG 117
Query: 112 RG 113
RG
Sbjct: 118 RG 119
>gi|295658451|ref|XP_002789786.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|225682914|gb|EEH21198.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
gi|226282930|gb|EEH38496.1| conserved hypothetical protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226290365|gb|EEH45849.1| small nuclear ribonucleoprotein Sm D3 [Paracoccidioides
brasiliensis Pb18]
gi|327350126|gb|EGE78983.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
ATCC 18188]
Length = 116
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + R GR VG RGR R RG+ RG
Sbjct: 72 HVRFFIVPDMLRNAPMFRSRGQR--------GRGVGLARGRATVNRARGQRRG 116
>gi|169846820|ref|XP_001830124.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
gi|116508894|gb|EAU91789.1| small nuclear ribonucleoprotein Sm D3 [Coprinopsis cinerea
okayama7#130]
Length = 126
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 58/116 (50%), Gaps = 15/116 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG------RGRG 113
IR++I+PD +++ P K P A R GRG G RGR RGRG
Sbjct: 70 MIRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRATIMRARRGRG 116
>gi|148909638|gb|ABR17910.1| unknown [Picea sitchensis]
Length = 133
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 2/100 (2%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + G + + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLEGITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
+R+ ++PD L + R+K + + G VGRGR
Sbjct: 69 KVRFMVIPDMLRNAPMFRRLDARIKGRGSSLG--VGRGRA 106
>gi|395333040|gb|EJF65418.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 128
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 12/116 (10%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 10 VKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDGRVSQLDQVYIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA--GRPVGRGRGRG---RGRGRGRGR 114
+R++I+PD +++ P K P A GR +G RGR RG RGR
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMRGRGIGTARGRATIMRGASSRRGR 118
>gi|340904841|gb|EGS17209.1| small nuclear ribonucleoprotein smD3-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 114
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 11/114 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++EL G G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLELTTGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQIYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRGR 114
++R++I+PD ++ P + + GR VG RGR R R GRGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRN-VRGRGVGLARGRATVSRARASGRGR 114
>gi|224082027|ref|XP_002198423.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L ++EL++ + G +T VD MN L V T + LD L V G
Sbjct: 17 LVILLQGLRGRVTTVELRDESAAAGRVTSVDAFMNVRLAEVTFTDRQGAVSQLDELFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGR 100
NIRY +PD +++ + E+ + + GR GR
Sbjct: 77 RNIRYVHIPDEVDIRATIEEQLQAIHRVRYFGGRDKGR 114
>gi|302909812|ref|XP_003050156.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
gi|256731093|gb|EEU44443.1| hypothetical protein NECHADRAFT_84991 [Nectria haematococca mpVI
77-13-4]
Length = 384
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +LD + +RG+
Sbjct: 279 IKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 338
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRGR 114
++R++I+PD L + R GR VG RGR R R GRGR
Sbjct: 339 HVRFFIVPDMLRNAPMFRSRNVR--------GRGVGLARGRATVSRARAGGRGR 384
>gi|410966946|ref|XP_003989986.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Felis catus]
Length = 244
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V
Sbjct: 137 SLIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVT 196
Query: 62 GNNIRYYILPDSLNLETLLVEE 83
G N+RY +PD +N+ + ++
Sbjct: 197 GRNVRYVHIPDDVNITATIEQQ 218
>gi|45200940|ref|NP_986510.1| AGL157Cp [Ashbya gossypii ATCC 10895]
gi|44985710|gb|AAS54334.1| AGL157Cp [Ashbya gossypii ATCC 10895]
gi|374109756|gb|AEY98661.1| FAGL157Cp [Ashbya gossypii FDAG1]
Length = 102
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + TVS+EL G G + G + +MN L+ V T + ++DH+ VRG+
Sbjct: 8 VKLLNEAQGHTVSLELTTGETYRGKLVGSEDNMNCQLRDVTATARNGQVTHMDHVFVRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPR 86
++R++++PD L E+
Sbjct: 68 HVRFFVVPDMFKNAPLFKSESAH 90
>gi|348571487|ref|XP_003471527.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like [Cavia
porcellus]
Length = 123
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L + +++L++ ++ HG I VD MN L V T + + V LD L + G
Sbjct: 17 LIILLQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRRGHQVELDDLFITG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ ++ + G +G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TATIEQQLQIIHRVRNFG---SKGQGR 114
>gi|255948872|ref|XP_002565203.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211592220|emb|CAP98547.1| Pc22g12590 [Penicillium chrysogenum Wisconsin 54-1255]
gi|425774880|gb|EKV13173.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum PHI26]
gi|425780976|gb|EKV18959.1| Small nuclear ribonucleoprotein SmD3, putative [Penicillium
digitatum Pd1]
Length = 117
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 12/114 (10%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+IE+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTIEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRG-RGRG 113
++R++I+PD L + R GR VG RG+ R RG RGRG
Sbjct: 72 HVRFFIVPDMLRNAPMFRTRGQR--------GRGVGLARGKATVQRARGQRGRG 117
>gi|326428962|gb|EGD74532.1| small nuclear ribonucleoprotein Sm D3 [Salpingoeca sp. ATCC
50818]
Length = 128
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ + + T++IELKNG + G + + +MN+ ++ V T + LD + +RG+
Sbjct: 8 VKLMHEAEGHTITIELKNGEMYRGKLIEAEDNMNSQMRDVTFTARDGQVTQLDTVYIRGS 67
Query: 64 NIRYYILPDSL 74
I++++LPD L
Sbjct: 68 KIKFFVLPDML 78
>gi|388854781|emb|CCF51674.1| related to small nuclear ribonucleoprotein sm d3 [Ustilago hordei]
Length = 134
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ + + +++ELK G GT+ + S N +K V T +L+++ +RGN
Sbjct: 8 VKLIHEAVGHVITVELKGGACYRGTLYDAEDSFNVAMKDVTATAPDGKQSHLENIYIRGN 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA--GRPVGRGRGRG 105
+R+ I+PD ++++ P K P A GR +G RGR
Sbjct: 68 MLRFIIVPD-------MLQQAPMFKRIGPNAMKGRGIGSARGRA 104
>gi|119174174|ref|XP_001239448.1| conserved hypothetical protein [Coccidioides immitis RS]
gi|258569991|ref|XP_002543799.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|303314089|ref|XP_003067053.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|237904069|gb|EEP78470.1| small nuclear ribonucleoprotein SM D3 [Uncinocarpus reesii 1704]
gi|240106721|gb|EER24908.1| small nuclear ribonucleoprotein Sm D3, putative [Coccidioides
posadasii C735 delta SOWgp]
gi|320037285|gb|EFW19222.1| small nuclear ribonucleoprotein Sm D3 [Coccidioides posadasii str.
Silveira]
gi|392869636|gb|EAS28151.2| small nuclear ribonucleoprotein Sm D3 [Coccidioides immitis RS]
Length = 116
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + R GR VG RGR R RG+ RG
Sbjct: 72 HVRFFIVPDMLRNAPMFRTRGQR--------GRGVGLARGRATVNRARGQRRG 116
>gi|168011639|ref|XP_001758510.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168011861|ref|XP_001758621.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690120|gb|EDQ76488.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690231|gb|EDQ76599.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 137
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + G++ + + N+ L+++ T K L+H+ +RG+
Sbjct: 9 VKLLHEAEGHIVTVELKSGEVYRGSLIECEDNWNSQLESITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSL 74
+RY I+PD L
Sbjct: 69 KVRYMIIPDML 79
>gi|154286938|ref|XP_001544264.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407905|gb|EDN03446.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|225555382|gb|EEH03674.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus
G186AR]
gi|240273870|gb|EER37389.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325094696|gb|EGC48006.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces capsulatus H88]
Length = 116
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEILSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + R GR VG RGR R RG+ RG
Sbjct: 72 HVRFFIVPDMLRNAPMFRSRGQR--------GRGVGLARGRATVNRARGQRRG 116
>gi|431891086|gb|ELK01963.1| U7 snRNA-associated Sm-like protein LSm10 [Pteropus alecto]
Length = 123
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L + +++L++ ++ HG I VD MN L V T + + LD L V G
Sbjct: 17 LIILLQGLQGQVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQAELDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ +V + G +G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TKTIEQQLQVIHRVRNFG---SKGQGR 114
>gi|224082029|ref|XP_002198421.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Taeniopygia guttata]
Length = 123
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L ++EL++ + G +T VD MN L V T + LD L V G
Sbjct: 17 LVILLQGLRGRVTTVELRDESAAAGRVTSVDAFMNVRLAEVTFTDRRGAVSQLDELFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGR 100
NIRY +PD +++ + E+ + + GR GR
Sbjct: 77 RNIRYVHIPDEVDIRATIEEQLQAIHRVRYFGGRDKGR 114
>gi|403412007|emb|CCL98707.1| predicted protein [Fibroporia radiculosa]
Length = 127
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG--------RGRG 113
IR++I+PD +++ P K P A R GRG G RGR RGRG
Sbjct: 70 MIRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRATIMRANARRGRG 118
>gi|167524150|ref|XP_001746411.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775173|gb|EDQ88798.1| predicted protein [Monosiga brevicollis MX1]
Length = 325
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ + + V+IELKNG I G + + +MN+ L+ V T + +++ + +RG+
Sbjct: 179 IKIMHEGEGHVVTIELKNGEIYRGKLVEAEDNMNSQLRDVTFTARDGQVAHVESVYIRGS 238
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
IR+++LPD L + R K TAGR
Sbjct: 239 KIRFFVLPDMLKNAPMF----KRASAKGMTAGR 267
>gi|157822899|ref|NP_001102446.1| U7 snRNA-associated Sm-like protein LSm10 [Rattus norvegicus]
gi|149023943|gb|EDL80440.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023944|gb|EDL80441.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|149023945|gb|EDL80442.1| similar to U7 snRNP-specific Sm-like protein LSM10, isoform CRA_a
[Rattus norvegicus]
gi|187469116|gb|AAI66902.1| Lsm10 protein [Rattus norvegicus]
Length = 122
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V
Sbjct: 16 SLIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVT 75
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
G N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 76 GRNVRYVHIPDGVNI-TATIEQQLQIIHRVRNFG---GKGQGR 114
>gi|310799322|gb|EFQ34215.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 115
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + R GR VG RGR R R GRG
Sbjct: 69 HVRFFIVPDMLRNAPMFRSRNVR--------GRGVGMARGRATVSRARASGRG 113
>gi|409080651|gb|EKM81011.1| hypothetical protein AGABI1DRAFT_112714 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197565|gb|EKV47492.1| hypothetical protein AGABI2DRAFT_192678 [Agaricus bisporus var.
bisporus H97]
Length = 128
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG--------RGRG 113
IR++I+PD +++ P K P A R GRG G RGR RGRG
Sbjct: 70 MIRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRATIMRANARRGRG 118
>gi|255718497|ref|XP_002555529.1| KLTH0G11396p [Lachancea thermotolerans]
gi|238936913|emb|CAR25092.1| KLTH0G11396p [Lachancea thermotolerans CBS 6340]
Length = 102
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 1/92 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + VS+EL G G + + +MN L+ V T + + +DH+ VRG+
Sbjct: 8 IKLLTESQGHVVSLELTTGEAYRGKLVDSEDNMNVQLRDVTATARDGSVTRMDHVFVRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+IR++++PD L + ++ P KP P G
Sbjct: 68 HIRFFVVPDILK-NAPMFKQGPTSKPPPPIRG 98
>gi|302679434|ref|XP_003029399.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
gi|300103089|gb|EFI94496.1| hypothetical protein SCHCODRAFT_16877 [Schizophyllum commune H4-8]
Length = 125
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 59/115 (51%), Gaps = 13/115 (11%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 9 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKEITVTGRDGRVSQLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA--GRPVGRGRGRG---RGRGRGRG 113
IR++I+PD +++ P K P A GR +G RGR R R RGRG
Sbjct: 69 MIRFFIVPD-------MLQNAPMFKRVGPNAMKGRGIGTARGRATIMRAR-RGRG 115
>gi|392569479|gb|EIW62652.1| small nuclear ribonucleo protein Sm D3 [Trametes versicolor
FP-101664 SS1]
Length = 131
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 53/104 (50%), Gaps = 9/104 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 10 VKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKDITVTQRDGRVSQLDQVYIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA--GRPVGRGRGRG 105
+R++I+PD +++ P K P A GR +G RGR
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMKGRGIGTARGRA 106
>gi|111226987|ref|XP_001134627.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|90971301|gb|EAS66961.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 146
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 10/106 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELKNG + GT+ + +MN +K + +T + +++ VRG+
Sbjct: 7 VKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTARDGRNSQMEYCYVRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
+R+ ILPD L + K GR V +G+ G G+G
Sbjct: 67 KVRFIILPDILKNAPMF----------KRIDGRVVLKGKALGIGKG 102
>gi|358254548|dbj|GAA55787.1| small nuclear ribonucleoprotein D3 [Clonorchis sinensis]
Length = 715
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L +++E NG + G + + +MN + + LT + NL + +RG+
Sbjct: 7 IKVLHDAEGHVITLETVNGEVFRGKLVEAEDNMNIQMADIILTARDGRTSNLQQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
IR+ ILPD L +L K+P + +G GRG+
Sbjct: 67 KIRFLILPDMLKNSPML---------KRPLGAKGLGTGRGK 98
>gi|115492327|ref|XP_001210791.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|169771623|ref|XP_001820281.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae RIB40]
gi|238485796|ref|XP_002374136.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|83768140|dbj|BAE58279.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|114197651|gb|EAU39351.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus terreus NIH2624]
gi|220699015|gb|EED55354.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus flavus
NRRL3357]
gi|391871729|gb|EIT80886.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus oryzae 3.042]
Length = 116
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + R GR VG RG+ R RG+ RG
Sbjct: 72 HVRFFIVPDMLRNAPMFRSRGQR--------GRGVGLARGKATVQRARGQRRG 116
>gi|291408786|ref|XP_002720696.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Oryctolagus
cuniculus]
Length = 123
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L +++L++ ++ HG I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGRETTVDLRDESVAHGRIDNVDAFMNIRLTKVTYTDRWGHQVQLDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGR 102
N+RY +PD +N+ T +E+ ++ + G G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TATIEQQLQLIHRVRNFG-STGKGR 114
>gi|449546694|gb|EMD37663.1| hypothetical protein CERSUDRAFT_123559 [Ceriporiopsis subvermispora
B]
Length = 127
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 17/116 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKEITVTQRDGRVSQLDQVYIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA--GRPVGRGRGRG--------RGRG 109
+R++I+PD +++ P K P A GR +G RGR RGRG
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMKGRGIGTARGRATIMRANARRGRG 118
>gi|389741899|gb|EIM83087.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 126
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 9 VKLLHESLGHVITVELKTGQLYRGKLAEAEDNLNISLKEITVTGRDGRISQLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG--------RGRG 113
+R++I+PD +++ P K P A R GRG G RGR RGRG
Sbjct: 69 MVRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRATIMRANARRGRG 117
>gi|336363219|gb|EGN91635.1| hypothetical protein SERLA73DRAFT_192176 [Serpula lacrymans var.
lacrymans S7.3]
gi|336384161|gb|EGO25309.1| hypothetical protein SERLADRAFT_465253 [Serpula lacrymans var.
lacrymans S7.9]
Length = 127
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG--------RGRG 113
+R++I+PD +++ P K P A R GRG G RGR RGRG
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRATIMRANARRGRG 118
>gi|170087186|ref|XP_001874816.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650016|gb|EDR14257.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 127
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 9 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG--------RGRG 113
+R++I+PD +++ P K P A R GRG G RGR RGRG
Sbjct: 69 MVRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRATIMRANARRGRG 117
>gi|57096594|ref|XP_532561.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Canis lupus
familiaris]
Length = 123
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 53/102 (51%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E+ +V + G +G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TATIEQQLQVIHRVRNFG---SKGQGR 114
>gi|355700134|gb|AES01351.1| LSM10, U7 small nuclear RNA associated [Mustela putorius furo]
Length = 122
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V
Sbjct: 16 SLIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVT 75
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
G N+RY +PD +N+ T +E+ +V + G +G+GR
Sbjct: 76 GRNVRYVHIPDDVNI-TATIEQQLQVIHRVRNFG---SKGQGR 114
>gi|390602523|gb|EIN11916.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 127
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 58/118 (49%), Gaps = 17/118 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N LK + +T + LD + +RG+
Sbjct: 10 VKLLHESLGHIITVELKTGQLYRGKLAEAEDNLNISLKDITVTGRDGRVSQLDQVYIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG--------RGRG 113
+R++I+PD +++ P K P A R GRG G RGR RGRG
Sbjct: 70 MVRFFIVPD-------MLQNAPMFKRVGPNAMR--GRGIGTARGRATIMRANARRGRG 118
>gi|363751767|ref|XP_003646100.1| hypothetical protein Ecym_4216 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889735|gb|AET39283.1| hypothetical protein Ecym_4216 [Eremothecium cymbalariae
DBVPG#7215]
Length = 102
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + TVS+EL G G + + +MN L+ V T + ++DH+ +RG+
Sbjct: 8 VKLLNEAQGHTVSLELTTGETYRGKLVESEDNMNCQLRDVTATARNGQVTHMDHVFIRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
++R++++PD L P KP P G
Sbjct: 68 HVRFFVVPDMFK-NAPLFNTGPVYKPPPPVRG 98
>gi|67523101|ref|XP_659611.1| hypothetical protein AN2007.2 [Aspergillus nidulans FGSC A4]
gi|40745683|gb|EAA64839.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
gi|259487374|tpe|CBF86001.1| TPA: small nuclear ribonucleoprotein SmD3, putative
(AFU_orthologue; AFUA_4G10240) [Aspergillus nidulans
FGSC A4]
Length = 116
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + R GR VG RG+ R RG+ RG
Sbjct: 72 HVRFFIVPDMLRNAPMFRTRGQR--------GRGVGLARGKATVQRARGQRRG 116
>gi|302830880|ref|XP_002947006.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
gi|300268050|gb|EFJ52232.1| small nuclear ribonucleoprotein [Volvox carteri f. nagariensis]
Length = 129
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + G + + +MN LK V T + L H+ +RG+
Sbjct: 12 VKLLHEAEGHVVTVELKSGEMYRGELFEAEDNMNVQLKDVTATGRDGRVSQLAHIFIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK 90
+R++I+PD L + P+ K K
Sbjct: 72 RVRFFIIPDMLKNAPMFKRIDPKFKNK 98
>gi|212538165|ref|XP_002149238.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|242807429|ref|XP_002484954.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
gi|210068980|gb|EEA23071.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|218715579|gb|EED15001.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 116
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + R GR VG RG+ R RG+ RG
Sbjct: 72 HVRFFIVPDMLRNAPMFRTRGQR--------GRGVGLARGKATVNRARGQRRG 116
>gi|354477407|ref|XP_003500912.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Cricetulus griseus]
gi|344245005|gb|EGW01109.1| U7 snRNA-associated Sm-like protein LSm10 [Cricetulus griseus]
Length = 122
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
LV L L + +++L++ + G I VD MN L V T + + V LD L V
Sbjct: 16 SLVILLQGLQGQITTVDLRDESSARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVT 75
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
G N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 76 GRNVRYVHIPDDVNI-TATIEQQLQIIHRVRNFG---GKGQGR 114
>gi|340729743|ref|XP_003403155.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
terrestris]
gi|350411432|ref|XP_003489349.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Bombus
impatiens]
Length = 142
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 59/122 (48%), Gaps = 21/122 (17%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + T++ E G + G + + +MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGREAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKP------TAGR---PVGRGRGRGRGRG---RG 111
IR+ ILPD L + K+P TAGR + R + RGRGRG RG
Sbjct: 67 KIRFLILPDMLKNAPMF---------KRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRG 117
Query: 112 RG 113
RG
Sbjct: 118 RG 119
>gi|367024463|ref|XP_003661516.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
gi|347008784|gb|AEO56271.1| hypothetical protein MYCTH_2301009 [Myceliophthora thermophila ATCC
42464]
Length = 114
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 11/114 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRGR 114
++R++I+PD L + R GR VG RGR R R GRGR
Sbjct: 69 HVRFFIVPDMLRNAPMFRSRNVR--------GRGVGLARGRATVSRARAGGRGR 114
>gi|407923942|gb|EKG17004.1| hypothetical protein MPH_05830 [Macrophomina phaseolina MS6]
Length = 114
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 58/114 (50%), Gaps = 11/114 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++EL G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEATGHVVTLELTTGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRGR 114
++R++I+PD ++ P + + T GR VG RGR R RG GR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFR-SRGTRGRGVGLARGRATVNRARGARGGR 114
>gi|225428263|ref|XP_002282385.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Vitis vinifera]
gi|297744494|emb|CBI37756.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 46/92 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ ++PD L + RVK K G
Sbjct: 69 KVRFMVIPDMLKNAPMFKRLDARVKGKGSALG 100
>gi|315044655|ref|XP_003171703.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|327297404|ref|XP_003233396.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|311344046|gb|EFR03249.1| small nuclear ribonucleoprotein SM D3 [Arthroderma gypseum CBS
118893]
gi|326464702|gb|EGD90155.1| small nuclear ribonucleoprotein Sm D3 [Trichophyton rubrum CBS
118892]
gi|326472436|gb|EGD96445.1| pre-mRNA splicing factor [Trichophyton tonsurans CBS 112818]
gi|326481659|gb|EGE05669.1| small nuclear ribonucleoprotein D3 polypeptide [Trichophyton
equinum CBS 127.97]
Length = 116
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
+++++I+PD L + R GR VG RGR R RG+ RG
Sbjct: 72 HVKFFIVPDMLRNAPMFRSRGQR--------GRGVGLARGRATVNRARGQRRG 116
>gi|357113192|ref|XP_003558388.1| PREDICTED: LOW QUALITY PROTEIN: small nuclear ribonucleoprotein Sm
D3-like [Brachypodium distachyon]
Length = 132
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 4/102 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + ++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRXSMLECEDNWNCQLENISFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+R+ I+PD L + R++ K G +G GRG
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGK----GSAIGVGRGHA 106
>gi|330802087|ref|XP_003289052.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
gi|325080886|gb|EGC34423.1| hypothetical protein DICPUDRAFT_79815 [Dictyostelium purpureum]
Length = 149
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELKNG + GT+ + +MN +K + +T K +++ VRG+
Sbjct: 7 VKILHEADGHIVTVELKNGELYRGTLIESEDNMNCRMKNITVTAKDGRNSQMEYCYVRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
+R+ ILPD L + K GR V +G+ G +G
Sbjct: 67 KVRFIILPDILKNAPMF----------KRIDGRVVLKGKALGISKG 102
>gi|344287217|ref|XP_003415351.1| PREDICTED: hypothetical protein LOC100665419 [Loxodonta africana]
Length = 258
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V
Sbjct: 16 SLIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVT 75
Query: 62 GNNIRYYILPDSLNLETLLVEE 83
G N+RY +PD +N+ + ++
Sbjct: 76 GRNVRYVHIPDDVNITATIEQQ 97
>gi|20270251|ref|NP_620046.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|253795523|ref|NP_001156738.1| U7 snRNA-associated Sm-like protein LSm10 [Mus musculus]
gi|52783143|sp|Q8QZX5.1|LSM10_MOUSE RecName: Full=U7 snRNA-associated Sm-like protein LSm10
gi|19354497|gb|AAH24543.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|20071449|gb|AAH26476.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
gi|74228609|dbj|BAE25378.1| unnamed protein product [Mus musculus]
gi|148698363|gb|EDL30310.1| U7 snRNP-specific Sm-like protein LSM10 [Mus musculus]
Length = 122
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V
Sbjct: 16 SLIILLQGLQGQITTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVT 75
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
G N+RY +PD +++ T +E+ ++ + G G+G+GR
Sbjct: 76 GRNVRYVHIPDGVDI-TATIEQQLQIIHRVRNFG---GKGQGR 114
>gi|71023653|ref|XP_762056.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
gi|46101621|gb|EAK86854.1| hypothetical protein UM05909.1 [Ustilago maydis 521]
Length = 850
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 29/106 (27%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ + + +++ELK G GT+ + + N +K + +T +L+++ +RGN
Sbjct: 8 VKLIHEAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHLENVYIRGN 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
+R+ I+PD ++++ P K P A + GRG G RGR
Sbjct: 68 MLRFIIVPD-------MLQQAPMFKRIGPNAMK--GRGIGSARGRA 104
>gi|384251125|gb|EIE24603.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 124
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK+G G + + S N LK V T K +L+H+ VRG+
Sbjct: 11 VKLLHEAEGHVITVELKSGETYRGELAEAEDSWNVQLKQVTATAKDGRVSHLEHIFVRGS 70
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK 90
+R+ I+PD L + P+ K K
Sbjct: 71 RVRFVIIPDMLKNAPMFKRIDPKNKAK 97
>gi|383853962|ref|XP_003702491.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Megachile
rotundata]
Length = 142
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 59/122 (48%), Gaps = 21/122 (17%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN ++ + +T + V L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGREVELENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKP------TAGR---PVGRGRGRGRGRG---RG 111
IR+ ILPD L + K+P TAGR + R + RGRGRG RG
Sbjct: 67 KIRFLILPDMLKNAPMF---------KRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRG 117
Query: 112 RG 113
RG
Sbjct: 118 RG 119
>gi|333656534|gb|AEF68170.1| Sm-D3-like protein [Physarum polycephalum]
Length = 134
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+IELK G + G + + +MN L + LT + NL+H VRG+
Sbjct: 7 IKLLHEAEGHIVTIELKTGEVYRGQLIESEDNMNCQLGNITLTARDGRISNLEHAYVRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|50290335|ref|XP_447599.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526909|emb|CAG60536.1| unnamed protein product [Candida glabrata]
Length = 133
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 13/94 (13%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKL----------TLKGK 50
+KL FL KL N+ V++EL+NG+ V+G + V N +L+ L +
Sbjct: 3 LKLTNFLRKLQNQYVTLELQNGSTVYGMVISVSPHSNVNLRDATLDRYYNSDSVYSEVTP 62
Query: 51 NPVNLDHL---SVRGNNIRYYILPDSLNLETLLV 81
P++ HL +V+ IR ILPDSL+L+++LV
Sbjct: 63 QPISTSHLKNINVKECFIRQVILPDSLDLDSILV 96
>gi|70993910|ref|XP_751802.1| small nuclear ribonucleoprotein SmD3 [Aspergillus fumigatus Af293]
gi|119500466|ref|XP_001266990.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|145258404|ref|XP_001402031.1| small nuclear ribonucleoprotein Sm D3 [Aspergillus niger CBS
513.88]
gi|66849436|gb|EAL89764.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus Af293]
gi|119415155|gb|EAW25093.1| small nuclear ribonucleoprotein SmD3, putative [Neosartorya
fischeri NRRL 181]
gi|134074637|emb|CAK44670.1| unnamed protein product [Aspergillus niger]
gi|159125281|gb|EDP50398.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
fumigatus A1163]
gi|350632459|gb|EHA20827.1| hypothetical protein ASPNIDRAFT_204683 [Aspergillus niger ATCC
1015]
gi|358370798|dbj|GAA87408.1| small nuclear ribonucleoprotein SmD3 [Aspergillus kawachii IFO
4308]
Length = 116
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
+++++I+PD L + R GR VG RG+ R RG+ RG
Sbjct: 72 HVKFFIVPDMLRNAPMFRSRGQR--------GRGVGLARGKATVQRARGQRRG 116
>gi|226505392|ref|NP_001152085.1| LOC100285722 [Zea mays]
gi|194699166|gb|ACF83667.1| unknown [Zea mays]
gi|195652485|gb|ACG45710.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413935155|gb|AFW69706.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ I+PD L + R++ K G
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGKGSAVG 100
>gi|325192510|emb|CCA26944.1| small nuclear ribonucleoprotein Sm D3 putative [Albugo laibachii
Nc14]
Length = 112
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+++ELKNG I G + + SMN L V L+ + L+ + VRG+ I++ ILP+ L
Sbjct: 20 ITVELKNGEIYRGHLEESEDSMNCQLSNVVLSARNGQKCKLEQVYVRGSQIKFIILPELL 79
Query: 75 NLETLLVEETPRVK--PKKPTAGRPVGR 100
+ L E+ +K P+K A RP R
Sbjct: 80 K-NSPLFEKVRSIKPEPEKRKAHRPKTR 106
>gi|452822235|gb|EME29256.1| small nuclear ribonucleoprotein D3 [Galdieria sulphuraria]
Length = 125
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++TV++E K+G + GT+ + +MN LK V T + +H+ +RG+
Sbjct: 7 IKLLHEAISQTVTVETKSGDLYRGTLYDAEDNMNCQLKKVTCTGRDGKITPFEHVFLRGS 66
Query: 64 NIRYYILPDSL 74
IR++I+PD L
Sbjct: 67 KIRFFIVPDIL 77
>gi|296810002|ref|XP_002845339.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
gi|238842727|gb|EEQ32389.1| small nuclear ribonucleoprotein SM D3 [Arthroderma otae CBS 113480]
Length = 116
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVITLEITSGHVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
+++++I+PD L + R GR VG RGR R RG+ RG
Sbjct: 72 HVKFFIVPDMLRNAPMFRSRGQR--------GRGVGLARGRATVNRARGQRRG 116
>gi|444706872|gb|ELW48189.1| U7 snRNA-associated Sm-like protein LSm10 [Tupaia chinensis]
Length = 156
Score = 51.2 bits (121), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 4/103 (3%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L+ L L +++L++ ++ G I VD MN L V T + + V LD L V
Sbjct: 49 SLIILLQGLQGLVTTVDLRDESVARGRIDNVDAFMNIRLAQVTYTDRWGHQVKLDDLFVT 108
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
G N+RY +PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 109 GRNVRYVHIPDDVNI-TSTIEQQLQIIHRVRNFG---GKGQGR 147
>gi|451851728|gb|EMD65026.1| hypothetical protein COCSADRAFT_36375 [Cochliobolus sativus ND90Pr]
gi|451995470|gb|EMD87938.1| hypothetical protein COCHEDRAFT_1183070 [Cochliobolus
heterostrophus C5]
Length = 116
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAAGHIVTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++RY+I+PD ++ P + + T GR VG RGR R R RG
Sbjct: 69 HVRYFIVPD-------MLRNAPMFR-SRGTRGRGVGLARGRATVNRARASTRG 113
>gi|189199034|ref|XP_001935854.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330913493|ref|XP_003296291.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
gi|187982953|gb|EDU48441.1| small nuclear ribonucleoprotein Sm D3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311331686|gb|EFQ95612.1| hypothetical protein PTT_05811 [Pyrenophora teres f. teres 0-1]
Length = 118
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAAGHIVTLEITSGEVYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++RY+I+PD ++ P + + T GR VG RGR R R RG
Sbjct: 69 HVRYFIVPD-------MLRNAPMFR-SRGTRGRGVGLARGRATVNRARASTRG 113
>gi|345560308|gb|EGX43433.1| hypothetical protein AOL_s00215g169 [Arthrobotrys oligospora ATCC
24927]
Length = 123
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++EL +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 8 LKLLGESQGHVVTLELTSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
++R++I+PD L + R GR VG RGR
Sbjct: 68 HVRFFIVPDMLRNAPMFRSRAVR--------GRGVGMARGRA 101
>gi|367037323|ref|XP_003649042.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
gi|346996303|gb|AEO62706.1| hypothetical protein THITE_57872, partial [Thielavia terrestris
NRRL 8126]
Length = 114
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 57/113 (50%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD ++ P + + GR VG RGR R R GRG
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRN-VRGRGVGLARGRATVSRARASGRG 113
>gi|195658123|gb|ACG48529.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ I+PD L + R++ K G
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGKGSAIG 100
>gi|384497430|gb|EIE87921.1| hypothetical protein RO3G_12632 [Rhizopus delemar RA 99-880]
Length = 129
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +S+ELK G + G + + +MN LK + +T + LD + +RG+
Sbjct: 7 IKLLHEAQGHIISLELKTGQLYRGKLLEAEDNMNIQLKDITVTARDGRVSQLDQVYIRGS 66
Query: 64 NIRYYILPDSL 74
++R++I+PD L
Sbjct: 67 HVRFFIVPDML 77
>gi|392577030|gb|EIW70160.1| hypothetical protein TREMEDRAFT_38820 [Tremella mesenterica DSM
1558]
Length = 124
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G + + ++N LK + +T + +D + +RG+
Sbjct: 8 VKLLHESLGHVVTVELKTGEMYRGKLMEAEDNLNIALKDITVTARDGRVSQMDMVYIRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
IR+ I+PD L+ P K P A R GRG G RGR
Sbjct: 68 MIRFVIVPD-------LLSSAPMFKRVGPNAMR--GRGIGAARGRA 104
>gi|195657699|gb|ACG48317.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|414865766|tpg|DAA44323.1| TPA: small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSLVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ I+PD L + R++ K G
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGKGSAIG 100
>gi|121707652|ref|XP_001271900.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
clavatus NRRL 1]
gi|119400048|gb|EAW10474.1| small nuclear ribonucleoprotein SmD3, putative [Aspergillus
clavatus NRRL 1]
Length = 136
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGVVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPR-VKPKKPTAGRPVGRGRG-RGRGRGRGRGR 114
+++++I+PD L + + T P+ R RG RGRG G RG+
Sbjct: 72 HVKFFIVPDMLRGNIVRGRTSDDGCADFSATRNAPMFRSRGQRGRGVGLARGK 124
>gi|297839503|ref|XP_002887633.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
gi|297333474|gb|EFH63892.1| hypothetical protein ARALYDRAFT_476783 [Arabidopsis lyrata subsp.
lyrata]
Length = 129
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 53/100 (53%), Gaps = 4/100 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + VS+E+K+G + G++ + + N L+ + K L+H+ +RG+
Sbjct: 9 VKLLHESSGHIVSVEMKSGELYRGSMIECEDNWNCQLENITYKAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
+R+ ++PD L + + V+ K ++ VGRGRG
Sbjct: 69 LVRFIVIPDMLKNAPMFKD----VRGKGKSSSLGVGRGRG 104
>gi|378726753|gb|EHY53212.1| small nuclear ribonucleoprotein D3 [Exophiala dermatitidis
NIH/UT8656]
Length = 116
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 20/112 (17%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++EL +G + G + + +MN LK + T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLELTSGQVYRGKLLEAEDNMNVQLKDITATARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG-RGRGRGRGRGR 114
++R++I+PD L P+ R RG RGRG G RGR
Sbjct: 72 HVRFFIVPDMLR-------------------NAPMFRTRGIRGRGVGLARGR 104
>gi|169614183|ref|XP_001800508.1| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
gi|160707292|gb|EAT82563.2| hypothetical protein SNOG_10228 [Phaeosphaeria nodorum SN15]
Length = 117
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 1/109 (0%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E+ +G + G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAAGHIITLEITSGEVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP-VGRGRGRGRGRGRG 111
++RY+I+PD L + R + GR V R R RG GRG
Sbjct: 69 HVRYFIVPDMLRNAPMFRSRGTRGRGVGLARGRATVNRARASTRGGGRG 117
>gi|226507464|ref|NP_001150683.1| LOC100284316 [Zea mays]
gi|194696928|gb|ACF82548.1| unknown [Zea mays]
gi|195619600|gb|ACG31630.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|195641042|gb|ACG39989.1| small nuclear ribonucleoprotein Sm D3 [Zea mays]
gi|413956400|gb|AFW89049.1| Small nuclear ribonucleoprotein Sm D3 [Zea mays]
Length = 132
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ I+PD L + R++ K G
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGKGSAIG 100
>gi|66807347|ref|XP_637396.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74853183|sp|Q54KX4.1|LSM4_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|60465817|gb|EAL63891.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 177
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 52/105 (49%), Gaps = 5/105 (4%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV-NLDHLSVRGNNIRYYILPDS 73
+ +ELKNG +G + D MN +LK V T K + + +RGN I+Y +PD
Sbjct: 15 IMVELKNGETYNGLLVNCDNWMNINLKNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDE 74
Query: 74 LNLETLLVEETPRVK-PKKPTAGRPVGRG---RGRGRGRGRGRGR 114
+ E+T R ++ + R GRG GRGRG GRGR
Sbjct: 75 IIDLVAEEEQTLRTTYQQRNDSNRGRGRGDGFAGRGRGDASGRGR 119
>gi|428184458|gb|EKX53313.1| hypothetical protein GUITHDRAFT_84386 [Guillardia theta CCMP2712]
Length = 130
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + +++ELK+G + GT+ + +MN ++ V +T + + L+ + +RG
Sbjct: 7 VKLLHEAESHIITVELKSGELYRGTLQEAEDNMNCNMTNVTMTGRDGSISTLEQVFIRGG 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGR 108
IR+ ILPD +++ P K P G + RG+G G GR
Sbjct: 67 LIRFVILPD-------ILKNAPMFKRIDPKQG--ILRGKGVGIGR 102
>gi|340372719|ref|XP_003384891.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Amphimedon queenslandica]
Length = 136
Score = 50.4 bits (119), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ FL L N ++EL+N + GTI VD MNT + + +N ++L ++G
Sbjct: 13 LLCFLQGLQNCKTTVELRNEITIKGTIVNVDDKMNTTISGAEYKYLDGTVMNCENLFIQG 72
Query: 63 NNIRYYILPDSLNLETLL 80
+ IRY +PD ++ TLL
Sbjct: 73 SQIRYVHIPDDIDPMTLL 90
>gi|302796635|ref|XP_002980079.1| hypothetical protein SELMODRAFT_112116 [Selaginella
moellendorffii]
gi|300152306|gb|EFJ18949.1| hypothetical protein SELMODRAFT_112116 [Selaginella
moellendorffii]
Length = 95
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + GT+ + + N L+ + T K L+H+ VRG+
Sbjct: 9 VKLLHEAEGHVVTVELKSGELYRGTLIECEDNWNCQLENITYTAKDGKVSQLEHVFVRGS 68
Query: 64 NIRYYILPDSL 74
+R+ I+PD L
Sbjct: 69 KVRFMIIPDML 79
>gi|290983277|ref|XP_002674355.1| predicted protein [Naegleria gruberi]
gi|284087945|gb|EFC41611.1| predicted protein [Naegleria gruberi]
Length = 134
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 55/108 (50%), Gaps = 2/108 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + + +S+E K+G + G + + SMN L V +T + ++ + +RG+
Sbjct: 9 IKLLHEAESHIISLETKSGELYRGKLIEAEDSMNVQLVDVTVTHRNGQQSAMNTVYIRGS 68
Query: 64 NIRYYILPDSLNLETLL--VEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
IRY++LPD L + V+ T + + + + V RG G G G G
Sbjct: 69 KIRYFVLPDILQKAPMFKVVDSTVKGQGRGYGSQTKVHRGSGLGLGYG 116
>gi|115443639|ref|NP_001045599.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|41052905|dbj|BAD07817.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|41053239|dbj|BAD08200.1| putative small nuclear ribonucleoprotein polypeptide D3 [Oryza
sativa Japonica Group]
gi|113535130|dbj|BAF07513.1| Os02g0102700 [Oryza sativa Japonica Group]
gi|215692366|dbj|BAG87786.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215692586|dbj|BAG88006.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737277|dbj|BAG96206.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189864|gb|EEC72291.1| hypothetical protein OsI_05466 [Oryza sativa Indica Group]
gi|222621997|gb|EEE56129.1| hypothetical protein OsJ_05002 [Oryza sativa Japonica Group]
Length = 132
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G++ + + N L + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGSMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ I+PD L + R++ K G
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGKGSAIG 100
>gi|402224280|gb|EJU04343.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 127
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 17/116 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++ELK G G + + S+N L+ + +T + LD + +RG+
Sbjct: 9 IKLLHESLGHVITVELKTGQTYRGKLADAEDSLNISLRDITVTGRDGRVSQLDSVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA--GRPVGRGRGRG--------RGRG 109
+R++I+PD +++ P K P A GR +G RGR RGRG
Sbjct: 69 MVRFFIVPD-------MLQNAPMFKRVGPNAMKGRGIGTARGRATIMRANARRGRG 117
>gi|313220248|emb|CBY31107.1| unnamed protein product [Oikopleura dioica]
gi|313235868|emb|CBY11255.1| unnamed protein product [Oikopleura dioica]
Length = 162
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + TV++E G + G + + +MN L+ V T + +L ++ +RG+
Sbjct: 7 VKVLHEAEGHTVTVESATGELYRGVLIEAEDNMNMQLRDVSATYRDGRSAHLSNIFIRGS 66
Query: 64 NIRYYILPDSL-NLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
+R+ ILPD L N L V++ K K+P RG GRG RG
Sbjct: 67 QVRFAILPDMLKNAPMLNVDK----KSKQP-------RGLGRGAFRG 102
>gi|330798959|ref|XP_003287516.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
gi|325082462|gb|EGC35943.1| hypothetical protein DICPUDRAFT_47407 [Dictyostelium purpureum]
Length = 168
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV-NLDHLSVRGNNIRYYILPDS 73
+ +ELKNG +G + D MN +L+ V T K + + +RGN I+Y +PD
Sbjct: 15 IMVELKNGETYNGYLINCDNWMNINLRNVIRTSKDSDKFWKIQSCYIRGNTIKYISVPDE 74
Query: 74 LNLETLLVEETPRVKPKKPTAG-RPVGRGRGRG 105
+ L+VEE +P + G GRGRGRG
Sbjct: 75 --IIDLVVEEEQISRPHNLSKGDNTTGRGRGRG 105
>gi|242041599|ref|XP_002468194.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
gi|241922048|gb|EER95192.1| hypothetical protein SORBIDRAFT_01g041430 [Sorghum bicolor]
Length = 132
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 44/92 (47%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G + + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ I+PD L + R++ K G
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGKGSAIG 100
>gi|336269505|ref|XP_003349513.1| hypothetical protein SMAC_03101 [Sordaria macrospora k-hell]
gi|380093412|emb|CCC09070.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 116
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 11/113 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + R GR VG RGR R R GRG
Sbjct: 69 HVRFFIVPDMLRNAPMFRSRNVR--------GRGVGLARGRATVSRARAGGRG 113
>gi|71663921|ref|XP_818947.1| small nuclear ribonucleoprotein SmD3 [Trypanosoma cruzi strain CL
Brener]
gi|70884226|gb|EAN97096.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma cruzi]
Length = 115
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 51/97 (52%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
T+S+E+ NG + GT++ V +MN L + K T K V+L+ + VRG++I ++ LPD+
Sbjct: 18 TISLEVSNGELYTGTLSEVQDNMNVLLISAKKTKKSGKTVDLNSVFVRGSSIVFFQLPDA 77
Query: 74 LNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGR 110
L LV+ + G G G R RGR
Sbjct: 78 LRTSPALVKAGQVLTNALDNRGDSKGFGARRVVKRGR 114
>gi|58264244|ref|XP_569278.1| pre-mRNA splicing factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|134107716|ref|XP_777469.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|321248376|ref|XP_003191109.1| pre-mRNA splicing factor [Cryptococcus gattii WM276]
gi|50260161|gb|EAL22822.1| hypothetical protein CNBB0430 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223928|gb|AAW41971.1| pre-mRNA splicing factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
gi|317457576|gb|ADV19322.1| pre-mRNA splicing factor, putative [Cryptococcus gattii WM276]
gi|405118776|gb|AFR93550.1| pre-mRNA splicing factor [Cryptococcus neoformans var. grubii H99]
Length = 124
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++ELK G + G + + ++N L+ + +T + L+ + +RG+
Sbjct: 8 VKLLHESLGHIITVELKTGEMYRGKLMEAEDTLNIALREITVTARDGRVSQLEQVYIRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
IR+ I+PD L+ + P K P A R GRG G RGR
Sbjct: 68 MIRFIIVPD-------LLAQAPMFKRIGPNAMR--GRGIGAARGRA 104
>gi|301108107|ref|XP_002903135.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
gi|262097507|gb|EEY55559.1| small nuclear ribonucleoprotein Sm D3 [Phytophthora infestans
T30-4]
Length = 113
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 38/67 (56%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
TV+IELKNG + G +T + SMN L V LT + L+ + VRG+ I+ ILPD
Sbjct: 19 TVTIELKNGEVYRGHLTESEDSMNCQLSDVVLTQRDGQKSKLELVYVRGSQIKLVILPDI 78
Query: 74 LNLETLL 80
L LL
Sbjct: 79 LKNSPLL 85
>gi|115451821|ref|NP_001049511.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|108707095|gb|ABF94890.1| Small nuclear ribonucleoprotein Sm D3, putative, expressed [Oryza
sativa Japonica Group]
gi|113547982|dbj|BAF11425.1| Os03g0240800 [Oryza sativa Japonica Group]
gi|215686515|dbj|BAG87776.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765251|dbj|BAG86948.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768316|dbj|BAH00545.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 132
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G + + + N L + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ I+PD L + R++ K G
Sbjct: 69 RVRFMIIPDMLKNAPMFKRLEARIRGKGSAIG 100
>gi|428671714|gb|EKX72629.1| U6 snRNA-associated protein, putative [Babesia equi]
Length = 111
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 50/101 (49%), Gaps = 7/101 (6%)
Query: 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYIL 70
N+ IELKNG G + D MN H+ V T K G + L+ +RGNN++ L
Sbjct: 13 NQPTLIELKNGETYSGILESCDAFMNIHMLNVVCTSKSGTDFWKLNECYIRGNNVKSLRL 72
Query: 71 PDSLNLETLLVEETPRVKP-KKPTAGRPVGRGRGRGRGRGR 110
P+ + L EE+ KP KP A GRGRG+ G R
Sbjct: 73 PNE--VAELAKEES---KPAAKPNAVAYSGRGRGKVLGDPR 108
>gi|261193182|ref|XP_002622997.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
SLH14081]
gi|239589132|gb|EEQ71775.1| small nuclear ribonucleoprotein Sm D3 [Ajellomyces dermatitidis
SLH14081]
Length = 124
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 71
Query: 64 NIRYYILPDSLNLET 78
++R++I+PD L ET
Sbjct: 72 HVRFFIVPDMLRYET 86
>gi|12230258|sp|Q43582.1|LSM4_TOBAC RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 10; Short=GRP 10
gi|790473|emb|CAA58702.1| unnamed protein product [Nicotiana tabacum]
Length = 146
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + VRGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYVRGNTIKYLRVPDEV- 75
Query: 76 LETLLVEETPRVKPKKPTAGRPVGRG 101
++ + E R K P GR RG
Sbjct: 76 IDKVQEEAKSRTDRKPPGVGRARARG 101
>gi|313214383|emb|CBY42774.1| unnamed protein product [Oikopleura dioica]
Length = 137
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 12/107 (11%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + TV++E G + G + + +MN L+ V T + +L ++ +RG+
Sbjct: 7 VKVLHEAEGHTVTVESATGELYRGVLIEAEDNMNMQLRDVSATYRDGRSAHLSNIFIRGS 66
Query: 64 NIRYYILPDSL-NLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
+R+ ILPD L N L V++ K K+P RG GRG RG
Sbjct: 67 QVRFAILPDMLKNAPMLNVDK----KSKQP-------RGLGRGAFRG 102
>gi|354496952|ref|XP_003510587.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like, partial
[Cricetulus griseus]
Length = 102
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYI 69
L + +++L++ + G I VD MN L V T + + V LD L V G N+RY
Sbjct: 4 LQGQITTVDLQDESSARGRIDNVDAFMNIRLANVTYTDRWGHQVELDDLFVTGRNVRYVH 63
Query: 70 LPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
+PD +N+ T +E+ ++ + G G+G+GR
Sbjct: 64 IPDDVNI-TATIEQQLQIIHRVRNFG---GKGQGR 94
>gi|226472944|emb|CAX71158.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
Length = 147
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L V++E +G + G + + +MN H+ + +T + NL + +RG+
Sbjct: 7 IKVLHDAEGHVVTLETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDGRTSNLQQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
IR+ ILPD L +L K+P + +G GRG+ R RGRG
Sbjct: 67 KIRFLILPDMLKNSPML---------KRPQGAKGLGTGRGKNAMLRAGVRGRG 110
>gi|359491835|ref|XP_002270532.2| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Vitis
vinifera]
gi|297745546|emb|CBI40711.3| unnamed protein product [Vitis vinifera]
Length = 132
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 46/92 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + G + + + N L+++ T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKSGELYRGNMIECEDNWNCQLESITFTGKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ ++PD L + R+K K G
Sbjct: 69 KVRFMVIPDMLKNAPMFKRLDARIKGKGSALG 100
>gi|168003064|ref|XP_001754233.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694787|gb|EDQ81134.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 98
Score = 49.7 bits (117), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 42/72 (58%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV+ L + V++ELK+G G++ + + N+ L++V T L+H+S+RG
Sbjct: 8 LVKLLHEAEGHIVTVELKSGEAYRGSLIECEDNWNSQLESVTYTAMDGKVSQLEHVSIRG 67
Query: 63 NNIRYYILPDSL 74
+ +R+ I+PD L
Sbjct: 68 SKVRFMIIPDIL 79
>gi|391342640|ref|XP_003745624.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Metaseiulus
occidentalis]
Length = 138
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN H++ + +T + + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLVEAEDNMNCHMQGITVTYRDGSTSQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGR 112
IR+ ILPD L P +P G+G G GRG+
Sbjct: 67 KIRFLILPDMLK--------------NAPMFKKPPGKGMQTGAAAGRGK 101
>gi|366991799|ref|XP_003675665.1| hypothetical protein NCAS_0C03090 [Naumovozyma castellii CBS
4309]
gi|342301530|emb|CCC69299.1| hypothetical protein NCAS_0C03090 [Naumovozyma castellii CBS
4309]
Length = 102
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + VSIEL G G + + +MN L+ V +T +DH+ VRG+
Sbjct: 8 VKLLNEAQGHIVSIELTTGETYRGKLIESEDNMNVQLRDVVVTQTDSKITRMDHVFVRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+I+++++PD L L + P+ +P P G
Sbjct: 68 HIKFFVVPDMLK-NAPLFKTGPQSRPTPPIRG 98
>gi|125543063|gb|EAY89202.1| hypothetical protein OsI_10698 [Oryza sativa Indica Group]
gi|125585557|gb|EAZ26221.1| hypothetical protein OsJ_10089 [Oryza sativa Japonica Group]
Length = 134
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 46/108 (42%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G + G + + + N L + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKTGEVYRGAMVECEDNWNCQLDNITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
+R+ I+PD L P R R RG+G G G
Sbjct: 69 RVRFMIIPDMLK--------------NAPMFKRLEARIRGKGSAIGVG 102
>gi|301779577|ref|XP_002925209.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Ailuropoda melanoleuca]
gi|281344415|gb|EFB19999.1| hypothetical protein PANDA_014655 [Ailuropoda melanoleuca]
Length = 123
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRWGHRVALDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E +V + G +G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TATIERQLQVIHRVRNFG---SKGQGR 114
>gi|56756683|gb|AAW26514.1| SJCHGC04758 protein [Schistosoma japonicum]
gi|226469480|emb|CAX76570.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469482|emb|CAX76571.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469484|emb|CAX76572.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469486|emb|CAX76573.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469488|emb|CAX76574.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469490|emb|CAX76575.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469492|emb|CAX76576.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469494|emb|CAX76577.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226469496|emb|CAX76578.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
gi|226472942|emb|CAX71157.1| Small nuclear ribonucleoprotein SM D3 [Schistosoma japonicum]
Length = 130
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L V++E +G + G + + +MN H+ + +T + NL + +RG+
Sbjct: 7 IKVLHDAEGHVVTLETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDGRTSNLQQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
IR+ ILPD L +L K+P + +G GRG+ R RGRG
Sbjct: 67 KIRFLILPDMLKNSPML---------KRPQGAKGLGTGRGKNAMLRAGVRGRG 110
>gi|50294275|ref|XP_449549.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528863|emb|CAG62525.1| unnamed protein product [Candida glabrata]
Length = 99
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V+IEL NG G + + +MN L+ V +T + +DH+ VRG+
Sbjct: 6 VKLLSEAQGHVVTIELNNGDTYRGKLVESEDNMNVQLRDVMVTSSTQKLSRMDHVFVRGS 65
Query: 64 NIRYYILPDSL 74
+IR++++PD L
Sbjct: 66 HIRFFVVPDML 76
>gi|156550773|ref|XP_001605596.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Nasonia
vitripennis]
Length = 142
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 58/122 (47%), Gaps = 21/122 (17%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKP------TAGR---PVGRGRGRGRGRG---RG 111
IR+ ILPD L + K+P TAGR + R + RGRGRG RG
Sbjct: 67 KIRFLILPDMLKNAPMF---------KRPGGKGSGTAGRGKSAILRAQARGRGRGQNQRG 117
Query: 112 RG 113
RG
Sbjct: 118 RG 119
>gi|256083677|ref|XP_002578067.1| small nuclear ribonucleoprotein SM-D3 [Schistosoma mansoni]
gi|68165953|gb|AAY87930.1| small nuclear ribonucleoprotein SM-D3 [Schistosoma mansoni]
gi|353230790|emb|CCD77207.1| putative small nuclear ribonucleoprotein SM-D3 [Schistosoma
mansoni]
Length = 130
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L V++E +G + G + + +MN H+ + +T + NL + +RG+
Sbjct: 7 IKVLHDAEGHVVTLETVSGEVFRGKLVEAEDNMNVHMCDLIMTSRDGRTSNLQQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
IR+ ILPD L +L K+P + +G GRG+ R RGRG
Sbjct: 67 KIRFLILPDMLKNSPML---------KRPQGAKGLGTGRGKNAMLRAGVRGRG 110
>gi|429329451|gb|AFZ81210.1| LSM domain-containing protein [Babesia equi]
Length = 121
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 42/71 (59%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V+ EL+N + GT+T V+ +MN L+ V LT+K + L+ + +RG+
Sbjct: 7 VKLLYEGIGHIVTAELQNSQLYRGTLTNVEDNMNCLLEGVTLTMKDGKTLALEQVYLRGS 66
Query: 64 NIRYYILPDSL 74
IR+ + PD L
Sbjct: 67 QIRFMVFPDML 77
>gi|71028700|ref|XP_763993.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
gi|68350947|gb|EAN31710.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 118
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 54/100 (54%), Gaps = 3/100 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++EL+N + GT+T V+ +MN L+ V +T+K + L+ + +RG
Sbjct: 7 IKLLYEGIGHVVTVELQNSNLYRGTLTNVEDNMNCLLEGVVMTMKDGRTIALEQVYLRGA 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKK--PTAGRPVGRG 101
I++ I PD L + + P+ K K+ P G P+ G
Sbjct: 67 QIQFMIFPDMLR-HAPMFKGNPKDKSKQGVPQMGMPMRPG 105
>gi|254584500|ref|XP_002497818.1| ZYRO0F14212p [Zygosaccharomyces rouxii]
gi|238940711|emb|CAR28885.1| ZYRO0F14212p [Zygosaccharomyces rouxii]
Length = 100
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + VS+EL G G + + +MN L+ V +T +DH+ VRG+
Sbjct: 6 VKLLNEAQGHVVSLELTTGETYRGKLVESEDNMNVQLRDVTVTGVDSQVTRMDHVFVRGS 65
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
++R++++PD L L + P+ +P P G
Sbjct: 66 HVRFFVVPDMLE-NAPLFKIGPQSRPSPPIRG 96
>gi|161899151|ref|XP_001712802.1| mRNA splicing factor snRNP Sm-D [Bigelowiella natans]
gi|75756295|gb|ABA27190.1| mRNA splicing factor snRNP Sm-D [Bigelowiella natans]
Length = 77
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 39/63 (61%)
Query: 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYY 68
KL NE++ I LK+ T + GT+ DI N LK K++ K KN + L +RGN++RY
Sbjct: 10 KLKNESLKIVLKSHTTIIGTLQDSDILGNIVLKFAKVSQKNKNEMIYKDLIIRGNSVRYI 69
Query: 69 ILP 71
ILP
Sbjct: 70 ILP 72
>gi|147822390|emb|CAN59901.1| hypothetical protein VITISV_002889 [Vitis vinifera]
Length = 116
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEAAGHVVTVELKSGELYRGSMIECEDNWNCQLENITFTAKDGKVSQLEHVFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+ + I PD L + RVK K G +G GRGR
Sbjct: 69 KVPWLI-PDMLKNAPMFKRLDARVKGK----GSALGVGRGRA 105
>gi|91084331|ref|XP_972583.1| PREDICTED: similar to AGAP012380-PA [Tribolium castaneum]
Length = 137
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 13/110 (11%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGR--------PVGRGRGRG 105
IR+ ILPD L + ++T K TAGR RGRGRG
Sbjct: 67 KIRFLILPDMLKNAPMFKKQT-----KAGTAGRGKSAILRAQAARGRGRG 111
>gi|395830185|ref|XP_003788215.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 1
[Otolemur garnettii]
gi|395830187|ref|XP_003788216.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 isoform 2
[Otolemur garnettii]
Length = 123
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L + +++L++ ++ G I VD MN L V T + + V LD L V G
Sbjct: 17 LIILLQGLQGQVTTVDLRDESVARGRIDNVDAFMNIRLANVTYTDRRGHQVELDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N+ T +E ++ + G +G+GR
Sbjct: 77 RNVRYVHIPDDVNI-TATIEHQLQLIHRVRNFG---AKGQGR 114
>gi|46123175|ref|XP_386141.1| hypothetical protein FG05965.1 [Gibberella zeae PH-1]
Length = 365
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 20/112 (17%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +LD + +RG+
Sbjct: 259 IKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 318
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG-RGRGRGRGRGR 114
++R++I+PD L P+ R R RGRG G RGR
Sbjct: 319 HVRFFIVPDMLR-------------------NAPMFRSRNVRGRGVGLARGR 351
>gi|328856039|gb|EGG05162.1| hypothetical protein MELLADRAFT_48913 [Melampsora larici-populina
98AG31]
Length = 138
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
+ L + +++ELK G + G + + ++N LK + +T + LD + +RG
Sbjct: 10 KLLHEALGHVITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDGRVTQLDQVYIRGPM 69
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
IR Y++PD +++ P K GR +G RGR
Sbjct: 70 IRLYVIPD-------MLQNAPMFKRGTGVKGRGIGTARGRA 103
>gi|303279759|ref|XP_003059172.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226459008|gb|EEH56304.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 129
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HLK V T K G + + VRGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVSCDTWMNVHLKEVICTSKDGDRFWRMANCYVRGNTIKYVCVPDEVI 76
Query: 76 LETLLVEETPRVKPKKPTA 94
L+ EE R K +PT
Sbjct: 77 --GLVEEENLRKKDSRPTV 93
>gi|342888751|gb|EGU87970.1| hypothetical protein FOXB_01453 [Fusarium oxysporum Fo5176]
gi|408397687|gb|EKJ76827.1| hypothetical protein FPSE_03013 [Fusarium pseudograminearum CS3096]
Length = 115
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
++R++I+PD ++ P + + RGRG G RGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRNV-------RGRGVGLARGRA 102
>gi|307192020|gb|EFN75404.1| Small nuclear ribonucleoprotein Sm D3 [Harpegnathos saltator]
Length = 143
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRGR 114
IR+ ILPD +++ P K GRG+ R + RGRGRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQ 113
>gi|307109545|gb|EFN57783.1| hypothetical protein CHLNCDRAFT_143127 [Chlorella variabilis]
Length = 126
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ELK+G I G + + + N L V+ T + +++H+ +RG
Sbjct: 16 IKLLHEATGHVCTVELKSGEIYRGEMYEAEDNWNVQLSNVQATGRDGKVTHMEHIFIRGG 75
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+R+ I+PD L + P+ K K G VG GRGR
Sbjct: 76 RVRFVIVPDMLKNAPMFKRIDPKNKMKSAVLG--VG-GRGRA 114
>gi|340053110|emb|CCC47397.1| putative small nuclear ribonucleoprotein SmD3 [Trypanosoma vivax
Y486]
Length = 115
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 4/100 (4%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
VS+E+ NG++ GT++ ++ +MN L + T K N+ + VRG++I ++ LPD+L
Sbjct: 19 VSLEVANGSVYTGTLSQLEDNMNVLLTKAQKTSKSGRVENMASVLVRGSHIVFFQLPDAL 78
Query: 75 NLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
L++ V P+A G G+G G R RGR
Sbjct: 79 RAGPALLKAGTIV----PSALDARGEGKGFGERRTVKRGR 114
>gi|307192021|gb|EFN75405.1| Small nuclear ribonucleoprotein Sm D3 [Harpegnathos saltator]
Length = 142
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRGR 114
IR+ ILPD +++ P K GRG+ R + RGRGRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQ 113
>gi|388579924|gb|EIM20243.1| Sm-like ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 123
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 17/108 (15%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
V+IELK+G + G + + ++N L+ + +T + LD + +RG+ I++ ++PD
Sbjct: 16 VVTIELKSGQMYRGKLQEAEDNLNVSLQDITVTARDGRVSQLDQVYIRGSMIKFLVVPD- 74
Query: 74 LNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG--------RGRG 113
+++ P K P A + GRG G RGR RGRG
Sbjct: 75 ------MLQNAPMFKRVGPNAMK--GRGIGTARGRATIMRANARRGRG 114
>gi|255930807|ref|XP_002556960.1| Pc12g00570 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581579|emb|CAP79684.1| Pc12g00570 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 99
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 15/108 (13%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N+TV+IELKN + G + VD +N L +++ K P HLS
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGILKSVDQYLNIKLDDIEVLDLAKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGR 102
+RG+ +RY +LP S ++ L+E+ R + A G+ R
Sbjct: 57 VKNMFIRGSVVRYVMLPRS-EVDVGLLEDATR----RAEAANQAGKAR 99
>gi|145347482|ref|XP_001418193.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578422|gb|ABO96486.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 115
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +GT+ D MN HLK V T K G + VRGN I+Y +PD +
Sbjct: 17 VELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMAECYVRGNTIKYVCVPDEV 75
>gi|212538167|ref|XP_002149239.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
gi|210068981|gb|EEA23072.1| small nuclear ribonucleoprotein SmD3, putative [Talaromyces
marneffei ATCC 18224]
Length = 114
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 58/113 (51%), Gaps = 13/113 (11%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + ++ +MN LK + +T + +LD + +RG+
Sbjct: 12 IKLLNEAQGHVVTLEITSGQVYRGKL--LEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGRG 113
++R++I+PD L + R GR VG RG+ R RG+ RG
Sbjct: 70 HVRFFIVPDMLRNAPMFRTRGQR--------GRGVGLARGKATVNRARGQRRG 114
>gi|331242127|ref|XP_003333710.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|309312700|gb|EFP89291.1| small nuclear ribonucleoprotein D3 [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 131
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
+ L + +++ELK G + G + + ++N LK + +T + LD + +RG
Sbjct: 10 KLLHEALGHVITVELKTGQVYRGKLHDAEDNLNISLKDITVTHRDGRVTQLDQVYIRGPM 69
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
IR Y++PD +++ P K GR +G RGR
Sbjct: 70 IRLYVVPD-------MLQNAPMFKRGTGVKGRGIGTARGRA 103
>gi|343427423|emb|CBQ70950.1| related to small nuclear ribonucleoprotein sm d3 [Sporisorium
reilianum SRZ2]
Length = 136
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 53/106 (50%), Gaps = 9/106 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ + + +++ELK G GT+ + + N +K + +T +L+++ +RGN
Sbjct: 8 VKLIHEAVGHVITVELKGGAAYRGTLYDAEDNFNIAMKDITVTAPDGKQSHLENVYIRGN 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRG 109
+R+ I+PD ++++ P K P + GRG G RGR
Sbjct: 68 MLRFIIVPD-------MLQQAPMFKRIGPNGMK--GRGIGSARGRA 104
>gi|260790675|ref|XP_002590367.1| hypothetical protein BRAFLDRAFT_76640 [Branchiostoma floridae]
gi|229275559|gb|EEN46378.1| hypothetical protein BRAFLDRAFT_76640 [Branchiostoma floridae]
Length = 130
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 37/74 (50%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L + ++EL++ V G I VD MNT +K T + D V+G
Sbjct: 14 LVCLLQAIQGHETTVELRDEASVFGLIVNVDAFMNTTMKYCTYTDHRGKTMQFDDFYVQG 73
Query: 63 NNIRYYILPDSLNL 76
NIR+ +PD++N+
Sbjct: 74 RNIRFVQIPDAVNM 87
>gi|17542052|ref|NP_503027.1| Protein SNR-1 [Caenorhabditis elegans]
gi|21542463|sp|Q17348.2|SMD3_CAEEL RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5832794|emb|CAB55132.1| Protein SNR-1 [Caenorhabditis elegans]
Length = 136
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E G + G ++ + +MN L +T + LD++ +RGN
Sbjct: 8 IKILHEAEGHMVTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGN 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRG 113
IR+ ILPD +++ P K +G G G RGRGRG
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAIGMGLGGLDQRGRGRG 110
>gi|340519305|gb|EGR49544.1| predicted protein [Trichoderma reesei QM6a]
gi|358388432|gb|EHK26025.1| hypothetical protein TRIVIDRAFT_27430, partial [Trichoderma virens
Gv29-8]
gi|358392460|gb|EHK41864.1| hypothetical protein TRIATDRAFT_134655, partial [Trichoderma
atroviride IMI 206040]
Length = 114
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E+ +G G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
++R++I+PD ++ P + + GR VG RGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRN-VRGRGVGLARGRA 102
>gi|19112491|ref|NP_595699.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe 972h-]
gi|12230614|sp|Q9UUC6.1|SMD3_SCHPO RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|5689996|emb|CAB52041.1| Sm snRNP core protein Smd3 [Schizosaccharomyces pombe]
Length = 97
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 42/72 (58%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
++ L + V++EL+NG+ G + + +MN ++ + +T + +LD + +RG
Sbjct: 4 CIKLLHETQGHIVTMELENGSTYRGKLIEAEDNMNCQMRDISVTARDGRVSHLDQVYIRG 63
Query: 63 NNIRYYILPDSL 74
++IR+ I+PD L
Sbjct: 64 SHIRFLIVPDML 75
>gi|303273780|ref|XP_003056242.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462326|gb|EEH59618.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 122
Score = 48.1 bits (113), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 42/84 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + TV+IELKNG GT+ + + N L+ + T + L+H +RG+
Sbjct: 13 VKLLHEAEGHTVTIELKNGETYRGTLLESEDNWNCQLEGITQTGRDGRVNQLEHAYIRGS 72
Query: 64 NIRYYILPDSLNLETLLVEETPRV 87
IR+ ++PD L + PR
Sbjct: 73 KIRFLVIPDMLKNAPMFKRIDPRA 96
>gi|327305527|ref|XP_003237455.1| small nuclear ribonucleoprotein LSM2 [Trichophyton rubrum CBS
118892]
gi|326460453|gb|EGD85906.1| small nuclear ribonucleoprotein LSM2 [Trichophyton rubrum CBS
118892]
gi|326476056|gb|EGE00066.1| small nuclear ribonucleoprotein LSM2 [Trichophyton tonsurans CBS
112818]
gi|326484026|gb|EGE08036.1| small nuclear ribonucleoprotein LSM2 [Trichophyton equinum CBS
127.97]
Length = 98
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N TV+IELKN + GT+ VD +N L +++ + P HLS
Sbjct: 1 MLFFSFFKTLTNRTVTIELKNDIRIRGTLKSVDQYLNVKLDDIEVLDLNEYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++T L+E+ R
Sbjct: 57 VSNVFIRGSVVRYIVLPQS-EVDTGLLEDATR 87
>gi|302410425|ref|XP_003003046.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
gi|261358070|gb|EEY20498.1| small nuclear ribonucleoprotein Sm D3 [Verticillium albo-atrum
VaMs.102]
Length = 154
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E+ +G G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNIQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
++R++I+PD L + R GR VG RGR
Sbjct: 69 HVRFFIVPDMLRNAPMFRSRNQR--------GRGVGLARGRA 102
>gi|296805700|ref|XP_002843674.1| small nuclear ribonucleoprotein LSM2 [Arthroderma otae CBS
113480]
gi|238844976|gb|EEQ34638.1| small nuclear ribonucleoprotein LSM2 [Arthroderma otae CBS
113480]
Length = 98
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N TV+IELKN + GT+ VD +N L +++ + P HLS
Sbjct: 1 MLFFSFFKTLTNRTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLNEYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++T L+E+ R
Sbjct: 57 VRNVFIRGSVVRYIVLPQS-EVDTGLLEDATR 87
>gi|322694233|gb|EFY86068.1| small nuclear ribonucleoprotein Sm D3 [Metarhizium acridum CQMa
102]
Length = 113
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 11/112 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLLDAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRGR 112
++R++I+PD L + R GR VG RGR R R GR
Sbjct: 69 HVRFFIVPDMLRNAPMFRSRNLR--------GRGVGLARGRATVSRARAGGR 112
>gi|400601331|gb|EJP68974.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 115
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E+ +G G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHIITLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
++R++I+PD L + R GR VG RGR
Sbjct: 69 HVRFFIVPDMLRNAPMFRSSNLR--------GRGVGMARGRA 102
>gi|452985910|gb|EME85666.1| hypothetical protein MYCFIDRAFT_52885 [Pseudocercospora fijiensis
CIRAD86]
Length = 115
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN L+ + +T + +LD + +RG+
Sbjct: 9 IKLLNEATGHQVTVEIDSGQTYRGRLIEAEDNMNCQLENINVTQRDGRVTHLDRVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
++R +I+PD ++ P K + T GR VG RGR
Sbjct: 69 HVRLFIVPD-------MLRNAPMFK-SRGTRGRGVGLARGRA 102
>gi|315046638|ref|XP_003172694.1| small nuclear ribonucleoprotein LSM2 [Arthroderma gypseum CBS
118893]
gi|311343080|gb|EFR02283.1| small nuclear ribonucleoprotein LSM2 [Arthroderma gypseum CBS
118893]
Length = 98
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N TV+IELKN + GT+ VD +N L +++ + P HLS
Sbjct: 1 MLFFSFFKTLTNRTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLNEYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++T L+E+ R
Sbjct: 57 VSNVFIRGSVVRYIVLPQS-EVDTGLLEDATR 87
>gi|334329130|ref|XP_003341185.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Monodelphis domestica]
Length = 123
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L +++L++ T+ G + VD MN L V T + V LD L V G
Sbjct: 17 LVILLQGLRGLVTTVDLRDETVARGRVDNVDAFMNIRLAEVTYTDRQGQQVQLDDLFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEE 83
N+RY +PD +++ + ++
Sbjct: 77 RNVRYVHIPDDVDITATIEQQ 97
>gi|307185014|gb|EFN71243.1| Small nuclear ribonucleoprotein Sm D3 [Camponotus floridanus]
Length = 142
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRGR 114
IR+ ILPD +++ P K GRG+ R + RGRGRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQ 113
>gi|332028142|gb|EGI68193.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 141
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRGR 114
IR+ ILPD +++ P K GRG+ R + RGRGRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQ 113
>gi|156848641|ref|XP_001647202.1| hypothetical protein Kpol_1036p91 [Vanderwaltozyma polyspora DSM
70294]
gi|156117886|gb|EDO19344.1| hypothetical protein Kpol_1036p91 [Vanderwaltozyma polyspora DSM
70294]
Length = 100
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++EL G G + + +MN L+ V +T +DH+ VRG+
Sbjct: 6 LKLLSEAQGHVVTLELSTGETYRGKLVDSEDNMNVQLQDVTVTGVDSKVSRMDHVFVRGS 65
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+I+++++PD L L + P+ KP P G
Sbjct: 66 HIKFFVVPDLLK-NAPLFNKGPQSKPPPPIRG 96
>gi|332028955|gb|EGI68973.1| Small nuclear ribonucleoprotein Sm D3 [Acromyrmex echinatior]
Length = 142
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 10/114 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN ++ + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGQVGQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG---RGRGRGRGRGR 114
IR+ ILPD +++ P K GRG+ R + RGRGRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMFKRPGGKGSGTAGRGKSAILRAQARGRGRGQ 113
>gi|399215849|emb|CCF72537.1| unnamed protein product [Babesia microti strain RI]
Length = 142
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + ++ E NG + GT+T V+ +MN ++ V +T++ + L+ + +RG
Sbjct: 33 VKLLYEGIGHIITAESCNGLLYRGTLTNVEDTMNCLMEGVVVTMRDGKTMALEQVYLRGA 92
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK 90
IR+ + PD L + ++ PR +P+
Sbjct: 93 QIRFMVFPDMLR-HAPMFKQNPRDRPR 118
>gi|395526532|ref|XP_003765416.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Sarcophilus
harrisii]
Length = 123
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 38/74 (51%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L +++L++ T+ G + VD MN L V T + V LD L V G
Sbjct: 17 LVILLQGLRGLVTTVDLRDETVARGRVDNVDAFMNIRLAEVTYTDRQGQQVQLDDLFVTG 76
Query: 63 NNIRYYILPDSLNL 76
N+RY +PD +++
Sbjct: 77 RNVRYVHIPDEVDI 90
>gi|398407783|ref|XP_003855357.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici IPO323]
gi|339475241|gb|EGP90333.1| hypothetical protein MYCGRDRAFT_36580 [Zymoseptoria tritici IPO323]
Length = 119
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 55/111 (49%), Gaps = 11/111 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN L+ + +T + +LD + +RG+
Sbjct: 9 IKLLNEATGHQVTVEITSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHLDRVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG---RGRGRG 111
++R +I+PD ++ P + K GR VG RGR R RG G
Sbjct: 69 HVRLFIVPD-------MLRNAPMFR-SKGVRGRGVGLARGRATVNRARGSG 111
>gi|145495655|ref|XP_001433820.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145545630|ref|XP_001458499.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124400940|emb|CAK66423.1| unnamed protein product [Paramecium tetraurelia]
gi|124426319|emb|CAK91102.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 42/77 (54%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ + + + V++ELK G + G + + +MN L V++ + P++L+ + +RG+
Sbjct: 7 LKIMHEAAHHIVTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQVYLRGS 66
Query: 64 NIRYYILPDSLNLETLL 80
IR+ ++PD +
Sbjct: 67 QIRFVVIPDVFKYAPMF 83
>gi|237829847|ref|XP_002364221.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|211961885|gb|EEA97080.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221487294|gb|EEE25526.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii GT1]
gi|221507086|gb|EEE32690.1| small nuclear ribonucleoprotein, putative [Toxoplasma gondii VEG]
Length = 131
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + TV++E+K+G + G + + +MN L+TV +T + V+L+ + +RG+
Sbjct: 8 VKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLEQVYIRGS 67
Query: 64 NIRYYILPDSL 74
+++ + PD L
Sbjct: 68 QVKFIVFPDML 78
>gi|268534544|ref|XP_002632403.1| C. briggsae CBR-SNR-1 protein [Caenorhabditis briggsae]
Length = 136
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + TV++E G + G + + +MN L +T + L+++ +RGN
Sbjct: 8 IKILHEAEGHTVTLETVTGEVYRGKLIEAEDNMNCQLSETIVTFRDGRSHQLENVFIRGN 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRG 113
IR+ ILPD +++ P K +G G G RGRGRG
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAIGMGLGGLDQRGRGRG 110
>gi|341886102|gb|EGT42037.1| CBN-SNR-1 protein [Caenorhabditis brenneri]
Length = 136
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + TV++E G + G + + +MN L +T + L+++ +RGN
Sbjct: 8 IKILHEAEGHTVTLETVTGEVYRGKLIEAEDNMNCQLAETIVTFRDGRSHQLENVFIRGN 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRG 113
IR+ ILPD +++ P K +G G G RGRGRG
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAIGMGLGGLDQRGRGRG 110
>gi|401411081|ref|XP_003884988.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
gi|325119407|emb|CBZ54960.1| hypothetical protein NCLIV_053870 [Neospora caninum Liverpool]
Length = 132
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + TV++E+K+G + G + + +MN L+TV +T + V+L+ + +RG+
Sbjct: 8 VKLLYEGLGHTVTVEIKSGEVYRGVLENAEDNMNCLLQTVTVTHRDGRVVSLEQVYIRGS 67
Query: 64 NIRYYILPDSL 74
+++ + PD L
Sbjct: 68 QVKFIVFPDML 78
>gi|171693559|ref|XP_001911704.1| hypothetical protein [Podospora anserina S mat+]
gi|170946728|emb|CAP73532.1| unnamed protein product [Podospora anserina S mat+]
Length = 118
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 8/102 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
++R++I+PD L + R GR VG RGR
Sbjct: 69 HVRFFIVPDMLRNAPMFRSRNVR--------GRGVGLARGRA 102
>gi|440492342|gb|ELQ74917.1| Small nuclear ribonucleoprotein SMD1 [Trachipleistophora hominis]
Length = 88
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M++++FL L + ++IE K TI+ GT+T +D MN +L + PV D +
Sbjct: 1 MQIIQFLRTLKTKRLTIETKEKTIIKGTLTKIDKKMNIYLTNATI---HNEPV--DSYFI 55
Query: 61 RGNNIRYYILPDS 73
RG +RY I+ +S
Sbjct: 56 RGTQVRYVIVEES 68
>gi|391324905|ref|XP_003736982.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Metaseiulus occidentalis]
Length = 136
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 45/96 (46%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L+ + L +++L+N T V GTI VD MN + +T+ + L VR
Sbjct: 17 SLLCLVQALEGRETTVDLRNETEVVGTIEVVDGRMNIQMSDAVVTMPNGSSRQFSFLHVR 76
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP 97
G N+RY +P +N+ + + RV+ P A P
Sbjct: 77 GRNVRYVHIPPDVNIMKTIEDRVQRVQGVIPAAQAP 112
>gi|84996607|ref|XP_953025.1| snRNP protein [Theileria annulata strain Ankara]
gi|65304021|emb|CAI76400.1| snRNP protein, putative [Theileria annulata]
Length = 118
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
V++EL+N + GT+T V+ +MN ++ V +T+K + L+ + +RG I++ I PD
Sbjct: 17 VVTVELQNSNLYRGTLTNVEDNMNCLMEGVVMTMKDGRTLALEQVYLRGAQIQFMIFPDM 76
Query: 74 L 74
L
Sbjct: 77 L 77
>gi|145493031|ref|XP_001432512.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399624|emb|CAK65115.1| unnamed protein product [Paramecium tetraurelia]
Length = 122
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 37/66 (56%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
V++ELK G + G + + +MN L V++ + P++L+ + +RG+ IR+ ++PD
Sbjct: 18 VTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQVYLRGSQIRFVVIPDVF 77
Query: 75 NLETLL 80
+
Sbjct: 78 KYAPMF 83
>gi|367016010|ref|XP_003682504.1| hypothetical protein TDEL_0F04820 [Torulaspora delbrueckii]
gi|359750166|emb|CCE93293.1| hypothetical protein TDEL_0F04820 [Torulaspora delbrueckii]
Length = 100
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + VS+EL G G + + +MN L+ +T ++H+ VRG+
Sbjct: 6 VKLLNEAQGHIVSLELTTGETYRGKLVESEDNMNVQLRDATVTGADSKVTRMNHVFVRGS 65
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
IR++++PD L L + P+ +P P G
Sbjct: 66 QIRFFVVPDMLE-NAPLFKTGPQSRPTPPIRG 96
>gi|72387630|ref|XP_844239.1| small nuclear ribonucleoprotein SmD3 [Trypanosoma brucei TREU927]
gi|62360517|gb|AAX80930.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma brucei]
gi|70800772|gb|AAZ10680.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261327389|emb|CBH10364.1| small nuclear ribonucleoprotein SmD3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 115
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 6/99 (6%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
TVS+ELKNG + GT++ V +M L + + T V++ + V G NI ++ LPD+
Sbjct: 18 TVSLELKNGELYTGTLSEVVDNMGVLLTSARKTTMAGREVDMPKVLVCGTNIVFFQLPDA 77
Query: 74 LNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGR 112
L P +K K GRG G+G G R R
Sbjct: 78 LRC------CPPLMKMGKLLPSDLDGRGDGKGFGAHRSR 110
>gi|449302555|gb|EMC98564.1| hypothetical protein BAUCODRAFT_137738 [Baudoinia compniacensis
UAMH 10762]
Length = 116
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 52/102 (50%), Gaps = 8/102 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN L+ + +T + +LD + +RG+
Sbjct: 9 IKLLNEATGHQVTVEIDSGQTYRGKLIEAEDNMNCQLENINVTQRDGRVTHLDRVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
++R +I+PD ++ P + ++ GR VG RGR
Sbjct: 69 HVRLFIVPD-------MLRNAPMFR-QRANKGRGVGLARGRA 102
>gi|308804932|ref|XP_003079778.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
gi|116058235|emb|CAL53424.1| glycine rich protein-common tobacco sp|Q43582|LSM4_TOBAC Probable
U6 snRNA-associated Sm-lik (ISS) [Ostreococcus tauri]
Length = 779
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +GT+ D MN HLK V T K G ++ VRGN I+Y +PD +
Sbjct: 675 VELKNGETYNGTLASCDTWMNVHLKEVICTSKDGDRFWRMEECYVRGNTIKYVCVPDEV 733
>gi|389644246|ref|XP_003719755.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|351639524|gb|EHA47388.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae 70-15]
gi|440466514|gb|ELQ35778.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae Y34]
gi|440477082|gb|ELQ58226.1| small nuclear ribonucleoprotein Sm D3 [Magnaporthe oryzae P131]
Length = 119
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E+ G G + + +MN L+ + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHIITLEITTGQTYRGKLIDAEDNMNIQLRDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
++R++I+PD ++ P + + GR VG RGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRN-VRGRGVGLARGRA 102
>gi|116206378|ref|XP_001228998.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88183079|gb|EAQ90547.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 115
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
++R++I+PD ++ P + + RGRG G RGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRNV-------RGRGVGLARGRA 102
>gi|66803220|ref|XP_635453.1| hypothetical protein DDB_G0291015 [Dictyostelium discoideum AX4]
gi|74851581|sp|Q54F84.1|Y1015_DICDI RecName: Full=Putative uncharacterized protein DDB_G0291015
gi|60463760|gb|EAL61938.1| hypothetical protein DDB_G0291015 [Dictyostelium discoideum AX4]
Length = 137
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLT---LKGKNPVNLDHLSVRGNNIRYYILP 71
++I+L++ ++GTIT VD +N L KLT K K ++ + ++ NIR+ +P
Sbjct: 43 ITIQLRSNCEIYGTITNVDAYLNIELSDAKLTNTRYKNKRDEHVQEILIQSRNIRFIQIP 102
Query: 72 DSLNLETLL 80
D ++L +LL
Sbjct: 103 DKIDLNSLL 111
>gi|85102544|ref|XP_961352.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
gi|12718393|emb|CAC28701.1| probable small nuclear ribonucleoprotein SM D3 [Neurospora crassa]
gi|28922896|gb|EAA32116.1| small nuclear ribonucleoprotein Sm D3 [Neurospora crassa OR74A]
Length = 116
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLIEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
++R++I+PD ++ P + + RGRG G RGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRNV-------RGRGVGLARGRA 102
>gi|380480731|emb|CCF42263.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 138
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 47/90 (52%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPT 93
++R++I+PD L + R + +KP
Sbjct: 69 HVRFFIVPDMLRNAPMFRSRNVRGRGEKPA 98
>gi|162605962|ref|XP_001713496.1| probable small nuclear ribonucleoprotein D1 [Guillardia theta]
gi|13794421|gb|AAK39798.1|AF083031_162 probable small nuclear ribonucleoprotein D1 [Guillardia theta]
Length = 77
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVK-LTLKGKNPVNLDHLS 59
MK+ F+ +L E + IELKN I+ G I VD +MN + + + + G+ +LS
Sbjct: 1 MKIYNFIKQLKGEEIIIELKNNIIIMGVIVNVDKNMNLKVSNISDIDIDGQKFFK-GNLS 59
Query: 60 VRGNNIRYYILPDSLNL 76
+R NNIR +LP + L
Sbjct: 60 IRFNNIRIMVLPSKIEL 76
>gi|322787518|gb|EFZ13606.1| hypothetical protein SINV_14465 [Solenopsis invicta]
Length = 115
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + T++ E G + G + + +MN ++ + +T + L+++ +RG+
Sbjct: 17 IKVLHEAEGHTITCETNTGEVYRGKLIEAEDNMNCQMQNITVTYRDGRVAQLENVYIRGS 76
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG-RGRGR 108
IR+ ILPD L P RP G+G G GRG+
Sbjct: 77 KIRFLILPDMLK--------------NAPMFKRPGGKGSGTAGRGK 108
>gi|452845934|gb|EME47867.1| hypothetical protein DOTSEDRAFT_42182 [Dothistroma septosporum
NZE10]
Length = 115
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 20/112 (17%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN L+ + +T + +LD + +RG+
Sbjct: 9 IKLLNEATGHQVTVEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHLDRVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG-RGRGRGRGRGR 114
++R +I+PD L P+ R RG RGRG G RGR
Sbjct: 69 HVRLFIVPDMLR-------------------NAPMFRSRGTRGRGVGLARGR 101
>gi|402079014|gb|EJT74279.1| small nuclear ribonucleoprotein Sm D3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 130
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 8/102 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E+ G G + + +MN L+ + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHIITLEITTGQTYRGKLIEAEDNMNIQLRDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
++R++I+PD ++ P + + GR VG RGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRN-VRGRGVGLARGRA 102
>gi|295672151|ref|XP_002796622.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226283602|gb|EEH39168.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226288343|gb|EEH43855.1| small nuclear ribonucleoprotein LSM2 [Paracoccidioides
brasiliensis Pb18]
Length = 98
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N TV+IELKN + GT+ VD +N L +++ + P HLS
Sbjct: 1 MLFFSFFKTLTNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
VRG+ +RY +LP + LL + T R + R
Sbjct: 57 VKNIFVRGSVVRYVVLPQAEVDRGLLEDATRREAANQANKAR 98
>gi|406867417|gb|EKD20455.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 115
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G + G + + +MN LK + +T + +LD + +RG+
Sbjct: 9 IKLLNEAQGHVVTLEITSGQVYRGKLLEAEDNMNVQLKDITVTARDGRVSHLDQVYIRGS 68
Query: 64 NIRYYILPDSL 74
++R++I+PD L
Sbjct: 69 HVRFFIVPDML 79
>gi|393238250|gb|EJD45788.1| U6 snRNA-associated Sm-like protein LSm2, partial [Auricularia
delicata TFB-10046 SS5]
Length = 101
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-VNLDHLSVRGNNIRYY 68
L ++TV++ELKN + G + VD +N L ++K+ + ++P + L + +RG+ +RY
Sbjct: 16 LTDQTVTVELKNDLCITGVLKSVDQFLNIRLDSIKVLDEARHPHMALKNCFIRGSVVRYV 75
Query: 69 ILPDSLNLETLLVEETPR 86
LP + ++T L+E+ R
Sbjct: 76 QLPAN-AVDTQLLEDATR 92
>gi|261203087|ref|XP_002628757.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|239586542|gb|EEQ69185.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
SLH14081]
gi|327349625|gb|EGE78482.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 98
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 47/102 (46%), Gaps = 10/102 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N TV+IELKN + GT+ VD +N L +++ + P HLS
Sbjct: 1 MLFFSFFKTLTNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
VRG+ +RY +LP + LL + T R + R
Sbjct: 57 VKNIFVRGSVVRYIVLPQAEVDRGLLEDATRREAANQANKAR 98
>gi|393238251|gb|EJD45789.1| U6 snRNA-associated Sm-like protein LSm2 [Auricularia delicata
TFB-10046 SS5]
Length = 97
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 48/78 (61%), Gaps = 2/78 (2%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-VNLDHLSVRGNNIRYY 68
L ++TV++ELKN + G + VD +N L ++K+ + ++P + L + +RG+ +RY
Sbjct: 12 LTDQTVTVELKNDLCITGVLKSVDQFLNIRLDSIKVLDEARHPHMALKNCFIRGSVVRYV 71
Query: 69 ILPDSLNLETLLVEETPR 86
LP + ++T L+E+ R
Sbjct: 72 QLPANA-VDTQLLEDATR 88
>gi|170596749|ref|XP_001902882.1| hypothetical protein Bm1_57120 [Brugia malayi]
gi|158589164|gb|EDP28268.1| hypothetical protein Bm1_57120 [Brugia malayi]
Length = 68
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 33/46 (71%), Gaps = 6/46 (13%)
Query: 57 HLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGR 102
+L +GNNIRY ILPD++ L+TLLV++ PR KKP G GRGR
Sbjct: 2 NLFKKGNNIRYIILPDTIPLDTLLVDDEPR---KKPARG---GRGR 41
>gi|156084564|ref|XP_001609765.1| small nuclear ribonucleoprotein (snRNP) [Babesia bovis T2Bo]
gi|154797017|gb|EDO06197.1| small nuclear ribonucleoprotein (snRNP), putative [Babesia bovis]
Length = 110
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
V++E++N + GT+ V+ +MN L+ V + +K + L+ + +RG IR+ I PD L
Sbjct: 18 VTVEMQNSQLYRGTLVNVEDNMNCLLEGVTMVMKDGKTLALEQVFLRGAQIRFVIFPDML 77
>gi|425767839|gb|EKV06392.1| hypothetical protein PDIG_77590 [Penicillium digitatum PHI26]
gi|425783770|gb|EKV21591.1| hypothetical protein PDIP_04700 [Penicillium digitatum Pd1]
Length = 121
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N+TV+IELKN + G + VD +N L +++ K P ++ ++
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGILKSVDQYLNIKLDDIEVLDLAKYPHLSSVKNM 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++ L+E+ R
Sbjct: 61 FIRGSVVRYVMLPRS-EVDVGLLEDATR 87
>gi|50759758|ref|XP_417768.1| PREDICTED: LSM10, U7 small nuclear RNA associated [Gallus gallus]
Length = 123
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L+ +++L++ + G + VD MN L V T + LD + V G
Sbjct: 17 LVILLQGLHGHVTTVDLRDESTATGRVANVDAFMNMRLAEVTFTDRRGEVSQLDEIFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGR 100
N+RY +PD +++ + + + + GR GR
Sbjct: 77 RNVRYVHIPDEVDIRATIERQLQAIHRVRYFGGRDKGR 114
>gi|429965950|gb|ELA47947.1| hypothetical protein VCUG_00530 [Vavraia culicis 'floridensis']
Length = 88
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M++++FL L N+ ++IE K T V G ++ VD MN HL L K+ V ++ V
Sbjct: 1 MQIIQFLRTLKNKQLTIETKEKTTVKGILSKVDKKMNLHL----LDATVKDEV-IESYFV 55
Query: 61 RGNNIRYYILPDS 73
+G IRY I+ +S
Sbjct: 56 KGTRIRYIIVEES 68
>gi|147809809|emb|CAN60390.1| hypothetical protein VITISV_006493 [Vitis vinifera]
Length = 133
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 43/92 (46%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V +ELK+G + G++ + N L+ + T+K L+H+ +RG
Sbjct: 10 VKLLHEAAGHVVXVELKSGELYRGSMIECKDNWNCQLENITFTVKDGKVSQLEHVFIRGI 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+R+ ++PD + RVK K G
Sbjct: 70 KVRFMVIPDMRKNAPMFKRLDARVKGKGSALG 101
>gi|358055777|dbj|GAA98122.1| hypothetical protein E5Q_04805 [Mixia osmundae IAM 14324]
Length = 128
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 9/104 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
+ L + ++IELK G G + + ++N + + +T + LD + +RG
Sbjct: 9 CKLLHESVGHVITIELKTGQTYRGKLLDAEDNLNISMSQITVTQRDGRVTQLDQVYIRGP 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA--GRPVGRGRGRG 105
I ++I+PD ++ P K + P A GR +G RGR
Sbjct: 69 MINFFIVPD-------MLAHAPMFKRQGPNALKGRGIGTARGRA 105
>gi|453087211|gb|EMF15252.1| Sm-like ribonucleo protein, partial [Mycosphaerella populorum
SO2202]
Length = 115
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 52/108 (48%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN L+ + +T + +LD + +RG+
Sbjct: 9 IKLLNEATGHQVTVEIDSGQTYRGKLIEAEDNMNVQLENINVTQRDGRVTHLDRVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
++R +I+PD ++ P + + RGRG G RGR
Sbjct: 69 HVRLFIVPD-------MLRNAPMFRSRN-------ARGRGVGLARGRA 102
>gi|320589183|gb|EFX01645.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 116
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+ +G G + + +MN LK + +T + +L+ + +RG+
Sbjct: 9 IKLLNEAQGHIVTLEITSGQTYRGRLLEAEDNMNVQLKDITVTARDGRVSHLEQVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
++R++I+PD ++ P + + RGRG G RGR
Sbjct: 69 HVRFFIVPD-------MLRNAPMFRSRNV-------RGRGVGLARGRA 102
>gi|294933185|ref|XP_002780640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239890574|gb|EER12435.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 120
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + TV++E++ G + G + + +MN + V +T K +L+ +RG+
Sbjct: 8 IKLLHESVGHTVTVEMQTGELYRGHLIHTEDNMNLLIAEVVVTRKDGKQTSLEQAYIRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVG 99
IRY ++PD+L P KP++ AG G
Sbjct: 68 KIRYIVVPDNLRY-------APMFKPRRQGAGSGWG 96
>gi|432888006|ref|XP_004075020.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like, partial
[Oryzias latipes]
Length = 117
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKP-KKPTAGRPVGRG-----RGRGRGRGRGRG 113
IR+ ILPD +++ P +K K G GRG + +G + +GRG
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMKNKNQGSGAGRGKAAILKAQGAAKEKGRG 115
>gi|403224047|dbj|BAM42177.1| snRNP protein [Theileria orientalis strain Shintoku]
Length = 119
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V+IEL+N + GT+T V+ +MN L+ V +T K + L+ + +RG
Sbjct: 7 VKLLYEGIGHIVTIELQNSNLYRGTLTNVEDNMNCLLEGVTMTTKDGRTLALEQVYLRGA 66
Query: 64 NIRYYILPDSL 74
I + I PD L
Sbjct: 67 QILFMIFPDML 77
>gi|345327225|ref|XP_001510929.2| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Ornithorhynchus anatinus]
Length = 203
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L + ++++++ ++ G + VD MN L V T + V LD L V G
Sbjct: 17 LVILLQGLVGQVTTVDMRDESLARGRVANVDAFMNIRLDQVTYTDRWGREVQLDDLFVAG 76
Query: 63 NNIRYYILPDSLNLETLL 80
++RY +PD +++ +
Sbjct: 77 RSVRYVHIPDGVDIAATI 94
>gi|225714524|gb|ACO13108.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290462385|gb|ADD24240.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
gi|290563060|gb|ADD38924.1| Small nuclear ribonucleoprotein Sm D3 [Lepeophtheirus salmonis]
Length = 138
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E NG + G + + +MN + +V +T + + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETINGEVYRGRLIEAEDNMNCQMSSVSVTHRDGHVSQLENIYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGR--------GRGRGR 108
IR+ ILPD L + + R + P + GRG+ RGRGR
Sbjct: 67 KIRFMILPDMLK-NAPMFKNMGRGRGSAPAS---AGRGKSAILREQAARGRGR 115
>gi|410911580|ref|XP_003969268.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like [Takifugu
rubripes]
Length = 135
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L E +++L+N G I VD MN L+ V + NL L V G
Sbjct: 30 LVVLLQGLQGEVTTVDLRNECTARGRIINVDAFMNIRLEAVLYRDRRGQIANLQDLFVTG 89
Query: 63 NNIRYYILPDSLNLETLLVEETPRVK 88
N+RY +PD +++ + + R++
Sbjct: 90 RNVRYVHIPDHVDIMRTIQTQLARIR 115
>gi|326933035|ref|XP_003212615.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like
[Meleagris gallopavo]
Length = 123
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L+ +++L++ + G + VD MN L V T + LD + V G
Sbjct: 17 LVILLQGLHGHVTTVDLRDESTATGRVANVDAFMNMRLAQVTFTDRRGVVSQLDEIFVAG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGR 100
N+RY +PD +++ + + + + GR GR
Sbjct: 77 RNVRYVHIPDQVDIRATIERQLQAIHRVRYFGGRDKGR 114
>gi|281201415|gb|EFA75627.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 157
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV-NLDHLSVRGNNIRYYILPDS 73
+ +ELKNG +G + D MN +LK V T K + L +RGN I+Y +PD
Sbjct: 15 IMVELKNGETFNGYLVNCDNWMNINLKNVIRTSKDSDKFWKLQSCYIRGNTIKYISVPDE 74
Query: 74 LNLETLLVEETPRVKPKKPTAG 95
+ ++VEE VK +P +
Sbjct: 75 --IIDMVVEEEQVVKQHQPASS 94
>gi|258575267|ref|XP_002541815.1| SNP3 protein [Uncinocarpus reesii 1704]
gi|237902081|gb|EEP76482.1| SNP3 protein [Uncinocarpus reesii 1704]
Length = 1064
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGN 63
F L N TV IELKN + GT+ VD +N L +++ K P ++ ++ +RG+
Sbjct: 922 FFKTLTNHTVIIELKNDIRIRGTLKSVDQYLNVKLDDIEVIDLDKYPHLSSVKNIFIRGS 981
Query: 64 NIRYYILPDSLNLETLLVEETPR 86
+RY +LP LL + T R
Sbjct: 982 VVRYIVLPQEAVDRGLLEDATRR 1004
>gi|452987425|gb|EME87180.1| hypothetical protein MYCFIDRAFT_212793 [Pseudocercospora fijiensis
CIRAD86]
Length = 1055
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 51/96 (53%), Gaps = 5/96 (5%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N V++ELKN + GT+ VD +N L + + + P ++ ++
Sbjct: 936 MLFFSFFKTLVNHEVTVELKNDISIRGTLKSVDQYLNIKLDDISVVDEMSYPHLSSVKNV 995
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR--VKPKKP 92
+RG+ +RY LP + ++T L+E+ R +P+KP
Sbjct: 996 FIRGSVVRYVHLP-AAAVDTPLLEDATRREQRPRKP 1030
>gi|213624559|gb|AAI71268.1| hypothetical protein LOC548997 [Xenopus (Silurana) tropicalis]
Length = 121
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L+ ++EL++ + GTIT VD MN L V + + LD L V G
Sbjct: 17 LIILLQGLHGHVTTVELRDESSATGTITNVDAFMNIRLAKVTYRDRRERETELDDLFVTG 76
Query: 63 NNIRYYILPDSLNL 76
NIRY +P+ +++
Sbjct: 77 RNIRYVHIPEEVDV 90
>gi|357631535|gb|EHJ79005.1| hypothetical protein KGM_15381 [Danaus plexippus]
Length = 130
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + V +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK--KPTAGR 96
IR+ ILPD +++ P K + KPTAGR
Sbjct: 67 KIRFLILPD-------MLKNAPMFKRQGNKPTAGR 94
>gi|444314147|ref|XP_004177731.1| hypothetical protein TBLA_0A04160 [Tetrapisispora blattae CBS
6284]
gi|387510770|emb|CCH58212.1| hypothetical protein TBLA_0A04160 [Tetrapisispora blattae CBS
6284]
Length = 100
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + VS+EL NG G + + +MN L+ V +T +D + VRG+
Sbjct: 6 IKLLSEAQGHIVSLELINGETYKGRLVESEDNMNVQLQDVLVTGTDSKQSRMDQVFVRGS 65
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
+IR+++LP L + L + P+ K P G
Sbjct: 66 HIRFFVLPSMLQ-KAPLFKTGPQSKQLPPVRG 96
>gi|303311569|ref|XP_003065796.1| U6 snRNA-associated Sm-like protein LSm2 , putative [Coccidioides
posadasii C735 delta SOWgp]
gi|240105458|gb|EER23651.1| U6 snRNA-associated Sm-like protein LSm2 , putative [Coccidioides
posadasii C735 delta SOWgp]
Length = 98
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N TV IELKN + G + VD +N L +++ K P HLS
Sbjct: 1 MLFFSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
+RG+ +RY +LP LL + T R + R
Sbjct: 57 VKNIFIRGSVVRYIVLPQEAVDRALLEDATRREAASQANKAR 98
>gi|430813206|emb|CCJ29431.1| unnamed protein product [Pneumocystis jirovecii]
Length = 639
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 55/111 (49%), Gaps = 13/111 (11%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLT-LKGKNPVNLDHLSVRGNNIRYYILPDS-L 74
+ELKNG +G + D MN LK V T G L +RG+ I+Y +PD +
Sbjct: 526 VELKNGETYNGHMVSCDTWMNLILKEVIQTNADGDRFFRLSECYIRGSTIKYLRIPDEII 585
Query: 75 NLETLLVEETPRVKPKKPTA--GRPVGRGRGRG----RGRG-----RGRGR 114
N+ L E+ + ++ + GR + GRGRG +GRG RGRGR
Sbjct: 586 NIVKLQNEQNRDNRSQRGISRGGRGINLGRGRGMQNIQGRGGRTSDRGRGR 636
>gi|145510771|ref|XP_001441315.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408561|emb|CAK73918.1| unnamed protein product [Paramecium tetraurelia]
Length = 363
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72
V++ELK G + G + + +MN L V++ + P++L+ + +RG+ IR+ ++PD
Sbjct: 18 VTVELKTGEMFTGYMAEAEDTMNVRLDEVQMVTRDGRPMSLEQVYLRGSQIRFVVIPD 75
>gi|170578381|ref|XP_001894384.1| Probable U6 snRNA-associated Sm-like protein LSm4 [Brugia malayi]
gi|158599053|gb|EDP36777.1| Probable U6 snRNA-associated Sm-like protein LSm4, putative [Brugia
malayi]
Length = 163
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N + +ELKNG +G + D MN HL+ T + G + + + VRG+ I+Y
Sbjct: 43 QNHPMLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLR 102
Query: 70 LPDSLNLETLLVEETPRVKPKKPTAGRP 97
+PD ++ L+ EE V+ ++ R
Sbjct: 103 IPD--DVVELVKEEVKEVRRQQKDQQRA 128
>gi|449273124|gb|EMC82732.1| U7 snRNA-associated Sm-like protein LSm10 [Columba livia]
Length = 123
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 46/98 (46%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L +++L++ + G +T VD MN L V T + +LD L V G
Sbjct: 17 LVILLQGLRGLVTTVDLRDESTATGRVTNVDAFMNVRLAEVTYTDRQGAVSHLDELFVTG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGR 100
N+RY +PD +++ + + + + GR GR
Sbjct: 77 RNVRYVHIPDEVDIRATIERQLQIIHRVRYFGGRDKGR 114
>gi|403213468|emb|CCK67970.1| hypothetical protein KNAG_0A02810 [Kazachstania naganishii CBS
8797]
Length = 100
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V +EL G G + G + +MN L V +T + ++H+ VRG+
Sbjct: 5 IKLLQEAQGHIVDLELHTGETYRGRLIGSEDNMNVQLGDVTVTKVDGSRTTMEHVFVRGS 64
Query: 64 NIRYYILPDSL 74
+R++ LPD L
Sbjct: 65 QVRFFTLPDML 75
>gi|452848080|gb|EME50012.1| hypothetical protein DOTSEDRAFT_68763 [Dothistroma septosporum
NZE10]
Length = 101
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N V++ELKN + GT+ VD +N L V + + K P HLS
Sbjct: 1 MLFFSFFKTLVNHEVTVELKNDISIRGTLKSVDQYLNIKLDDVSVVEELKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+RG+ +RY LP ++ ++T L+E+ R + + A
Sbjct: 57 VKNVFIRGSVVRYVHLP-AVAVDTPLLEDATRREASQTAA 95
>gi|387019547|gb|AFJ51891.1| U7 snRNP-specific Sm-like protein LSM10 [Crotalus adamanteus]
Length = 125
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L++ ++EL++ ++ G I VD MN L T + L L + G
Sbjct: 17 LVLLLQGLHSRVTTVELRDESVAVGRIVNVDAFMNVRLGEATFTDRHGCACRLQDLFITG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +++ +E+ ++ + T G RG+GR
Sbjct: 77 RNVRYVHIPDEVDIRA-TIEQQLQLIHRVRTFG---DRGKGR 114
>gi|390597253|gb|EIN06653.1| Sm-like ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 130
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTV-KLTLKGKNPVNLDHLSVRG 62
+ L N+ + +ELKNG +G + D MN L+ V + + G+ L +RG
Sbjct: 4 LSLLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSADGERFWKLKECYIRG 63
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRG 107
+ I+Y +PD+L L+ + E+T + + G V GRG GRG
Sbjct: 64 STIKYLRVPDTL-LDAVKEEQTRAREAGRSARGSHVSGGRG-GRG 106
>gi|62858991|ref|NP_001016243.1| LSM10, U7 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|89267482|emb|CAJ81542.1| LSM10, U7 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|189441581|gb|AAI67319.1| LOC548997 protein [Xenopus (Silurana) tropicalis]
Length = 121
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L+ ++EL++ + GTIT VD MN L V + + LD L + G
Sbjct: 17 LIILLQGLHGHVTTVELRDESSATGTITNVDAFMNIRLAKVTYRDRRERETELDDLFITG 76
Query: 63 NNIRYYILPDSLNL 76
NIRY +P+ +++
Sbjct: 77 RNIRYVHIPEEVDV 90
>gi|294874372|ref|XP_002766923.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|294881753|ref|XP_002769480.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239868298|gb|EEQ99640.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
gi|239872939|gb|EER02198.1| Small nuclear ribonucleoprotein Sm D3, putative [Perkinsus
marinus ATCC 50983]
Length = 119
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 48/96 (50%), Gaps = 7/96 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + TV++E++ G + G + + +MN + V +T + +L+ +RG+
Sbjct: 8 IKLLHESVGHTVTVEMQTGELYRGHLIHTEDNMNLLIAEVVVTRRDGKQTSLEQAYIRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVG 99
IRY ++PD+L P KP++ AG G
Sbjct: 68 KIRYIVVPDNLRY-------APMFKPRRQGAGSGWG 96
>gi|225683183|gb|EEH21467.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N TV++ELKN + GT+ VD +N L +++ + P ++ ++
Sbjct: 1 MLFFSFFKTLTNHTVTVELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDQYPHLSSVKNI 60
Query: 59 SVRGNNIRYYILPDS 73
VRG+ +RY +LP +
Sbjct: 61 FVRGSVVRYVVLPQA 75
>gi|354492024|ref|XP_003508152.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cricetulus
griseus]
Length = 126
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRG---RGRGRG 113
IR+ ILPD +++ P +K K + G G GRG+ + +G+G
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK---NKNQGSGAGRGKAAILKAQGKG 109
>gi|323447696|gb|EGB03608.1| hypothetical protein AURANDRAFT_8431 [Aureococcus anophagefferens]
Length = 118
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 3/93 (3%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
V+IE KNG G + + +MN LK T N ++H+ +RG+ I ++I P+ L
Sbjct: 18 VTIECKNGDTYRGFLDETEDNMNCVLKDATRTDAKGNKSQVEHIFLRGSQIAFFIFPNML 77
Query: 75 NLETLL--VEETPRVKPKKPTAGRPVGRGRGRG 105
+ V + K K AG P G RG+
Sbjct: 78 KKAPMFNRVRAWRKTKATKK-AGAPSGTVRGQA 109
>gi|324540294|gb|ADY49583.1| Small nuclear ribonucleoprotein Sm D3, partial [Ascaris suum]
Length = 143
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 12/113 (10%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E G + G + + +MN + V +T + LD++ +RG+
Sbjct: 8 IKILHEAEGHIVTLETTIGEVYRGKLIEAEDNMNCQMSDVNVTYRDGRTHQLDNVFIRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVK----PKKPTAGRPVGRGR-GRGRGRGRG 111
IR+ ILPD +++ P K +K G +G R GR RGRG
Sbjct: 68 KIRFMILPD-------MLKNAPMFKNIGRAQKGAVGMGMGDNRDGRAAFRGRG 113
>gi|254567285|ref|XP_002490753.1| Core Sm protein Sm D3 [Komagataella pastoris GS115]
gi|238030549|emb|CAY68473.1| Core Sm protein Sm D3 [Komagataella pastoris GS115]
Length = 100
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +S EL +G G + + SMN LK V LT + +++ + +RG+
Sbjct: 7 VKLLNEAQGHIISAELTSGESYRGKLVESEDSMNIQLKDVTLTAQDGKVSHMEQIFIRGS 66
Query: 64 NIRYYILPDSL-NLETLLVEETPRVKPKKPTAG 95
IR++ +P+ L N ET KP+ P G
Sbjct: 67 QIRFFSVPEILKNAPIFNANET---KPQAPIRG 96
>gi|270008821|gb|EFA05269.1| hypothetical protein TcasGA2_TC015424 [Tribolium castaneum]
Length = 152
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
IR+ ILPD L + ++T K TAGR
Sbjct: 67 KIRFLILPDMLKNAPMFKKQT-----KAGTAGR 94
>gi|291231092|ref|XP_002735494.1| PREDICTED: LSM10, U7 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 114
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 47/101 (46%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L L ++ IEL+N + V G I VD MN + V+ + L + V+G
Sbjct: 14 LICLLQALTGKSTVIELRNESTVTGVIDSVDAYMNVFMSDVEFVNADGQVMILSNFFVQG 73
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
IR+ +PD +N+ T + + + ++ R V + +
Sbjct: 74 KMIRFVQIPDEVNIVTAIKSQLSSWQERRTRKERVVRKKKS 114
>gi|432882999|ref|XP_004074183.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 1
[Oryzias latipes]
gi|432883001|ref|XP_004074184.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 2
[Oryzias latipes]
Length = 134
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 47/104 (45%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
+V L L E +++L++ + G + VD MN LK V + L L + G
Sbjct: 29 MVVLLQGLQGEVTTVDLRDESSARGLVLNVDAFMNIRLKDVLFLDRRGQTAQLQDLFITG 88
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGR 106
N+RY +PD +++ + + ++ + AG GR GR
Sbjct: 89 RNVRYVHIPDHVDIMKTMESQLAKIHRVRNFAGEGGGRKEFGGR 132
>gi|426197631|gb|EKV47558.1| hypothetical protein AGABI2DRAFT_68745 [Agaricus bisporus var.
bisporus H97]
Length = 101
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 1 MKLVRFLMK-LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDH 57
M+L+ + K L ++TV++ELKN + G + VD +N L +K++ + ++P + + +
Sbjct: 1 MQLIFSVFKTLTDQTVTVELKNDLSITGVLKSVDQFLNIRLDNIKVSDENRHPHMMAVKN 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + +++T L+E+ R
Sbjct: 61 CFIRGSVVRYVQLP-AEHVDTQLLEDATR 88
>gi|409080718|gb|EKM81078.1| hypothetical protein AGABI1DRAFT_36837 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 101
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 55/89 (61%), Gaps = 4/89 (4%)
Query: 1 MKLVRFLMK-LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDH 57
M+L+ + K L ++TV++ELKN + G + VD +N L +K++ + ++P + + +
Sbjct: 1 MQLIFSVFKTLTDQTVTVELKNDLSITGVLKSVDQFLNIRLDNIKVSDENRHPHMMAVKN 60
Query: 58 LSVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + +++T L+E+ R
Sbjct: 61 CFIRGSVVRYVQLP-AEHVDTQLLEDATR 88
>gi|121716437|ref|XP_001275808.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
clavatus NRRL 1]
gi|119403965|gb|EAW14382.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
clavatus NRRL 1]
Length = 98
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N+TV+IELKN + GT+ VD +N L V + K P ++ ++
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++ L+E+ R
Sbjct: 61 FIRGSVVRYVMLPRS-EVDVGLLEDATR 87
>gi|308158808|gb|EFO61372.1| SnRNP Sm-like protein, putative [Giardia lamblia P15]
Length = 95
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSV 60
M+L+R + KL + V ELK G ++ GT+ VD + HL T +G L+V
Sbjct: 1 MQLIRLVQKLQGQRVRFELKAGGVIEGTVALVDATFVVHLSQASYTPRGATTAICHPLAV 60
Query: 61 -RGNNIRYYILPDSLNLETLLV 81
RG + LP + + + L
Sbjct: 61 LRGAAVCSLSLPGTFDTDAHLC 82
>gi|342180491|emb|CCC89967.1| putative small nuclear ribonucleoprotein SmD3 [Trypanosoma
congolense IL3000]
Length = 115
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 14/102 (13%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
TVS+ELKNG + GT++ + +M L + + T V++ + V G NI ++ LPD+
Sbjct: 18 TVSLELKNGELYTGTLSELVENMGVVLTSARKTTMAGREVDMPTVLVSGKNIVFFQLPDA 77
Query: 74 LNLETLLVEETPRVKPKKPTAGRPVGRG---RGRGRGRGRGR 112
L + P T GR V RG G+G G R
Sbjct: 78 L-----------QASPALLTVGRVVSSSLDDRGGGKGFGAQR 108
>gi|154414287|ref|XP_001580171.1| Sm protein [Trichomonas vaginalis G3]
gi|121914386|gb|EAY19185.1| Sm protein [Trichomonas vaginalis G3]
Length = 119
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
++ L + + V+IE K G + GT+ G + +MN L V T + D + +RG
Sbjct: 11 VIAILHEADGFVVTIETKQGEMYRGTLFGSEDTMNVELHDVTYTNSKGVDSHKDKVYIRG 70
Query: 63 NNIRYYILPDSLNLETLLVEE 83
+NI +++LPD + ++E
Sbjct: 71 SNIVFFVLPDMFANAPMFIDE 91
>gi|21703324|gb|AAM76159.1|AF483079_1 U7 snRNP-specific SM-like protein [Boltenia villosa]
Length = 100
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 37/61 (60%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+++E+KN T + GT+ VD MN +K K++ ++ + + V+ +N RY +LP+ +
Sbjct: 27 ITVEMKNDTTITGTLXCVDGFMNMFMKKAKISSCNGTSMSAERIHVKASNTRYIMLPNDV 86
Query: 75 N 75
N
Sbjct: 87 N 87
>gi|449297262|gb|EMC93280.1| hypothetical protein BAUCODRAFT_75741 [Baudoinia compniacensis UAMH
10762]
Length = 1058
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N+ V++ELKN + GT+ VD +N L + + + K P ++ ++
Sbjct: 926 MLFFSFFKTLVNQEVTVELKNDISIRGTLKSVDQYLNIKLDDISVVEEMKYPHLSSVKNV 985
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + ++T L+E+ R
Sbjct: 986 FIRGSVVRYVHLP-AAAVDTPLLEDATR 1012
>gi|260837085|ref|XP_002613536.1| hypothetical protein BRAFLDRAFT_114009 [Branchiostoma floridae]
gi|229298921|gb|EEN69545.1| hypothetical protein BRAFLDRAFT_114009 [Branchiostoma floridae]
Length = 120
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E G + G + + +MN + + +T + L+H+ +RG+
Sbjct: 7 IKVLHEAEGHIVTLETTTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLEHVFIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFMILPDML 77
>gi|8778615|gb|AAF79623.1|AC027665_24 F5M15.9 [Arabidopsis thaliana]
Length = 207
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 57/136 (41%), Gaps = 33/136 (24%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V++ELK+G + G++ + + N L+ + T K L+H+ +RG+
Sbjct: 9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGS 68
Query: 64 NI-------------------------------RYYILPDSLNLETLLVEETPRVKPKKP 92
+ R+ ++PD L + R+K K
Sbjct: 69 KVRCCTCFLVYVIHGIILVNPSCLVIDLRIYLDRFMVIPDILKHAPMFKRLDARIKGKSS 128
Query: 93 TAGRPVGRGRGRGRGR 108
+ G VGRGRG RG+
Sbjct: 129 SLG--VGRGRGAMRGK 142
>gi|448085360|ref|XP_004195840.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359377262|emb|CCE85645.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 126
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTV-KLTLKGKNPVNLDHLSVRGNNIRYYIL 70
N+ + +ELKNG ++G + D MN L V +++ G N + L VRGN+I+Y L
Sbjct: 12 NQPILVELKNGETLNGELVNCDSWMNLTLNNVIQVSANGTNFLKLPECYVRGNHIKYMRL 71
Query: 71 PDSL 74
P+ L
Sbjct: 72 PEEL 75
>gi|147768838|emb|CAN75888.1| hypothetical protein VITISV_023640 [Vitis vinifera]
Length = 3804
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 3671 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 3729
Query: 76 LETLLVEETPRVKPKKP-------------TAGRPVGRGRGRG 105
++ + E R K P ++GRP +G GRG
Sbjct: 3730 IDKVQEETKNRADRKPPGVGRGRGRGREDGSSGRP-AKGIGRG 3771
>gi|145242038|ref|XP_001393665.1| U6 snRNA-associated Sm-like protein LSm2 [Aspergillus niger CBS
513.88]
gi|134078209|emb|CAK40288.1| unnamed protein product [Aspergillus niger]
gi|358374995|dbj|GAA91582.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 98
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N+TV+IELKN + GT+ VD +N L V + K P ++ ++
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++ L+E+ R
Sbjct: 61 FIRGSVVRYVMLPRS-EVDIGLLEDATR 87
>gi|115401818|ref|XP_001216497.1| hypothetical protein ATEG_07876 [Aspergillus terreus NIH2624]
gi|114190438|gb|EAU32138.1| hypothetical protein ATEG_07876 [Aspergillus terreus NIH2624]
Length = 957
Score = 44.3 bits (103), Expect = 0.009, Method: Composition-based stats.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N+TV+IELKN + GT+ VD +N L V + K P ++ ++
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++ L+E+ R
Sbjct: 61 FIRGSVVRYVMLPRS-EVDIGLLEDATR 87
>gi|225554412|gb|EEH02710.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
G186AR]
gi|240273447|gb|EER36967.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
Length = 98
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F + N TV+IELKN + GT+ VD +N L +++ + P HLS
Sbjct: 1 MLFFSFFKTITNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDS 73
VRG+ +RY +LP +
Sbjct: 57 VKNIFVRGSVVRYIVLPQA 75
>gi|339251454|ref|XP_003372749.1| putative LSM domain protein [Trichinella spiralis]
gi|316968905|gb|EFV53105.1| putative LSM domain protein [Trichinella spiralis]
Length = 133
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V +E G + G + + +MN ++ V +T + ++ + +RG+
Sbjct: 7 LKILHEAEGHIVMLETTTGEVFRGKLLEAEDNMNCNMTDVTVTYRDGQVAQMEQVYIRGS 66
Query: 64 NIRYYILPDSLN----LETLL-----VEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRG 113
IR+ ILPD L T+L V PR K + GRGRG GRG
Sbjct: 67 KIRFLILPDMLKNAPMFRTMLKGVPKVPAPPRGKAAAFKSKMFCHFKGGRGRGVFSGRG 125
>gi|339251460|ref|XP_003372752.1| putative LSM domain protein [Trichinella spiralis]
gi|316968894|gb|EFV53095.1| putative LSM domain protein [Trichinella spiralis]
Length = 133
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V +E G + G + + +MN ++ V +T + +D + +RG+
Sbjct: 7 LKILHEAEGHIVMLETTTGEVFRGKLLEAEDNMNCNMTDVTVTYRDGQVTQMDQVYIRGS 66
Query: 64 NIRYYILPDSLN----LETLL-----VEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRG 113
IR+ ILPD L +T+L V PR K + GRGRG RG
Sbjct: 67 KIRFLILPDMLKNAPMFKTMLKGVPKVPAPPRGKAAAFKSKMFCHFEGGRGRGVFSSRG 125
>gi|297743868|emb|CBI36838.3| unnamed protein product [Vitis vinifera]
Length = 196
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 63 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 121
Query: 76 LETLLVEETPRVKPKKP-------------TAGRPVGRGRGRG 105
++ + E R K P ++GRP +G GRG
Sbjct: 122 IDKVQEETKNRADRKPPGVGRGRGRGREDGSSGRP-AKGIGRG 163
>gi|154271292|ref|XP_001536499.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
NAm1]
gi|150409169|gb|EDN04619.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus
NAm1]
Length = 98
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 10/79 (12%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F + N TV+IELKN + GT+ VD +N L +++ + P HLS
Sbjct: 1 MLFFSFFKTITNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDS 73
VRG+ +RY +LP +
Sbjct: 57 VKNIFVRGSVVRYIVLPQA 75
>gi|47212040|emb|CAF92642.1| unnamed protein product [Tetraodon nigroviridis]
Length = 115
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L E +++L+N G I VD MN L+ V + N+ L V G
Sbjct: 12 LVVLLQGLQGEVTTVDLRNECTARGRIVSVDAFMNMRLEAVLYRDRRGQLANMQDLFVTG 71
Query: 63 NNIRYYILPDSLNL 76
N+RY +PD +++
Sbjct: 72 RNVRYVHVPDHVDM 85
>gi|351701822|gb|EHB04741.1| Small nuclear ribonucleoprotein Sm D3, partial [Heterocephalus
glaber]
Length = 136
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|148227688|ref|NP_001079359.1| uncharacterized protein LOC379046 [Xenopus laevis]
gi|27371312|gb|AAH40973.1| MGC52856 protein [Xenopus laevis]
gi|133736997|gb|AAI33764.1| MGC52856 protein [Xenopus laevis]
Length = 126
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHVVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|453089853|gb|EMF17893.1| U6 snRNA-associated Sm-like protein LSm2 [Mycosphaerella populorum
SO2202]
Length = 100
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N +++ELKN + GT+ VD +N L + + + K P HLS
Sbjct: 1 MLFFSFFKTLVNHEITVELKNDISIRGTLKSVDQYLNIKLDDISVVEELKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVG 99
+RG+ +RY LP + ++T L+E+ R + + A G
Sbjct: 57 VKNVFIRGSVVRYVHLP-AAAVDTPLLEDATRREASQTAAKAKAG 100
>gi|406607031|emb|CCH41546.1| Small nuclear ribonucleoprotein Sm D3 [Wickerhamomyces ciferrii]
Length = 95
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 7/92 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + VS+EL +G + +MN L + LT + +LDH+ +RG+
Sbjct: 7 VKLLNEAQGHIVSLELNSGETYRA-----EDNMNVQLNDITLTSRDGKVTHLDHVFIRGS 61
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
NIR++++PD L + + KP P G
Sbjct: 62 NIRFFVVPDMLRNAPMF--DPNHTKPPPPIRG 91
>gi|156365662|ref|XP_001626763.1| predicted protein [Nematostella vectensis]
gi|156213651|gb|EDO34663.1| predicted protein [Nematostella vectensis]
Length = 95
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN VHGT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKEVIVELKNDLSVHGTLDSVDQFLNLKLTDIDVTDPDKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP S ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLP-SEEVDTQLLQDATR 87
>gi|320039679|gb|EFW21613.1| LSM domain-containing protein [Coccidioides posadasii str.
Silveira]
Length = 98
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 10/102 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N TV IELKN + G + VD +N L +++ K P HLS
Sbjct: 1 MLFFSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
+RG+ +RY +LP LL + T R + R
Sbjct: 57 VKNIFIRGSVVRYIVLPQEAVDRGLLEDATRREAASQANKAR 98
>gi|298709378|emb|CBJ31311.1| Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus
siliculosus]
Length = 177
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
+++ELKNG + G + + SMN LK VK ++GK L L +RGN I + I+P+
Sbjct: 14 ITVELKNGEVCRGVLDEAEDSMNLVLKDCVKTNIRGKTS-TLQQLYIRGNQIVFCIVPNM 72
Query: 74 L 74
L
Sbjct: 73 L 73
>gi|47211785|emb|CAF93753.1| unnamed protein product [Tetraodon nigroviridis]
Length = 127
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|24652901|ref|NP_725106.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|194883784|ref|XP_001975977.1| GG20251 [Drosophila erecta]
gi|195333626|ref|XP_002033491.1| GM21338 [Drosophila sechellia]
gi|195485512|ref|XP_002091120.1| GE12410 [Drosophila yakuba]
gi|195551839|ref|XP_002076307.1| GD15400 [Drosophila simulans]
gi|13124554|sp|O44437.1|SMD3_DROME RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|2708715|gb|AAB92621.1| small nuclear ribonucleoprotein Sm D3 [Drosophila melanogaster]
gi|7303511|gb|AAF58566.1| small ribonucleoprotein particle protein SmD3 [Drosophila
melanogaster]
gi|21064481|gb|AAM29470.1| RE39820p [Drosophila melanogaster]
gi|190659164|gb|EDV56377.1| GG20251 [Drosophila erecta]
gi|194125461|gb|EDW47504.1| GM21338 [Drosophila sechellia]
gi|194177221|gb|EDW90832.1| GE12410 [Drosophila yakuba]
gi|194201956|gb|EDX15532.1| GD15400 [Drosophila simulans]
gi|220948494|gb|ACL86790.1| SmD3-PA [synthetic construct]
gi|220957770|gb|ACL91428.1| SmD3-PA [synthetic construct]
Length = 151
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN + + +T + NL+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD L P + G+G G GRG+
Sbjct: 67 KIRFLILPDMLK--------------NAPMFKKQTGKGLGGTAGRGKA 100
>gi|348513729|ref|XP_003444394.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Oreochromis
niloticus]
Length = 127
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|4759160|ref|NP_004166.1| small nuclear ribonucleoprotein Sm D3 [Homo sapiens]
gi|13385598|ref|NP_080371.1| small nuclear ribonucleoprotein Sm D3 [Mus musculus]
gi|56119060|ref|NP_001007839.1| small nuclear ribonucleoprotein Sm D3 [Gallus gallus]
gi|62859245|ref|NP_001017093.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|148230601|ref|NP_001084936.1| small nuclear ribonucleoprotein Sm D3 [Xenopus laevis]
gi|302563765|ref|NP_001180981.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|343478171|ref|NP_001230355.1| small nuclear ribonucleoprotein Sm D3 [Sus scrofa]
gi|73995845|ref|XP_849660.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Canis lupus
familiaris]
gi|109093572|ref|XP_001096170.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like isoform 1
[Macaca mulatta]
gi|109509970|ref|XP_001079870.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|126344584|ref|XP_001362481.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Monodelphis
domestica]
gi|149632566|ref|XP_001509901.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like
[Ornithorhynchus anatinus]
gi|149720126|ref|XP_001489110.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Equus
caballus]
gi|291412675|ref|XP_002722599.1| PREDICTED: small nuclear ribonucleoprotein polypeptide D3
[Oryctolagus cuniculus]
gi|296191500|ref|XP_002743645.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Callithrix
jacchus]
gi|297708452|ref|XP_002830980.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pongo
abelii]
gi|301779389|ref|XP_002925102.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Ailuropoda
melanoleuca]
gi|332263674|ref|XP_003280877.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Nomascus
leucogenys]
gi|344294995|ref|XP_003419200.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Loxodonta
africana]
gi|348584590|ref|XP_003478055.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Cavia
porcellus]
gi|392355294|ref|XP_003751996.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Rattus
norvegicus]
gi|395753126|ref|XP_003779546.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pongo
abelii]
gi|395753128|ref|XP_003779547.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 3 [Pongo
abelii]
gi|395861839|ref|XP_003803182.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Otolemur
garnettii]
gi|397469575|ref|XP_003806425.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Pan paniscus]
gi|410055702|ref|XP_003953897.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 1 [Pan
troglodytes]
gi|410055704|ref|XP_003953898.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 2 [Pan
troglodytes]
gi|410976969|ref|XP_003994885.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Felis catus]
gi|426247570|ref|XP_004017554.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Ovis aries]
gi|426393867|ref|XP_004063231.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 [Gorilla gorilla
gorilla]
gi|51338667|sp|P62318.1|SMD3_HUMAN RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|54039609|sp|P62323.1|SMD3_XENLA RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|61246343|sp|P62320.1|SMD3_MOUSE RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|315583600|pdb|3PGW|Z Chain Z, Crystal Structure Of Human U1 Snrnp
gi|315583609|pdb|3PGW|W Chain W, Crystal Structure Of Human U1 Snrnp
gi|332639436|pdb|2Y9A|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639443|pdb|2Y9A|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639450|pdb|2Y9A|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639460|pdb|2Y9B|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639467|pdb|2Y9B|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639474|pdb|2Y9B|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639484|pdb|2Y9C|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639491|pdb|2Y9C|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639498|pdb|2Y9C|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639508|pdb|2Y9D|D Chain D, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639515|pdb|2Y9D|K Chain K, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639522|pdb|2Y9D|R Chain R, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|600750|gb|AAA57034.1| Sm D3 [Homo sapiens]
gi|12653375|gb|AAH00457.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|12837822|dbj|BAB23963.1| unnamed protein product [Mus musculus]
gi|12839911|dbj|BAB24705.1| unnamed protein product [Mus musculus]
gi|12859667|dbj|BAB31729.1| unnamed protein product [Mus musculus]
gi|13111955|gb|AAH03150.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|47122949|gb|AAH70616.1| MGC81359 protein [Xenopus laevis]
gi|47678697|emb|CAG30469.1| SNRPD3 [Homo sapiens]
gi|53130412|emb|CAG31535.1| hypothetical protein RCJMB04_7j2 [Gallus gallus]
gi|74227850|dbj|BAE35738.1| unnamed protein product [Mus musculus]
gi|89266931|emb|CAJ81806.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Xenopus
(Silurana) tropicalis]
gi|90085617|dbj|BAE91549.1| unnamed protein product [Macaca fascicularis]
gi|109451504|emb|CAK54613.1| SNRPD3 [synthetic construct]
gi|109452100|emb|CAK54912.1| SNRPD3 [synthetic construct]
gi|119580074|gb|EAW59670.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Homo sapiens]
gi|148699966|gb|EDL31913.1| small nuclear ribonucleoprotein D3, isoform CRA_b [Mus musculus]
gi|149043764|gb|EDL97215.1| rCG60635, isoform CRA_b [Rattus norvegicus]
gi|170285144|gb|AAI61305.1| hypothetical protein LOC549847 [Xenopus (Silurana) tropicalis]
gi|197129341|gb|ACH45839.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129342|gb|ACH45840.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197129343|gb|ACH45841.1| putative small nuclear ribonucleoprotein D3 polypeptide 18 kDa
variant 2 [Taeniopygia guttata]
gi|197692199|dbj|BAG70063.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|197692447|dbj|BAG70187.1| small nuclear ribonucleoprotein polypeptide D3 [Homo sapiens]
gi|208965532|dbj|BAG72780.1| small nuclear ribonucleoprotein D3 polypeptide [synthetic
construct]
gi|296478296|tpg|DAA20411.1| TPA: small nuclear ribonucleoprotein D3 polypeptide 18kDa [Bos
taurus]
gi|355563528|gb|EHH20090.1| hypothetical protein EGK_02876 [Macaca mulatta]
gi|355784846|gb|EHH65697.1| hypothetical protein EGM_02515 [Macaca fascicularis]
gi|380815844|gb|AFE79796.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815846|gb|AFE79797.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815848|gb|AFE79798.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815850|gb|AFE79799.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|380815852|gb|AFE79800.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|383420997|gb|AFH33712.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|384940658|gb|AFI33934.1| small nuclear ribonucleoprotein Sm D3 [Macaca mulatta]
gi|387018114|gb|AFJ51175.1| Small nuclear ribonucleoprotein D3 polypeptide [Crotalus
adamanteus]
gi|410211528|gb|JAA02983.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264204|gb|JAA20068.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410264206|gb|JAA20069.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|410302836|gb|JAA30018.1| small nuclear ribonucleoprotein D3 polypeptide 18kDa [Pan
troglodytes]
gi|417395981|gb|JAA45024.1| Putative small nuclear ribonucleoprotein sm d3 [Desmodus rotundus]
gi|432095017|gb|ELK26406.1| Small nuclear ribonucleoprotein Sm D3 [Myotis davidii]
gi|449281570|gb|EMC88617.1| Small nuclear ribonucleoprotein Sm D3 [Columba livia]
Length = 126
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|156402297|ref|XP_001639527.1| predicted protein [Nematostella vectensis]
gi|156226656|gb|EDO47464.1| predicted protein [Nematostella vectensis]
Length = 110
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 44/93 (47%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E NG + G + + +MN + + +T + L+ + VRG+
Sbjct: 7 IKILHEAEGHVITLETLNGEVYRGKLIEAEDNMNCQMSNITVTARDGRVSQLEQVFVRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
IR+ ILPD L + + T + AGR
Sbjct: 67 KIRFLILPDMLKNAPMFKKMTQKGSSGTGAAGR 99
>gi|444708595|gb|ELW49650.1| Small nuclear ribonucleoprotein Sm D3 [Tupaia chinensis]
Length = 112
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|397569438|gb|EJK46745.1| hypothetical protein THAOC_34574 [Thalassiosira oceanica]
Length = 849
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L +++ELKN ++ GT+ VD +N L +V++ + + P V L +
Sbjct: 753 MLFFSFFKTLVGREIAVELKNDVVLTGTLHSVDQYLNIKLTSVRVVNQDRYPQLVALKNC 812
Query: 59 SVRGNNIRYY-ILPDSLNLETL 79
+RG+ +RY I P +N E L
Sbjct: 813 FIRGSVVRYVQITPSDVNTELL 834
>gi|255076339|ref|XP_002501844.1| predicted protein [Micromonas sp. RCC299]
gi|226517108|gb|ACO63102.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + + VRGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVSCDTWMNVHLREVICTSKDGDRFWRMANCYVRGNTIKYICVPDEV 75
>gi|410932149|ref|XP_003979456.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like, partial
[Takifugu rubripes]
gi|281343886|gb|EFB19470.1| hypothetical protein PANDA_014546 [Ailuropoda melanoleuca]
Length = 106
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|401882879|gb|EJT47119.1| prenyltransferase [Trichosporon asahii var. asahii CBS 2479]
Length = 803
Score = 43.9 bits (102), Expect = 0.012, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRG 62
RF L ++ +++ELKN + GT+ VD +N L +++ K P + + ++ +RG
Sbjct: 14 RFFKTLTDQVITVELKNDLCITGTLKSVDQFLNIRLDGIRVEDPEKYPHMLAVKNVFIRG 73
Query: 63 NNIRYYILPDSLNLETLLVEETPR 86
+ +RY +P + ++T L+E+ R
Sbjct: 74 SVVRYVRMP-ARTVDTTLLEDATR 96
>gi|194382308|dbj|BAG58909.1| unnamed protein product [Homo sapiens]
Length = 120
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|440901202|gb|ELR52187.1| Small nuclear ribonucleoprotein Sm D3, partial [Bos grunniens
mutus]
Length = 107
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|159116502|ref|XP_001708472.1| SnRNP Sm-like protein, putative [Giardia lamblia ATCC 50803]
gi|157436584|gb|EDO80798.1| SnRNP Sm-like protein, putative [Giardia lamblia ATCC 50803]
Length = 95
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK-NPVNLDHLS 59
M+L+R + KL + V ELK G ++ GT+ VD + HL T +G + +
Sbjct: 1 MQLIRLVQKLQGQRVRFELKAGGMIEGTVALVDATFVVHLSQASYTPRGATTAICHPFVV 60
Query: 60 VRGNNIRYYILPDSLNLETLLV 81
+RG I LP + + +T L
Sbjct: 61 LRGAAICSLSLPGTFDTDTHLC 82
>gi|443687679|gb|ELT90579.1| hypothetical protein CAPTEDRAFT_221674 [Capitella teleta]
Length = 135
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 14/109 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E +G + G + + +MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETTSGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENVFIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGR 112
IR+ ILPD L P R VG+G G GRG+
Sbjct: 67 KIRFLILPDMLK--------------NAPMFKRVVGKGGHPGATAGRGK 101
>gi|170584340|ref|XP_001896959.1| Sm protein [Brugia malayi]
gi|158595648|gb|EDP34187.1| Sm protein [Brugia malayi]
Length = 116
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 7 LMKLNNETVSIELKNGTIVHGTITGVDISMNTHLK--TVKLTLKGKNPVNLDHLSVRGNN 64
L + +V +ELKN + VHG + G D +MN +K TV + + P++ D ++G
Sbjct: 22 LQAMEGSSVVVELKNYSTVHGILAGCDDAMNIEMKAVTVHDSKRYSAPLHCDSFYIQGKF 81
Query: 65 IRY 67
IR+
Sbjct: 82 IRF 84
>gi|395753131|ref|XP_003779548.1| PREDICTED: small nuclear ribonucleoprotein Sm D3 isoform 4 [Pongo
abelii]
Length = 120
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|238488709|ref|XP_002375592.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
flavus NRRL3357]
gi|317136870|ref|XP_003189990.1| U6 snRNA-associated Sm-like protein LSm2 [Aspergillus oryzae
RIB40]
gi|220697980|gb|EED54320.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
flavus NRRL3357]
Length = 98
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N+TV IELKN + GT+ VD +N L V + K P ++ ++
Sbjct: 1 MLFFSFFKTLTNQTVIIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++ L+E+ R
Sbjct: 61 FIRGSVVRYVVLPRS-EVDVGLLEDATR 87
>gi|448080879|ref|XP_004194749.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
gi|359376171|emb|CCE86753.1| Piso0_005263 [Millerozyma farinosa CBS 7064]
Length = 130
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 12 NETVSIELKNGTIVHGTITGVDISMNTHL-KTVKLTLKGKNPVNLDHLSVRGNNIRYYIL 70
N+ + +ELKNG ++G + D MN L V+++ G N + L VRGN+I+Y L
Sbjct: 12 NQPILVELKNGETLNGELVNCDSWMNLTLNNVVQVSENGTNFLKLPECYVRGNHIKYMRL 71
Query: 71 PDSL 74
P+ L
Sbjct: 72 PEEL 75
>gi|119194065|ref|XP_001247636.1| hypothetical protein CIMG_01407 [Coccidioides immitis RS]
gi|392863119|gb|EAS36171.2| small nuclear ribonucleoprotein LSM2 [Coccidioides immitis RS]
Length = 178
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N TV IELKN + G + VD +N L +++ K P ++ ++
Sbjct: 81 MLFFSFFKTLTNHTVIIELKNDIRIRGILKSVDQYLNIKLDDIEVIDLDKYPHLSSVKNI 140
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
+RG+ +RY +LP LL + T R + R
Sbjct: 141 FIRGSVVRYIVLPQEAVDRGLLEDATRREAASQANKAR 178
>gi|195455442|ref|XP_002074722.1| GK23009 [Drosophila willistoni]
gi|194170807|gb|EDW85708.1| GK23009 [Drosophila willistoni]
Length = 150
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN + + +T + NL+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD L P + G+G G GRG+
Sbjct: 67 KIRFLILPDMLK--------------NAPMFKKQTGKGLGGTAGRGKA 100
>gi|195384527|ref|XP_002050966.1| GJ19907 [Drosophila virilis]
gi|194145763|gb|EDW62159.1| GJ19907 [Drosophila virilis]
Length = 151
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN + + +T + NL+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD L P + G+G G GRG+
Sbjct: 67 KIRFLILPDMLK--------------NAPMFKKQTGKGLGGTAGRGKA 100
>gi|195030021|ref|XP_001987867.1| GH19718 [Drosophila grimshawi]
gi|195120652|ref|XP_002004838.1| GI20137 [Drosophila mojavensis]
gi|193903867|gb|EDW02734.1| GH19718 [Drosophila grimshawi]
gi|193909906|gb|EDW08773.1| GI20137 [Drosophila mojavensis]
Length = 151
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN + + +T + NL+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTANLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD L P + G+G G GRG+
Sbjct: 67 KIRFLILPDMLK--------------NAPMFKKQTGKGLGGTAGRGKA 100
>gi|71002350|ref|XP_755856.1| small nuclear ribonucleoprotein (LSM2) [Aspergillus fumigatus
Af293]
gi|119481913|ref|XP_001260985.1| small nuclear ribonucleoprotein (LSM2), putative [Neosartorya
fischeri NRRL 181]
gi|66853494|gb|EAL93818.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
fumigatus Af293]
gi|119409139|gb|EAW19088.1| small nuclear ribonucleoprotein (LSM2), putative [Neosartorya
fischeri NRRL 181]
gi|159129913|gb|EDP55027.1| small nuclear ribonucleoprotein (LSM2), putative [Aspergillus
fumigatus A1163]
Length = 91
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N+TV+IELKN + GT+ VD +N L V + K P ++ ++
Sbjct: 1 MLFFSFFKTLTNQTVTIELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++ L+E+ R
Sbjct: 61 FIRGSVVRYVMLPRS-EVDVGLLEDATR 87
>gi|331243742|ref|XP_003334513.1| U6 snRNA-associated Sm-like protein LSm2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309313503|gb|EFP90094.1| U6 snRNA-associated Sm-like protein LSm2 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 96
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L + V+IELKN + GT+ VD +N L+ +K+ + ++P + + + +RG+ +RY
Sbjct: 10 LTGQEVTIELKNDLAIQGTLASVDQFLNLKLENIKVLDQERHPHMMAVKNCFIRGSVVRY 69
Query: 68 YILPDSLNLETLLVEETPRVKPKKPTAGR 96
+P + ++T L+E+ R K TA R
Sbjct: 70 VQIPKA-AVDTQLLEDATR-KEAANTAKR 96
>gi|256083180|ref|XP_002577827.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
gi|360044788|emb|CCD82336.1| U6 snrna-associated sm-like protein lsm4 [Schistosoma mansoni]
Length = 142
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRG 62
V L N + +ELK+G +G + D MN HLK V T + G + +RG
Sbjct: 4 VTLLKAATNLPMLVELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYIRG 63
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRG 113
+ I+Y +PD ++ + E+ K + + GRG G R + RGRG
Sbjct: 64 SIIKYLRIPD--DVIDKVKEDLQLAKMRNRSQSADTGRG-GFHRNKARGRG 111
>gi|218187914|gb|EEC70341.1| hypothetical protein OsI_01238 [Oryza sativa Indica Group]
Length = 147
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEVI 76
Query: 76 LETLLVEETPRVKPK------------KPTAGRPVGRGRGRGR 106
+ + EET + + +P GRG GRG+
Sbjct: 77 DK--VQEETSKSRSDRRPPGVGRGRGRGDIGAKPGGRGIGRGQ 117
>gi|225437330|ref|XP_002264738.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 150
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 16/103 (15%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV- 75
Query: 76 LETLLVEETPRVKPKKP-------------TAGRPVGRGRGRG 105
++ + E R K P ++GRP +G GRG
Sbjct: 76 IDKVQEETKNRADRKPPGVGRGRGRGREDGSSGRP-AKGIGRG 117
>gi|402581860|gb|EJW75807.1| small nuclear ribonucleoprotein, partial [Wuchereria bancrofti]
Length = 123
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 3/88 (3%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N + +ELKNG +G + D MN HL+ T + G + + + VRG+ I+Y
Sbjct: 10 QNHPMLVELKNGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLR 69
Query: 70 LPDSLNLETLLVEETPRVKPKKPTAGRP 97
+PD ++ L+ EE V+ ++ R
Sbjct: 70 IPD--DVVELVKEEVKEVRRQQKDQQRA 95
>gi|291235317|ref|XP_002737590.1| PREDICTED: small nuclear ribonucleoprotein polypeptide D3-like
[Saccoglossus kowalevskii]
Length = 123
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E +G + G + + +MN + + +T + L+H+ +RG+
Sbjct: 7 IKVLHEAEGHIITCETSSGEVYRGKLIEAEDNMNCQMANITVTYRDGRVSQLEHVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK--KPTAGR 96
IR+ ILPD +++ P K K TAGR
Sbjct: 67 KIRFLILPD-------MLKNAPMFKKAGTKGTAGR 94
>gi|209732182|gb|ACI66960.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 128
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + G + +MN + + +T + L+ + +RG+
Sbjct: 7 IKILHEAEGHIVTGETNTGEVYRGKLIGAEDNMNCQMSNITVTHRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGTGAGRGKA 100
>gi|442762477|gb|JAA73397.1| Putative small nuclear ribonucleoprotein sm d3, partial [Ixodes
ricinus]
Length = 119
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 8/102 (7%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L++ L + V+ E G + G + + +MN + + +T + L+++ +RG
Sbjct: 3 LIKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENVYIRG 62
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPK-KPTAGRPVGRGRG 103
+ IR+ ILPD +++ P K TA GRG+
Sbjct: 63 SKIRFLILPD-------MLKNAPMFKKAGTKTATASAGRGKS 97
>gi|389610295|dbj|BAM18759.1| small ribonucleoprotein particle protein SmD3 [Papilio xuthus]
Length = 130
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + V +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHVVTCETITGEVYRGKLIEAEDNMNCQMTLVTVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK--KPTAGR 96
IR+ ILPD +++ P K + KP+AGR
Sbjct: 67 KIRFLILPD-------MLKNAPMFKRQGNKPSAGR 94
>gi|168013104|ref|XP_001759241.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689554|gb|EDQ75925.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 181
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVI 76
Query: 76 LETLLVEETPRVKPKKPT 93
+ + EET + +KPT
Sbjct: 77 DK--VQEETVKRSDRKPT 92
>gi|255081394|ref|XP_002507919.1| predicted protein [Micromonas sp. RCC299]
gi|226523195|gb|ACO69177.1| predicted protein [Micromonas sp. RCC299]
Length = 123
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + TV+IELK G GT+ + + N L+ + T + L+++ VRG+
Sbjct: 13 VKLLHEAEGHTVTIELKTGDTYRGTLLEAEDNWNCQLEGITHTGRDGRVNQLENVYVRGS 72
Query: 64 NIRYYILPDSL 74
IR+ I+PD L
Sbjct: 73 KIRFLIIPDML 83
>gi|259483912|tpe|CBF79688.1| TPA: small nuclear ribonucleoprotein (LSM2), putative
(AFU_orthologue; AFUA_2G15210) [Aspergillus nidulans
FGSC A4]
Length = 98
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N+ V+IELKN + GT+ VD +N L + + K P ++ ++
Sbjct: 1 MLFFSFFKTLTNQVVTIELKNDIRIRGTLKSVDQYLNIKLDDIDVLDLDKYPHLSSVKNM 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++ L+E+ R
Sbjct: 61 FIRGSVVRYVVLPRS-EVDVGLLEDATR 87
>gi|219110787|ref|XP_002177145.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411680|gb|EEC51608.1| predicted protein, partial [Phaeodactylum tricornutum CCAP
1055/1]
Length = 87
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E+KNG I G + G + +MN L V T + + ++ +RG+
Sbjct: 8 IKLLFEAEGMKITVEMKNGEIYRGLLVGAEDTMNVSLSDVLRTARNGKITKMPNVYLRGS 67
Query: 64 NIRYYILPDSL 74
+IR+ LPD L
Sbjct: 68 SIRFIALPDLL 78
>gi|320165991|gb|EFW42890.1| small nuclear ribonucleoprotein Sm D3 [Capsaspora owczarzaki ATCC
30864]
Length = 135
Score = 43.5 bits (101), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+IELK + G + V+ +MN L+ + T + L + +RG+
Sbjct: 7 IKVLHEAVGHIVTIELKTSEVYRGKLFQVEDNMNCQLEDITFTSRDGQVSRLQQVYIRGS 66
Query: 64 NIRYYILPDSL 74
+R++I+PD +
Sbjct: 67 KVRFFIVPDMI 77
>gi|270001426|gb|EEZ97873.1| hypothetical protein TcasGA2_TC000255 [Tribolium castaneum]
Length = 95
Score = 43.5 bits (101), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDTEKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPT 93
+RG+ +RY LP ++T L++++ R + PT
Sbjct: 61 FIRGSVVRYVQLPAD-EVDTQLLQDSARKEATAPT 94
>gi|225734040|pdb|3CW1|D Chain D, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734049|pdb|3CW1|S Chain S, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734058|pdb|3CW1|T Chain T, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734067|pdb|3CW1|U Chain U, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 126
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGC 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|449529475|ref|XP_004171725.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVI 76
Query: 76 LETLLVEETPRVKPKKP 92
+ + EET +KP
Sbjct: 77 DK--VQEETKSRADRKP 91
>gi|312086540|ref|XP_003145116.1| hypothetical protein LOAG_09541 [Loa loa]
Length = 120
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELK+G +G + D MN HL+ T + G + + + VRG+ I+Y +PD +
Sbjct: 3 VELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGSTIKYLRIPD--D 60
Query: 76 LETLLVEETPRVKPKKPTAGRP 97
+ L+ EE V+ ++ R
Sbjct: 61 VVELVKEEVKEVRRQQKDQQRA 82
>gi|325087346|gb|EGC40656.1| small nuclear ribonucleoprotein LSM2 [Ajellomyces capsulatus H88]
Length = 148
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGN 63
F + N TV+IELKN + GT+ VD +N L +++ + P ++ ++ VRG+
Sbjct: 56 FFKTITNHTVTIELKNDIRIRGTLKSVDQYLNIKLDDIEVLDLDEYPHLSSVKNIFVRGS 115
Query: 64 NIRYYILPDS 73
+RY +LP +
Sbjct: 116 VVRYIVLPQA 125
>gi|123480015|ref|XP_001323163.1| Sm protein [Trichomonas vaginalis G3]
gi|121906022|gb|EAY10940.1| Sm protein [Trichomonas vaginalis G3]
Length = 112
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + N V I L G GT+ V+ +MN L V T K + D VRG+
Sbjct: 7 IKLLHEATNFVVEIHLNTGDSYRGTLKYVEDNMNCWLTNVVHTQKDGQQIKFDKTYVRGS 66
Query: 64 NIRYYILPDSL 74
NI Y+ LP+ L
Sbjct: 67 NILYFDLPEML 77
>gi|398410479|ref|XP_003856589.1| hypothetical protein MYCGRDRAFT_78925 [Zymoseptoria tritici
IPO323]
gi|339476474|gb|EGP91565.1| hypothetical protein MYCGRDRAFT_78925 [Zymoseptoria tritici
IPO323]
Length = 100
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L N V++ELKN + GT+ VD +N L + + + K P HLS
Sbjct: 1 MLFFSFFKTLVNHEVTVELKNDISIRGTLKSVDQFLNIKLDNISVVDEVKFP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+RG+ +RY LP + ++T L+E+ R + + A
Sbjct: 57 VKNVFIRGSVVRYVHLP-AAAVDTPLLEDATRREASQTAA 95
>gi|226372678|gb|ACO51964.1| U7 snRNA-associated Sm-like protein LSm10 [Rana catesbeiana]
Length = 121
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L+ ++EL++ + G++ VD MN L+ V T + LD L + G
Sbjct: 17 LVILLQGLHGHATTVELRDESSAKGSVINVDAFMNVRLEKVTYTDRRGKESKLDDLFING 76
Query: 63 NNIRYYILPDSLNL 76
N+RY +P+ +++
Sbjct: 77 RNVRYIHIPEEVDI 90
>gi|15079335|gb|AAH11510.1| Small nuclear ribonucleoprotein D3 [Mus musculus]
Length = 126
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGR 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 100
>gi|393905582|gb|EFO18954.2| hypothetical protein LOAG_09541 [Loa loa]
Length = 135
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L N + +ELK+G +G + D MN HL+ T + G + + + VRG+
Sbjct: 7 LLRTAQNHPMLVELKSGETYNGHLVACDAWMNIHLRDAICTSRDGDRFLKMQEVYVRGST 66
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTAGRP 97
I+Y +PD ++ L+ EE V+ ++ R
Sbjct: 67 IKYLRIPD--DVVELVKEEVKEVRRQQKDQQRA 97
>gi|294932805|ref|XP_002780450.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239890384|gb|EER12245.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 126
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILP 71
+ + +ELKNG G + D MN H++ LT K G L +RGN+++Y +P
Sbjct: 14 QPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRGNHVKYLRIP 73
Query: 72 D 72
D
Sbjct: 74 D 74
>gi|156377251|ref|XP_001630770.1| predicted protein [Nematostella vectensis]
gi|156217797|gb|EDO38707.1| predicted protein [Nematostella vectensis]
Length = 114
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 42/86 (48%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV + + ++EL+N + + G I VD MN +K VK NL + V G
Sbjct: 13 LVCLIKAVQGYNTTVELRNESYLEGFIEHVDGFMNIKMKDVKFVKASGEVDNLPAMFVVG 72
Query: 63 NNIRYYILPDSLNLETLLVEETPRVK 88
IRY +PD +++ + +E +++
Sbjct: 73 TQIRYVHIPDEIDMRKAIEQELGKIQ 98
>gi|449526219|ref|XP_004170111.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 149
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVI 76
Query: 76 LETLLVEETPRVKPKKP 92
+ + EET +KP
Sbjct: 77 DK--VQEETKSRADRKP 91
>gi|326676382|ref|XP_003200562.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Danio
rerio]
Length = 120
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L+ + +++L++ + G + VD MN L+ V + ++D L + G
Sbjct: 17 LVILLQGLHGQVTTVDLRDESTARGRVINVDAFMNIRLENVLYRDRRGRKSSMDDLFITG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
N+RY +PD +N + ET + K R G G GR
Sbjct: 77 RNVRYVHIPDQIN-----IIETIEAQLSKIHRVRNFGAGGGR 113
>gi|400602727|gb|EJP70329.1| DOM34-interacting protein [Beauveria bassiana ARSEF 2860]
Length = 98
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L + V++ELKN + GT+ VD +N L + + + K P HLS
Sbjct: 1 MLFFSFFKTLIEQEVTVELKNDIQLRGTLKSVDQYLNIKLDDISVMEELKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP S +++T L+E+ R
Sbjct: 57 VKNVFIRGSVVRYVHLPAS-SVDTQLLEDATR 87
>gi|354547206|emb|CCE43940.1| hypothetical protein CPAR2_501650 [Candida parapsilosis]
Length = 106
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 4/96 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKN--PVNLDHLSVR 61
VR L + ++IEL NG G + + +MN L V +T G+N ++D + VR
Sbjct: 7 VRLLNEAQGHIITIELTNGDTYRGKLLENEDNMNASLFDVTIT-NGRNGSSKHMDQVFVR 65
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP 97
G+ IR+ +PD L + + P KPK P G P
Sbjct: 66 GSMIRFVSVPDILRHAPMFYMK-PGDKPKPPIRGPP 100
>gi|154308998|ref|XP_001553834.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
Length = 157
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 10/102 (9%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L + V++ELKN + G + VD +N L +++ + K P HLS
Sbjct: 60 MLFFSFFKTLVDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYP----HLSS 115
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
+RG+ +RY LP + LL + T R ++ T G+
Sbjct: 116 VKNVFIRGSVVRYVHLPGGVIDTALLEDATRREAAQQATKGK 157
>gi|6323176|ref|NP_013248.1| Smd3p [Saccharomyces cerevisiae S288c]
gi|1173457|sp|P43321.1|SMD3_YEAST RecName: Full=Small nuclear ribonucleoprotein Sm D3; Short=Sm-D3;
AltName: Full=snRNP core protein D3
gi|807056|gb|AAB32821.1| Smd3 protein, snRNP protein Smd3=D core small nuclear
ribonucleoprotein [Saccharomyces cerevisiae, BJ3434,
Peptide, 101 aa]
gi|1262307|gb|AAB82381.1| Smd3p: Small nuclear ribonucleoprotein D3 homolog [Saccharomyces
cerevisiae]
gi|1360574|emb|CAA97719.1| SMD3 [Saccharomyces cerevisiae]
gi|151941309|gb|EDN59687.1| Sm D3 [Saccharomyces cerevisiae YJM789]
gi|190406176|gb|EDV09443.1| small nuclear ribonucleoprotein Sm D3 [Saccharomyces cerevisiae
RM11-1a]
gi|256273010|gb|EEU07972.1| Smd3p [Saccharomyces cerevisiae JAY291]
gi|259148134|emb|CAY81383.1| Smd3p [Saccharomyces cerevisiae EC1118]
gi|285813562|tpg|DAA09458.1| TPA: Smd3p [Saccharomyces cerevisiae S288c]
gi|323303905|gb|EGA57686.1| Smd3p [Saccharomyces cerevisiae FostersB]
gi|323308144|gb|EGA61397.1| Smd3p [Saccharomyces cerevisiae FostersO]
gi|323332570|gb|EGA73978.1| Smd3p [Saccharomyces cerevisiae AWRI796]
gi|323336667|gb|EGA77933.1| Smd3p [Saccharomyces cerevisiae Vin13]
gi|323353994|gb|EGA85847.1| Smd3p [Saccharomyces cerevisiae VL3]
gi|349579868|dbj|GAA25029.1| K7_Smd3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764414|gb|EHN05938.1| Smd3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
gi|392297664|gb|EIW08763.1| Smd3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 101
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + VS+EL G G + + SMN L+ V T ++D + VRG+
Sbjct: 8 VKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKP 89
I++ ++PD L L + + R P
Sbjct: 68 QIKFIVVPDLLKNAPLFKKNSSRPMP 93
>gi|170038404|ref|XP_001847040.1| small nuclear ribonucleoprotein SM D3 [Culex quinquefasciatus]
gi|167882083|gb|EDS45466.1| small nuclear ribonucleoprotein SM D3 [Culex quinquefasciatus]
Length = 155
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + NL+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQLTVTFRDGRTANLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
IR+ ILPD L + ++ K TAGR
Sbjct: 67 KIRFLILPDMLKNAPMFKKQ----GAKSGTAGR 95
>gi|198436795|ref|XP_002126080.1| PREDICTED: similar to Small nuclear ribonucleoprotein Sm D3 (Sm-D3)
(snRNP core protein D3) [Ciona intestinalis]
Length = 130
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/100 (23%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN+ ++ V +T + L ++ +RG+
Sbjct: 7 IKVLHEAEGHVVTCESATGEVYRGKLIEAEDNMNSQMQDVTVTYRDGRTAQLQNIYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
+R+ ILPD +++ P ++ +K G GRG+
Sbjct: 67 QVRFMILPD-------MLKNAPMLRHQK---GGTAGRGKA 96
>gi|345569040|gb|EGX51909.1| hypothetical protein AOL_s00043g643 [Arthrobotrys oligospora ATCC
24927]
Length = 144
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L + V+IELKN + GT+ VD +N L +++ + K P HLS
Sbjct: 47 MLFFSFFKTLVDHEVTIELKNDLSIRGTLKSVDQFLNIKLDEIQVVDEVKYP----HLSA 102
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + ++T L+E+ R
Sbjct: 103 VKNVFIRGSVVRYVHLPAN-AVDTALLEDATR 133
>gi|238231831|ref|NP_001154102.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
gi|209734524|gb|ACI68131.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
gi|225704048|gb|ACO07870.1| Small nuclear ribonucleoprotein Sm D3 [Oncorhynchus mykiss]
Length = 128
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKILHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGTGAGRGKA 100
>gi|156083282|ref|XP_001609125.1| U6 snRNA-associated Sm-like protein LSm4 [Babesia bovis T2Bo]
gi|154796375|gb|EDO05557.1| U6 snRNA-associated Sm-like protein LSm4, putative [Babesia bovis]
Length = 104
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 4/94 (4%)
Query: 22 GTIVHGTITGVDISMNTHL-KTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 80
G G ++ D MN H+ + + KG L +RGNN++ + PD + T+
Sbjct: 11 GETYSGILSSCDAFMNVHMINAICTSKKGDEFWKLSECFIRGNNVKSFRFPDE--VATVA 68
Query: 81 VEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
+EE+ + + P RG RGR +GRG+
Sbjct: 69 LEESKAMVQENMNINGP-DRGASRGRRPHQGRGQ 101
>gi|221055864|ref|XP_002259070.1| U6 snRNA associated Sm-like protein Ls [Plasmodium knowlesi
strain H]
gi|193809141|emb|CAQ39843.1| U6 snRNA associated Sm-like protein Ls,putative [Plasmodium
knowlesi strain H]
Length = 126
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N+ V +ELKNG G + D MN H+K + T K G + VRGN+++Y
Sbjct: 12 QNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNSVKYIR 71
Query: 70 LPDSLNLETLLVEETPRVKPK 90
+ D + +EET K +
Sbjct: 72 VQDEAIDQA--IEETNEQKAR 90
>gi|449542283|gb|EMD33263.1| hypothetical protein CERSUDRAFT_87573 [Ceriporiopsis subvermispora
B]
Length = 132
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTV-KLTLKGKNPVNLDHLSVRGNN 64
L N+ + +ELKNG +G + D MN L+ V + + +G L +RG+
Sbjct: 6 LLNAAQNKPMLVELKNGETFNGHLINCDNFMNITLREVYQTSAEGDRFWKLKECYIRGST 65
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRG 107
I+Y +PD+L L+ + E+ + + G V RGRG
Sbjct: 66 IKYLRVPDTL-LDAVKEEQNRAREAGRSARGAHVSGAGARGRG 107
>gi|157129367|ref|XP_001661657.1| small nuclear ribonucleoprotein sm d3 [Aedes aegypti]
gi|108872253|gb|EAT36478.1| AAEL011433-PA [Aedes aegypti]
Length = 147
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 48/99 (48%), Gaps = 8/99 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + NL+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMTQLTVTYRDGRTSNLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGR 102
IR+ ILPD +++ P K + AG GRG+
Sbjct: 67 KIRFMILPD-------MLKNAPMFKKQGAKAG-TAGRGK 97
>gi|115435742|ref|NP_001042629.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|12230291|sp|Q9LGE6.1|LSM4_ORYSJ RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|108792648|dbj|BAE95809.1| putative glycine-rich protein 2 [Oryza sativa Japonica Group]
gi|113532160|dbj|BAF04543.1| Os01g0256900 [Oryza sativa Japonica Group]
gi|215704752|dbj|BAG94780.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222618133|gb|EEE54265.1| hypothetical protein OsJ_01157 [Oryza sativa Japonica Group]
Length = 147
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 15/103 (14%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEVI 76
Query: 76 LETLLVEETPRVKPK------------KPTAGRPVGRGRGRGR 106
+ + EET + + +P GRG GRG+
Sbjct: 77 DK--VQEETSKSRSDRRPPGVGRGRGRGDIGTKPGGRGIGRGQ 117
>gi|50307679|ref|XP_453819.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642953|emb|CAH00915.1| KLLA0D17160p [Kluyveromyces lactis]
Length = 100
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 8 MKLNNET----VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
+KL NE+ +++EL NG + G + + +MN L+ V T +D + +RG+
Sbjct: 6 IKLLNESQGHEITLELNNGDMYRGKLVENEDNMNCQLRDVIFTQANGKMTRMDDVFIRGS 65
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
NI+ ++PD L L ++T KP P G
Sbjct: 66 NIKLVVVPDMLK-HAPLFKKTAVSKPPPPIRG 96
>gi|296415636|ref|XP_002837492.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295633364|emb|CAZ81683.1| unnamed protein product [Tuber melanosporum]
Length = 249
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L VRGNNI+Y +PD +
Sbjct: 132 VELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKFFRLAECYVRGNNIKYLRVPDEI 190
>gi|209730588|gb|ACI66163.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 119
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKILHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTHRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGTGAGRGKA 100
>gi|357619535|gb|EHJ72069.1| hypothetical protein KGM_17625 [Danaus plexippus]
Length = 138
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 10/116 (8%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L N + +ELKNG +G + D MN +L+ V T + G + +RG+
Sbjct: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
Query: 65 IRYYILPDSLNLETLLVEETPRVKPK------KPTAGRPVGRGRGRGRGRGRGRGR 114
I+Y +PD + +V+E +VK + K G+ + GRG RG RGR
Sbjct: 66 IKYLRIPDEV---IDMVKEETQVKSRGRGEISKGRGGQNMRSGRGGSRGAFGNRGR 118
>gi|440640678|gb|ELR10597.1| hypothetical protein GMDG_04869 [Geomyces destructans 20631-21]
Length = 100
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L ++ V++ELKN + GT+ VD +N L + + + K P HLS
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIQIRGTLKSVDQYLNIKLDDISVVEEIKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++ ++T L+E+ R
Sbjct: 57 VKNVFIRGSVVRYVHLPGAV-VDTQLLEDATR 87
>gi|258597219|ref|XP_001347757.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
gi|254832602|gb|AAN35670.2| lsm4 homologue, putative [Plasmodium falciparum 3D7]
Length = 126
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N+ V +ELKNG G + D MN H+K + T K G + VRGN+I+Y
Sbjct: 12 QNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNSIKYIR 71
Query: 70 LPDSLNLETLLVEETPRVKP 89
+ D + +EET K
Sbjct: 72 VQDQAIEQA--IEETAEQKA 89
>gi|159476634|ref|XP_001696416.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
gi|158282641|gb|EDP08393.1| U6 snRNA-associated Sm-like protein LSm4 [Chlamydomonas
reinhardtii]
Length = 134
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDS 73
V +ELKNG +G + D MN HL V T K G+ + +RGN I+Y +P+
Sbjct: 15 VLVELKNGETYNGYLQHCDTWMNLHLSEVICTSKDGQRFFKMPEAYIRGNTIKYISVPEE 74
Query: 74 LNLETLLVEETPRVKPKKPTAG 95
+ + + EE R K+PT
Sbjct: 75 VVDK--VQEENLRRDEKRPTVA 94
>gi|170574009|ref|XP_001892634.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|170579971|ref|XP_001895061.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|312076574|ref|XP_003140922.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|158598127|gb|EDP36091.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|158601689|gb|EDP38531.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
gi|307763915|gb|EFO23149.1| small nuclear ribonucleoprotein Sm D3 [Loa loa]
gi|402590446|gb|EJW84376.1| small nuclear ribonucleoprotein Sm D3 [Wuchereria bancrofti]
Length = 138
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E G + G + + +MN + V +T + +LD++ +RG+
Sbjct: 8 IKILHEAEGHVITLETTIGEVYRGKLNEAEDNMNCQMSEVTVTYRDGRTHHLDNVFIRGS 67
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 68 KIRFMILPDML 78
>gi|45270956|gb|AAS56859.1| YLR147C [Saccharomyces cerevisiae]
Length = 101
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + VS+EL G G + + SMN L+ V T ++D + VRG+
Sbjct: 8 VKLLNEAQGHIVSLELTTGATYRGKLVESEDSMNVQLRDVIATEPQGAVTHMDQIFVRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
I++ ++PD L++ P K K P+ P RG R
Sbjct: 68 QIKFIVVPD-------LLKNAPLFK-KNPSRPMPPIRGPKR 100
>gi|307107546|gb|EFN55788.1| hypothetical protein CHLNCDRAFT_22901 [Chlorella variabilis]
Length = 132
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDS 73
V IELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 VLIELKNGETYNGHMVQCDTWMNIHLREVICTSKDGDRFWRMPEAYIRGNTIKYLRVPDE 74
Query: 74 L 74
+
Sbjct: 75 V 75
>gi|340383261|ref|XP_003390136.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Amphimedon
queenslandica]
Length = 131
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E G I G + + +MN L+ V +T + L+ + VRG+
Sbjct: 7 IKLLHEAEGHIVTLETVMGEIYRGKLLEAEDNMNCQLQNVTVTNRSGQVSQLEQVFVRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK 90
IR+ I+PD +++ P KPK
Sbjct: 67 MIRFLIVPD-------MLKNAPMFKPK 86
>gi|449443839|ref|XP_004139683.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Cucumis sativus]
Length = 88
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVF 76
Query: 76 LETL 79
++T+
Sbjct: 77 MKTV 80
>gi|77745469|gb|ABB02633.1| glycine rich protein-like [Solanum tuberosum]
gi|82623401|gb|ABB87115.1| glycine rich protein-like [Solanum tuberosum]
Length = 147
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|357511251|ref|XP_003625914.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|357516335|ref|XP_003628456.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355500929|gb|AES82132.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355522478|gb|AET02932.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 150
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|383858764|ref|XP_003704869.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm4-like [Megachile
rotundata]
Length = 158
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 14/103 (13%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N + +ELKNG +G + D MN +L+ V T + G + +RG+ I+Y
Sbjct: 30 QNHPMLVELKNGETYNGHLVSCDSWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLR 89
Query: 70 LPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGR 112
+PD + +V+E ++K RGRG +GRG+ +
Sbjct: 90 IPDEV---IDMVKEDIQMK----------SRGRGEMKGRGQNQ 119
>gi|302814278|ref|XP_002988823.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
gi|300143394|gb|EFJ10085.1| hypothetical protein SELMODRAFT_128761 [Selaginella
moellendorffii]
Length = 180
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP----VNLDHLSVRGNNIRYYILPD 72
+ELKNG +G + D MN HL+ V T K + + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPECYIRGNTIKYLRVPD 76
Query: 73 SLNLETLLVEETPRVKPKKPTA 94
+ + + EET R K P+
Sbjct: 77 EVIDK--VQEETKRSDRKPPSV 96
>gi|37806009|dbj|BAC99422.1| putative snRNP core protein SMX5d [Oryza sativa Japonica Group]
Length = 288
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
+ +L + V++ELKN + GT+ VD +N L+ ++ + K P +++ + +
Sbjct: 198 FFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 257
Query: 61 RGNNIRYYILP-DSLNLETL 79
RG+ +RY +LP D ++++ L
Sbjct: 258 RGSVVRYVLLPQDGVDIDIL 277
>gi|414876860|tpg|DAA53991.1| TPA: hypothetical protein ZEAMMB73_426325 [Zea mays]
Length = 172
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|367000273|ref|XP_003684872.1| hypothetical protein TPHA_0C02850 [Tetrapisispora phaffii CBS
4417]
gi|357523169|emb|CCE62438.1| hypothetical protein TPHA_0C02850 [Tetrapisispora phaffii CBS
4417]
Length = 95
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L ++ V++ELKN + GT+ VD +N L + K K P ++ ++
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNDKTKYPHLTSVRNI 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+N+RY L ++ ++T L+++ R
Sbjct: 61 FIRGSNVRYVYLQKNM-VDTNLLQDAAR 87
>gi|773428|gb|AAA65451.1| small nuclear ribonucleoprotein, partial [Caenorhabditis elegans]
Length = 71
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
V++E G + G ++ + +MN L +T + LD++ +RGN IR+ ILPD L
Sbjct: 5 VTLETVTGEVYRGKLSEAEDNMNCQLAETVVTFRDGRSHQLDNVFIRGNKIRFMILPDML 64
>gi|448515433|ref|XP_003867337.1| Smd3 core snRNP protein [Candida orthopsilosis Co 90-125]
gi|380351676|emb|CCG21899.1| Smd3 core snRNP protein [Candida orthopsilosis]
Length = 106
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV--NLDHLSVR 61
VR L + ++IEL NG G + + +MN+ L V +T G+N ++D + +R
Sbjct: 7 VRLLNEAQGHIITIELTNGDTYRGKLLENEDNMNSSLFDVTIT-NGRNGSLKHMDQVFIR 65
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP 97
G+ IR+ +PD L + + P KPK P G P
Sbjct: 66 GSMIRFVSVPDILRHAPMFYMK-PGDKPKPPIRGPP 100
>gi|346324359|gb|EGX93956.1| small nuclear ribonucleoprotein LSM2 [Cordyceps militaris CM01]
Length = 98
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L ++ V++ELKN + GT+ VD +N L + + + K P ++ ++
Sbjct: 1 MLFFSFFKTLIDQEVTVELKNDIQLRGTLKSVDQYLNIKLDDISVIEELKYPHMSSVKNV 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + +++T L+E+ R
Sbjct: 61 FIRGSVVRYVHLP-AASVDTQLLEDATR 87
>gi|428164901|gb|EKX33911.1| hypothetical protein GUITHDRAFT_98209 [Guillardia theta CCMP2712]
Length = 125
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + DI MN L+ V T + G + +RGNNI+Y +PD +
Sbjct: 3 VELKNGETYNGILVNCDIWMNLSLRDVVCTSRDGDKFWKIPECYIRGNNIKYLRVPDEV 61
>gi|58265314|ref|XP_569813.1| glycine rich protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57226045|gb|AAW42506.1| glycine rich protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 117
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTV-KLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN L+ V + + G+ + + ++GN I+Y+ + D+
Sbjct: 17 VELKNGVTFNGHLVECDTFMNVTLREVYQTSADGERFWKMKEMFIKGNIIKYFRIADN-- 74
Query: 76 LETLLVEETPRVKPKKPTAGRPVGRGRG 103
++E+ + K A R G RG
Sbjct: 75 ----ILEQAAEEQDKARAANRARGGARG 98
>gi|194753313|ref|XP_001958958.1| GF12297 [Drosophila ananassae]
gi|190620256|gb|EDV35780.1| GF12297 [Drosophila ananassae]
Length = 151
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/108 (22%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN + + +T + +L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTASLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD L P + G+G G GRG+
Sbjct: 67 KIRFLILPDMLK--------------NAPMFKKQTGKGLGGTAGRGKA 100
>gi|83769760|dbj|BAE59895.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 133
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ + +G L + +RGNNI+Y +P+ +
Sbjct: 29 VELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEEI- 87
Query: 76 LETLLVEETPRVKPK 90
+V+E P+ +P
Sbjct: 88 --IEMVKEQPQNQPS 100
>gi|401840421|gb|EJT43250.1| SMD3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 99
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 40/86 (46%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++EL G G + + SMN L+ V T ++D + VRG+
Sbjct: 6 VKLLNEAQGHVVTLELTTGATYRGKLVESEDSMNVQLRDVTATEPHGAVTHMDQIFVRGS 65
Query: 64 NIRYYILPDSLNLETLLVEETPRVKP 89
I++ ++PD L L + R P
Sbjct: 66 QIKFIVVPDLLKNAPLFKRNSSRPMP 91
>gi|300175666|emb|CBK20977.2| unnamed protein product [Blastocystis hominis]
Length = 108
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
TV +EL NG G + + +MN L V + + L+++ +RG+ +RY +LPD
Sbjct: 17 TVIVELTNGEKYRGHLVRAEDNMNCQLTNVTMRARDGKLSKLENVYIRGSRVRYVVLPDI 76
Query: 74 LNLETLLVEETPRVKPKKPTAGRPVGRGRG 103
L ++ + ++ ++K K + R + +G
Sbjct: 77 LK-QSPMFQKVQQLKEAKESVEREKNKLKG 105
>gi|393217755|gb|EJD03244.1| U6 snRNA-associated Sm-like protein LSm2 [Fomitiporia
mediterranea MF3/22]
Length = 96
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M + L ++TV++ELKN + G + VD +N L +K+ + +P + + +
Sbjct: 1 MLIFSLFKTLTDQTVTVELKNDLSITGVLKSVDQFLNIRLDNIKVLDEANHPHMMAVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + +++T L+E+ R
Sbjct: 61 FIRGSVVRYVQLP-AQHVDTQLLEDATR 87
>gi|294463283|gb|ADE77177.1| unknown [Picea sitchensis]
Length = 146
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEVI 76
Query: 76 LETLLVEETPRVKPKKP 92
+ V+E R+ K P
Sbjct: 77 DK---VQEEKRIDRKPP 90
>gi|296089694|emb|CBI39513.3| unnamed protein product [Vitis vinifera]
Length = 162
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 30 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 88
>gi|332376959|gb|AEE63619.1| unknown [Dendroctonus ponderosae]
Length = 138
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L V+ E G + G + + +MN L + +T + L+++ +RG+
Sbjct: 7 IKVLHDAEGHIVTCETITGEVYRGKLIEAEDNMNCQLTQITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
IR+ ILPD L + ++T K AGR
Sbjct: 67 KIRFLILPDMLKNAPMFKKQT-----KAGVAGR 94
>gi|240848533|ref|NP_001155808.1| small nuclear ribonucleoprotein Sm D3 [Acyrthosiphon pisum]
gi|239789870|dbj|BAH71532.1| ACYPI009639 [Acyrthosiphon pisum]
Length = 139
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E +G + G + + +MN + V +T + ++++ VRG+
Sbjct: 7 IKVLHEAEGHIVTCETIDGEVYRGKLIEAEDNMNCQVSHVTVTYRDGRVAQMENVYVRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGR 102
+R+ ILPD ++ P K K T G GRG+
Sbjct: 67 KVRFIILPD-------MLRNAPMFKSKM-TMGGAAGRGK 97
>gi|46121885|ref|XP_385496.1| hypothetical protein FG05320.1 [Gibberella zeae PH-1]
Length = 154
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G V L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVKGNNIKYLRVPDEI 75
>gi|346470701|gb|AEO35195.1| hypothetical protein [Amblyomma maculatum]
gi|427786045|gb|JAA58474.1| Putative u6 snrna-associated sm-like protein lsm2 [Rhipicephalus
pulchellus]
Length = 95
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 51/99 (51%), Gaps = 6/99 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T + K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSMCGTLHSVDQYLNIKLTDISVTEQDKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRP 97
+RG+ +RY LP ++T L+++ R K+ + +P
Sbjct: 61 FIRGSVVRYVQLPAD-EVDTQLLQDAAR---KEASQSKP 95
>gi|293335959|ref|NP_001170512.1| uncharacterized LOC100384520 [Zea mays]
gi|238005774|gb|ACR33922.1| unknown [Zea mays]
gi|413947013|gb|AFW79662.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|414876859|tpg|DAA53990.1| TPA: U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|195148972|ref|XP_002015436.1| GL11081 [Drosophila persimilis]
gi|198455755|ref|XP_002138132.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
gi|194109283|gb|EDW31326.1| GL11081 [Drosophila persimilis]
gi|198135383|gb|EDY68690.1| GA24604 [Drosophila pseudoobscura pseudoobscura]
Length = 150
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 14/108 (12%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G + G + + +MN + + +T + NL+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRTGNLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD L P + G+G G GRG+
Sbjct: 67 KIRFLILPDMLK--------------NAPMFKKQTGKGLGGTAGRGKA 100
>gi|56757161|gb|AAW26752.1| SJCHGC06377 protein [Schistosoma japonicum]
gi|226490214|emb|CAX69349.1| putative U6 snRNA-associated Sm-like protein LSm4 [Schistosoma
japonicum]
Length = 128
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELK+G +G + D MN HLK V T + G + +RG+ I+Y +PD +
Sbjct: 3 VELKSGETYNGHLVACDDWMNIHLKEVICTSRDGDRFWKMPECYIRGSIIKYLRIPD--D 60
Query: 76 LETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRG 113
+ + E+ K + + GRG G R + +GRG
Sbjct: 61 VIDKVKEDLQLAKMRNRSQSADTGRG-GFHRNKAKGRG 97
>gi|402580557|gb|EJW74507.1| Sm protein [Wuchereria bancrofti]
Length = 116
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 7 LMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKL--TLKGKNPVNLDHLSVRGNN 64
L + +V +ELKN + V G + G D +MN +KTV + + P++ D ++G
Sbjct: 22 LQAMEGSSVVVELKNYSTVQGILAGCDDAMNIEMKTVTIHDFKRHSTPLHCDSFHIQGKF 81
Query: 65 IRYYILPDSLN 75
IR+ N
Sbjct: 82 IRFVHFDHYFN 92
>gi|294881583|ref|XP_002769420.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239872829|gb|EER02138.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 137
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILP 71
+ + +ELKNG G + D MN H++ LT K G L +RGN+I+Y +P
Sbjct: 14 QPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRGNHIKYLRIP 73
Query: 72 D 72
D
Sbjct: 74 D 74
>gi|242056887|ref|XP_002457589.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
gi|241929564|gb|EES02709.1| hypothetical protein SORBIDRAFT_03g009890 [Sorghum bicolor]
Length = 145
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|167378504|ref|XP_001734822.1| small nuclear ribonucleoprotein Sm D3 [Entamoeba dispar SAW760]
gi|165903473|gb|EDR29003.1| small nuclear ribonucleoprotein Sm D3, putative [Entamoeba dispar
SAW760]
Length = 111
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72
V+IE+K G G + + +MN L+ V +T K + +++ +RGN +R+ +LP+
Sbjct: 18 VTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEYIFIRGNQVRFVVLPE 75
>gi|225450786|ref|XP_002283804.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Vitis vinifera]
Length = 149
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|407038001|gb|EKE38889.1| LSM domain containing protein [Entamoeba nuttalli P19]
Length = 111
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72
V+IE+K G G + + +MN L+ V +T K + +++ +RGN +R+ +LP+
Sbjct: 18 VTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEYIFIRGNQVRFVVLPE 75
>gi|226491554|ref|NP_001152235.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
gi|195654155|gb|ACG46545.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|116780108|gb|ABK21554.1| unknown [Picea sitchensis]
gi|116790929|gb|ABK25794.1| unknown [Picea sitchensis]
Length = 93
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M + +L + V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVEQDKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYIL-PDSLNLETL 79
+RG+ +RY +L PD ++++ L
Sbjct: 61 FIRGSVVRYVLLPPDGVDVDIL 82
>gi|417407887|gb|JAA50536.1| Putative snrnp core protein, partial [Desmodus rotundus]
Length = 127
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 33 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 92
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 93 FIRGSVVRYVQLPAD-EVDTQLLQDAAR 119
>gi|317147121|ref|XP_003189888.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 121
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ + +G L + +RGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEEI- 75
Query: 76 LETLLVEETPRVKPK 90
+V+E P+ +P
Sbjct: 76 --IEMVKEQPQNQPS 88
>gi|317147119|ref|XP_001821897.2| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 123
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ + +G L + +RGNNI+Y +P+ +
Sbjct: 19 VELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYIRGNNIKYLRIPEEI- 77
Query: 76 LETLLVEETPRVKPK 90
+V+E P+ +P
Sbjct: 78 --IEMVKEQPQNQPS 90
>gi|357129770|ref|XP_003566534.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Brachypodium distachyon]
gi|326528247|dbj|BAJ93305.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 142
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|326516310|dbj|BAJ92310.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326521472|dbj|BAK00312.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 143
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|392569319|gb|EIW62492.1| U6 snRNA-associated Sm-like protein LSm2 [Trametes versicolor
FP-101664 SS1]
Length = 96
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L ++ V++ELKN + GT+ VD +N L +K+ + ++P + + + +RG+ +RY
Sbjct: 10 LTDQRVTVELKNDLSITGTLKSVDQFLNIRLDNIKVLDEARHPHMMAVKNCFIRGSVVRY 69
Query: 68 YILPDSLNLETLLVEETPR 86
LP + +++T L+E+ R
Sbjct: 70 VQLP-AEHVDTQLLEDATR 87
>gi|388582559|gb|EIM22863.1| U6 snRNA-associated Sm-like protein LSm2 [Wallemia sebi CBS
633.66]
Length = 93
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L +TV++ELKN + GT+ VD +N L VK+ + + P + + + +RG+ +RY
Sbjct: 10 LTEQTVTVELKNDLCLIGTLKSVDQFLNIKLDNVKVLDEQRYPHMMAIKNTFIRGSVVRY 69
Query: 68 YILPDSLNLETLLVEETPR 86
LP S +++T L+++ R
Sbjct: 70 VQLP-SESIDTQLLQDATR 87
>gi|302831786|ref|XP_002947458.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
gi|300267322|gb|EFJ51506.1| hypothetical protein VOLCADRAFT_79613 [Volvox carteri f.
nagariensis]
Length = 140
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPD 72
V +ELKNG +G + D MN HL V T K G+ + +RGN I+Y +P+
Sbjct: 14 AVLVELKNGETYNGYLQQCDTWMNLHLSEVICTSKDGQRFFKMPEAYIRGNTIKYISVPE 73
Query: 73 SL 74
+
Sbjct: 74 EV 75
>gi|320035592|gb|EFW17533.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392868800|gb|EAS34594.2| small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 125
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI++ +P
Sbjct: 17 VELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKFLRVP---- 72
Query: 76 LETLLVEETPRVKPKKPTAGRPVGRGRG 103
EE + + +P RGRG
Sbjct: 73 ------EEVVEIARDQQQQNQPSTRGRG 94
>gi|50545379|ref|XP_500227.1| YALI0A19030p [Yarrowia lipolytica]
gi|49646092|emb|CAG84160.1| YALI0A19030p [Yarrowia lipolytica CLIB122]
Length = 105
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 19/91 (20%), Positives = 48/91 (52%), Gaps = 7/91 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++EL +G G + + +MN ++ V +T +G +L+ + +RG+
Sbjct: 8 LKLLSEAQGHVVTVELTSGHTYRGKLIEAEDNMNVQIRDVTVTARGGRVSHLEQVYIRGS 67
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
++R++ +P+ +++ P +P+ A
Sbjct: 68 HVRFFSIPE-------MLKNAPMFRPQTLAA 91
>gi|325182501|emb|CCA16956.1| 6 snRNAassociated Smlike protein putative [Albugo laibachii Nc14]
Length = 94
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V++ELKN + GT+ VD +N L V + K P +N+ +
Sbjct: 1 MLFYSFFKTLVGKEVAVELKNDVALMGTLHSVDQYLNMKLMGVSVVESDKYPQLMNMKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ IRY +P + ++T L+++ R
Sbjct: 61 FIRGSVIRYVQIP-AQEVDTDLLQDAAR 87
>gi|356572732|ref|XP_003554520.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 148
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|224064436|ref|XP_002301475.1| predicted protein [Populus trichocarpa]
gi|222843201|gb|EEE80748.1| predicted protein [Populus trichocarpa]
Length = 150
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|67476256|ref|XP_653731.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gi|56470719|gb|EAL48353.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449709025|gb|EMD48372.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
KU27]
Length = 111
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72
V+IE+K G G + + +MN L+ V +T K + +++ +RGN +R+ +LP+
Sbjct: 18 VTIEVKTGETYRGRMVETEDNMNCQLRDVTITAKDGSQSRTEYIFIRGNQVRFVVLPE 75
>gi|356500280|ref|XP_003518961.1| PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4-like
[Glycine max]
Length = 149
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|328771488|gb|EGF81528.1| hypothetical protein BATDEDRAFT_7518, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 77
Score = 42.0 bits (97), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
V+IELK G++ G + + +MN L+ + T + L + +RG+ IR+ I+PD L
Sbjct: 11 VTIELKTGSVYRGKLLNAEDNMNVQLRDITHTARNGRVSQLTQVFIRGSQIRFVIVPDML 70
>gi|255629165|gb|ACU14927.1| unknown [Glycine max]
Length = 148
Score = 42.0 bits (97), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|91077956|ref|XP_967320.1| PREDICTED: similar to smx5 [Tribolium castaneum]
Length = 99
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 48/90 (53%), Gaps = 3/90 (3%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGN 63
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +RG+
Sbjct: 10 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDTEKYPHMLSVKNCFIRGS 69
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPT 93
+RY LP ++T L++++ R + PT
Sbjct: 70 VVRYVQLPAD-EVDTQLLQDSARKEATAPT 98
>gi|346472269|gb|AEO35979.1| hypothetical protein [Amblyomma maculatum]
Length = 122
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHVVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFMILPDML 77
>gi|395328270|gb|EJF60663.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 132
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTV-KLTLKGKNPVNLDHLSVRG 62
+ L N+ + +ELKNG +G + D MN L+ V + + +G L +RG
Sbjct: 4 LSLLNAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSAEGDKFWKLRECYIRG 63
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRG 107
+ I+Y +PD+L L+ + E+ + + G V RGRG
Sbjct: 64 STIKYLRVPDTL-LDAVKEEQNRAREAGRSARGAHVSGAGQRGRG 107
>gi|301099937|ref|XP_002899059.1| 6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
gi|262104371|gb|EEY62423.1| 6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
Length = 134
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V++ELKN + G + VD +N L V + K P +N+ +
Sbjct: 39 MFFYSFFKTLVGKEVAVELKNDVALMGVLDSVDQYLNIKLLNVSVVEGDKFPQLMNMKNC 98
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG++IRY +P ++T L+++ R
Sbjct: 99 FIRGSSIRYVQIPAG-EVDTELLQDAAR 125
>gi|20260282|gb|AAM13039.1| unknown protein [Arabidopsis thaliana]
gi|22136528|gb|AAM91342.1| unknown protein [Arabidopsis thaliana]
Length = 129
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|85000985|ref|XP_955211.1| u6 snrna-associated sm-like protein lsm4 [Theileria annulata
strain Ankara]
gi|65303357|emb|CAI75735.1| u6 snrna-associated sm-like protein lsm4, putative [Theileria
annulata]
Length = 105
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
IELKNG G + D MN H+ V T K G + LD +RGN ++ LP+ +
Sbjct: 18 IELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFIRGNTVKSLRLPNEVA 77
Query: 76 LETLLVEETPRVKPKK 91
E E+ PR KK
Sbjct: 78 -EIAKEEKHPRKYRKK 92
>gi|255564128|ref|XP_002523061.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
gi|223537623|gb|EEF39246.1| Small nuclear ribonucleoprotein SM D3, putative [Ricinus
communis]
Length = 147
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|241690470|ref|XP_002411764.1| small nuclear ribonucleoprotein Sm D3, putative [Ixodes scapularis]
gi|215504603|gb|EEC14097.1| small nuclear ribonucleoprotein Sm D3, putative [Ixodes scapularis]
Length = 122
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMANITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK-KPTAGRPVGRGR 102
IR+ ILPD +++ P K TA GRG+
Sbjct: 67 KIRFLILPD-------MLKNAPMFKKAGTKTATASAGRGK 99
>gi|346979373|gb|EGY22825.1| DOM34-interacting protein [Verticillium dahliae VdLs.17]
Length = 1081
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V+IELKN + GT+ VD +N L+ + + + K P ++ ++
Sbjct: 984 MLFFSFFKTLIDHEVTIELKNDIQIRGTLKSVDQYLNIKLEDISVVEELKYPHLSSVKNV 1043
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + +++ L+E+ R
Sbjct: 1044 FIRGSVVRYVHLP-AASVDVPLLEDATR 1070
>gi|302414568|ref|XP_003005116.1| DOM34-interacting protein [Verticillium albo-atrum VaMs.102]
gi|261356185|gb|EEY18613.1| DOM34-interacting protein [Verticillium albo-atrum VaMs.102]
Length = 977
Score = 41.6 bits (96), Expect = 0.059, Method: Composition-based stats.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V+IELKN + GT+ VD +N L+ + + + K P ++ ++
Sbjct: 880 MLFFSFFKTLIDHEVTIELKNDIQIRGTLKSVDQYLNIKLEDISVVEELKYPHLSSVKNV 939
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + +++ L+E+ R
Sbjct: 940 FIRGSVVRYVHLP-AASVDVPLLEDATR 966
>gi|363808094|ref|NP_001242473.1| uncharacterized protein LOC100786834 [Glycine max]
gi|255645080|gb|ACU23039.1| unknown [Glycine max]
Length = 138
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 3 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 61
>gi|156841541|ref|XP_001644143.1| hypothetical protein Kpol_1053p22 [Vanderwaltozyma polyspora DSM
70294]
gi|156114779|gb|EDO16285.1| hypothetical protein Kpol_1053p22 [Vanderwaltozyma polyspora DSM
70294]
Length = 95
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV--NLDHL 58
M F L ++ V++ELKN + GT+ VD +N L + T + K P ++ ++
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCTDEQKYPHLGSVRNI 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY L S+ ++T L+++ R
Sbjct: 61 FIRGSTVRYVYLQKSM-VDTNLLQDAAR 87
>gi|395328022|gb|EJF60417.1| U6 snRNA-associated Sm-like protein LSm2, partial [Dichomitus
squalens LYAD-421 SS1]
Length = 89
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 3/79 (3%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L ++ V++ELKN + GT+ VD +N L +K+ + ++P + + + +RG+ +RY
Sbjct: 9 LTDQRVTVELKNDLSITGTLKSVDQFLNIRLDNIKVLDEARHPHMMAVKNCFIRGSVVRY 68
Query: 68 YILPDSLNLETLLVEETPR 86
LP + +++T L+E+ R
Sbjct: 69 VQLP-AEHVDTQLLEDATR 86
>gi|260944226|ref|XP_002616411.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
gi|238850060|gb|EEQ39524.1| hypothetical protein CLUG_03652 [Clavispora lusitaniae ATCC
42720]
Length = 71
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL-KGKNPVNLDHLSVRGNN 64
L + NE + +ELKNG V G ++ D MN L V KG+ ++ + +RG++
Sbjct: 1 MLTSIKNEEILVELKNGETVIGKLSNCDSWMNLTLSNVVHNYNKGEKFNKIEEIYIRGSH 60
Query: 65 IRYYILPDSL 74
I+Y LPDS+
Sbjct: 61 IKYLRLPDSV 70
>gi|82913333|ref|XP_728601.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485036|gb|EAA20166.1| Sm protein, putative [Plasmodium yoelii yoelii]
Length = 130
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 44/86 (51%), Gaps = 4/86 (4%)
Query: 7 LMKLN-NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L+K + N+ V +ELKNG G + D MN H+K + T K G + VRG++
Sbjct: 5 LLKCSQNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGSS 64
Query: 65 IRYYILPDSLNLETLLVEETPRVKPK 90
++Y + D +E +EET K +
Sbjct: 65 VKYIRVQDQA-IEN-AIEETAEQKSR 88
>gi|378733177|gb|EHY59636.1| U6 snRNA-associated Sm-like protein LSm2 [Exophiala dermatitidis
NIH/UT8656]
Length = 98
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L +TV++ELKN + GT+ VD +N L + + + K P HLS
Sbjct: 1 MLFFSFFKTLTQQTVTVELKNDISIRGTLKSVDQYLNIKLDDIVVLDELKYP----HLSS 56
Query: 60 -----VRGNNIRYYILP 71
+RG+ +RY LP
Sbjct: 57 VKNVFIRGSVVRYVHLP 73
>gi|353239883|emb|CCA71776.1| related to LSM2-Sm-like (Lsm) protein [Piriformospora indica DSM
11827]
Length = 94
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L + TV++ELKN + G + VD +N L +K+ ++P + + + +RG+ IRY
Sbjct: 10 LTDHTVTVELKNDLCITGVLKSVDQYLNIRLDAIKVENAEQHPHMMAVKNCFIRGSVIRY 69
Query: 68 YILPDSLNLETLLVEETPR 86
LP S ++ L+E+ R
Sbjct: 70 VQLPAS-AMDIQLLEDATR 87
>gi|15241028|ref|NP_198124.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
gi|332006335|gb|AED93718.1| U6 snRNA-associated Sm-like protein LSm4 [Arabidopsis thaliana]
Length = 129
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|21593495|gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|389582938|dbj|GAB65674.1| small nuclear ribonucleoprotein [Plasmodium cynomolgi strain B]
Length = 116
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
T+S+E K G + GT+ + +MN L+ V + K + L+ + +RG ++ + I PD
Sbjct: 17 TISVETKAGVLYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQVYIRGGSVSFMIFPDM 76
Query: 74 L 74
L
Sbjct: 77 L 77
>gi|302881905|ref|XP_003039863.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
gi|256720730|gb|EEU34150.1| hypothetical protein NECHADRAFT_85726 [Nectria haematococca mpVI
77-13-4]
Length = 125
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN L+ V+ + +G V L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVSCDTWMNLTLREVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPDEI 75
>gi|407924656|gb|EKG17689.1| hypothetical protein MPH_05138 [Macrophomina phaseolina MS6]
Length = 100
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L + V++ELKN + GT+ VD +N L + + + K P HLS
Sbjct: 1 MLFFSFFKTLVDHEVTVELKNDISIRGTLKSVDQFLNIKLDDISVVEELKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + ++T L+E+ R
Sbjct: 57 VKNVFIRGSVVRYVHLPGA-AVDTALLEDATR 87
>gi|366999829|ref|XP_003684650.1| hypothetical protein TPHA_0C00590 [Tetrapisispora phaffii CBS
4417]
gi|357522947|emb|CCE62216.1| hypothetical protein TPHA_0C00590 [Tetrapisispora phaffii CBS
4417]
Length = 100
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + VS+EL G G + + +MN L+ V T +D + +RG+
Sbjct: 6 IKLLSEAQGHVVSLELSTGETYRGKLVDSEDNMNVQLRDVTHTGVNSEVTRMDDVFIRGS 65
Query: 64 NIRYYILPDSL 74
IR++ LPD L
Sbjct: 66 QIRFFALPDML 76
>gi|345321417|ref|XP_001520666.2| PREDICTED: hypothetical protein LOC100091911 [Ornithorhynchus
anatinus]
Length = 233
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +
Sbjct: 141 FYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFI 200
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ +RY LP + ++T L+++ R
Sbjct: 201 RGSVVRYVQLP-ADEVDTQLLQDAAR 225
>gi|297607988|ref|NP_001061016.2| Os08g0154700 [Oryza sativa Japonica Group]
gi|242078209|ref|XP_002443873.1| hypothetical protein SORBIDRAFT_07g003620 [Sorghum bicolor]
gi|357145002|ref|XP_003573488.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Brachypodium distachyon]
gi|195656753|gb|ACG47844.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
gi|215769192|dbj|BAH01421.1| unnamed protein product [Oryza sativa Japonica Group]
gi|241940223|gb|EES13368.1| hypothetical protein SORBIDRAFT_07g003620 [Sorghum bicolor]
gi|255678156|dbj|BAF22930.2| Os08g0154700 [Oryza sativa Japonica Group]
gi|326493970|dbj|BAJ85447.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326512672|dbj|BAJ99691.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326530750|dbj|BAK01173.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|413921285|gb|AFW61217.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
Length = 93
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M + +L + V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 59 SVRGNNIRYYILP-DSLNLETL 79
+RG+ +RY +LP D ++++ L
Sbjct: 61 FIRGSVVRYVLLPQDGVDIDIL 82
>gi|121543877|gb|ABM55603.1| LSM2-like protein [Maconellicoccus hirsutus]
Length = 96
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V IELKN + GT++ VD +N LK V + K+P +++ +
Sbjct: 1 MLFYSFFKSLVGKEVIIELKNDLSMCGTLSSVDQYLNLKLKEVTVNDTEKHPHMLSVSNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
+RG+ +RY LP ++T L+++ R + +K
Sbjct: 61 FIRGSVVRYVQLPAD-EVDTQLLQDATRNEAEK 92
>gi|327287168|ref|XP_003228301.1| PREDICTED: u7 snRNA-associated Sm-like protein LSm10-like [Anolis
carolinensis]
Length = 123
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 45/98 (45%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L +EL++ ++ G +T VD MN L T + L+ L V G
Sbjct: 17 LVLLLQGLTGRVTQVELRDESLAVGRVTNVDAFMNIRLGPTTFTDRTGRTSQLEDLFVAG 76
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGR 100
++RY +PD +++ + + ++ + G+ GR
Sbjct: 77 RSVRYVHIPDEVDIRAAIEGQLQLLRRVRSFGGKDKGR 114
>gi|156097204|ref|XP_001614635.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium vivax Sal-1]
gi|148803509|gb|EDL44908.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
vivax]
Length = 116
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
T+S+E K G + GT+ + +MN L+ V + K + L+ + +RG ++ + I PD
Sbjct: 17 TISVETKAGVLYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQVYIRGGSVSFMIFPDM 76
Query: 74 L 74
L
Sbjct: 77 L 77
>gi|12230329|sp|Q9ZRU9.1|LSM4_FAGSY RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm4;
AltName: Full=Glycine-rich protein 2
gi|3927916|emb|CAA10233.1| glycine-rich protein 2 [Fagus sylvatica]
Length = 148
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELK+G +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKSGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPDCYIRGNTIKYLRVPDEV- 75
Query: 76 LETLLVEETPRVKPKKP 92
++ + E R K P
Sbjct: 76 IDKVQEETKSRADRKPP 92
>gi|348519431|ref|XP_003447234.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 1
[Oreochromis niloticus]
gi|348519433|ref|XP_003447235.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like isoform 2
[Oreochromis niloticus]
Length = 140
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
+V L L E +++L+N + G + VD MN L+ V + L L + G
Sbjct: 35 MVILLQGLQGEVTTVDLRNESTARGRVVNVDAFMNIRLEDVLYRDRRGQLTQLQDLFITG 94
Query: 63 NNIRYYILPDSLNL 76
NIRY +PD +++
Sbjct: 95 RNIRYVHIPDHMDI 108
>gi|297812937|ref|XP_002874352.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
gi|297320189|gb|EFH50611.1| hypothetical protein ARALYDRAFT_326933 [Arabidopsis lyrata subsp.
lyrata]
Length = 143
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|225684632|gb|EEH22916.1| U6 snRNP-associated protein Lsm4 [Paracoccidioides brasiliensis
Pb03]
gi|226286829|gb|EEH42342.1| small nuclear ribonucleoprotein [Paracoccidioides brasiliensis
Pb18]
Length = 124
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ T +G L + VRGNNI+Y +P
Sbjct: 17 VELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVP---- 72
Query: 76 LETLLVEETPRVKPKKPTAGRPVGRGRGRGRGR 108
EE + K +P RGRG + R
Sbjct: 73 ------EEIVDIA-KDQQQNQPSNRGRGSQQHR 98
>gi|343424875|emb|CBQ68413.1| related to LSM2-Sm-like (Lsm) protein [Sporisorium reilianum
SRZ2]
Length = 96
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L + V+IELKN + GT+ VD +N + +++ + K+P + + +RG+ +RY
Sbjct: 10 LTGQQVTIELKNDLAIQGTLKSVDQFLNFKIDNIRVLDEAKHPHMMAVKSAFIRGSVVRY 69
Query: 68 YILPDSLNLETLLVEETPRVKPKKPT 93
+P + ++T L+E+ R + T
Sbjct: 70 VHIP-AAAVDTQLLEDATRREAASQT 94
>gi|340960256|gb|EGS21437.1| hypothetical protein CTHT_0032950 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 769
Score = 41.2 bits (95), Expect = 0.073, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN L+ V+ + +G + L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDEI 75
>gi|324523014|gb|ADY48174.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 166
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N + +ELKNG +G + D MN HL+ T + G + + + VRG+ I+Y
Sbjct: 48 QNHPMLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEVYVRGSTIKYLR 107
Query: 70 LPDSLNLETLLVEETPRVKPKKPTAGR 96
+PD ++ L+ +E V+ ++ R
Sbjct: 108 IPD--DVVELVKDEVKEVRRQQKDQQR 132
>gi|296005187|ref|XP_002808925.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
gi|225631811|emb|CAX64206.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
Length = 116
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
T+S+E K+G + GT+ + +MN L+ V + K + L+ + +RG ++ + I PD
Sbjct: 17 TISVETKSGILYRGTLLFAEDNMNCLLENVSVVKKDGKQILLEQVYIRGGSVSFMIFPDM 76
Query: 74 L 74
L
Sbjct: 77 L 77
>gi|429858964|gb|ELA33765.1| small nuclear ribonucleoprotein sm d3 [Colletotrichum
gloeosporioides Nara gc5]
Length = 93
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 35 SMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+MN LK + +T + +LD + +RG+++R++I+PD L + R +
Sbjct: 18 NMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPDMLRNAPMFRSRNVRGRGVGMAP 77
Query: 95 GRP-VGRGRGRGRG 107
GR V R R GRG
Sbjct: 78 GRATVSRARASGRG 91
>gi|242013355|ref|XP_002427375.1| Small nuclear ribonucleoprotein SM D3, putative [Pediculus
humanus corporis]
gi|212511744|gb|EEB14637.1| Small nuclear ribonucleoprotein SM D3, putative [Pediculus
humanus corporis]
Length = 136
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + T +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETITGEVYRGKLIEAEDNMNCQMVTCSVTYRDGKVSQLENVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|156841591|ref|XP_001644168.1| hypothetical protein Kpol_1053p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156114804|gb|EDO16310.1| hypothetical protein Kpol_1053p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 66
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 26/30 (86%)
Query: 54 NLDHLSVRGNNIRYYILPDSLNLETLLVEE 83
+L ++++RGN IR ILPDSLNL++LLV+E
Sbjct: 1 SLQYINIRGNTIRPIILPDSLNLDSLLVDE 30
>gi|408393268|gb|EKJ72533.1| hypothetical protein FPSE_07170 [Fusarium pseudograminearum
CS3096]
Length = 139
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G V L + V+GNNI+Y +PD +
Sbjct: 32 VELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVKGNNIKYLRVPDEI 90
>gi|118490850|ref|XP_001238734.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria tenella
strain Houghton]
gi|109238517|emb|CAK51481.1| small nuclear ribonucleoprotein (snrnp),putative [Eimeria
tenella]
Length = 125
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + T+++E K G++ GT+ + +MN ++ V +T K ++L+ + +RG+
Sbjct: 11 VKLLHEGLGHTITVETKTGSLYRGTLENAEDNMNMLIQGVTVTHKDGKVLSLEQVYIRGS 70
Query: 64 NIRYYILPDSL 74
++ I PD L
Sbjct: 71 QVQMVIFPDML 81
>gi|221131194|ref|XP_002165640.1| PREDICTED: small nuclear ribonucleoprotein Sm D3-like [Hydra
magnipapillata]
Length = 130
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 48/101 (47%), Gaps = 8/101 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E G + G + + +MN L + +T + L+ + +RG+
Sbjct: 9 IKVLHEAEGHIVTLETLTGEVYRGKLLEAEDNMNCQLTHITMTARDGKVAQLEQIFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
IR+ ILPD +++ P K K + + G GRG+
Sbjct: 69 KIRFVILPD-------MLKNAPMFK-KMLVSQKNTGVGRGK 101
>gi|405976315|gb|EKC40827.1| Small nuclear ribonucleoprotein Sm D3 [Crassostrea gigas]
Length = 131
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETTTGEVYRGKLVEAEDNMNCQMSAITVTYRDGRVAQLENVYLRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|50413178|ref|XP_457218.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
gi|49652883|emb|CAG85213.1| DEHA2B05918p [Debaryomyces hansenii CBS767]
Length = 165
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTV-KLTLKGKNPVNLDHLSVRG 62
+ L N+ + +ELKNG ++G + D MN LK V + + G+ V L +RG
Sbjct: 4 LYLLTSAKNQPILVELKNGESLNGQLVNCDSWMNLTLKDVIQSSSNGETFVKLPECYIRG 63
Query: 63 NNIRYYILPDSL 74
N+I+Y LP+ +
Sbjct: 64 NHIKYLRLPEEI 75
>gi|389739973|gb|EIM81165.1| U6 snRNA-associated Sm-like protein LSm2 [Stereum hirsutum
FP-91666 SS1]
Length = 96
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L ++ V++ELKN + GT+ VD +N L +++ ++P + + + +RG+ +RY
Sbjct: 10 LTDQRVTVELKNDLSITGTLKSVDQFLNIRLDQIEVMDPARHPHMMAVKNCFIRGSVVRY 69
Query: 68 YILPDSLNLETLLVEETPR 86
LP S +++T L+E+ R
Sbjct: 70 VQLP-SEHVDTQLLEDATR 87
>gi|193659802|ref|XP_001948103.1| PREDICTED: hypothetical protein LOC100165287 isoform 1
[Acyrthosiphon pisum]
Length = 139
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 48/95 (50%), Gaps = 3/95 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV + + N+ +I+L+N T V+G + VD MN L V +T + D+ ++
Sbjct: 16 LVCLVKSVENQYTTIDLQNETSVYGLVKEVDCDMNVTLCDVTVTDPNGQRYSCDNFFLKS 75
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKP---KKPTA 94
IRY L ++++ ++ + + P KKPTA
Sbjct: 76 RLIRYVHLSQTVDVFQVMKDVIRKTFPPRVKKPTA 110
>gi|242007296|ref|XP_002424477.1| Surfeit locus protein, putative [Pediculus humanus corporis]
gi|212507895|gb|EEB11739.1| Surfeit locus protein, putative [Pediculus humanus corporis]
Length = 401
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 307 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTEISVTDPDKYPHMLSIKNC 366
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 367 FIRGSVVRYVQLPAD-EVDTQLLQDAAR 393
>gi|170047824|ref|XP_001851408.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167870100|gb|EDS33483.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 135
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 44/99 (44%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYI 69
L N + I+L+N T V G IT VD MN ++ V + +D + IRY
Sbjct: 24 LVNRNILIDLRNETSVAGKITNVDGFMNISMENVVYIDELGKQFRMDEFMIYPRYIRYIH 83
Query: 70 LPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGR 108
+PD L ++ +L + + + +PV R R +
Sbjct: 84 IPDELEIKPVLEQHFANLSGARKQQQKPVRRTYKMKRAQ 122
>gi|226510250|ref|NP_001152698.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
gi|195659125|gb|ACG49030.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
gi|413917383|gb|AFW57315.1| snRNP core Sm protein Sm-X5-like protein [Zea mays]
Length = 93
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M + +L + V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MLFFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 59 SVRGNNIRYYILP-DSLNLETL 79
+RG+ +RY +LP D ++++ L
Sbjct: 61 FIRGSVVRYVLLPQDGVDVDIL 82
>gi|406866049|gb|EKD19089.1| small nuclear ribonucleoprotein LSM2 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 104
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 11/87 (12%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS------ 59
F L + V++ELKN + GT+ VD +N L + + K P HLS
Sbjct: 11 FFKTLVDHEVTVELKNDIQIRGTLKSVDQYLNIKLDNISVVEDLKYP----HLSSVKNVF 66
Query: 60 VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP S ++T L+E+ R
Sbjct: 67 IRGSVVRYVHLPGSA-VDTALLEDATR 92
>gi|357519603|ref|XP_003630090.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
gi|355524112|gb|AET04566.1| U6 snRNA-associated Sm-like protein LSm4 [Medicago truncatula]
Length = 161
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRMPECYIRGNTIKYLRVPDEV 75
>gi|342870013|gb|EGU73372.1| hypothetical protein FOXB_16133 [Fusarium oxysporum Fo5176]
Length = 127
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G V L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDRFVRLPEVYVKGNNIKYLRVPDEI 75
>gi|357442545|ref|XP_003591550.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
gi|355480598|gb|AES61801.1| Small nuclear ribonucleoprotein sm [Medicago truncatula]
Length = 106
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 37/91 (40%), Gaps = 25/91 (27%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTL-KGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN HL+ V T G + +RGN I+Y LP SL
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVFCTSNDGDRFWYMPKCYIRGNTIKYLRLPPSL- 75
Query: 76 LETLLVEETPRVKPKKPTAGRPVGRGRGRGR 106
GRGR RGR
Sbjct: 76 -----------------------GRGRARGR 83
>gi|403222920|dbj|BAM41051.1| U6 snRNA-associated sm-like protein lsm4 [Theileria orientalis
strain Shintoku]
Length = 120
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDS 73
V IELKNG G + D MN H+ V T K G L+ +RGNN++ LP+
Sbjct: 2 VLIELKNGETYSGILDSCDSFMNMHMVNVVCTSKNGTEFWKLNECFIRGNNVKSLRLPNE 61
Query: 74 LNLETLLVEETPRVK 88
+ + EE P+ K
Sbjct: 62 --VAEIAKEEKPQSK 74
>gi|324507721|gb|ADY43268.1| U6 snRNA-associated Sm-like protein LSm4 [Ascaris suum]
Length = 130
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N + +ELKNG +G + D MN HL+ T + G + + + VRG+ I+Y
Sbjct: 12 QNHPMLVELKNGETYNGHLVSCDAWMNIHLRDAICTSRDGDRFLKMPEVYVRGSTIKYLR 71
Query: 70 LPDSLNLETLLVEETPRVKPKKPTAGR 96
+PD ++ L+ +E V+ ++ R
Sbjct: 72 IPD--DVVELVKDEVKEVRRQQKDQQR 96
>gi|363754415|ref|XP_003647423.1| hypothetical protein Ecym_6224 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891060|gb|AET40606.1| hypothetical protein Ecym_6224 [Eremothecium cymbalariae
DBVPG#7215]
Length = 95
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M FL L ++ V++ELKN + GT+ VD +N L + K P HLS
Sbjct: 1 MLFFSFLKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNNNAKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY L S+ ++T L+++ R
Sbjct: 57 VRNIFIRGSTVRYVYLNKSI-VDTNLLQDAAR 87
>gi|427786245|gb|JAA58574.1| Putative small nuclear ribonucleoprotein sm d3 [Rhipicephalus
pulchellus]
Length = 122
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLVEAEDNMNCQMCNITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFMILPDML 77
>gi|221054464|ref|XP_002258371.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193808440|emb|CAQ39143.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 116
Score = 40.8 bits (94), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
T+S+E K G + GT+ + +MN L+ V + K + L+ + +RG ++ + I PD
Sbjct: 17 TISVETKAGVLYRGTLLFAEDNMNCLLENVSVIKKDGKQILLEQVYIRGGSVSFMIFPDM 76
Query: 74 L 74
L
Sbjct: 77 L 77
>gi|346321072|gb|EGX90672.1| tRNA methyltransferase subunit GCD14, putative [Cordyceps militaris
CM01]
Length = 712
Score = 40.8 bits (94), Expect = 0.095, Method: Composition-based stats.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 8/86 (9%)
Query: 20 KNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETL 79
+ T+ + + +MN LK + +T + +LD + +RG+++R++I+PD L +
Sbjct: 621 RESTVTNSACRVAEDNMNVQLKDITVTARDGRVSHLDQVYIRGSHVRFFIVPDMLRNAPM 680
Query: 80 LVEETPRVKPKKPTAGRPVGRGRGRG 105
R GR VG RGR
Sbjct: 681 FRSSNLR--------GRGVGMARGRA 698
>gi|294653209|gb|ADF28512.1| small nuclear robonucleoprotein SMD3 [Pelinobius muticus]
Length = 122
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ + V++E G I G + + +MN + V +T + L+++ +RG+
Sbjct: 7 VKVFHEAEGHVVTLETNTGEIYRGRLVEAEDNMNCQMADVTVTYRDGRVGQLENIYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD+L
Sbjct: 67 KIRFLILPDTL 77
>gi|303315215|ref|XP_003067615.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
gi|240107285|gb|EER25470.1| LSM domain containing protein [Coccidioides posadasii C735 delta
SOWgp]
Length = 144
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 11/88 (12%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI++ +P
Sbjct: 36 VELKNGETLNGHLVNCDSWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKFLRVP---- 91
Query: 76 LETLLVEETPRVKPKKPTAGRPVGRGRG 103
EE + + +P RGRG
Sbjct: 92 ------EEVVEIARDQQQQNQPSTRGRG 113
>gi|399218474|emb|CCF75361.1| unnamed protein product [Babesia microti strain RI]
Length = 122
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG G +T D MN H++ V+ + +G ++ VRGNN++ LPD +
Sbjct: 18 VELKNGETCSGILTTCDGFMNLHMRNVVRTSREGDKFWKINECFVRGNNLKSVRLPDQV- 76
Query: 76 LETLLVEETPR 86
L EE R
Sbjct: 77 --ANLAEEESR 85
>gi|294866382|ref|XP_002764688.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
gi|239864378|gb|EEQ97405.1| Small nuclear ribonucleoprotein Sm D1, putative [Perkinsus
marinus ATCC 50983]
Length = 349
Score = 40.8 bits (94), Expect = 0.100, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L + + +ELKNG G + D MN H++ LT K G L +RGN+
Sbjct: 7 LLKTAQGQPIMVELKNGEAYSGVLANCDSWMNLHIRDAVLTSKDGDRFWKLAEAYIRGNH 66
Query: 65 IRYYILPDSL 74
I+Y +PD +
Sbjct: 67 IKYLRIPDGV 76
>gi|241958540|ref|XP_002421989.1| RNA processing complex subunit, putative; U6 snRNA-associated
protein, putative [Candida dubliniensis CD36]
gi|223645334|emb|CAX39990.1| RNA processing complex subunit, putative [Candida dubliniensis
CD36]
gi|238879887|gb|EEQ43525.1| hypothetical protein CAWG_01763 [Candida albicans WO-1]
Length = 96
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV--NLDHL 58
M F L ++ V++ELKN + GT+ VD +N L + T + P + +L
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQFLNLKLDNITCTNGQRYPYLGAVKNL 60
Query: 59 SVRGNNIRY-YILPDSLNLETLLVEETPR 86
+RG+N+RY ++ P+S++ TLL + + R
Sbjct: 61 FIRGSNVRYVHMNPNSVDC-TLLQDASRR 88
>gi|449300793|gb|EMC96805.1| hypothetical protein BAUCODRAFT_122769 [Baudoinia compniacensis
UAMH 10762]
Length = 125
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L VRGNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVNCDTYMNLTLKEVVQTSPEGDKFFRLPECYVRGNNIKYLRVPDEI 75
>gi|449015531|dbj|BAM78933.1| snRNP core Sm-like protein SmX5 [Cyanidioschyzon merolae strain
10D]
Length = 101
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 5/91 (5%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV-NLDH-- 57
M L L E +++ELKN + G + VD +N L V++ PV L H
Sbjct: 1 MFFTAILRTLIGEDITVELKNDLSIRGRLEAVDQYLNVRLAQVQVHTAAAPPVLQLLHGS 60
Query: 58 LSVRGNNIRYYILP-DSLNLETLLVEETPRV 87
+VRG+ IRY LP + ++ E LL E T RV
Sbjct: 61 CTVRGSCIRYIHLPVEKVDTE-LLQEATRRV 90
>gi|68064470|ref|XP_674219.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4 [Plasmodium berghei strain ANKA]
gi|56492635|emb|CAH99966.1| U6 snRNA associated Sm-like protein Ls; U6 snRNA associated
Sm-like protein LsM4, putative [Plasmodium berghei]
Length = 130
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N+ V +ELKNG G + D MN H+K + T K G + VRG++++Y
Sbjct: 10 QNQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGSSVKYIR 69
Query: 70 LPDSLNLETLLVEETPRVKPK 90
+ D +E +EET K +
Sbjct: 70 VQDQA-IEN-AIEETAEQKSR 88
>gi|295674033|ref|XP_002797562.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226280212|gb|EEH35778.1| small nuclear ribonucleoprotein [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 124
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 45/93 (48%), Gaps = 12/93 (12%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ T +G L + VRGNNI+Y +P+
Sbjct: 17 VELKNGETLNGHLVNCDNWMNLILKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEE-- 74
Query: 76 LETLLVEETPRVKPKKPTAGRPVGRGRGRGRGR 108
+V+ K +P RGRG + R
Sbjct: 75 ----IVDLA-----KDQQQNQPSNRGRGSQQHR 98
>gi|219124066|ref|XP_002182333.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406294|gb|EEC46234.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 135
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 4/87 (4%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLT-LKGKNPVNLDHLSVRGNN 64
L N + +ELK G +G + D MN +L+ V T G++ L +RG++
Sbjct: 6 LLRAANGSPILVELKGGDTYNGRVVNCDTFMNMNLQDVICTSADGEHFSKLPSCYIRGSS 65
Query: 65 IRYYILPDSLNLETLLV--EETPRVKP 89
I+Y LP SL LET EE R P
Sbjct: 66 IKYLRLPPSL-LETAAAQQEEEERNSP 91
>gi|321456914|gb|EFX68011.1| hypothetical protein DAPPUDRAFT_63450 [Daphnia pulex]
Length = 118
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 36/71 (50%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + ++ E G I G + + +MN + + +T + L+++ +RG+
Sbjct: 7 IKVLHEAEGHIITCETNTGEIYRGKLVEAEDNMNCQMTNITVTYRDGRVAQLENVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|390602179|gb|EIN11572.1| U6 snRNA-associated Sm-like protein LSm2, partial [Punctularia
strigosozonata HHB-11173 SS5]
Length = 114
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L ++ V++ELKN + GT+ VD +N L + + + ++P + + + +RG+ +RY
Sbjct: 9 LTDQRVTVELKNDLCITGTLKSVDQFLNIRLDGISVLDEARHPHMMAVKNCFIRGSVVRY 68
Query: 68 YILPDSLNLETLLVEETPR 86
LP + +++T L+E+ R
Sbjct: 69 VQLP-AEHVDTQLLEDATR 86
>gi|195655461|gb|ACG47198.1| U6 snRNA-associated Sm-like protein LSm4 [Zea mays]
Length = 146
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYXRGNTIKYLRVPDEV 75
>gi|389642189|ref|XP_003718727.1| U6 snRNA-associated Sm-like protein LSm2 [Magnaporthe oryzae
70-15]
gi|351641280|gb|EHA49143.1| U6 snRNA-associated Sm-like protein LSm2 [Magnaporthe oryzae
70-15]
gi|440468055|gb|ELQ37238.1| snRNA-associated protein [Magnaporthe oryzae Y34]
gi|440489015|gb|ELQ68696.1| snRNA-associated protein [Magnaporthe oryzae P131]
Length = 97
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L + +++ELKN + GT+ VD +N L + + K P HLS
Sbjct: 1 MLFFSFFKTLIDVEITVELKNSIQIRGTLKSVDQYLNLKLDDISVVEDIKYP----HLSA 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
+RG+ +RY LP S +++ L+E+ R + A R
Sbjct: 57 VKNVFIRGSVVRYIHLPAS-HVDVPLLEDATRREAASTAAKR 97
>gi|440638708|gb|ELR08627.1| hypothetical protein GMDG_03318 [Geomyces destructans 20631-21]
Length = 124
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVSCDTWMNLTLKEVVQTSPEGDKFFRLAEVYVKGNNIKYLRVPDEI 75
>gi|159129598|gb|EDP54712.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus A1163]
Length = 105
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI+Y +P+ +
Sbjct: 3 VELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEEI- 61
Query: 76 LETLLVEETPRVKPK 90
+V+E + +P+
Sbjct: 62 --VEMVKEQQQSQPQ 74
>gi|320590330|gb|EFX02773.1| bar domain containing protein [Grosmannia clavigera kw1407]
Length = 1158
Score = 40.8 bits (94), Expect = 0.11, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + G + + + + V+GNNI+Y +PD +
Sbjct: 381 VELKNGETLNGHLVQCDTWMNLTLKGVVQTSPDGDSFMRIPEVYVKGNNIKYLRVPDEI 439
>gi|326428074|gb|EGD73644.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 112
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKL--TLKGKNPVNLDHL 58
M F L +TV +ELKN + GT+T VD +N L + + K + V++ +
Sbjct: 18 MLFTSFFKTLVGKTVVVELKNDLSIQGTLTSVDQFLNIKLDDITVGNVDKYAHMVSVKNC 77
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ IRY LP +++T L+++ R
Sbjct: 78 FIRGSVIRYIQLPPE-HVDTQLLQDATR 104
>gi|332376551|gb|AEE63415.1| unknown [Dendroctonus ponderosae]
Length = 135
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 50/109 (45%), Gaps = 5/109 (4%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L N + +ELKNG +G + D MN +L+ V T + G + +RG+
Sbjct: 6 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 65
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRG 113
I+Y +PD + ++ EET V K + + GRG R R RG
Sbjct: 66 IKYLRIPDE--VIDMVKEET--VTKNKQSRDQKGGRGGQNQRNRPAARG 110
>gi|414876858|tpg|DAA53989.1| TPA: hypothetical protein ZEAMMB73_426325, partial [Zea mays]
Length = 112
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|71027801|ref|XP_763544.1| U6 snRNA-associated protein [Theileria parva strain Muguga]
gi|68350497|gb|EAN31261.1| U6 snRNA-associated protein, putative [Theileria parva]
Length = 141
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
IELKNG G + D MN H+ V T K G + LD +RGN ++ LP+ +
Sbjct: 18 IELKNGETYSGILDSCDAFMNMHMVNVVCTSKSGTDFWKLDECFIRGNTVKSLRLPNEV- 76
Query: 76 LETLLVEETPR 86
E E+ PR
Sbjct: 77 AEIAKEEKRPR 87
>gi|320591852|gb|EFX04291.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 113
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS------ 59
F L + TV++ELKN + GT+ VD +N L + + + K P H+S
Sbjct: 18 FFKTLIDTTVTVELKNDIQIRGTLKSVDQYLNIKLDDITVVEEIKYP----HMSAVKNVF 73
Query: 60 VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + +LL + T R
Sbjct: 74 IRGSVVRYVHLPAAAVDVSLLEDATRR 100
>gi|219113311|ref|XP_002186239.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209583089|gb|ACI65709.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 98
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 3/86 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
+ F L + V++ELKN ++ GT+ VD +N L V++ + P V L + V
Sbjct: 3 FLSFFKTLVGKEVAVELKNDVVLTGTLHSVDQYLNIKLIHVQVVQPERYPQLVALKSVFV 62
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ +R YI D +++T L+++ R
Sbjct: 63 RGSVVR-YIQIDPQHVDTELLQDAAR 87
>gi|384254045|gb|EIE27519.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 117
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDS 73
V +ELKNG +G + D MN HL+ V T K G + +RGN I+Y +PD
Sbjct: 15 VLVELKNGETYNGHMVQCDSWMNVHLREVICTSKDGDRFWRIPETYIRGNTIKYLRVPDE 74
Query: 74 L 74
+
Sbjct: 75 V 75
>gi|380477058|emb|CCF44358.1| small nuclear ribonucleoprotein [Colletotrichum higginsianum]
Length = 170
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G V + + V+GNNI+Y +PD +
Sbjct: 56 VELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYVKGNNIKYLRVPDDI 114
>gi|389743937|gb|EIM85121.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 130
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTV-KLTLKGKNPVNLDHLSVRGNN 64
L N+ + +ELKNG +G + D MN L+ V + + G+ + +RG+
Sbjct: 6 LLNAAQNKPMLVELKNGENFNGHLVNCDNFMNITLREVYQTSADGERFWKVKECYIRGST 65
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
I+Y +P++L L+ + E+ + K G RGRGRG
Sbjct: 66 IKYIRVPETL-LDVVKEEQLRAREAGKSQRGGLNDRGRGRG 105
>gi|290984572|ref|XP_002675001.1| predicted protein [Naegleria gruberi]
gi|284088594|gb|EFC42257.1| predicted protein [Naegleria gruberi]
Length = 130
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +GT+T D MN +L+ V T + G +D + +RG ++Y + D +
Sbjct: 3 VELKNGETFNGTLTNCDQFMNMNLEDVTCTSRDGTRFWKMDKVYIRGYTLKYIRILDEII 62
Query: 76 LETLLVEETPRVKPKKP 92
+ ++ R KP++
Sbjct: 63 NKVKEEQKKSRSKPQQQ 79
>gi|145344044|ref|XP_001416549.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576775|gb|ABO94842.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 95
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/87 (22%), Positives = 39/87 (44%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + V++ELK G G + + + N + V + ++H+ +RG+
Sbjct: 9 VKLLHESEGHVVTVELKTGETYRGQLVESEDNWNCQMTDVTHVGRDGKESKMEHVYIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPK 90
+R ++PD L + P+ PK
Sbjct: 69 KVRMMVIPDMLKHAPMFKRIDPKFDPK 95
>gi|400596410|gb|EJP64184.1| small nuclear ribonucleoprotein [Beauveria bassiana ARSEF 2860]
Length = 116
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G V L + V+GNNI+Y +P+ +
Sbjct: 3 VELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPEEI 61
>gi|194223357|ref|XP_001491793.2| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Equus
caballus]
Length = 114
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGN 63
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +RG+
Sbjct: 25 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGS 84
Query: 64 NIRYYILPDSLNLETLLVEETPR 86
+RY LP + ++T L+++ R
Sbjct: 85 VVRYVQLP-ADEVDTQLLQDAAR 106
>gi|403373349|gb|EJY86592.1| U6 snRNA-associated Sm-like protein LSm4, putative [Oxytricha
trifallax]
Length = 99
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS--VRGNNIRY 67
N+ V++ELKN + GT+ VD S+N L +K+ + NP L + +RGN IRY
Sbjct: 13 NQRVTLELKNDLKIQGTLVSVDESLNIQLTNMKIADEINNPYLLSCKNGFIRGNVIRY 70
>gi|388855778|emb|CCF50562.1| related to LSM2-Sm-like (Lsm) protein [Ustilago hordei]
Length = 96
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 3/79 (3%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L + V+IELKN + GT+ VD +N + +++ + K+P + + +RG+ +RY
Sbjct: 10 LTGQQVTIELKNDLAIQGTLKSVDQFLNFKVDNIRVLNEAKHPHMMAVKSAFIRGSVVRY 69
Query: 68 YILPDSLNLETLLVEETPR 86
+P + ++T L+E+ R
Sbjct: 70 VHIP-AAAVDTQLLEDATR 87
>gi|344307226|ref|XP_003422283.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Loxodonta
africana]
Length = 133
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGN 63
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +RG+
Sbjct: 44 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGS 103
Query: 64 NIRYYILPDSLNLETLLVEETPR 86
+RY LP ++T L+++ R
Sbjct: 104 VVRYVQLPAD-EVDTQLLQDAAR 125
>gi|196006814|ref|XP_002113273.1| hypothetical protein TRIADDRAFT_8416 [Trichoplax adhaerens]
gi|190583677|gb|EDV23747.1| hypothetical protein TRIADDRAFT_8416, partial [Trichoplax
adhaerens]
Length = 101
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 38/71 (53%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + +++E +G + G ++ + +MN + +V +T + L + VRG+
Sbjct: 7 VKILHEAEGHVITLETVSGEVYRGKLSEAEDNMNCQMYSVNVTYRDGRTAYLQQIFVRGS 66
Query: 64 NIRYYILPDSL 74
+R+ ++PD L
Sbjct: 67 KVRFIVIPDML 77
>gi|118387719|ref|XP_001026962.1| Sm protein [Tetrahymena thermophila]
gi|89308732|gb|EAS06720.1| Sm protein [Tetrahymena thermophila SB210]
Length = 2269
Score = 40.4 bits (93), Expect = 0.13, Method: Composition-based stats.
Identities = 25/97 (25%), Positives = 42/97 (43%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
V+ L + + V+IELK G G + + +MN L V + + L + +RG
Sbjct: 7 VKILRESESHVVTIELKTGDQFRGYLAESEDTMNVRLDNVTMINRNGKQSQLQSVYLRGA 66
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGR 100
IR+ ++PD + + K K +A R R
Sbjct: 67 QIRFIVIPDFFKNAPMFKRIKAQSKNKNKSAIREKAR 103
>gi|119481265|ref|XP_001260661.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|146322938|ref|XP_755534.2| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus fumigatus
Af293]
gi|119408815|gb|EAW18764.1| small nuclear ribonucleoprotein [Neosartorya fischeri NRRL 181]
gi|129558535|gb|EAL93496.2| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
fumigatus Af293]
Length = 119
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEEI- 75
Query: 76 LETLLVEETPRVKPK 90
+V+E + +P+
Sbjct: 76 --VEMVKEQQQSQPQ 88
>gi|347838545|emb|CCD53117.1| hypothetical protein [Botryotinia fuckeliana]
Length = 565
Score = 40.4 bits (93), Expect = 0.14, Method: Composition-based stats.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRYY 68
++ V++ELKN + G + VD +N L +++ + K P ++ ++ +RG+ +RY
Sbjct: 478 SDHEVTVELKNDIQIKGILKSVDQYLNIKLDDIQVVEELKYPHLSSVKNVFIRGSVVRYV 537
Query: 69 ILPDSLNLETLLVEETPRVKPKKPTAGR 96
LP + LL + T R ++ T G+
Sbjct: 538 HLPGGVIDTALLEDATRREAAQQATKGK 565
>gi|224131146|ref|XP_002321012.1| predicted protein [Populus trichocarpa]
gi|222861785|gb|EEE99327.1| predicted protein [Populus trichocarpa]
Length = 151
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL+ V T K G +RGN I+Y +PD +
Sbjct: 17 VELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDRFWRTPECYIRGNTIKYLRVPDEV 75
>gi|389583620|dbj|GAB66354.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium cynomolgi
strain B]
Length = 153
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYIL 70
N+ V +ELKNG G + D MN H+K + T K G + VRGN+++Y +
Sbjct: 40 NQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNSVKYIRV 99
Query: 71 PDSLNLETLLVEETPRVKPK 90
D + +EET K +
Sbjct: 100 QDQAIDQA--IEETNEQKAR 117
>gi|115497280|ref|NP_001069947.1| small nuclear ribonucleoprotein Sm D3 [Bos taurus]
gi|86437979|gb|AAI12525.1| Small nuclear ribonucleoprotein D3 polypeptide 18kDa [Bos taurus]
Length = 125
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 49/108 (45%), Gaps = 15/108 (13%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYR-DGLAQLEQVYIRGS 65
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRG 111
IR+ ILPD +++ P +K K + +G G GRG+
Sbjct: 66 KIRFLILPD-------MLKNAPMLKSMK-------NKNQGSGAGRGKA 99
>gi|302762304|ref|XP_002964574.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
gi|300168303|gb|EFJ34907.1| hypothetical protein SELMODRAFT_81834 [Selaginella
moellendorffii]
Length = 90
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP----VNLDHLSVRGNNIRYYILPD 72
+ELKNG +G + D MN HL+ V T K + + +RGN I+Y +PD
Sbjct: 17 VELKNGETYNGHLVSCDSWMNIHLREVICTSKASDDGDRFWRMPECYIRGNTIKYLRVPD 76
Query: 73 SLN 75
++
Sbjct: 77 EVS 79
>gi|212537193|ref|XP_002148752.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
gi|210068494|gb|EEA22585.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
marneffei ATCC 18224]
Length = 170
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ T +G L + VRGNNI+Y +P+ +
Sbjct: 69 VELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEEI 127
>gi|58393584|ref|XP_320178.2| AGAP012380-PA [Anopheles gambiae str. PEST]
gi|55234277|gb|EAA00211.2| AGAP012380-PA [Anopheles gambiae str. PEST]
Length = 143
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + NL+++ +RG+
Sbjct: 7 IKVLHEAEGHVVTCETITGEVYRGKLIEAEDNMNCQMTQITVTYRDGRVGNLENVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|409080918|gb|EKM81278.1| hypothetical protein AGABI1DRAFT_112946 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426197836|gb|EKV47763.1| hypothetical protein AGABI2DRAFT_192916 [Agaricus bisporus var.
bisporus H97]
Length = 131
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTV-KLTLKGKNPVNLDHLSVRG 62
+ L N+ + +ELKNG +G + D MN L+ V + + G L +RG
Sbjct: 4 LSLLSAAQNKPMLVELKNGETFNGHLVNCDNFMNITLREVYQTSADGDRFWKLKECYIRG 63
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRG 107
+ I+Y +PD+L L+ + E+ + + + G G RG GRG
Sbjct: 64 STIKYLRVPDTL-LDQVKEEQNRAREANRNSRGGHTGPNRG-GRG 106
>gi|294874388|ref|XP_002766931.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
gi|239868306|gb|EEQ99648.1| U6 snRNP protein Lsm2, putative [Perkinsus marinus ATCC 50983]
Length = 103
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 1 MKLVRFLMKL--NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLD 56
M F L +N V++E+KN + GT+ VD N LK + + + P ++L
Sbjct: 1 MLFFDFFQNLVDSNAQVTVEMKNDVQITGTLPAVDQYFNVKLKNISINNPEQYPHLLSLR 60
Query: 57 HLSVRGNNIRYYILPD 72
+ +RG+ +RY LPD
Sbjct: 61 NCFIRGSVVRYVHLPD 76
>gi|340517649|gb|EGR47892.1| predicted protein [Trichoderma reesei QM6a]
Length = 152
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G + L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDEI 75
>gi|212544302|ref|XP_002152305.1| small nuclear ribonucleoprotein (LSM2), putative [Talaromyces
marneffei ATCC 18224]
gi|210065274|gb|EEA19368.1| small nuclear ribonucleoprotein (LSM2), putative [Talaromyces
marneffei ATCC 18224]
Length = 103
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L N V++ELKN + GT+ VD +N L V + K P ++ ++
Sbjct: 1 MLFFSFFKTLTNHIVTVELKNDIRIRGTLKSVDQYLNIKLDDVDVLDLDKYPHLSSVKNM 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +LP S ++ L+E+ R
Sbjct: 61 FIRGSVVRYVVLP-SAEVDRGLLEDATR 87
>gi|313241313|emb|CBY33589.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYIL 70
N + +ELKNG +G + D MN L+ V T + G + ++ VRG+ I+Y +
Sbjct: 12 NHPMLVELKNGETYNGHLVNCDNWMNLQLREVICTSRDGDHFWRMNECYVRGSTIKYLRI 71
Query: 71 PDSLNLETLLVEETPRVKPKK 91
PD + ++ + E T R+K K
Sbjct: 72 PDEV-IDMVKEENTARMKAAK 91
>gi|313236950|emb|CBY12197.1| unnamed protein product [Oikopleura dioica]
Length = 141
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYIL 70
N + +ELKNG +G + D MN L+ V T + G + ++ VRG+ I+Y +
Sbjct: 12 NHPMLVELKNGETYNGHLVNCDNWMNLQLREVICTSRDGDHFWRMNECYVRGSTIKYLRI 71
Query: 71 PDSLNLETLLVEETPRVKPKK 91
PD + ++ + E T R+K K
Sbjct: 72 PDEV-IDMVKEENTARMKAAK 91
>gi|323445642|gb|EGB02152.1| hypothetical protein AURANDRAFT_35508 [Aureococcus
anophagefferens]
Length = 87
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
V+IE KNG G + + +MN LK T N ++H+ +RG+ I ++I P+ L
Sbjct: 24 VTIECKNGDTYRGFLDETEDNMNCVLKDATRTDAKGNKSQVEHIFLRGSQIAFFIFPNML 83
>gi|154311062|ref|XP_001554861.1| hypothetical protein BC1G_06649 [Botryotinia fuckeliana B05.10]
Length = 690
Score = 40.4 bits (93), Expect = 0.15, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELK+G ++G + D MN LK V+ + G L + V+GNNI+Y +PD +
Sbjct: 18 VELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVKGNNIKYLRMPDEI 76
>gi|115725270|ref|XP_001200318.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Strongylocentrotus purpuratus]
gi|115896565|ref|XP_001200071.1| PREDICTED: U7 snRNA-associated Sm-like protein LSm10-like
[Strongylocentrotus purpuratus]
Length = 124
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%)
Query: 16 SIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
++EL+N G + VD MN + V ++D + ++ + +RY +PD +N
Sbjct: 30 TVELRNECSATGYVVDVDGFMNVTMSKVLFVNMDGEKTHMDSIFIQASLVRYVQIPDDIN 89
Query: 76 LETLLVEETPRVKPKKPTAGRPVG 99
+ + +E + P++P G G
Sbjct: 90 MVKAMKKELMMMNPRRPLPGSMAG 113
>gi|403369356|gb|EJY84523.1| hypothetical protein OXYTRI_17631 [Oxytricha trifallax]
Length = 574
Score = 40.4 bits (93), Expect = 0.16, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 35 SMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+MN L V +T K +LD + VRG+ +R+ I+PD L + + K K
Sbjct: 6 TMNMRLDDVYVTGKDGRQYHLDQVFVRGSQVRFIIIPDMLKNSPMFKRIANQAKKGKNAL 65
Query: 95 GRPVGRGRGRGRG 107
+ +GRGRG G
Sbjct: 66 ---LAKGRGRGIG 75
>gi|170585533|ref|XP_001897537.1| small nuclear ribonucleoprotein Sm D3 [Brugia malayi]
gi|158595042|gb|EDP33618.1| small nuclear ribonucleoprotein Sm D3, putative [Brugia malayi]
Length = 91
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +++E G + G + + +MN + V +T + +LD++ +RG+
Sbjct: 8 IKILHEAEGHVITLETTIGEVYRGKLNEAEDNMNCQMSEVTVTYRDGRTHHLDNVFIRGS 67
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 68 KIRFMILPDML 78
>gi|156098332|ref|XP_001615198.1| U6 snRNA associated Sm-like protein Lsm4 [Plasmodium vivax Sal-1]
gi|148804072|gb|EDL45471.1| U6 snRNA associated Sm-like protein Lsm4, putative [Plasmodium
vivax]
Length = 127
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYIL 70
N+ V +ELKNG G + D MN H+K + T K G + VRGN+++Y +
Sbjct: 13 NQPVMVELKNGETYSGFLVFCDRFMNLHMKNIICTSKDGDKFWKISECYVRGNSVKYIRV 72
Query: 71 PDSLNLETLLVEETPRVKPK 90
D + +EET K +
Sbjct: 73 QDQAIDQA--IEETNEQKAR 90
>gi|427783433|gb|JAA57168.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 139
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKN-PVNLDHLSVR 61
LV L L +IEL+N V GT+ VD MN L T+ G N V+
Sbjct: 14 LVLMLQSLRGRQTTIELRNELSVWGTVESVDAFMNVDLSDA--TVVGPNGEETYASFFVQ 71
Query: 62 GNNIRYYILPDSLNL-ETLLVEETPRVKPKK--PTA 94
G +RY +PD +++ +L ++ T R + + PT+
Sbjct: 72 GRQVRYIHIPDDIDMAASLQLQNTRRARQDQEGPTS 107
>gi|395848095|ref|XP_003796696.1| PREDICTED: uncharacterized protein LOC100963645 [Otolemur
garnettii]
Length = 312
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRG 62
+ L N + +ELKNG +G + D MN +L+ V T + G + +RG
Sbjct: 177 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRG 236
Query: 63 NNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRG 105
+ I+Y +PD + ++ EE V +GRGRG
Sbjct: 237 STIKYLRIPD--EIIDMVKEEV-------------VAKGRGRG 264
>gi|157135921|ref|XP_001663620.1| hypothetical protein AaeL_AAEL013425 [Aedes aegypti]
gi|403183364|gb|EJY58040.1| AAEL013425-PB [Aedes aegypti]
Length = 141
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYI 69
L N + I+L+N + V G IT VD MN ++ V L + ++ + +RY
Sbjct: 24 LVNRNILIDLRNESSVAGKITNVDGFMNISMENVVLIDQLGKHFRMEEFMIYPRYVRYIH 83
Query: 70 LPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGR 108
+P+S+ + L E R +KP A PV R R +
Sbjct: 84 IPESIEIVPALEEHIKRETTRKPRA--PVKRTYKMKRAQ 120
>gi|13994221|ref|NP_085100.1| U6 snRNA-associated Sm-like protein LSm2 isoform 1 [Mus musculus]
gi|11138517|gb|AAG31423.1|AF204146_1 snRNP core protein SMX5 [Mus musculus]
gi|11138519|gb|AAG31424.1|AF204147_1 snRNP core protein SMX5 [Mus musculus]
gi|11138521|gb|AAG31425.1|AF204148_1 snRNP core protein SMX5 [Mus musculus]
gi|11138523|gb|AAG31426.1|AF204149_1 snRNP core protein SMX5 [Mus musculus]
gi|11138525|gb|AAG31427.1|AF204150_1 snRNP core protein SMX5 [Mus musculus]
gi|11138527|gb|AAG31428.1|AF204151_1 snRNP core protein SMX5 [Mus musculus]
gi|11138529|gb|AAG31429.1|AF204152_1 snRNP core protein SMX5 [Mus musculus]
gi|16118493|gb|AAL14449.1|AF397035_2 G7b alternative form [Mus musculus]
gi|16118502|gb|AAL14457.1|AF397036_2 G7b alternative form [Mus musculus]
gi|2463649|gb|AAB72038.1| snRNP core Sm protein homolog Sm-X5 [Mus musculus]
gi|3986753|gb|AAC84150.1| smRNP [Mus musculus]
gi|3986775|gb|AAC84171.1| smRNP [Mus musculus]
gi|29436560|gb|AAH49543.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae) [Mus
musculus]
gi|148694756|gb|EDL26703.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Mus musculus]
Length = 131
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +
Sbjct: 39 FYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFI 98
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ +RY LP + ++T L+++ R
Sbjct: 99 RGSVVRYVQLP-ADEVDTQLLQDAAR 123
>gi|323452593|gb|EGB08466.1| hypothetical protein AURANDRAFT_25994 [Aureococcus
anophagefferens]
Length = 139
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
IELKNG +G + D MN +L+ V T + G L +RGN+I+Y +PD +
Sbjct: 17 IELKNGDTYNGRLVSADTWMNVNLEEVICTSRDGDRFWKLKECYIRGNSIKYLRIPDEI 75
>gi|167516422|ref|XP_001742552.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163779176|gb|EDQ92790.1| predicted protein [Monosiga brevicollis MX1]
Length = 115
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRG 62
+ L +N + +ELKNG +G ++ D MN ++ V LT K G + +RG
Sbjct: 4 LSLLRAASNHMMLVELKNGETYNGHLSKCDNYMNITMRDVTLTSKDGDRFWKMPECYIRG 63
Query: 63 NNIRYYILPDSLNLETLLVEE 83
NNI++ +PD + ++ ++ EE
Sbjct: 64 NNIKFLRIPDEV-IDQVVEEE 83
>gi|308321147|gb|ADO27727.1| small nuclear ribonucleoprotein sm d3 [Ictalurus furcatus]
Length = 128
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|313234834|emb|CBY24778.1| unnamed protein product [Oikopleura dioica]
gi|313246057|emb|CBY35020.1| unnamed protein product [Oikopleura dioica]
Length = 99
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 48/88 (54%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V++ELKN + GT+ VD +N L + +T + K P +++ +
Sbjct: 1 MLFYSFFKSLVGKEVTVELKNDLAITGTLHSVDQYLNIKLNDIFVTEQEKYPHLLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP + ++ L+++T R
Sbjct: 61 FIRGSVVRYVRLP-AEEIDHQLLQDTAR 87
>gi|325182649|emb|CCA17104.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 133
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
TVSIE+K+G I G + + +MN LK T N +++ + VRG+ I + + PD
Sbjct: 23 TVSIEMKSGEIYRGYLEETEDNMNCVLKEAMRTDINGNTTHVELVYVRGSQILFIVFPDM 82
Query: 74 L 74
L
Sbjct: 83 L 83
>gi|395533886|ref|XP_003768980.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Sarcophilus
harrisii]
Length = 142
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +
Sbjct: 50 FYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFI 109
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ +RY LP ++T L+++ R
Sbjct: 110 RGSVVRYVQLPAD-EVDTQLLQDAAR 134
>gi|412992977|emb|CCO16510.1| U6 snRNA-associated Sm-like protein LSm4 [Bathycoccus prasinos]
Length = 122
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN HL V T K G L+ +RGN I+Y + + +
Sbjct: 17 VELKNGETYNGVLNACDAWMNVHLTKVVCTNKDGDRFHELETCFIRGNTIKYMCVQEEI 75
>gi|358394136|gb|EHK43537.1| hypothetical protein TRIATDRAFT_266952 [Trichoderma atroviride
IMI 206040]
Length = 130
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G + L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDEI 75
>gi|254570317|ref|XP_002492268.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032066|emb|CAY69988.1| Hypothetical protein PAS_chr3_0060 [Komagataella pastoris GS115]
Length = 86
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNN 64
FL ++ E V +++++GT HG + +D MN L+ KG+ + +RG N
Sbjct: 10 EFLSRITGEKVVVKMRDGTECHGALQSIDGFMNVALENTVGKYKGETTKTYGDVFIRGTN 69
Query: 65 IRYYILPDSLNLETLL 80
+Y +L S+ LE LL
Sbjct: 70 GKYSLLS-SILLERLL 84
>gi|242809941|ref|XP_002485479.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716104|gb|EED15526.1| U6 snRNA-associated Sm-like protein LSM4, putative [Talaromyces
stipitatus ATCC 10500]
Length = 118
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ T +G L + VRGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLVNCDNWMNLTLKEVVQTTPEGDRFFRLPEVYVRGNNIKYLRVPEEI 75
>gi|21553911|gb|AAM62994.1| snRNP core Sm protein Sm-X5-like protein [Arabidopsis thaliana]
Length = 93
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M + L + V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 59 SVRGNNIRYYILP-DSLNLETL 79
+RG+ +RY LP D ++++ L
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLL 82
>gi|255719896|ref|XP_002556228.1| KLTH0H08008p [Lachancea thermotolerans]
gi|238942194|emb|CAR30366.1| KLTH0H08008p [Lachancea thermotolerans CBS 6340]
Length = 95
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L ++ V++ELKN + GT+ VD +N L + + + K P HLS
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCSNESKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY L ++ ++T L+++ R
Sbjct: 57 VRNIFIRGSTVRYVYLNKNM-VDTNLLQDAAR 87
>gi|260064054|ref|NP_001004073.1| LSM2 homolog, U6 small nuclear RNA associated isoform 1 [Rattus
norvegicus]
gi|46237602|emb|CAE83980.1| LSM2 homolog, U6 small nuclear RNA associated [S. cerevisiae]
[Rattus norvegicus]
gi|149028028|gb|EDL83479.1| rCG38360, isoform CRA_e [Rattus norvegicus]
Length = 131
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +
Sbjct: 39 FYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFI 98
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ +RY LP ++T L+++ R
Sbjct: 99 RGSVVRYVQLPAD-EVDTQLLQDAAR 123
>gi|384497172|gb|EIE87663.1| hypothetical protein RO3G_12374 [Rhizopus delemar RA 99-880]
Length = 119
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 20/119 (16%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + +S+ELK G + G + L+ + +T + LD + +RG+
Sbjct: 7 IKLLHEAQGHIISLELKTGQLYRGKL----------LEDITVTARDGRVSQLDQVYIRGS 56
Query: 64 NIRYYILPDSLNLETLLVEETP--------RVKPKKPTAGRPVGRGRGRG-RGRGRGRG 113
++R++I+PD L + P + + T R + RGRG RG RGRG
Sbjct: 57 HVRFFIVPDMLKNAPMFKGAGPGGLKGRGIGLGRGRATVAR-AQQARGRGMRGTFRGRG 114
>gi|291230978|ref|XP_002735441.1| PREDICTED: LSM2 homolog, U6 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 96
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQFLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
>gi|334323708|ref|XP_001376243.2| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Monodelphis domestica]
Length = 167
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +
Sbjct: 75 FYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFI 134
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ +RY LP + ++T L+++ R
Sbjct: 135 RGSVVRYVQLP-ADEVDTQLLQDAAR 159
>gi|296422411|ref|XP_002840754.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636977|emb|CAZ84945.1| unnamed protein product [Tuber melanosporum]
Length = 79
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 8/70 (11%)
Query: 36 MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAG 95
MN L+ + +T + +LD + +RG+++R++I+PD L + R G
Sbjct: 1 MNVQLRDITVTARDGRVSHLDQVYIRGSHVRFFIVPDMLRNAPMFRSRAVR--------G 52
Query: 96 RPVGRGRGRG 105
R VG RGR
Sbjct: 53 RGVGLARGRA 62
>gi|85107173|ref|XP_962325.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
gi|28923928|gb|EAA33089.1| hypothetical protein NCU07683 [Neurospora crassa OR74A]
Length = 130
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN L+ V+ + +G V L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLPEVYVKGNNIKYLRVPDDV 75
>gi|453086958|gb|EMF14999.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 138
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELK G ++G + D MN LK V+ + +G + L VRGNNI+Y +PD +
Sbjct: 17 VELKTGETLNGHLVSCDTYMNITLKEVVQTSPEGDHFFRLAECYVRGNNIKYLRVPDEV 75
>gi|345488169|ref|XP_001605095.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Nasonia
vitripennis]
Length = 95
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPGD-EVDTQLLQDAAR 87
>gi|402223919|gb|EJU03982.1| U6 snRNA-associated Sm-like protein LSm2 [Dacryopinax sp. DJM-731
SS1]
Length = 96
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 47/88 (53%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M + L ++ V++ELKN + GT+ VD +N L + + K+P + + +
Sbjct: 1 MLIFSVFKTLTDQIVTVELKNDLCITGTLKSVDQFLNIRLDKISVVDPEKHPHMMAVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY +P + ++T L+E+ R
Sbjct: 61 FIRGSVVRYVQIP-ATAVDTQLLEDATR 87
>gi|358382645|gb|EHK20316.1| hypothetical protein TRIVIDRAFT_68894 [Trichoderma virens Gv29-8]
Length = 129
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G + L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDEI 75
>gi|328849372|gb|EGF98554.1| hypothetical protein MELLADRAFT_113458 [Melampsora larici-populina
98AG31]
Length = 161
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRY 67
L + V+IELKN + GT+ VD +N L+ +K+ + + P + + + +RG+ +RY
Sbjct: 28 LTGQEVTIELKNDLAIQGTLASVDQFLNLKLENIKVLDQERYPHMMAVKNCFIRGSVVRY 87
Query: 68 YILPDSLNLETLLVEETPR 86
+P + ++T L+E+ R
Sbjct: 88 VQIPKN-AVDTQLLEDATR 105
>gi|323454301|gb|EGB10171.1| hypothetical protein AURANDRAFT_36815 [Aureococcus anophagefferens]
Length = 113
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 7/100 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+IELKNG I G + + +MN + V +T + L+++ +RG+
Sbjct: 12 IKLLHEGEGHMVTIELKNGEIYRGHLDESEETMNCLVTDVVVTARDGRVTKLENVYIRGS 71
Query: 64 NIR-----YYILPDSLNLETLL--VEETPRVKPKKPTAGR 96
I+ + ILPD L + V+E + KP G+
Sbjct: 72 QIKRERRAFMILPDLLKHSPVFEKVKELKKADDAKPRRGQ 111
>gi|354492832|ref|XP_003508548.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Cricetulus griseus]
Length = 122
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 45/83 (54%), Gaps = 3/83 (3%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGN 63
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +RG+
Sbjct: 33 FFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGS 92
Query: 64 NIRYYILPDSLNLETLLVEETPR 86
+RY LP + ++T L+++ R
Sbjct: 93 VVRYVQLP-ADEVDTQLLQDAAR 114
>gi|255712429|ref|XP_002552497.1| KLTH0C06248p [Lachancea thermotolerans]
gi|238933876|emb|CAR22059.1| KLTH0C06248p [Lachancea thermotolerans CBS 6340]
Length = 175
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72
+ + IELKNG + G +T VD MN L V T + V L + VRGN I+Y L D
Sbjct: 13 QQLVIELKNGETIVGQLTNVDNWMNLTLTDVTHT-SASDTVKLSEIYVRGNFIKYIKLQD 71
Query: 73 SL 74
+
Sbjct: 72 DV 73
>gi|110760170|ref|XP_001120188.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Apis
mellifera]
gi|340719471|ref|XP_003398177.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Bombus
terrestris]
gi|380029303|ref|XP_003698316.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Apis
florea]
Length = 95
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLIGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPGD-EVDTQLLQDAAR 87
>gi|440494060|gb|ELQ76472.1| Small nuclear ribonucleoprotein Sm D3 [Trachipleistophora
hominis]
Length = 90
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + N +++EL NGT G + VD MN L V LT + ++ + VRG+
Sbjct: 7 LKLLYECENFQLTVELDNGTKATGKLVQVDDLMNLTLDDVVLTEINGHNTRIERMMVRGS 66
Query: 64 NIRYYILPDSLNLETLLVEETPR 86
I+ ILP L L E P+
Sbjct: 67 LIQLIILPPILQYSPFLKLEEPK 89
>gi|209877859|ref|XP_002140371.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209555977|gb|EEA06022.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N ++ +ELKNG G + GVD MN L V T K G+ + +RGNNI+Y
Sbjct: 12 NKHSIMVELKNGETYSGMLIGVDGFMNLVLNNVISTSKDGQRFFRMSECYLRGNNIKYIR 71
Query: 70 LPDSL 74
+ D++
Sbjct: 72 MNDNI 76
>gi|68476979|ref|XP_717467.1| potential RNA processing complex subunit Lsm2 [Candida albicans
SC5314]
gi|68477168|ref|XP_717377.1| potential RNA processing complex subunit Lsm2 [Candida albicans
SC5314]
gi|46439086|gb|EAK98408.1| potential RNA processing complex subunit Lsm2 [Candida albicans
SC5314]
gi|46439180|gb|EAK98501.1| potential RNA processing complex subunit Lsm2 [Candida albicans
SC5314]
Length = 103
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 4/89 (4%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV--NLDHL 58
M F L ++ V++ELKN + GT+ VD +N L + T + P + +L
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQFLNLKLDNITCTNGQRYPYLGAVKNL 60
Query: 59 SVRGNNIRY-YILPDSLNLETLLVEETPR 86
+RG+N+RY ++ P+S++ TLL + + R
Sbjct: 61 FIRGSNVRYVHMNPNSVDC-TLLQDASRR 88
>gi|298714042|emb|CBJ27274.1| Small nuclear ribonucleoprotein-associated protein D3 [Ectocarpus
siliculosus]
Length = 113
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 39/71 (54%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E+KNG I G + + +MN + V +T + L+ + +RG+
Sbjct: 8 IKLLHEGEGHGVTVEMKNGEIYRGHLNEAEDTMNCFMTGVTMTGRDGRVSKLEQVYLRGS 67
Query: 64 NIRYYILPDSL 74
+I+ +LPD L
Sbjct: 68 HIKLVVLPDVL 78
>gi|301093933|ref|XP_002997811.1| U6 snRNA-associated Sm-like protein LSm2, putative [Phytophthora
infestans T30-4]
gi|262109897|gb|EEY67949.1| U6 snRNA-associated Sm-like protein LSm2, putative [Phytophthora
infestans T30-4]
Length = 95
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGN 63
F L + V++ELKN + G + VD +N L V + K P +N+ + +RG+
Sbjct: 5 FFKTLVGKEVAVELKNDVALMGVLDSVDQYLNIKLLNVSVVEGDKFPQLMNMKNCFIRGS 64
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
+IRY +P ++T L+++ R ++ TA +
Sbjct: 65 SIRYVQIPAG-EVDTELLQDAAR---REATANK 93
>gi|18379085|ref|NP_563682.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
gi|297848550|ref|XP_002892156.1| hypothetical protein ARALYDRAFT_470311 [Arabidopsis lyrata subsp.
lyrata]
gi|98961007|gb|ABF58987.1| At1g03330 [Arabidopsis thaliana]
gi|297337998|gb|EFH68415.1| hypothetical protein ARALYDRAFT_470311 [Arabidopsis lyrata subsp.
lyrata]
gi|332189439|gb|AEE27560.1| small nuclear ribonucleoprotein-like protein [Arabidopsis
thaliana]
Length = 93
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 3/82 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M + L + V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MLFFSYFKDLVGQEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNC 60
Query: 59 SVRGNNIRYYILP-DSLNLETL 79
+RG+ +RY LP D ++++ L
Sbjct: 61 FIRGSVVRYVQLPKDGVDVDLL 82
>gi|383863071|ref|XP_003707006.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Megachile
rotundata]
Length = 112
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 18 MLFYSFFKSLIGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 77
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 78 FIRGSVVRYVQLPGD-EVDTQLLQDAAR 104
>gi|290999355|ref|XP_002682245.1| predicted protein [Naegleria gruberi]
gi|284095872|gb|EFC49501.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
F L ++ V +ELKN + GT+ VD +N L V++ K K P + + +
Sbjct: 4 FFSFFKTLVDKEVIVELKNDVSLRGTLHSVDQYLNVKLNNVQVEDKEKYPYLCCIKNCFI 63
Query: 61 RGNNIRYYILP 71
RG+ +RY LP
Sbjct: 64 RGSTVRYIQLP 74
>gi|407920870|gb|EKG14049.1| Protein-tyrosine phosphatase receptor/non-receptor type
[Macrophomina phaseolina MS6]
Length = 1134
Score = 39.7 bits (91), Expect = 0.23, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + G L + +RGNNI+Y +PD +
Sbjct: 3 VELKNGETLNGHLVNCDNWMNLTLKEVVQTSPDGDRFWRLPEVYIRGNNIKYLRVPDEI 61
>gi|336470904|gb|EGO59065.1| hypothetical protein NEUTE1DRAFT_116371 [Neurospora tetrasperma
FGSC 2508]
gi|350291974|gb|EGZ73169.1| Sm-like ribonucleoprotein [Neurospora tetrasperma FGSC 2509]
Length = 130
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN L+ V+ + +G V L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLIQCDTWMNLTLREVVQTSPEGDKFVRLREVYVKGNNIKYLRVPDDV 75
>gi|322708983|gb|EFZ00560.1| small nuclear ribonucleoprotein LSM2 [Metarhizium anisopliae ARSEF
23]
Length = 108
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS------ 59
F L + V++ELKN + GT+ VD +N L + + + K P HLS
Sbjct: 16 FFKTLIDHEVTVELKNDIQLKGTLKSVDQYLNIKLDDISVVEELKYP----HLSSVKNVF 71
Query: 60 VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+RG+ +RY LP +++T L+E+ R + A
Sbjct: 72 IRGSVVRYVHLPAG-SVDTQLLEDATRREAAAQQA 105
>gi|156395605|ref|XP_001637201.1| predicted protein [Nematostella vectensis]
gi|156224311|gb|EDO45138.1| predicted protein [Nematostella vectensis]
Length = 137
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N + +ELKNG +G + D MN +L+ V T + G + VRG+NI+Y
Sbjct: 12 QNHPMLVELKNGETYNGHLVSCDTWMNINLREVICTSRDGDKFWKIPECYVRGSNIKYLR 71
Query: 70 LPDSL 74
+PD +
Sbjct: 72 IPDEV 76
>gi|320169233|gb|EFW46132.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 162
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
LV L L+ + VSIEL + G + VD+ MN L V L L H + +
Sbjct: 12 LVCLLQALHGQRVSIELHRDMLATGDVDEVDVHMNVLLYNVVLE-------RLGHGAEQA 64
Query: 63 NNIRYYILPDSLN 75
+IRY LPD +
Sbjct: 65 KHIRYVHLPDEFD 77
>gi|310795553|gb|EFQ31014.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 128
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G V + + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVMCDTWMNLTLKEVVQTSPEGDKFVKIPEVYVKGNNIKYLRVPDDI 75
>gi|11138539|gb|AAG31434.1|AF204157_1 snRNP core protein SMX5d [Mus musculus]
Length = 119
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 3/86 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +
Sbjct: 27 FYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFI 86
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ +RY LP ++T L+++ R
Sbjct: 87 RGSVVRYVQLPAD-EVDTQLLQDAAR 111
>gi|344303994|gb|EGW34243.1| snRNA-associated protein, Sm class [Spathaspora passalidarum NRRL
Y-27907]
Length = 100
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L ++ V++ELKN + GT+ VD +N L + T K P ++ L
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDMEIKGTLKSVDQYLNLKLDNISCTNGNKYPHLQSVKTL 60
Query: 59 SVRGNNIRY-YILPDSLNLETLLVEETPR 86
+RG+ +RY ++ P+S++ TLL + + R
Sbjct: 61 FIRGSTVRYVHMSPNSVDC-TLLQDASRR 88
>gi|270007999|gb|EFA04447.1| hypothetical protein TcasGA2_TC014750 [Tribolium castaneum]
Length = 130
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 50/110 (45%), Gaps = 8/110 (7%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L N + +ELKNG +G + D MN +L+ V T + G + +RG+
Sbjct: 18 LLRTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGST 77
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
I+Y +PD + +V+E VK + GR + GRG R R R
Sbjct: 78 IKYLRIPDEV---IDMVKEEAVVKNR----GRDMKGGRGGQNQRNRPAAR 120
>gi|449436291|ref|XP_004135926.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
1 [Cucumis sativus]
gi|449436293|ref|XP_004135927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
2 [Cucumis sativus]
gi|449436295|ref|XP_004135928.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
3 [Cucumis sativus]
gi|449489026|ref|XP_004158193.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
1 [Cucumis sativus]
gi|449489028|ref|XP_004158194.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
2 [Cucumis sativus]
gi|449489032|ref|XP_004158195.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like isoform
3 [Cucumis sativus]
Length = 93
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M + L V++ELKN + GT+ VD +N L+ ++ + K P +++ +
Sbjct: 1 MLFFSYFKDLVGREVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQEKYPHMLSVRNC 60
Query: 59 SVRGNNIRYYIL-PDSLNLETL 79
+RG+ +RY L PD +++E L
Sbjct: 61 FIRGSVVRYVQLPPDGVDVELL 82
>gi|223974607|gb|ACN31491.1| unknown [Zea mays]
Length = 146
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSL 74
+E KNG +G + D MN HL+ V T K G + +RGN I+Y +PD +
Sbjct: 17 VEPKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTIKYLRVPDEV 75
>gi|145533499|ref|XP_001452494.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420193|emb|CAK85097.1| unnamed protein product [Paramecium tetraurelia]
Length = 100
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGNNIRYYILP 71
+V+IELKNG + G IT VD ++N +L +++ K P + L + +RG+ ++Y +P
Sbjct: 19 SVTIELKNGLQIQGQITYVDDNLNFNLVDPEVSDPVKQPQLITLKNSFIRGSTVKYVHIP 78
Query: 72 -DSLNLETLLVEETPRVKPKK 91
+ L E L+ VK +K
Sbjct: 79 QEELQEEVLISACKNEVKKQK 99
>gi|281201359|gb|EFA75571.1| putative small nuclear ribonucleoparticle-associated protein
[Polysphondylium pallidum PN500]
Length = 150
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 12/97 (12%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVN-LDHLSVRGNNIRYYILPDS 73
++++L+N ++GTI +D MN L TLK ++ + D + + NIRY +PD
Sbjct: 25 ITVQLRNENEIYGTIDTIDEHMNIELSNA--TLKRRDTTDSYDLILINSRNIRYIQIPDR 82
Query: 74 LNLETLLVEETPRVKP---------KKPTAGRPVGRG 101
++L +LL + + +KP + RG
Sbjct: 83 IDLNSLLFLYSKTLSEMKNKYQRTRRKPVVQSTIDRG 119
>gi|218200492|gb|EEC82919.1| hypothetical protein OsI_27848 [Oryza sativa Indica Group]
Length = 120
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
+ +L + V++ELKN + GT+ VD +N L+ ++ + K P +++ + +
Sbjct: 30 FFSYFKELVGKEVTVELKNDLAIRGTLHSVDQYLNIKLENTRVVDQDKYPHMLSVRNCFI 89
Query: 61 RGNNIRYYILP-DSLNLETL 79
RG+ +RY +LP D ++++ L
Sbjct: 90 RGSVVRYVLLPQDGVDIDIL 109
>gi|61097894|ref|NP_571571.1| U6 snRNA-associated Sm-like protein LSm2 [Danio rerio]
gi|55715812|gb|AAH85441.1| Smx5 [Danio rerio]
gi|156229994|gb|AAI52151.1| Smx5 [Danio rerio]
gi|182891394|gb|AAI64435.1| Smx5 protein [Danio rerio]
Length = 95
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
>gi|298715431|emb|CBJ28042.1| Sm-like protein LSm4 [Ectocarpus siliculosus]
Length = 165
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP-VNLDHLSVRGNNIRYYILPDSL 74
+ELKNG +G + D MN LK V T + + V + + VRGN+I+Y +P+ +
Sbjct: 17 VELKNGDTYNGRLDNCDSWMNIKLKDVIFTSRDADKFVKMVEVYVRGNSIKYVTIPEEV 75
>gi|209731578|gb|ACI66658.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|91084013|ref|XP_975325.1| PREDICTED: similar to LSM4 homolog, U6 small nuclear RNA associated
[Tribolium castaneum]
Length = 163
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)
Query: 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYI 69
N + +ELKNG +G + D MN +L+ V T + G + +RG+ I+Y
Sbjct: 23 QNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSRDGDKFWRMPECYIRGSTIKYLR 82
Query: 70 LPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGRGRGRGRGRGR 114
+PD + +V+E VK + GR + GRG R R R
Sbjct: 83 IPDEV---IDMVKEEAVVKNR----GRDMKGGRGGQNQRNRPAAR 120
>gi|12834762|dbj|BAB23033.1| unnamed protein product [Mus musculus]
Length = 138
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLT-LKGKNPVNLDHLSVRG 62
+ L N + +ELKNG +G + D MN +L+ V T L G + +RG
Sbjct: 4 LSLLKTAQNHPMLVELKNGETYNGHLVSCDNWMNINLREVICTSLDGDKFWRMPECYIRG 63
Query: 63 NNIRYYILPDSL 74
+ I+Y +PD +
Sbjct: 64 STIKYLRIPDEI 75
>gi|62858431|ref|NP_001016402.1| LSM2 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|163838653|ref|NP_001106211.1| LSM2 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|60618387|gb|AAH90606.1| LSM2 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|62871721|gb|AAH94397.1| Lsm2 protein [Xenopus laevis]
gi|89273744|emb|CAJ81423.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Xenopus (Silurana) tropicalis]
gi|226372864|gb|ACO52057.1| U6 snRNA-associated Sm-like protein LSm2 [Rana catesbeiana]
Length = 95
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
>gi|50545437|ref|XP_500256.1| YALI0A19756p [Yarrowia lipolytica]
gi|49646121|emb|CAG84194.1| YALI0A19756p [Yarrowia lipolytica CLIB122]
Length = 131
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVK-LTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELK+G + G + D MN LK V+ + G+N + VRG+NI+ LPD L
Sbjct: 19 VELKSGESLRGHLLKCDHWMNLTLKEVEEFSASGENTATVSEYYVRGSNIKALQLPDEL 77
>gi|412990430|emb|CCO19748.1| Small nuclear ribonucleoprotein Sm D3 [Bathycoccus prasinos]
Length = 131
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNL 76
+ELK+G + GT+ + + N L V T + +L++ +RG+ IR I+PD L
Sbjct: 51 VELKSGELYRGTLVEAEDNWNCQLTNVSHTARDGKHSSLENCYLRGSKIRMVIVPDMLKN 110
Query: 77 ETLLVEETPRVK 88
+ + PR K
Sbjct: 111 APMFKKIDPRTK 122
>gi|10863977|ref|NP_067000.1| U6 snRNA-associated Sm-like protein LSm2 [Homo sapiens]
gi|155372081|ref|NP_001094647.1| U6 snRNA-associated Sm-like protein LSm2 [Bos taurus]
gi|158533995|ref|NP_001103571.1| U6 snRNA-associated Sm-like protein LSm2 isoform 2 [Mus musculus]
gi|178056596|ref|NP_001116608.1| U6 snRNA-associated Sm-like protein LSm2 [Sus scrofa]
gi|226443174|ref|NP_001140070.1| U6 snRNA-associated Sm-like protein LSm2 [Salmo salar]
gi|260064052|ref|NP_001159394.1| LSM2 homolog, U6 small nuclear RNA associated isoform 2 [Rattus
norvegicus]
gi|386781369|ref|NP_001247614.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|73972304|ref|XP_532081.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Canis lupus
familiaris]
gi|291395796|ref|XP_002714328.1| PREDICTED: LSM2 homolog, U6 small nuclear RNA associated
[Oryctolagus cuniculus]
gi|296197733|ref|XP_002746407.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Callithrix
jacchus]
gi|297677734|ref|XP_002816713.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Pongo
abelii]
gi|327286769|ref|XP_003228102.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like [Anolis
carolinensis]
gi|332246070|ref|XP_003272173.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Nomascus
leucogenys]
gi|332823648|ref|XP_518362.3| PREDICTED: uncharacterized protein LOC462569 [Pan troglodytes]
gi|348576468|ref|XP_003474009.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Cavia
porcellus]
gi|395832028|ref|XP_003789080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Otolemur
garnettii]
gi|397523138|ref|XP_003831598.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Pan
paniscus]
gi|402866510|ref|XP_003897424.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Papio
anubis]
gi|403307821|ref|XP_003944381.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Saimiri
boliviensis boliviensis]
gi|426250528|ref|XP_004018987.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2 [Ovis aries]
gi|10720079|sp|Q9Y333.1|LSM2_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm2; AltName:
Full=Protein G7b; AltName: Full=Small nuclear
ribonuclear protein D homolog; AltName: Full=snRNP core
Sm-like protein Sm-x5
gi|52783102|sp|O35900.1|LSM2_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm2; AltName:
Full=Protein G7b; AltName: Full=snRNP core Sm-like
protein Sm-x5
gi|5919145|gb|AAD56226.1|AF182288_1 U6 snRNA-associated Sm-like protein LSm2 [Homo sapiens]
gi|12239339|gb|AAG49438.1|AF136977_1 snRNP core SM-like protein SM-x5 [Homo sapiens]
gi|16118494|gb|AAL14450.1|AF397035_3 small ribonuclear protein G7b [Mus musculus]
gi|16118503|gb|AAL14458.1|AF397036_3 small ribonuclear protein G7b [Mus musculus]
gi|2463648|gb|AAB72037.1| snRNP core Sm protein homolog Sm-X5 [Mus musculus]
gi|4529895|gb|AAD21818.1| snRNP [Homo sapiens]
gi|5701852|emb|CAB52190.1| G7b protein [Homo sapiens]
gi|11225487|gb|AAG33023.1| SMX5-like protein [Homo sapiens]
gi|14327936|gb|AAH09192.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|15277249|dbj|BAB63302.1| small nuclear ribonuclear protein D homolog [Homo sapiens]
gi|15679962|gb|AAH14288.1| Lsm2 protein [Mus musculus]
gi|49457288|emb|CAG46943.1| LSM2 [Homo sapiens]
gi|49457310|emb|CAG46954.1| LSM2 [Homo sapiens]
gi|74195973|dbj|BAE30544.1| unnamed protein product [Mus musculus]
gi|119623930|gb|EAX03525.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|123988106|gb|ABM83829.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|124000059|gb|ABM87538.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|147225158|emb|CAN13335.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Sus scrofa]
gi|148694757|gb|EDL26704.1| LSM2 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Mus musculus]
gi|149028025|gb|EDL83476.1| rCG38360, isoform CRA_b [Rattus norvegicus]
gi|151557081|gb|AAI50006.1| LSM2 protein [Bos taurus]
gi|208968015|dbj|BAG73846.1| U6 snRNA-associated Sm-like protein LSm2 [synthetic construct]
gi|221221672|gb|ACM09497.1| U6 snRNA-associated Sm-like protein LSm2 [Salmo salar]
gi|296474271|tpg|DAA16386.1| TPA: LSM2 homolog, U6 small nuclear RNA associated [Bos taurus]
gi|355561546|gb|EHH18178.1| hypothetical protein EGK_14728 [Macaca mulatta]
gi|355762482|gb|EHH61980.1| hypothetical protein EGM_20136 [Macaca fascicularis]
gi|380785271|gb|AFE64511.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|383411271|gb|AFH28849.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|384943564|gb|AFI35387.1| U6 snRNA-associated Sm-like protein LSm2 [Macaca mulatta]
gi|387019545|gb|AFJ51890.1| U6 snRNA-associated Sm-like protein LSm2 [Crotalus adamanteus]
gi|410206872|gb|JAA00655.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410253898|gb|JAA14916.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410290348|gb|JAA23774.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410329143|gb|JAA33518.1| LSM2 homolog, U6 small nuclear RNA associated [Pan troglodytes]
Length = 95
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
>gi|358365662|dbj|GAA82284.1| U6 snRNA-associated Sm-like protein LSM4 [Aspergillus kawachii
IFO 4308]
Length = 121
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLASCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEEI 75
>gi|327304028|ref|XP_003236706.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326462048|gb|EGD87501.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 121
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEEV 75
>gi|318103625|ref|NP_001188170.1| u6 snRNA-associated sm-like protein lsm2 [Ictalurus punctatus]
gi|432855577|ref|XP_004068255.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like [Oryzias
latipes]
gi|308323693|gb|ADO28982.1| u6 snRNA-associated sm-like protein lsm2 [Ictalurus punctatus]
Length = 95
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
>gi|308482400|ref|XP_003103403.1| CRE-SNR-1 protein [Caenorhabditis remanei]
gi|308259824|gb|EFP03777.1| CRE-SNR-1 protein [Caenorhabditis remanei]
Length = 152
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 9/119 (7%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V++E G + G + + +MN L +T + L+++ +RGN
Sbjct: 8 IKILHEAEGHVVTLETVTGEVYRGKLIEAEDNMNCQLSETIVTFRDGRSHQLENVFIRGN 67
Query: 64 NIR-----YYILPDSLNLETLLVEETPRVKPKKPTAGR----PVGRGRGRGRGRGRGRG 113
+R Y LP + +++ + + P GR +G G G RGRGRG
Sbjct: 68 KVRFKALLYLELPYIFQIRFMILPDMLKNAPMFKNIGRAQKGAIGMGLGGIDPRGRGRG 126
>gi|367022520|ref|XP_003660545.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
gi|347007812|gb|AEO55300.1| hypothetical protein MYCTH_2298987 [Myceliophthora thermophila
ATCC 42464]
Length = 128
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN L+ V+ + +G + L + V+GNNI+Y +PD +
Sbjct: 17 VELKNGETLNGHLVQCDTWMNLTLREVVQTSPEGDKFMRLPEVYVKGNNIKYLRVPDEI 75
>gi|452845143|gb|EME47076.1| hypothetical protein DOTSEDRAFT_124881, partial [Dothistroma
septosporum NZE10]
Length = 126
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELK G ++G + D MN LK V+ + G L VRGNNI+Y +PD +
Sbjct: 17 VELKTGETLNGHLVACDTYMNITLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEV 75
>gi|398390838|ref|XP_003848879.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
gi|339468755|gb|EGP83855.1| hypothetical protein MYCGRDRAFT_96235 [Zymoseptoria tritici
IPO323]
Length = 129
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELK G ++G + D MN LK V+ + G L VRGNNI+Y +PD +
Sbjct: 17 VELKTGETLNGHLVSCDTYMNIMLKEVVQTSPDGDKFFRLPECYVRGNNIKYLRVPDEV 75
>gi|260947028|ref|XP_002617811.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238847683|gb|EEQ37147.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 106
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK--NPVNLDHLSVR 61
VR L + VS+EL G G + + +MN L V +T KG+ ++ + VR
Sbjct: 7 VRLLNEAQGHIVSLELTTGDTYRGKLIENEDNMNLSLYDVTIT-KGRTGETSYMNQVFVR 65
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGR 102
G+ IR+ +PD L + + P KPK P G P R +
Sbjct: 66 GSMIRFVSVPDILRNAPMFFMK-PGEKPKPPVRGPPSKRSK 105
>gi|402079351|gb|EJT74616.1| glycine rich protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 141
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72
+ +ELKNG ++G + D MN +K V+ + +G + L + V+GNNI+Y +PD
Sbjct: 14 AMMVELKNGETLNGHLVMCDTWMNLTMKEVVQTSPEGDKFMRLPEIYVKGNNIKYLRVPD 73
Query: 73 SL 74
+
Sbjct: 74 EV 75
>gi|255721349|ref|XP_002545609.1| hypothetical protein CTRG_00390 [Candida tropicalis MYA-3404]
gi|240136098|gb|EER35651.1| hypothetical protein CTRG_00390 [Candida tropicalis MYA-3404]
Length = 96
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 6/90 (6%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLD---H 57
M F L ++ V++ELKN + GT+ VD +N L + T + P LD +
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDMEIKGTLKSVDQFLNLKLDNITCTNSEQYPY-LDAVKN 59
Query: 58 LSVRGNNIRY-YILPDSLNLETLLVEETPR 86
L +RG+ +RY ++ P+S++ TLL + + R
Sbjct: 60 LFIRGSTVRYVHMNPNSVDC-TLLQDASRR 88
>gi|315051216|ref|XP_003174982.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
gi|311340297|gb|EFQ99499.1| hypothetical protein MGYG_02512 [Arthroderma gypseum CBS 118893]
Length = 124
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI+Y +P+
Sbjct: 20 VELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEE-- 77
Query: 76 LETLLVEETPRVKPKKPTAGRPVGRGR 102
V + R + + +GR G R
Sbjct: 78 -----VVDLARDQQQNQQSGRSRGGDR 99
>gi|21358381|ref|NP_648570.1| CG10418 [Drosophila melanogaster]
gi|195327103|ref|XP_002030261.1| GM25341 [Drosophila sechellia]
gi|195376259|ref|XP_002046914.1| GJ13149 [Drosophila virilis]
gi|195493810|ref|XP_002094573.1| GE21899 [Drosophila yakuba]
gi|195589798|ref|XP_002084636.1| GD14374 [Drosophila simulans]
gi|7294589|gb|AAF49929.1| CG10418 [Drosophila melanogaster]
gi|194119204|gb|EDW41247.1| GM25341 [Drosophila sechellia]
gi|194154072|gb|EDW69256.1| GJ13149 [Drosophila virilis]
gi|194180674|gb|EDW94285.1| GE21899 [Drosophila yakuba]
gi|194196645|gb|EDX10221.1| GD14374 [Drosophila simulans]
gi|220951570|gb|ACL88328.1| CG10418-PA [synthetic construct]
Length = 95
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPGD-EVDTQLLQDAAR 87
>gi|326470583|gb|EGD94592.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326484638|gb|EGE08648.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 121
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLVNCDNWMNLTLKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRVPEEV 75
>gi|41054297|ref|NP_956054.1| small nuclear ribonucleoprotein D3 polypeptide, like [Danio
rerio]
gi|28278495|gb|AAH45929.1| Small nuclear ribonucleoprotein D3 polypeptide, like [Danio
rerio]
gi|182889668|gb|AAI65492.1| Snrpd3l protein [Danio rerio]
Length = 128
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVSQLEQVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|125978707|ref|XP_001353386.1| GA10305 [Drosophila pseudoobscura pseudoobscura]
gi|195160603|ref|XP_002021164.1| GL25187 [Drosophila persimilis]
gi|54642144|gb|EAL30893.1| GA10305 [Drosophila pseudoobscura pseudoobscura]
gi|194118277|gb|EDW40320.1| GL25187 [Drosophila persimilis]
Length = 95
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKEVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPDKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPGE-EVDTQLLQDAAR 87
>gi|209732980|gb|ACI67359.1| Small nuclear ribonucleoprotein Sm D3 [Salmo salar]
Length = 127
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|452986281|gb|EME86037.1| hypothetical protein MYCFIDRAFT_130274, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 126
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELK G ++G + D MN LK V+ + +G L VRGNNI+Y +PD +
Sbjct: 17 VELKTGETLNGHLVSCDTYMNLTLKEVVQTSPEGDKFFRLAECYVRGNNIKYLRVPDEV 75
>gi|350634474|gb|EHA22836.1| hypothetical protein ASPNIDRAFT_127789 [Aspergillus niger ATCC
1015]
Length = 118
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEEI 75
>gi|348672729|gb|EGZ12549.1| hypothetical protein PHYSODRAFT_317573 [Phytophthora sojae]
Length = 99
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGN 63
F L + V++ELKN + G + VD +N L V + K P +N+ + +RG+
Sbjct: 9 FFKTLVGKEVAVELKNDVALMGVLDSVDQYLNIKLLNVSVVEGDKFPQLMNMKNCFIRGS 68
Query: 64 NIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
+IRY +P ++T L+++ R ++ TA +
Sbjct: 69 SIRYVQIPAG-EVDTELLQDAAR---REATANK 97
>gi|328876176|gb|EGG24539.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 162
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPV-NLDHLSVRGNNIRYYILPDS 73
+ +ELKNG +G + D MN +++TV T K + L +RGN I+Y +PD
Sbjct: 15 IMVELKNGETYNGILVNCDNWMNINMRTVIRTSKDSDKFWKLQGCYIRGNTIKYITVPDE 74
Query: 74 L 74
+
Sbjct: 75 I 75
>gi|340374852|ref|XP_003385951.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm2-like
[Amphimedon queenslandica]
Length = 112
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
F L + V +ELKN +HGT+ VD +N L + + K P +++ + +
Sbjct: 4 FYSFFKSLVGKEVIVELKNDLSIHGTLHSVDQYLNIKLTDISIPDPDKYPHMLSVKNCFI 63
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ IRY LP + ++T L+++ R
Sbjct: 64 RGSVIRYVQLP-AEEVDTGLLQDATR 88
>gi|241742042|ref|XP_002414155.1| conserved hypothetical protein [Ixodes scapularis]
gi|215508009|gb|EEC17463.1| conserved hypothetical protein [Ixodes scapularis]
gi|442754033|gb|JAA69176.1| Putative snrnp core protein [Ixodes ricinus]
Length = 96
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T K P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDINVTDTEKYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPAD-EVDTQLLQDAAR 87
>gi|115774627|ref|XP_792582.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm2-like
[Strongylocentrotus purpuratus]
Length = 95
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T + + P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVIVELKNDLSIGGTLHSVDQFLNIKLTDISVTDQERYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 94
+RG+ +RY LP +T L+++ R + + A
Sbjct: 61 FIRGSVVRYVQLPAD-ECDTQLLQDAARKEATQSKA 95
>gi|162606428|ref|XP_001713244.1| putative small nuclear ribonucleoprotein Sm D3 [Guillardia theta]
gi|12580710|emb|CAC27028.1| putative small nuclear ribonucleoprotein Sm D3 [Guillardia theta]
Length = 79
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 14 TVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
++IE KNG I G + ++ +MN LK +K K L + +RG+NI +I+PD
Sbjct: 17 VITIECKNGFIYRGKLIHIEENMNCILKEA-FVIKKKKVQKLTLVFLRGSNISMFIIPDI 75
Query: 74 L 74
L
Sbjct: 76 L 76
>gi|225706764|gb|ACO09228.1| Small nuclear ribonucleoprotein Sm D3 [Osmerus mordax]
gi|225707146|gb|ACO09419.1| Small nuclear ribonucleoprotein Sm D3 [Osmerus mordax]
Length = 127
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|195339803|ref|XP_002036506.1| GM11687 [Drosophila sechellia]
gi|194130386|gb|EDW52429.1| GM11687 [Drosophila sechellia]
Length = 140
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN +L+ V T K G + +RG+ I+Y +PD +
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDEV- 61
Query: 76 LETLLVEETPRVKPKKPT 93
+V+E + K + T
Sbjct: 62 --IDMVKEDAQAKSRNRT 77
>gi|121715750|ref|XP_001275484.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
gi|119403641|gb|EAW14058.1| small nuclear ribonucleoprotein [Aspergillus clavatus NRRL 1]
Length = 119
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L + +RGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLANCDNWMNLILKEVVQASPEGDRFFRLPEVYIRGNNIKYLRIPEEI 75
>gi|225716266|gb|ACO13979.1| Small nuclear ribonucleoprotein Sm D3 [Esox lucius]
Length = 127
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%)
Query: 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGN 63
++ L + V+ E G + G + + +MN + + +T + L+ + +RG+
Sbjct: 7 IKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMANITVTHRDGRVAQLEQVYIRGS 66
Query: 64 NIRYYILPDSL 74
IR+ ILPD L
Sbjct: 67 KIRFLILPDML 77
>gi|45198700|ref|NP_985729.1| AFR182Cp [Ashbya gossypii ATCC 10895]
gi|44984710|gb|AAS53553.1| AFR182Cp [Ashbya gossypii ATCC 10895]
gi|374108960|gb|AEY97866.1| FAFR182Cp [Ashbya gossypii FDAG1]
Length = 95
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 11/92 (11%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L ++ V++ELKN + GT+ VD +N L + + K P HLS
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIELKGTLKSVDQFLNLKLDNISCNNEAKYP----HLSS 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY L + ++T L+++ R
Sbjct: 57 VRNIFIRGSTVRYVYLKKGM-VDTNLLQDAAR 87
>gi|431921560|gb|ELK18914.1| U6 snRNA-associated Sm-like protein LSm2 [Pteropus alecto]
Length = 127
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSV 60
F L + V +ELKN + GT+ VD +N L + +T K P +++ + +
Sbjct: 35 FYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFI 94
Query: 61 RGNNIRYYILPDSLNLETLLVEETPR 86
RG+ +RY LP + ++T L+++ R
Sbjct: 95 RGSVVRYVQLP-ADEVDTQLLQDAAR 119
>gi|145340671|ref|XP_001415444.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144575667|gb|ABO93736.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 130
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHLSVRGN 63
+ L + V++ELKN + GT+ VD +N L+ ++T + + P ++ + +RG+
Sbjct: 43 YFKTLVGKPVTVELKNDLAIAGTLVSVDQYLNIKLENTRVTDEARYPHMRSVRNCFIRGS 102
Query: 64 NIRYYILPDS 73
+RY LP++
Sbjct: 103 VVRYVQLPEA 112
>gi|347837957|emb|CCD52529.1| hypothetical protein [Botryotinia fuckeliana]
Length = 122
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELK+G ++G + D MN LK V+ + G L + V+GNNI+Y +PD +
Sbjct: 18 VELKDGETLNGHLVSCDTWMNLTLKEVVQTSPDGDKFTRLPEIYVKGNNIKYLRMPDEI 76
>gi|452819748|gb|EME26801.1| U6 snRNA-associated Sm-like protein LSm4 isoform 1 [Galdieria
sulphuraria]
Length = 110
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 6 FLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNN 64
L + V +ELK+G +G + +D MN +L+ V T + G + + VRGN
Sbjct: 7 LLKAAQGQPVLVELKSGDTYNGHLVNIDSWMNLNLREVVWTSREGDRFWKIAEIYVRGNT 66
Query: 65 IRYYILPDSLNLETLLVEETPRVKPKK--PTAGRPVGRGRGR 104
++Y +P+ + ++TL +++ P RP RG+ R
Sbjct: 67 VKYLRVPEEI-VDTLTDQQSQTTDKSSSFPKNRRPGSRGKRR 107
>gi|145232181|ref|XP_001399544.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus niger CBS
513.88]
gi|134056455|emb|CAL00622.1| unnamed protein product [Aspergillus niger]
Length = 121
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L + VRGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFRLPEVYVRGNNIKYLRIPEEI 75
>gi|448084158|ref|XP_004195535.1| Piso0_004929 [Millerozyma farinosa CBS 7064]
gi|359376957|emb|CCE85340.1| Piso0_004929 [Millerozyma farinosa CBS 7064]
Length = 120
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 12/110 (10%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLS- 59
M F L ++ V++ELKN + GT+ VD +N L + G N HLS
Sbjct: 1 MLFFSFFKTLVDQEVTVELKNDIEIKGTLKSVDQYLNLKLDNI----SGINETKYPHLSA 56
Query: 60 -----VRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPVGRGRGR 104
+RG+ +R Y+ D +++ L+++ R + K P+ + R R R
Sbjct: 57 IKNLFIRGSTVR-YVHMDPRSVDCTLLQDASR-RGKFPSFSFHLLRFRIR 104
>gi|378734306|gb|EHY60765.1| hypothetical protein HMPREF1120_08709 [Exophiala dermatitidis
NIH/UT8656]
Length = 135
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L VRGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLVNCDTWMNLTLKEVVQTSPEGDRFWRLPEAYVRGNNIKYLRVPEEI 75
>gi|367005821|ref|XP_003687642.1| hypothetical protein TPHA_0K00740 [Tetrapisispora phaffii CBS
4417]
gi|357525947|emb|CCE65208.1| hypothetical protein TPHA_0K00740 [Tetrapisispora phaffii CBS
4417]
Length = 197
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 9/70 (12%)
Query: 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--------VNLDHLSVRGNN 64
+ + IELKNGT + GT+T VD MN L V + + P + L+ + +RG +
Sbjct: 13 QQMFIELKNGTTIQGTLTNVDNWMNLTLSNV-VQVDNSEPNEDGKVEKITLEQIYLRGTH 71
Query: 65 IRYYILPDSL 74
I+Y L D +
Sbjct: 72 IKYINLQDDI 81
>gi|134109889|ref|XP_776494.1| hypothetical protein CNBC5480 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259170|gb|EAL21847.1| hypothetical protein CNBC5480 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 95
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M + F L ++ +++ELKN + GT+ VD +N L + + ++P + + +
Sbjct: 1 MLIFSFFKTLTDQVITVELKNDLSITGTLKSVDQFLNIRLDNISVEDPERHPHMMAVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPRVKPKK 91
+RG+ +RY + + +++T L+E+ R + K+
Sbjct: 61 FIRGSVVRYVRMA-ARSVDTTLLEDATRREAKE 92
>gi|195473653|ref|XP_002089107.1| GE25987 [Drosophila yakuba]
gi|194175208|gb|EDW88819.1| GE25987 [Drosophila yakuba]
Length = 140
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPDSLN 75
+ELKNG +G + D MN +L+ V T K G + +RG+ I+Y +PD +
Sbjct: 3 VELKNGETYNGHLVSCDSWMNINLRDVICTSKDGDRFWRMPECYIRGSTIKYLRIPDEV- 61
Query: 76 LETLLVEETPRVKPKKPT 93
+V+E + K + T
Sbjct: 62 --IDMVKEDAQAKSRNRT 77
>gi|126133080|ref|XP_001383065.1| hypothetical protein PICST_54497 [Scheffersomyces stipitis CBS
6054]
gi|126094890|gb|ABN65036.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 147
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 15 VSIELKNGTIVHGTITGVDISMNTHLKTV-KLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73
+ IELKNG ++G + D MN LK V + + G+ + + + +RGN+I+Y LP+
Sbjct: 15 ILIELKNGETLNGGLVNCDSWMNLTLKDVIQTSSNGETFLKIPEVYIRGNHIKYLRLPEE 74
Query: 74 L 74
+
Sbjct: 75 I 75
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 17 IELKNGTIVHGTITGVDISMNTHLK-TVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74
+ELKNG ++G + D MN LK V+ + +G L + +RGNNI+Y +P+ +
Sbjct: 17 VELKNGETLNGHLANCDNWMNLILKEVVQTSPEGDRFFKLPEVYIRGNNIKYLRIPEEI 75
>gi|393907050|gb|EFO18420.2| U6 snRNA-associated Sm-like protein LSm2 [Loa loa]
Length = 99
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T + P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDISVTDSERYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR 86
+RG+ +RY LP ++T L+++ R
Sbjct: 61 FIRGSVVRYVQLPAD-QVDTQLLQDASR 87
>gi|384246803|gb|EIE20292.1| hypothetical protein COCSUDRAFT_58002 [Coccomyxa subellipsoidea
C-169]
Length = 144
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVR 61
L F+ L V +EL N +V G + D MN + + +D L V+
Sbjct: 13 SLACFVQALEGLNVVVELHNDAVVRGMLESADEGMNMIINGATYEPLQGSAQAMDFLFVK 72
Query: 62 GNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGR 96
G IRY LP +N T RV+ K+ A
Sbjct: 73 GARIRYVHLPAKMNAAT-------RVEDKQKEAAE 100
>gi|170582506|ref|XP_001896160.1| U6 snRNA-associated Sm-like protein LSm2 [Brugia malayi]
gi|158596693|gb|EDP34995.1| U6 snRNA-associated Sm-like protein LSm2, putative [Brugia
malayi]
Length = 99
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 5/98 (5%)
Query: 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNP--VNLDHL 58
M F L + V +ELKN + GT+ VD +N L + +T + P +++ +
Sbjct: 1 MLFYSFFKSLVGKDVVVELKNDLSICGTLHSVDQYLNMKLTDISVTDSERYPHMLSVKNC 60
Query: 59 SVRGNNIRYYILPDSLNLETLLVEETPR--VKPKKPTA 94
+RG+ +RY LP ++T L+++ R V K TA
Sbjct: 61 FIRGSVVRYVQLPAD-QVDTQLLQDASRKEVMQAKRTA 97
>gi|405955862|gb|EKC22801.1| U7 snRNA-associated Sm-like protein LSm10 [Crassostrea gigas]
Length = 148
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 3/103 (2%)
Query: 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRG 62
L+ L + ++EL+N V G I VD MN ++ V N V+G
Sbjct: 14 LISLLKAVEGMVTTVELRNENAVTGLIQNVDPFMNIVMEDVVFKSYRGISHNFSSFFVQG 73
Query: 63 NNIRYYILPDSLNLETLLVEET---PRVKPKKPTAGRPVGRGR 102
NIRY +PD +++ + +E R++ K R R R
Sbjct: 74 MNIRYVHIPDEIDMRAAIDQEVNREWRMRDKMTREIRDAARKR 116
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.318 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,892,721,558
Number of Sequences: 23463169
Number of extensions: 78213777
Number of successful extensions: 548848
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2168
Number of HSP's successfully gapped in prelim test: 984
Number of HSP's that attempted gapping in prelim test: 524485
Number of HSP's gapped (non-prelim): 14795
length of query: 114
length of database: 8,064,228,071
effective HSP length: 81
effective length of query: 33
effective length of database: 6,163,711,382
effective search space: 203402475606
effective search space used: 203402475606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)