Query 033668
Match_columns 114
No_of_seqs 106 out of 1013
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 07:45:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033668.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033668hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b34_A Protein (small nuclear 100.0 4.6E-38 1.6E-42 221.3 10.5 99 1-99 1-99 (119)
2 2y9a_D Small nuclear ribonucle 100.0 3.3E-32 1.1E-36 193.6 8.9 95 1-95 4-98 (126)
3 1d3b_A Protein (small nuclear 99.9 7E-26 2.4E-30 147.5 10.0 72 1-72 4-75 (75)
4 4emh_A Probable U6 snRNA-assoc 99.9 5.1E-25 1.8E-29 152.2 8.5 83 2-84 16-99 (105)
5 1ljo_A Archaeal SM-like protei 99.9 1.2E-23 4.1E-28 136.9 9.2 73 1-73 4-77 (77)
6 1i4k_A Putative snRNP SM-like 99.9 2.7E-23 9.3E-28 134.9 9.4 74 1-74 3-76 (77)
7 1h64_1 SnRNP SM-like protein; 99.9 6.1E-23 2.1E-27 132.8 9.4 72 2-73 4-75 (75)
8 3s6n_F Small nuclear ribonucle 99.9 2E-22 6.7E-27 134.3 9.0 73 2-74 6-78 (86)
9 1th7_A SnRNP-2, small nuclear 99.9 4.8E-22 1.6E-26 130.5 9.6 72 2-73 9-80 (81)
10 1n9r_A SMF, small nuclear ribo 99.9 2.1E-22 7.3E-27 136.1 8.1 72 1-72 20-92 (93)
11 4emk_B U6 snRNA-associated SM- 99.9 3.1E-22 1.1E-26 129.9 7.4 71 2-72 4-74 (75)
12 1i8f_A Putative snRNP SM-like 99.9 1E-21 3.5E-26 129.1 9.1 70 2-72 11-80 (81)
13 3s6n_G Small nuclear ribonucle 99.9 1.1E-21 3.9E-26 127.6 8.0 71 4-74 6-76 (76)
14 1mgq_A SM-like protein; LSM, R 99.9 1.7E-21 6E-26 128.6 9.0 70 1-70 14-83 (83)
15 4emk_A U6 snRNA-associated SM- 99.8 6.3E-21 2.2E-25 129.3 9.9 72 1-72 19-91 (94)
16 1m5q_A SMAP3, small nuclear ri 99.8 1.2E-20 4.2E-25 134.5 7.2 80 3-86 1-80 (130)
17 3bw1_A SMX4 protein, U6 snRNA- 99.8 9.6E-20 3.3E-24 123.4 8.3 72 3-74 11-89 (96)
18 4emg_A Probable U6 snRNA-assoc 99.8 2.9E-19 9.8E-24 120.6 9.4 70 2-71 9-91 (93)
19 1d3b_B Protein (small nuclear 99.8 6.1E-20 2.1E-24 122.5 6.0 70 4-73 6-85 (91)
20 3s6n_E Small nuclear ribonucle 99.8 1.4E-19 4.7E-24 122.2 6.5 72 1-72 15-91 (92)
21 2fwk_A U6 snRNA-associated SM- 99.8 1.9E-19 6.6E-24 126.4 6.8 73 1-73 27-114 (121)
22 3pgw_B SM B; protein-RNA compl 99.8 2.2E-18 7.5E-23 132.8 10.6 70 5-74 7-86 (231)
23 4emk_C U6 snRNA-associated SM- 99.8 2E-18 6.9E-23 120.3 8.6 72 3-74 24-102 (113)
24 1b34_B Protein (small nuclear 99.8 1.9E-18 6.5E-23 120.8 8.4 73 2-74 27-115 (118)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.0 1.7E-09 5.8E-14 72.1 7.7 67 5-77 10-77 (86)
26 2vxe_A CG10686-PA; EDC3, CAR-1 97.2 0.0024 8.3E-08 42.4 8.1 65 9-73 10-84 (88)
27 2fb7_A SM-like protein, LSM-14 96.8 0.0026 9.1E-08 42.8 5.9 65 8-72 15-89 (95)
28 1kq1_A HFQ, HOST factor for Q 96.6 0.0083 2.8E-07 38.8 6.9 58 6-75 11-70 (77)
29 1y96_B Gemin7, SIP3, GEM-assoc 96.6 0.009 3.1E-07 39.4 6.9 64 3-71 20-84 (85)
30 2ylb_A Protein HFQ; RNA-bindin 96.6 0.0086 2.9E-07 38.4 6.6 58 6-76 13-72 (74)
31 4a53_A EDC3; RNA binding prote 96.4 0.01 3.5E-07 41.7 6.8 54 7-71 7-62 (125)
32 3ahu_A Protein HFQ; SM-like mo 96.4 0.012 4.1E-07 38.2 6.6 59 6-76 15-75 (78)
33 2vc8_A Enhancer of mRNA-decapp 96.3 0.0089 3E-07 39.3 5.6 60 8-70 5-66 (84)
34 1b34_A Protein (small nuclear 96.0 0.0011 3.8E-08 45.7 0.0 18 96-113 100-117 (119)
35 1u1s_A HFQ protein; SM-like ba 95.8 0.032 1.1E-06 36.5 6.4 53 12-77 19-71 (82)
36 2y90_A Protein HFQ; RNA-bindin 95.6 0.032 1.1E-06 38.0 6.0 52 12-76 21-72 (104)
37 2qtx_A Uncharacterized protein 95.2 0.046 1.6E-06 34.8 5.4 31 11-41 24-54 (71)
38 1ycy_A Conserved hypothetical 94.5 0.26 8.8E-06 31.0 7.4 63 3-70 7-69 (71)
39 3sb2_A Protein HFQ; SM-like, R 94.5 0.12 4.2E-06 33.5 6.1 53 12-77 20-72 (79)
40 3hfn_A ASL2047 protein; HFQ, S 91.9 1 3.5E-05 28.6 7.2 53 6-69 15-69 (72)
41 2rm4_A CG6311-PB, DM EDC3; enh 91.5 1 3.4E-05 30.4 7.2 60 8-71 8-70 (103)
42 3hfo_A SSR3341 protein; HFQ, S 89.4 1.3 4.3E-05 28.0 6.0 47 12-69 21-67 (70)
43 1ib8_A Conserved protein SP14. 79.8 2.1 7E-05 30.6 4.0 31 5-35 97-131 (164)
44 3rux_A BIRA bifunctional prote 75.9 4.1 0.00014 30.9 4.9 34 9-42 221-254 (270)
45 1zq1_A Glutamyl-tRNA(Gln) amid 69.3 4 0.00014 33.5 3.7 42 1-42 1-53 (438)
46 2eay_A Biotin [acetyl-COA-carb 67.7 4.1 0.00014 30.2 3.2 47 9-62 185-232 (233)
47 3by7_A Uncharacterized protein 61.6 32 0.0011 22.8 7.1 56 16-73 7-77 (100)
48 2e12_A SM-like motif, hypothet 58.6 10 0.00034 25.2 3.4 25 6-30 21-46 (101)
49 4hcz_A PHD finger protein 1; p 55.6 19 0.00065 21.8 4.0 25 11-35 6-30 (58)
50 2ej9_A Putative biotin ligase; 54.0 24 0.00082 26.0 5.3 30 10-39 190-219 (237)
51 1sg5_A ORF, hypothetical prote 51.6 7.3 0.00025 25.1 1.8 27 6-32 19-45 (86)
52 2xk0_A Polycomb protein PCL; t 51.0 38 0.0013 21.1 5.0 23 11-33 18-40 (69)
53 2eqj_A Metal-response element- 48.8 27 0.00093 21.6 4.0 25 11-35 16-40 (66)
54 3beg_B Splicing factor, argini 48.5 15 0.00052 23.4 3.1 19 64-82 52-70 (115)
55 1bia_A BIRA bifunctional prote 45.7 36 0.0012 26.0 5.3 48 9-62 270-318 (321)
56 2dxu_A Biotin--[acetyl-COA-car 41.7 20 0.0007 26.4 3.2 44 11-61 188-233 (235)
57 3uby_A DNA-3-methyladenine gly 40.5 39 0.0013 25.3 4.5 33 5-37 18-50 (219)
58 2e5p_A Protein PHF1, PHD finge 38.3 48 0.0017 20.6 4.0 25 11-35 12-36 (68)
59 2d6f_A Glutamyl-tRNA(Gln) amid 37.6 29 0.001 28.3 3.8 39 3-42 7-53 (435)
60 1nh2_D Transcription initiatio 36.6 65 0.0022 22.0 4.8 30 19-48 55-87 (121)
61 2qqr_A JMJC domain-containing 36.5 49 0.0017 22.5 4.2 37 10-46 7-45 (118)
62 2m0o_A PHD finger protein 1; t 36.2 18 0.00062 23.2 1.8 25 11-35 29-53 (79)
63 1ub1_A MECP2, attachment regio 36.2 38 0.0013 23.6 3.6 11 41-51 58-68 (133)
64 1nvp_D Transcription initiatio 33.8 95 0.0033 20.6 5.2 29 19-47 51-82 (108)
65 3ggm_A Uncharacterized protein 32.7 72 0.0024 18.9 4.2 36 36-71 4-39 (81)
66 3rkx_A Biotin-[acetyl-COA-carb 32.7 53 0.0018 25.3 4.4 33 9-42 276-308 (323)
67 3v4h_A Hypothetical protein; s 32.2 96 0.0033 22.2 5.4 58 12-73 100-164 (185)
68 3bfm_A Biotin protein ligase-l 30.3 83 0.0028 22.8 4.9 29 9-42 191-219 (235)
69 2e5q_A PHD finger protein 19; 28.8 52 0.0018 20.1 3.0 25 11-35 10-34 (63)
70 3fb9_A Uncharacterized protein 28.8 98 0.0034 20.1 4.5 31 3-33 16-50 (90)
71 1ky9_A Protease DO, DEGP, HTRA 27.0 83 0.0029 25.1 4.7 31 13-43 111-141 (448)
72 2qs8_A XAA-Pro dipeptidase; am 26.5 70 0.0024 24.1 4.0 39 31-69 2-41 (418)
73 4a8c_A Periplasmic PH-dependen 26.3 90 0.0031 24.7 4.8 31 13-43 88-118 (436)
74 1o9y_A HRCQ2; secretory protei 26.2 1E+02 0.0035 19.0 4.2 35 9-43 46-80 (84)
75 3kl9_A PEPA, glutamyl aminopep 24.8 55 0.0019 25.5 3.2 25 8-32 95-119 (355)
76 3stj_A Protease DEGQ; serine p 22.6 1E+02 0.0036 23.6 4.4 31 13-43 88-118 (345)
77 3uep_A YSCQ-C, type III secret 22.5 1.1E+02 0.0039 19.4 3.9 35 10-44 51-85 (96)
78 3p8d_A Medulloblastoma antigen 21.6 1.5E+02 0.005 18.1 5.3 25 11-35 9-33 (67)
79 3ooq_A Amidohydrolase; structu 20.4 1E+02 0.0036 23.1 4.0 34 36-70 5-38 (396)
No 1
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=100.00 E-value=4.6e-38 Score=221.29 Aligned_cols=99 Identities=72% Similarity=1.051 Sum_probs=78.6
Q ss_pred CchHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCchhhhh
Q 033668 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 80 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~~~~~l 80 (114)
|+|++||++++|++|+|+|+||.+|+|+|.+||+||||+|+||+++..++++.+++.+||||++|+||++||+|+++++|
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~~~~~lg~v~IRG~nI~~I~~pd~l~~d~~l 80 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLL 80 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCTTCCHHHHT
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCCceeEcceEEEcCCeEEEEEeccccccchhH
Confidence 89999999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred hhhCCCCCCCCCCCCCCCC
Q 033668 81 VEETPRVKPKKPTAGRPVG 99 (114)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~ 99 (114)
++++++.++++++..+++|
T Consensus 81 ~~~~pK~k~~~rg~~~~~~ 99 (119)
T 1b34_A 81 VDVEPKVKSKKREAVAGRG 99 (119)
T ss_dssp C------------------
T ss_pred hhhccccccccccCCCCCC
Confidence 9999998877554433333
No 2
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.97 E-value=3.3e-32 Score=193.59 Aligned_cols=95 Identities=21% Similarity=0.398 Sum_probs=84.2
Q ss_pred CchHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCchhhhh
Q 033668 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLL 80 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~~~~~l 80 (114)
+.+++||++++|++|+|+|+||.+|+|+|.+||+||||+|+||+++..++++.+++++||||++|+||++||+++++|+|
T Consensus 4 ~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~~~~l~~v~IRGnnI~~I~lpd~l~~~~~l 83 (126)
T 2y9a_D 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGSKIRFLILPDMLKNAPML 83 (126)
T ss_dssp CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSCCEEEEEEEECGGGEEEEECCSSCSSSSHH
T ss_pred ccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCcEeecccEEEeCCEEEEEEccccccchHHh
Confidence 45799999999999999999999999999999999999999999998888889999999999999999999999999999
Q ss_pred hhhCCCCCCCCCCCC
Q 033668 81 VEETPRVKPKKPTAG 95 (114)
Q Consensus 81 ~~~~~~~~~~~~~~~ 95 (114)
++...+.++++.+.+
T Consensus 84 ~~~~~k~~~~~~~~g 98 (126)
T 2y9a_D 84 KSMKNKNQGSGAGRG 98 (126)
T ss_dssp HHHHHHHC-------
T ss_pred hhhhhcccccccCcC
Confidence 998887766554443
No 3
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.93 E-value=7e-26 Score=147.48 Aligned_cols=72 Identities=24% Similarity=0.476 Sum_probs=69.6
Q ss_pred CchHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCC
Q 033668 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd 72 (114)
|.+++||++++|++|+|+||||.+|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||++||
T Consensus 4 ~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 4 GVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGRVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEECGGGEEEEEECC
T ss_pred cCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCCcEEEcCeEEEeCCEEEEEEcCC
Confidence 568999999999999999999999999999999999999999999988888999999999999999999997
No 4
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.92 E-value=5.1e-25 Score=152.16 Aligned_cols=83 Identities=25% Similarity=0.350 Sum_probs=56.9
Q ss_pred chHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCC-ceeecceEEEeeceEEEEecCCCCchhhhh
Q 033668 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK-NPVNLDHLSVRGNNIRYYILPDSLNLETLL 80 (114)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g-~~~~~~~v~IRG~~I~~I~lpd~l~~~~~l 80 (114)
.+++||++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..++ ++..++.+||||++|+||++||++..+|.+
T Consensus 16 ~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~~~~~lg~v~IRG~nI~~I~~pd~l~d~p~~ 95 (105)
T 4emh_A 16 LPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQDEVLSQVAK 95 (105)
T ss_dssp ----------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSCEEEEEEEEEECGGGEEEEEC----------
T ss_pred cHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCceeeEcCeEEEeCCeEEEEecCHHHhhhhhh
Confidence 5789999999999999999999999999999999999999999998777 478999999999999999999999777776
Q ss_pred hhhC
Q 033668 81 VEET 84 (114)
Q Consensus 81 ~~~~ 84 (114)
++..
T Consensus 96 ~~~~ 99 (105)
T 4emh_A 96 QQAQ 99 (105)
T ss_dssp ----
T ss_pred hhhc
Confidence 6544
No 5
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.90 E-value=1.2e-23 Score=136.92 Aligned_cols=73 Identities=19% Similarity=0.266 Sum_probs=68.5
Q ss_pred CchHHHHHhcCCCEEEEEEcCC-eEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCC
Q 033668 1 MKLVRFLMKLNNETVSIELKNG-TIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng-~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~ 73 (114)
|+++.+|++++|++|+|+|+|| ++|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||++||+
T Consensus 4 ~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 4 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKGEEKVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp CCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred cchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEecCCcEeECCeEEEeCCeEEEEEeCCC
Confidence 6899999999999999999999 999999999999999999999999877778899999999999999999974
No 6
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.89 E-value=2.7e-23 Score=134.94 Aligned_cols=74 Identities=22% Similarity=0.297 Sum_probs=69.0
Q ss_pred CchHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCC
Q 033668 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l 74 (114)
+.++.+|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++..+++..+++.+||||++|+||++||..
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEECC--
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCCcEeECCEEEECCCEEEEEEeCCCC
Confidence 45889999999999999999999999999999999999999999998887788999999999999999999874
No 7
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.89 E-value=6.1e-23 Score=132.82 Aligned_cols=72 Identities=19% Similarity=0.335 Sum_probs=67.3
Q ss_pred chHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCC
Q 033668 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73 (114)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~ 73 (114)
.++.+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||+.||+
T Consensus 4 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 4 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp CHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEEC--
T ss_pred hHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeCCceeECCEEEECCCEEEEEEeCCC
Confidence 588999999999999999999999999999999999999999999887778899999999999999999874
No 8
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.88 E-value=2e-22 Score=134.32 Aligned_cols=73 Identities=26% Similarity=0.291 Sum_probs=66.4
Q ss_pred chHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCC
Q 033668 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74 (114)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l 74 (114)
.+..+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+.++.+++.+||||++|+||++||.-
T Consensus 6 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 6 NPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp CHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTEEEEEESSEEECGGGEEEEEECC--
T ss_pred CcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEcCCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 4789999999999999999999999999999999999999999886554578999999999999999999874
No 9
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.87 E-value=4.8e-22 Score=130.51 Aligned_cols=72 Identities=21% Similarity=0.241 Sum_probs=67.2
Q ss_pred chHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCC
Q 033668 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDS 73 (114)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~ 73 (114)
.++.+|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++..+++...++.+||||++|+||+++|.
T Consensus 9 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 9 TAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp HHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSSCEEEEEEEEECGGGEEEEEEC--
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCCceeECCEEEECCCEEEEEEecCC
Confidence 467899999999999999999999999999999999999999999888888999999999999999999875
No 10
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.87 E-value=2.1e-22 Score=136.11 Aligned_cols=72 Identities=26% Similarity=0.295 Sum_probs=63.3
Q ss_pred CchHHHHHhcCCCEEEEEEcCC-eEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCC
Q 033668 1 MKLVRFLMKLNNETVSIELKNG-TIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng-~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd 72 (114)
|.++++|++++|++|+|+|+|| ++|+|+|.+||+|||++|+||+++..++++..++.+||||++|+||++|+
T Consensus 20 ~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~~~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 20 VNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFVAGVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEETTEEEEECCSEEECGGGEEEEEECC
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEcCCCeEeEcCEEEEcCCeEEEEEeCC
Confidence 4678999999999999999999 99999999999999999999999977767789999999999999999886
No 11
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.87 E-value=3.1e-22 Score=129.86 Aligned_cols=71 Identities=28% Similarity=0.339 Sum_probs=65.8
Q ss_pred chHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCC
Q 033668 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72 (114)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd 72 (114)
.+..+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++..+++.+||||++|+||+..|
T Consensus 4 ~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 4 SPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYVNGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp HHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEETTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred chHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEecCCcccEecEEEEcCCeEEEEEecC
Confidence 57899999999999999999999999999999999999999999876666789999999999999999765
No 12
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.86 E-value=1e-21 Score=129.05 Aligned_cols=70 Identities=19% Similarity=0.225 Sum_probs=66.3
Q ss_pred chHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCC
Q 033668 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPD 72 (114)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd 72 (114)
.++.+|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++ .+++...++.+||||++|+||++||
T Consensus 11 ~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~~~~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 11 TLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-IDGNVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp CHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-ETTEEEEEEEEEECGGGEEEEEECC
T ss_pred chHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-cCCcccCCCEEEECCCEEEEEEeCC
Confidence 578999999999999999999999999999999999999999999 5666789999999999999999987
No 13
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.86 E-value=1.1e-21 Score=127.55 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=54.0
Q ss_pred HHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCC
Q 033668 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSL 74 (114)
Q Consensus 4 ~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l 74 (114)
..+|++++|++|+|+|+||++|+|+|.+||+|||++|+||+++..+++...++.++|||++|.||+..|.+
T Consensus 6 ~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~~~~~lg~v~iRG~~I~~i~~~d~~ 76 (76)
T 3s6n_G 6 PPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEALERV 76 (76)
T ss_dssp --------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC----CBSSEEECSSSEEEEEC----
T ss_pred hHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCCcEeEcCEEEECCCeEEEEEeccCC
Confidence 46899999999999999999999999999999999999999998877889999999999999999987753
No 14
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.86 E-value=1.7e-21 Score=128.57 Aligned_cols=70 Identities=26% Similarity=0.315 Sum_probs=66.1
Q ss_pred CchHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEec
Q 033668 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYIL 70 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~l 70 (114)
+.++.+|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++..+++...++.+||||++|+||+.
T Consensus 14 ~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 14 QRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp TCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTEEEEEEEEEEECGGGEEEEEC
T ss_pred cChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCCcccCCCEEEECCCEEEEEEC
Confidence 4678999999999999999999999999999999999999999999888778899999999999999973
No 15
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.85 E-value=6.3e-21 Score=129.35 Aligned_cols=72 Identities=18% Similarity=0.149 Sum_probs=66.3
Q ss_pred CchHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEc-CCCceeecceEEEeeceEEEEecCC
Q 033668 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTL-KGKNPVNLDHLSVRGNNIRYYILPD 72 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~-~~g~~~~~~~v~IRG~~I~~I~lpd 72 (114)
+.++.+|+++++++|+|+|+||++|+|+|.+||+|||++|+||+++. .+++...++.+||||++|.||+...
T Consensus 19 ~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~IRG~nI~~i~p~~ 91 (94)
T 4emk_A 19 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGMCMLIPGG 91 (94)
T ss_dssp -CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTCCEEEEEEEEECSTTEEEEEECC
T ss_pred ccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCCcEeEcCEEEEcCCEEEEEEeCC
Confidence 35789999999999999999999999999999999999999999987 5667889999999999999999653
No 16
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.82 E-value=1.2e-20 Score=134.50 Aligned_cols=80 Identities=16% Similarity=0.141 Sum_probs=70.3
Q ss_pred hHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCchhhhhhh
Q 033668 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLETLLVE 82 (114)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~~~~~l~~ 82 (114)
|+.+|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++. ..+++.+||||++|+||++|+..-.++.|.+
T Consensus 1 f~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~~----~~~lg~v~IRG~nI~~I~~~d~~~d~~~f~~ 76 (130)
T 1m5q_A 1 FVAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNKA----GEKFNRVFIMYRYIVHIDSTERRIDMREFAK 76 (130)
T ss_dssp CHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECTT----CCEEEEEEECGGGEEEEEECCCCCCHHHHHH
T ss_pred ChhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEEc----CCEeceEEEeCCeEEEEEcCCcccCHHHHHH
Confidence 578999999999999999999999999999999999999999973 3688999999999999999999855555555
Q ss_pred hCCC
Q 033668 83 ETPR 86 (114)
Q Consensus 83 ~~~~ 86 (114)
...+
T Consensus 77 ~~~r 80 (130)
T 1m5q_A 77 QAEK 80 (130)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 4433
No 17
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.80 E-value=9.6e-20 Score=123.36 Aligned_cols=72 Identities=19% Similarity=0.239 Sum_probs=64.0
Q ss_pred hHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCC-------CceeecceEEEeeceEEEEecCCCC
Q 033668 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG-------KNPVNLDHLSVRGNNIRYYILPDSL 74 (114)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~-------g~~~~~~~v~IRG~~I~~I~lpd~l 74 (114)
+..+|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++..+ .....++.+||||++|.+|..++..
T Consensus 11 p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~ 89 (96)
T 3bw1_A 11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSED 89 (96)
T ss_dssp HHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC--
T ss_pred HHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcc
Confidence 67899999999999999999999999999999999999999997532 2356899999999999999988764
No 18
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.80 E-value=2.9e-19 Score=120.57 Aligned_cols=70 Identities=17% Similarity=0.229 Sum_probs=63.2
Q ss_pred chHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCC----C---------ceeecceEEEeeceEEEE
Q 033668 2 KLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG----K---------NPVNLDHLSVRGNNIRYY 68 (114)
Q Consensus 2 ~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~----g---------~~~~~~~v~IRG~~I~~I 68 (114)
.++.+|+.++|++|+|+|++|++|.|+|.+||+|||++|+||+++... + +...++.+||||++|.+|
T Consensus 9 ~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I 88 (93)
T 4emg_A 9 EPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILI 88 (93)
T ss_dssp CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEE
T ss_pred CCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEE
Confidence 478899999999999999999999999999999999999999998642 2 357899999999999999
Q ss_pred ecC
Q 033668 69 ILP 71 (114)
Q Consensus 69 ~lp 71 (114)
+.|
T Consensus 89 ~p~ 91 (93)
T 4emg_A 89 APP 91 (93)
T ss_dssp ECC
T ss_pred Eec
Confidence 976
No 19
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.80 E-value=6.1e-20 Score=122.50 Aligned_cols=70 Identities=20% Similarity=0.203 Sum_probs=62.0
Q ss_pred HHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcC----------CCceeecceEEEeeceEEEEecCCC
Q 033668 4 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK----------GKNPVNLDHLSVRGNNIRYYILPDS 73 (114)
Q Consensus 4 ~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~----------~g~~~~~~~v~IRG~~I~~I~lpd~ 73 (114)
..+|++++|++|+|+|+||++|.|+|.+||+|||++|+||+++.. ..+...++.+||||++|.+|++++.
T Consensus 6 ~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~ 85 (91)
T 1d3b_B 6 SSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGP 85 (91)
T ss_dssp -CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEEC
T ss_pred hHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCC
Confidence 457899999999999999999999999999999999999999641 2235789999999999999999875
No 20
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.79 E-value=1.4e-19 Score=122.22 Aligned_cols=72 Identities=18% Similarity=0.292 Sum_probs=65.4
Q ss_pred CchHHHHHhcCCCEEEEEE----cCCeEEEEEEEEecCccceEEccEEEEcC-CCceeecceEEEeeceEEEEecCC
Q 033668 1 MKLVRFLMKLNNETVSIEL----KNGTIVHGTITGVDISMNTHLKTVKLTLK-GKNPVNLDHLSVRGNNIRYYILPD 72 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeL----kng~~~~G~L~~~D~~MNi~L~dv~~~~~-~g~~~~~~~v~IRG~~I~~I~lpd 72 (114)
++++.+|.++++++|+|++ ++|++|+|+|.+||+|||++|+||+|+.. +++..+++.+||||++|.+|+.++
T Consensus 15 ~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 15 VQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp CCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSCCEEEEEEEEECGGGEEEEEEC-
T ss_pred cCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCCceeEcCeEEEeCCEEEEEEeCC
Confidence 3688999999999999999 99999999999999999999999999874 445689999999999999999765
No 21
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.78 E-value=1.9e-19 Score=126.43 Aligned_cols=73 Identities=16% Similarity=0.207 Sum_probs=64.8
Q ss_pred CchHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCC---------C-c-----eeecceEEEeeceE
Q 033668 1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG---------K-N-----PVNLDHLSVRGNNI 65 (114)
Q Consensus 1 m~l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~---------g-~-----~~~~~~v~IRG~~I 65 (114)
+.++.+|.++++++|+|+|+||++|.|+|.+||+||||+|+||+++..+ + . ...++.+||||++|
T Consensus 27 ~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nV 106 (121)
T 2fwk_A 27 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNV 106 (121)
T ss_dssp CCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGE
T ss_pred cCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEE
Confidence 4678999999999999999999999999999999999999999998632 3 2 57899999999999
Q ss_pred EEEecCCC
Q 033668 66 RYYILPDS 73 (114)
Q Consensus 66 ~~I~lpd~ 73 (114)
.+|+..+.
T Consensus 107 v~I~~~~~ 114 (121)
T 2fwk_A 107 AMLVPGGD 114 (121)
T ss_dssp EEEESSSC
T ss_pred EEEEecCC
Confidence 99998654
No 22
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.77 E-value=2.2e-18 Score=132.85 Aligned_cols=70 Identities=20% Similarity=0.197 Sum_probs=62.9
Q ss_pred HHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcC----------CCceeecceEEEeeceEEEEecCCCC
Q 033668 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK----------GKNPVNLDHLSVRGNNIRYYILPDSL 74 (114)
Q Consensus 5 ~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~----------~g~~~~~~~v~IRG~~I~~I~lpd~l 74 (114)
..|++++|++|+|+|+||++|+|+|.+||+||||+|+||+|+.. ..+..+++.+||||++|.+|++.+.-
T Consensus 7 ~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~pP 86 (231)
T 3pgw_B 7 SKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPP 86 (231)
T ss_pred HHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecCCC
Confidence 57999999999999999999999999999999999999999752 12468999999999999999987653
No 23
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.76 E-value=2e-18 Score=120.30 Aligned_cols=72 Identities=21% Similarity=0.288 Sum_probs=56.8
Q ss_pred hHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCC-------CceeecceEEEeeceEEEEecCCCC
Q 033668 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG-------KNPVNLDHLSVRGNNIRYYILPDSL 74 (114)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~-------g~~~~~~~v~IRG~~I~~I~lpd~l 74 (114)
.+..|.+++|++|+|+|+||++|.|+|.+||.||||+|+||+++..+ .....++.+||||++|.+|+.+|..
T Consensus 24 ~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ 102 (113)
T 4emk_C 24 SILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGS 102 (113)
T ss_dssp --------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC--
T ss_pred hHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCcc
Confidence 35678999999999999999999999999999999999999998654 2467999999999999999988753
No 24
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.76 E-value=1.9e-18 Score=120.81 Aligned_cols=73 Identities=18% Similarity=0.212 Sum_probs=62.5
Q ss_pred chHHHHHhcC--CCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCC----C--c--------eeecceEEEeeceE
Q 033668 2 KLVRFLMKLN--NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKG----K--N--------PVNLDHLSVRGNNI 65 (114)
Q Consensus 2 ~l~~~L~~l~--gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~----g--~--------~~~~~~v~IRG~~I 65 (114)
.++.+|+.++ +++|.|+|+||++|.|+|.+||+|||++|+||+++... + + ...++.+||||++|
T Consensus 27 ~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nV 106 (118)
T 1b34_B 27 GPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSV 106 (118)
T ss_dssp CHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGE
T ss_pred ChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEE
Confidence 5788999999 59999999999999999999999999999999997522 1 1 34699999999999
Q ss_pred EEEecCCCC
Q 033668 66 RYYILPDSL 74 (114)
Q Consensus 66 ~~I~lpd~l 74 (114)
.+|+.++..
T Consensus 107 v~I~~~~~~ 115 (118)
T 1b34_B 107 IVVLRNPLI 115 (118)
T ss_dssp EEEEECCCC
T ss_pred EEEEeCchh
Confidence 999998763
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.99 E-value=1.7e-09 Score=72.12 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=58.1
Q ss_pred HHHHhcCCCEEEEEEcCCeEEEEEEEEec-CccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCchh
Q 033668 5 RFLMKLNNETVSIELKNGTIVHGTITGVD-ISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLE 77 (114)
Q Consensus 5 ~~L~~l~gk~V~VeLkng~~~~G~L~~~D-~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~~~ 77 (114)
..|++++||+|.|.|.||.+|+|+|.+|| ...|++|.|+ . +...+..++|.|..|..|.+-+.-+.+
T Consensus 10 ~el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~---~---~~~~~~~~iI~G~aI~eI~v~~~~~~~ 77 (86)
T 1y96_A 10 LEWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNF---L---EDGSMSVTGIMGHAVQTVETMNEGDHR 77 (86)
T ss_dssp HHHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEE---C---TTSCEEEEEECGGGEEEEEEEECCCHH
T ss_pred HHHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeec---c---cCCeEEEEEEecceEEEEEEecchhHH
Confidence 46899999999999999999999999999 9999999999 2 234568999999999999887665444
No 26
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.19 E-value=0.0024 Score=42.42 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=54.5
Q ss_pred hcCCCEEEEEEcCCeEEEEEEEEec-CccceEEccEEEEcCCCc---------eeecceEEEeeceEEEEecCCC
Q 033668 9 KLNNETVSIELKNGTIVHGTITGVD-ISMNTHLKTVKLTLKGKN---------PVNLDHLSVRGNNIRYYILPDS 73 (114)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D-~~MNi~L~dv~~~~~~g~---------~~~~~~v~IRG~~I~~I~lpd~ 73 (114)
.++|++|.+..+.+..|+|+|..+| +.--+.|+||..+-.++. ..-++-+.-||+-|.-+++.+.
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 4689999999999999999999999 666799999998754432 2456889999999999988654
No 27
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=96.85 E-value=0.0026 Score=42.78 Aligned_cols=65 Identities=14% Similarity=0.157 Sum_probs=53.9
Q ss_pred HhcCCCEEEEEEcCCeEEEEEEEEec-CccceEEccEEEEcCCCc---------eeecceEEEeeceEEEEecCC
Q 033668 8 MKLNNETVSIELKNGTIVHGTITGVD-ISMNTHLKTVKLTLKGKN---------PVNLDHLSVRGNNIRYYILPD 72 (114)
Q Consensus 8 ~~l~gk~V~VeLkng~~~~G~L~~~D-~~MNi~L~dv~~~~~~g~---------~~~~~~v~IRG~~I~~I~lpd 72 (114)
..++|++|.+..|.+..|+|+|..+| +.--+.|+||..+-+++. ..-++-+.-||+-|.-+.+.+
T Consensus 15 ~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 15 TPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp -CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 46899999999999999999999999 666699999987654332 245788999999999998754
No 28
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=96.64 E-value=0.0083 Score=38.81 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=41.3
Q ss_pred HHHhcC--CCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCc
Q 033668 6 FLMKLN--NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLN 75 (114)
Q Consensus 6 ~L~~l~--gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~ 75 (114)
||+.+. ..+|+|.|.||..+.|++.+||.|+=+.-.+ + ...+|-=..|.+|.....++
T Consensus 11 fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~~-------g-----~~qLIYKhAISTI~p~~~v~ 70 (77)
T 1kq1_A 11 ALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQ-------G-----KQHLIYKHAISTYTVETEGQ 70 (77)
T ss_dssp HHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEET-------T-----EEEEEEGGGEEEEEC-----
T ss_pred HHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEEC-------C-----eeEEEEeeeEEEEeECcccc
Confidence 455554 7899999999999999999999998665432 2 24577778888888766554
No 29
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=96.59 E-value=0.009 Score=39.43 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=53.0
Q ss_pred hHHHHHhcCCCEEEEEEcCCeEEEEEEEEec-CccceEEccEEEEcCCCceeecceEEEeeceEEEEecC
Q 033668 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVD-ISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILP 71 (114)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D-~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lp 71 (114)
++.+|.++.|++|.+.|.++.++.|+..++| +..|+..++-. + += -..++..||.+-|..+++.
T Consensus 20 fLr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-T-Pi---Gv~~eAlLR~~Dii~~sF~ 84 (85)
T 1y96_B 20 YLRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-T-PI---GVQAEALLRCSDIISYTFK 84 (85)
T ss_dssp HHHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-C-TT---CCEEEEEEEGGGEEEEEEC
T ss_pred HHHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-C-Cc---ccchhhhhhcCCEEEEEec
Confidence 6788999999999999999999999999999 66777777753 1 11 2478999999999998763
No 30
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=96.58 E-value=0.0086 Score=38.44 Aligned_cols=58 Identities=26% Similarity=0.215 Sum_probs=44.8
Q ss_pred HHHhcC--CCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCch
Q 033668 6 FLMKLN--NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNL 76 (114)
Q Consensus 6 ~L~~l~--gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~~ 76 (114)
||+.+. ..+|+|.|.||..++|++.+||.|+=+.-.+ ...+|.=..|.+|.....+++
T Consensus 13 ~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~~~-------------~~~LIYKhAIsTI~p~~~v~~ 72 (74)
T 2ylb_A 13 FLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT-------------VSQMVYKHAISTVVPSRPVSH 72 (74)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS-------------SEEEEEGGGEEEEEESSCCCC
T ss_pred HHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC-------------ceEEEEeeeEEEEeEcccccC
Confidence 444444 7899999999999999999999998554321 356888888999987766543
No 31
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.45 E-value=0.01 Score=41.67 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=41.6
Q ss_pred HHhcCCCEEEEEEcCCeEEEEEEEEecCccceEE--ccEEEEcCCCceeecceEEEeeceEEEEecC
Q 033668 7 LMKLNNETVSIELKNGTIVHGTITGVDISMNTHL--KTVKLTLKGKNPVNLDHLSVRGNNIRYYILP 71 (114)
Q Consensus 7 L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L--~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lp 71 (114)
+..++|+.|.|+|++|..++|++..+| --+|.| ++|... ..-|+.+.|.-+.+-
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd-~k~LtL~~~~a~~s----------~~~I~asdI~DLkVl 62 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFD-SSNSILQLRLANDS----------TKSIVTKDIKDLRIL 62 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEE-TTTTEEEEEETTTE----------EEEEEGGGEEEEEEC
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeec-CCeeEEeccccccc----------cceeecccccceeee
Confidence 346789999999999999999999998 345666 998422 118888888866653
No 32
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=96.42 E-value=0.012 Score=38.19 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=43.8
Q ss_pred HHHhcC--CCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCch
Q 033668 6 FLMKLN--NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNL 76 (114)
Q Consensus 6 ~L~~l~--gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~~ 76 (114)
||+.+. ...|+|-|.||..++|++.+||.|+=+.-.+ + ...+|-=..|..|.....+++
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~~~-------g-----~qqlIYKhAISTI~p~~~v~l 75 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLESE-------G-----KQQLIYKHAISTFAPQKNVQL 75 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS-------S-----CEEEEEGGGEEEEEESSCCCC
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEEEC-------C-----eeEEEEcceEEEEeecccccc
Confidence 444444 7899999999999999999999998665432 2 234677778888887666543
No 33
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=96.33 E-value=0.0089 Score=39.35 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=51.0
Q ss_pred HhcCCCEEEEEEcCCe-EEEEEEEEecCc-cceEEccEEEEcCCCceeecceEEEeeceEEEEec
Q 033668 8 MKLNNETVSIELKNGT-IVHGTITGVDIS-MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYIL 70 (114)
Q Consensus 8 ~~l~gk~V~VeLkng~-~~~G~L~~~D~~-MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~l 70 (114)
.+++|+.|.|+.+++. .|.|.|..+|.. -||.|.+|. .+|-+.+..++.++++-|.-+.+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~~~~s~eVtls~~DI~~L~i 66 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGVKCLVPEVTFRAGDITELKI 66 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTEECSSSEEEEEGGGCSEEEE
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCCCCCCcEEEEEecChhheEE
Confidence 3678999999999998 999999999954 579999994 57767777889999998876655
No 34
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=96.00 E-value=0.0011 Score=45.70 Aligned_cols=18 Identities=78% Similarity=1.348 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 033668 96 RPVGRGRGRGRGRGRGRG 113 (114)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~ 113 (114)
+++|+++|||||+|||+.
T Consensus 100 ~g~grgrgrg~gr~~~~~ 117 (119)
T 1b34_A 100 RGRGRGRGRGRGRGRGGP 117 (119)
T ss_dssp ------------------
T ss_pred CCCcCCCCCCCCCCCCCC
Confidence 344444455555555543
No 35
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=95.83 E-value=0.032 Score=36.54 Aligned_cols=53 Identities=25% Similarity=0.186 Sum_probs=41.7
Q ss_pred CCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCchh
Q 033668 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLE 77 (114)
Q Consensus 12 gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~~~ 77 (114)
...|+|-|.||..++|++.+||.|+=+.-.+ ...+|-=..|..|.....+++.
T Consensus 19 ~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~~~-------------~qqLVYKHAISTI~p~~~v~l~ 71 (82)
T 1u1s_A 19 RVPVSIYLVNGIKLQGQIESFDQFVILLKNT-------------VSQMVYKHAISTVVPSRPVRLP 71 (82)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSEEEEESS-------------SCEEEEGGGEEEEEESSCCCCC
T ss_pred CCcEEEEEeCCcEEEEEEEEEcceEEEEecC-------------ceEEEEeeeeEEEeeccccccc
Confidence 7899999999999999999999998654311 2467777888888877766443
No 36
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.58 E-value=0.032 Score=37.99 Aligned_cols=52 Identities=23% Similarity=0.158 Sum_probs=41.1
Q ss_pred CCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCch
Q 033668 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNL 76 (114)
Q Consensus 12 gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~~ 76 (114)
...|+|.|.||..++|++.+||.|+=+.-.+ ...+|-=..|.+|.....+++
T Consensus 21 k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~-------------kqqLIYKHAISTI~p~~~v~l 72 (104)
T 2y90_A 21 RVPVSIYLVNGIKLQGQIESFDQFVILLKNT-------------VSQMVYKHAISTVVPSRPVSH 72 (104)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSEEEEESS-------------SEEEEEGGGEEEEEESSCCC-
T ss_pred CCcEEEEEeCCCEEEEEEEEECCcEEEEECC-------------ceEEEEeeeeEEEeecccccc
Confidence 4599999999999999999999998655322 356777888999987776643
No 37
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.22 E-value=0.046 Score=34.84 Aligned_cols=31 Identities=29% Similarity=0.345 Sum_probs=27.3
Q ss_pred CCCEEEEEEcCCeEEEEEEEEecCccceEEc
Q 033668 11 NNETVSIELKNGTIVHGTITGVDISMNTHLK 41 (114)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~ 41 (114)
...+|+|-|.||..++|++.+||.|+=+.-.
T Consensus 24 ~~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~ 54 (71)
T 2qtx_A 24 NGKKVKIFLRNGEVLDAEVTGVSNYEIMVKV 54 (71)
T ss_dssp TTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred cCCcEEEEEeCCeEEEEEEEEEcceEEEEEe
Confidence 4789999999999999999999999866543
No 38
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=94.50 E-value=0.26 Score=30.99 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=44.4
Q ss_pred hHHHHHhcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEec
Q 033668 3 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYIL 70 (114)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~l 70 (114)
|-..|..-.|++|-|-...+.+++|+|..||+-. +.|+||+.+.. .+-..++|+=.-|.+|.+
T Consensus 7 LdktL~~WKg~rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~G----Nk~k~liv~idDinWimL 69 (71)
T 1ycy_A 7 LEKVLKEWKGHKVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVIG----NRGKQMLIGLEDINWIML 69 (71)
T ss_dssp HHHHHHHHTTSEEEEEEC----CEEEEEEECSSE-EEEEEEEETTE----EEEEEEEEEGGGEEEEEE
T ss_pred HHHHHHHhCCcEEEEEecCcceeeeehhhcCcce-eehhhHHHHhc----cccceeEEEeccceEEEe
Confidence 4567888999999999999999999999999865 77899986532 233456666666666654
No 39
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=94.49 E-value=0.12 Score=33.46 Aligned_cols=53 Identities=23% Similarity=0.235 Sum_probs=42.5
Q ss_pred CCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEecCCCCchh
Q 033668 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILPDSLNLE 77 (114)
Q Consensus 12 gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lpd~l~~~ 77 (114)
..+|+|.|.||..+.|++.+||.|+=+. + ++ ...+|-=..|.+|.....+++.
T Consensus 20 k~~VtI~LvnG~~L~G~I~~fD~f~VlL-~-------~g-----~~qLIYKhAISTI~P~~~v~~~ 72 (79)
T 3sb2_A 20 HVPVSIYLVNGIKLQGHVESFDQYVVLL-R-------NT-----VTQMVYKHAISTVVPARAVNLS 72 (79)
T ss_dssp TCCEEEEETTSCEEEEEEEEECSSEEEE-E-------SS-----SEEEEEGGGEEEEEESSCCCCC
T ss_pred CCeEEEEEeCCCEEEEEEEEECCcEEEE-E-------CC-----ceEEEEeeeEEEEeecCceecc
Confidence 6689999999999999999999998664 2 22 2457888889999987777653
No 40
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=91.88 E-value=1 Score=28.56 Aligned_cols=53 Identities=19% Similarity=0.198 Sum_probs=37.5
Q ss_pred HHHhcC--CCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEe
Q 033668 6 FLMKLN--NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYI 69 (114)
Q Consensus 6 ~L~~l~--gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~ 69 (114)
.|++++ ...|.|+|.+|..++|++.-.|.++=+.-.+- + ..++|.=..|.||.
T Consensus 15 ~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~~------~-----~~~LI~R~AI~~Ik 69 (72)
T 3hfn_A 15 QLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADEN------S-----RQTTIWKQAIAYLQ 69 (72)
T ss_dssp HHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC--------------CEEEEEGGGEEEEE
T ss_pred HHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcCC------C-----CeEEEEeeeeEEEE
Confidence 344443 67899999999999999999999885554332 1 24666667777775
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=91.47 E-value=1 Score=30.35 Aligned_cols=60 Identities=13% Similarity=0.058 Sum_probs=50.6
Q ss_pred HhcCCCEEEEEEcCCe-EEEEEEEEecCccceEEccEEEEcCCCc--eeecceEEEeeceEEEEecC
Q 033668 8 MKLNNETVSIELKNGT-IVHGTITGVDISMNTHLKTVKLTLKGKN--PVNLDHLSVRGNNIRYYILP 71 (114)
Q Consensus 8 ~~l~gk~V~VeLkng~-~~~G~L~~~D~~MNi~L~dv~~~~~~g~--~~~~~~v~IRG~~I~~I~lp 71 (114)
...+|+.|.|...+.. .|.|.+..+|. -+|.|.++.. +|- +....++.++..-|.-+.+-
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr---NGiplk~~~~EVtLsa~DI~~L~II 70 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR---NGVPLRKQNAEVVLKCTDIRSIDLI 70 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE---TTEECSCSSSCEEEETTTEEEEEEE
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh---cCcCcCCCCceEEEEecchhheeee
Confidence 3678999999999996 99999999995 4489988874 776 67889999999999877663
No 42
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=89.43 E-value=1.3 Score=27.97 Aligned_cols=47 Identities=26% Similarity=0.244 Sum_probs=35.3
Q ss_pred CCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCceeecceEEEeeceEEEEe
Q 033668 12 NETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYI 69 (114)
Q Consensus 12 gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~ 69 (114)
-..|.|+|.+|..++|.+.-+|.++=+.-.+ ++ ..++|.=..|.||.
T Consensus 21 k~~V~I~L~tG~~l~G~i~WQD~~cl~L~~~------~~-----~~~LI~r~AI~~I~ 67 (70)
T 3hfo_A 21 QTPVEIKLLTGDSLFGTIRWQDTDGLGLVDD------SE-----RSTIVRLAAIAYIT 67 (70)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSEEEEECT------TC-----CEEEEEGGGEEEEE
T ss_pred CceEEEEecCCCEEEEEEEEeCCCEEEEEcC------CC-----CeEEEEeeeeEEEe
Confidence 6799999999999999999999988655432 11 24566666677765
No 43
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=79.83 E-value=2.1 Score=30.57 Aligned_cols=31 Identities=10% Similarity=0.174 Sum_probs=26.3
Q ss_pred HHHHhcCCCEEEEEEc----CCeEEEEEEEEecCc
Q 033668 5 RFLMKLNNETVSIELK----NGTIVHGTITGVDIS 35 (114)
Q Consensus 5 ~~L~~l~gk~V~VeLk----ng~~~~G~L~~~D~~ 35 (114)
.-+...+|+.|.|+|+ +.+.++|+|.++|+.
T Consensus 97 ~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~ 131 (164)
T 1ib8_A 97 DAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED 131 (164)
T ss_dssp HHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT
T ss_pred HHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC
Confidence 4567889999999994 449999999999965
No 44
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=75.85 E-value=4.1 Score=30.94 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=29.9
Q ss_pred hcCCCEEEEEEcCCeEEEEEEEEecCccceEEcc
Q 033668 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKT 42 (114)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~d 42 (114)
...|+.|+|.+.++.+++|+..++|+.=.+.|+.
T Consensus 221 ~~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~ 254 (270)
T 3rux_A 221 LTIGSRVRVELPGGQDVVGIARDIDDQGRLCLDV 254 (270)
T ss_dssp SSTTSEEEEECTTSCEEEEEEEEECTTSCEEEEE
T ss_pred cccCCEEEEEECCCeEEEEEEEEECCCCeEEEEE
Confidence 3569999999988999999999999998888864
No 45
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=69.27 E-value=4 Score=33.52 Aligned_cols=42 Identities=21% Similarity=0.274 Sum_probs=32.0
Q ss_pred CchHHHHHhcC---CCEEEEEEcCC---eEEEEEEEE-e----cCccceEEcc
Q 033668 1 MKLVRFLMKLN---NETVSIELKNG---TIVHGTITG-V----DISMNTHLKT 42 (114)
Q Consensus 1 m~l~~~L~~l~---gk~V~VeLkng---~~~~G~L~~-~----D~~MNi~L~d 42 (114)
|+..++|.++- |..|+|+.+++ .+|+|+|+- . |++.=|.|++
T Consensus 1 ~~~~~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~ 53 (438)
T 1zq1_A 1 MRVDEFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLEN 53 (438)
T ss_dssp -CHHHHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETT
T ss_pred CchHHHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccC
Confidence 67788888777 99999999998 899999983 3 3555555544
No 46
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=67.66 E-value=4.1 Score=30.16 Aligned_cols=47 Identities=15% Similarity=0.147 Sum_probs=34.4
Q ss_pred hcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCC-ceeecceEEEee
Q 033668 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK-NPVNLDHLSVRG 62 (114)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g-~~~~~~~v~IRG 62 (114)
...|+.|+|...++ ++|+..++|+.=.+.+++. +| .....++|.+|+
T Consensus 185 ~~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~-----~G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 185 LYLGEEVKLLGEGK--ITGKLVGLSEKGGALILTE-----EGIKEILSGEFSLRR 232 (233)
T ss_dssp TTTTSEEEETTEEE--EEEEEEEECTTSCEEEEET-----TEEEEECSCCEEEC-
T ss_pred cccCCEEEEEECCe--EEEEEEEECCCCeEEEEEC-----CCeEEEEEeEEEEec
Confidence 44799999987665 9999999999998888642 22 234557777764
No 47
>3by7_A Uncharacterized protein; metagenomics, structural genomics, joint center for structur genomics, JCSG, protein structure initiative; 2.60A {Uncultured marine organism}
Probab=61.63 E-value=32 Score=22.81 Aligned_cols=56 Identities=11% Similarity=0.136 Sum_probs=43.1
Q ss_pred EEEEcCCeEEEEEEEEecCccceEEccEEEEcC----CCc-----------eeecceEEEeeceEEEEecCCC
Q 033668 16 SIELKNGTIVHGTITGVDISMNTHLKTVKLTLK----GKN-----------PVNLDHLSVRGNNIRYYILPDS 73 (114)
Q Consensus 16 ~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~----~g~-----------~~~~~~v~IRG~~I~~I~lpd~ 73 (114)
.|+|++|.++.+.+..-|+. +.++|..+..+ .++ ...-+.++||-+.|.++.-+..
T Consensus 7 iiRlvSGEEIia~v~et~~~--i~i~nPv~V~~~~~e~gk~~gigF~pW~plsde~~~ii~~~~ViT~~e~~~ 77 (100)
T 3by7_A 7 IMRLVTGEDIIGNISESQGL--ITIKKAFVIIPMQATPGKPVQLVLSPWQPYTDDKEIVIDDSKVITITSPKD 77 (100)
T ss_dssp EEEETTSCEEEEEEEEETTE--EEEEEEEEEEEEC-----CCEEEEEESCTTBCCSEEEEEGGGEEEEECBCH
T ss_pred EEEecCccceeEEEEecCce--EEEECCEEEEEeecCCCcceeEeeecccccCcCceEEEchhhEEEEEeCCH
Confidence 58999999999999977663 88898887652 111 2456899999999999996643
No 48
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=58.59 E-value=10 Score=25.19 Aligned_cols=25 Identities=36% Similarity=0.735 Sum_probs=19.0
Q ss_pred HHHhcCC-CEEEEEEcCCeEEEEEEE
Q 033668 6 FLMKLNN-ETVSIELKNGTIVHGTIT 30 (114)
Q Consensus 6 ~L~~l~g-k~V~VeLkng~~~~G~L~ 30 (114)
++..+-| .+|.|+|.||+.+.||+.
T Consensus 21 ~~~~LdGq~~v~i~l~DGs~l~GTva 46 (101)
T 2e12_A 21 WVKLLDGQERVRIELDDGSMIAGTVA 46 (101)
T ss_dssp HHHTSCTTCEEEEEETTSCEEEEEES
T ss_pred HHHhhCCeeEEEEEEcCCCeEeeeec
Confidence 3334444 579999999999999873
No 49
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=55.63 E-value=19 Score=21.78 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCeEEEEEEEEecCc
Q 033668 11 NNETVSIELKNGTIVHGTITGVDIS 35 (114)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (114)
.|.-|.+.-.||..|-|++..+|..
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~ 30 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSA 30 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEEecC
Confidence 4889999999999999999999865
No 50
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=54.01 E-value=24 Score=25.96 Aligned_cols=30 Identities=23% Similarity=0.294 Sum_probs=27.3
Q ss_pred cCCCEEEEEEcCCeEEEEEEEEecCccceE
Q 033668 10 LNNETVSIELKNGTIVHGTITGVDISMNTH 39 (114)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~~D~~MNi~ 39 (114)
..|+.|+|...++..++|+..++|+.=.+.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~ 219 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL 219 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE
Confidence 579999999988877999999999988887
No 51
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=51.61 E-value=7.3 Score=25.11 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=21.6
Q ss_pred HHHhcCCCEEEEEEcCCeEEEEEEEEe
Q 033668 6 FLMKLNNETVSIELKNGTIVHGTITGV 32 (114)
Q Consensus 6 ~L~~l~gk~V~VeLkng~~~~G~L~~~ 32 (114)
.+..+.+..|.|+|+||.++.|+....
T Consensus 19 ElAc~~~~~l~l~l~dGe~~~g~a~D~ 45 (86)
T 1sg5_A 19 ELACQHHLMLTLELKDGEKLQAKASDL 45 (86)
T ss_dssp HHHHTTTTCEEEECTTTCCEEESSCEE
T ss_pred HHHHHcCCeEEEEEeCCCEEEEEEEee
Confidence 355677899999999999999965533
No 52
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=50.98 E-value=38 Score=21.13 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=19.7
Q ss_pred CCCEEEEEEcCCeEEEEEEEEec
Q 033668 11 NNETVSIELKNGTIVHGTITGVD 33 (114)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D 33 (114)
+|+-|.++-.||..|-|+++...
T Consensus 18 ~geDVL~rw~DG~fYLGtIVd~~ 40 (69)
T 2xk0_A 18 LQEDVFIKCNDGRFYLGTIIDQT 40 (69)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEC
T ss_pred cCCeEEEEecCCCEEEEEEEecC
Confidence 58899999999999999995433
No 53
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=48.76 E-value=27 Score=21.59 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.6
Q ss_pred CCCEEEEEEcCCeEEEEEEEEecCc
Q 033668 11 NNETVSIELKNGTIVHGTITGVDIS 35 (114)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (114)
.|..|+..-.||..|.|++..++..
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 5888999999999999999999964
No 54
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=48.55 E-value=15 Score=23.40 Aligned_cols=19 Identities=0% Similarity=-0.104 Sum_probs=13.4
Q ss_pred eEEEEecCCCCchhhhhhh
Q 033668 64 NIRYYILPDSLNLETLLVE 82 (114)
Q Consensus 64 ~I~~I~lpd~l~~~~~l~~ 82 (114)
-..||.+.+.-++..++..
T Consensus 52 g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp SEEEEEESSHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHH
Confidence 4577777777677777764
No 55
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=45.74 E-value=36 Score=25.99 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=34.5
Q ss_pred hcCCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCC-ceeecceEEEee
Q 033668 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGK-NPVNLDHLSVRG 62 (114)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g-~~~~~~~v~IRG 62 (114)
...|+.|+|...+ .+++|+..++|+.=.+.+++. +| .....++|.+|.
T Consensus 270 ~~~g~~V~v~~~~-~~~~G~~~gid~~G~L~v~~~-----~g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 270 NFINRPVKLIIGD-KEIFGISRGIDKQGALLLEQD-----GIIKPWMGGEISLRS 318 (321)
T ss_dssp TTTTSEEEEEETT-EEEEEEEEEECTTSCEEEEET-----TEEEEESSCEEEEC-
T ss_pred hhcCCEEEEEECC-cEEEEEEEEECCCCeEEEEEC-----CCEEEEEeeeEEEec
Confidence 4579999999765 579999999999988888642 22 134556776653
No 56
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=41.72 E-value=20 Score=26.40 Aligned_cols=44 Identities=16% Similarity=0.075 Sum_probs=30.0
Q ss_pred CCCEEEEEEcCCeEEEEEEEEecCccceEEccEEEEcCCCc--eeecceEEEe
Q 033668 11 NNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKN--PVNLDHLSVR 61 (114)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~~g~--~~~~~~v~IR 61 (114)
.|+.|+|...++ ++|+..++|+.=.+.+++. +|+ ....++|.+|
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~-----~G~~~~~~~Gev~~~ 233 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRLD-----SGEVKKVIYGDVSLR 233 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEECT-----TSCEEEECCSSCCCE
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEEC-----CCCEEEEEeeEEEEe
Confidence 799999998877 9999999999999988642 332 2344566554
No 57
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=40.51 E-value=39 Score=25.27 Aligned_cols=33 Identities=18% Similarity=0.269 Sum_probs=28.7
Q ss_pred HHHHhcCCCEEEEEEcCCeEEEEEEEEecCccc
Q 033668 5 RFLMKLNNETVSIELKNGTIVHGTITGVDISMN 37 (114)
Q Consensus 5 ~~L~~l~gk~V~VeLkng~~~~G~L~~~D~~MN 37 (114)
.+=+.|+|+.+..++.+|..+.|.|+.+..|+-
T Consensus 18 ~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~G 50 (219)
T 3uby_A 18 PLARAFLGQVLVRRLPNGTELRGRIVETEAYLG 50 (219)
T ss_dssp HHHHHTTTCEEEEECTTSCEEEEEEEEEEEECS
T ss_pred HHHHHhCCCEEEEEcCCCCEEEEEEEEEeeccC
Confidence 344679999999999999999999999999874
No 58
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.35 E-value=48 Score=20.57 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCeEEEEEEEEecCc
Q 033668 11 NNETVSIELKNGTIVHGTITGVDIS 35 (114)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (114)
.|+-|..+=.||..|-|++..+|.+
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~ 36 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSA 36 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETT
T ss_pred cCCEEEEEecCCcEEEeEEEEEecC
Confidence 5889999999999999999999954
No 59
>2d6f_A Glutamyl-tRNA(Gln) amidotransferase subunit D; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.38.3.1 c.88.1.1
Probab=37.64 E-value=29 Score=28.33 Aligned_cols=39 Identities=18% Similarity=0.279 Sum_probs=28.0
Q ss_pred hHHHHHhcC---CCEEEEEEcCCeEEEEEEEE-e----cCccceEEcc
Q 033668 3 LVRFLMKLN---NETVSIELKNGTIVHGTITG-V----DISMNTHLKT 42 (114)
Q Consensus 3 l~~~L~~l~---gk~V~VeLkng~~~~G~L~~-~----D~~MNi~L~d 42 (114)
..++|.++- |..|+|+.++ .+|+|+|+- . |++.=+.|++
T Consensus 7 ~~~~~~~~~~~~gd~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~kl~~ 53 (435)
T 2d6f_A 7 ARKFLESASIDVGDMVLVEKPD-VTYEGMVLDRADDADDRHIVLKLEN 53 (435)
T ss_dssp HHHHHHTTTCCTTCEEEEECSS-CEEEEEECCCCTTSCSSEEEEECTT
T ss_pred HHHHHHHcCCCCCCEEEEEECC-eEEEEEEecCcccCCCCeEEEEccC
Confidence 345677665 9999999877 999999993 3 3555555554
No 60
>1nh2_D Transcription initiation factor IIA small chain; transcription/DNA; HET: 5IU; 1.90A {Saccharomyces cerevisiae} SCOP: a.32.1.1 b.56.1.1 PDB: 1ytf_D* 1rm1_B
Probab=36.56 E-value=65 Score=21.99 Aligned_cols=30 Identities=17% Similarity=0.169 Sum_probs=23.8
Q ss_pred EcCCeEEEEEE---EEecCccceEEccEEEEcC
Q 033668 19 LKNGTIVHGTI---TGVDISMNTHLKTVKLTLK 48 (114)
Q Consensus 19 Lkng~~~~G~L---~~~D~~MNi~L~dv~~~~~ 48 (114)
+++..++.|.| ..||+...+.|+|+++...
T Consensus 55 vksk~sfKG~L~tYrfcDnVWtfilkd~~fk~~ 87 (121)
T 1nh2_D 55 TQSKLTVKGNLDTYGFCDDVWTFIVKNCQVTVE 87 (121)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred hccCCeEEeeeccccccCcEEEEEEeceEEEec
Confidence 45567778877 5689999999999998644
No 61
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=36.54 E-value=49 Score=22.47 Aligned_cols=37 Identities=11% Similarity=0.158 Sum_probs=28.4
Q ss_pred cCCCEEEEEEcCCeEEEEEEEEec--CccceEEccEEEE
Q 033668 10 LNNETVSIELKNGTIVHGTITGVD--ISMNTHLKTVKLT 46 (114)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~~D--~~MNi~L~dv~~~ 46 (114)
.+|++|..+-+||..|.|+++... .|..+.+.|-+.+
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~DgS~s 45 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFDDGSFS 45 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEETTSCEE
T ss_pred ccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcCCCCcc
Confidence 469999999999999999999876 4445555555444
No 62
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=36.23 E-value=18 Score=23.15 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.9
Q ss_pred CCCEEEEEEcCCeEEEEEEEEecCc
Q 033668 11 NNETVSIELKNGTIVHGTITGVDIS 35 (114)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (114)
.|+-|.++-+||..|-|++..+|..
T Consensus 29 eGeDVLarwsDGlfYLGTI~kV~~~ 53 (79)
T 2m0o_A 29 EGQDVLARWTDGLLYLGTIKKVDSA 53 (79)
T ss_dssp TTCEEEBCCTTSCCCEEEEEEEETT
T ss_pred cCCEEEEEecCCCEEeEEEEEeccC
Confidence 5889999999999999999999965
No 63
>1ub1_A MECP2, attachment region binding protein; chicken methyl-CPG-binding protein 2 (cmecp2), MAR-binding protein (ARBP), spectroscopy; NMR {Gallus gallus} SCOP: d.10.1.3
Probab=36.15 E-value=38 Score=23.61 Aligned_cols=11 Identities=18% Similarity=-0.067 Sum_probs=6.7
Q ss_pred ccEEEEcCCCc
Q 033668 41 KTVKLTLKGKN 51 (114)
Q Consensus 41 ~dv~~~~~~g~ 51 (114)
-|+.++.++|+
T Consensus 58 ~DVYY~SP~GK 68 (133)
T 1ub1_A 58 YDVYLINPQGK 68 (133)
T ss_dssp EEEEEECTTSC
T ss_pred eeEEEECCCCC
Confidence 46666666654
No 64
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=33.78 E-value=95 Score=20.65 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=23.0
Q ss_pred EcCCeEEEEEE---EEecCccceEEccEEEEc
Q 033668 19 LKNGTIVHGTI---TGVDISMNTHLKTVKLTL 47 (114)
Q Consensus 19 Lkng~~~~G~L---~~~D~~MNi~L~dv~~~~ 47 (114)
.++..++.|.| ..||+...+.|+|+++..
T Consensus 51 vksk~sfKG~L~tYrfcDnVWTf~lkd~~fk~ 82 (108)
T 1nvp_D 51 VRNRVNFRGSLNTYRFCDNVWTFVLNDVEFRE 82 (108)
T ss_dssp CCCEEEEEEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred hccCCeEeeccCCccccCcEEEEEEeceEEEe
Confidence 34557777866 578999999999999864
No 65
>3ggm_A Uncharacterized protein BT9727_2919; bacillus cereus group., structural genomics, PSI-2, protein structure initiative; 2.00A {Bacillus thuringiensis serovarkonkukian}
Probab=32.72 E-value=72 Score=18.89 Aligned_cols=36 Identities=11% Similarity=-0.023 Sum_probs=26.5
Q ss_pred cceEEccEEEEcCCCceeecceEEEeeceEEEEecC
Q 033668 36 MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYILP 71 (114)
Q Consensus 36 MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~lp 71 (114)
+.+.+.++.+...++.......+.|.+..|..|...
T Consensus 4 ~~~li~n~~i~~~~~~~~~~~~i~I~~g~I~~ig~~ 39 (81)
T 3ggm_A 4 PDMILYNGKITTLDPSQPEVSAIAITDGLITAVGGD 39 (81)
T ss_dssp CSEEEESSEEECSCTTCSEESEEEEETTEEEEEESG
T ss_pred CCEEEECCEEEeCCCCCccccEEEEECCEEEEEeCc
Confidence 456788888877655444467899999999999743
No 66
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=32.68 E-value=53 Score=25.30 Aligned_cols=33 Identities=12% Similarity=0.123 Sum_probs=27.0
Q ss_pred hcCCCEEEEEEcCCeEEEEEEEEecCccceEEcc
Q 033668 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKT 42 (114)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~d 42 (114)
...|+.|+|... +.+++|+..++|+.=.+.|++
T Consensus 276 ~~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 276 NIWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp SCSSSCEEEECC--CEEEEEEEEECTTSCEEEEE
T ss_pred hhcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEE
Confidence 356999999875 457999999999999988864
No 67
>3v4h_A Hypothetical protein; structural genomics, center for structural genomics of infec diseases, csgid, unknown function; 2.10A {Yersinia pestis}
Probab=32.17 E-value=96 Score=22.16 Aligned_cols=58 Identities=5% Similarity=0.027 Sum_probs=38.3
Q ss_pred CCEE-EEEEcCCeEEEEEEEEecCccceEEccEEEEcC------CCceeecceEEEeeceEEEEecCCC
Q 033668 12 NETV-SIELKNGTIVHGTITGVDISMNTHLKTVKLTLK------GKNPVNLDHLSVRGNNIRYYILPDS 73 (114)
Q Consensus 12 gk~V-~VeLkng~~~~G~L~~~D~~MNi~L~dv~~~~~------~g~~~~~~~v~IRG~~I~~I~lpd~ 73 (114)
|+.+ .|++.--+. -|. -..|+.+.|+||.++.- ++.......+.++=..|.+-+.+..
T Consensus 100 Ge~l~~v~i~~~R~-gG~---~~~Y~~i~L~~v~Issis~~~~~~~~~~p~E~vsl~Y~kI~w~y~~q~ 164 (185)
T 3v4h_A 100 GKHIKNVQFVLRKA-GGD---PLEYLTIKFTDVIITRVDMAGSLEDETRPREEIRFSFTKMTQDYVMQN 164 (185)
T ss_dssp TCCEEEEEEEEEC--------CCEEEEEEEEEEEEEEEEEEEESCC--CCEEEEEEECSEEEEEEEECC
T ss_pred CCccCcEEEEEEEC-CCC---eEEEEEEEEEeEEEEEEEecccCCCCCceEEEEEEEeCEEEEEEEEEC
Confidence 7766 666665554 453 56899999999998742 2234566788888888888776644
No 68
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=30.29 E-value=83 Score=22.79 Aligned_cols=29 Identities=28% Similarity=0.312 Sum_probs=24.7
Q ss_pred hcCCCEEEEEEcCCeEEEEEEEEecCccceEEcc
Q 033668 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKT 42 (114)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~d 42 (114)
...|+.|+| ++ ++|+..++|+.=.+.++.
T Consensus 191 ~~~g~~V~v---~~--~~G~~~gId~~G~L~v~~ 219 (235)
T 3bfm_A 191 HGMGEARTE---AG--RSGTFLGVDEDFGMLLRD 219 (235)
T ss_dssp TTTTSEEEE---TT--EEEEEEEECTTCCEEEEC
T ss_pred hhcCCEEEE---Ee--EEEEEEEECCCCeEEEEe
Confidence 457999999 45 999999999999988864
No 69
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.81 E-value=52 Score=20.12 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=22.8
Q ss_pred CCCEEEEEEcCCeEEEEEEEEecCc
Q 033668 11 NNETVSIELKNGTIVHGTITGVDIS 35 (114)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (114)
.|+-|..+=.||..|-|++..+|..
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~ 34 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSS 34 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCST
T ss_pred cCCEEEEEecCCCEEEEEEEEEecC
Confidence 5889999999999999999999965
No 70
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=28.78 E-value=98 Score=20.06 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=25.5
Q ss_pred hHHHHHhcCCCEEEEEEcCC----eEEEEEEEEec
Q 033668 3 LVRFLMKLNNETVSIELKNG----TIVHGTITGVD 33 (114)
Q Consensus 3 l~~~L~~l~gk~V~VeLkng----~~~~G~L~~~D 33 (114)
+-..|.+.+|++|.|....| .+-+|+|..+=
T Consensus 16 IK~~l~~~vG~~V~l~An~GRkK~~er~GvL~etY 50 (90)
T 3fb9_A 16 IKEEIKAHEGQVVEMTLENGRKRQKNRLGKLIEVY 50 (90)
T ss_dssp HHHHHHHTTTSEEEEEECCSSSCCSCEEEEEEEEC
T ss_pred HHHHHHHcCCCEEEEEecCCcccEEEEEEEEEEec
Confidence 34568899999999999998 46789998764
No 71
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=26.96 E-value=83 Score=25.15 Aligned_cols=31 Identities=16% Similarity=0.359 Sum_probs=26.7
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccceEEccE
Q 033668 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (114)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNi~L~dv 43 (114)
..|.|.+.+|.+|..++...|...++-|=.+
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4689999999999999999999999766444
No 72
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=26.54 E-value=70 Score=24.11 Aligned_cols=39 Identities=18% Similarity=0.136 Sum_probs=25.7
Q ss_pred EecCccceEEccEEEEcCCCc-eeecceEEEeeceEEEEe
Q 033668 31 GVDISMNTHLKTVKLTLKGKN-PVNLDHLSVRGNNIRYYI 69 (114)
Q Consensus 31 ~~D~~MNi~L~dv~~~~~~g~-~~~~~~v~IRG~~I~~I~ 69 (114)
++|..|.+.+.++.+.+.++. ...-..+.|.+..|..|.
T Consensus 2 ~~~~~~~~li~n~~v~~~~~~~~~~~~~v~I~~g~I~~vg 41 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDGKSDQVQSRISIVIDGNIISDIK 41 (418)
T ss_dssp -----CCEEEEEEEECCSSCSSCEEEEEEEEETTEEEEEE
T ss_pred CCCCCccEEEEeeEEEeCCCCccccCcEEEEECCEEEEEe
Confidence 567788889999888765543 234468899999998886
No 73
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=26.29 E-value=90 Score=24.74 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.9
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccceEEccE
Q 033668 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (114)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNi~L~dv 43 (114)
..+.|.+.++.+|.+++...|...+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 5789999999999999999999988766544
No 74
>1o9y_A HRCQ2; secretory protein, HRP, type III secretion system, phytopathogenicity; 2.29A {Pseudomonas syringae} SCOP: b.139.1.1
Probab=26.22 E-value=1e+02 Score=18.97 Aligned_cols=35 Identities=6% Similarity=0.201 Sum_probs=27.3
Q ss_pred hcCCCEEEEEEcCCeEEEEEEEEecCccceEEccE
Q 033668 9 KLNNETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (114)
Q Consensus 9 ~l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv 43 (114)
...+..|.|...+-..++|.+..+|+.+=+.+.+.
T Consensus 46 ~~~~e~v~i~vng~~~~~ge~g~~~~~~avrI~~~ 80 (84)
T 1o9y_A 46 GISPGHATLCHGEQVVAEGELVDVEGRLGLQITRL 80 (84)
T ss_dssp SSCTTEEEEEETTEEEEEEEEEEETTEEEEEEEEE
T ss_pred CCCCCCEEEEECCEEEEEEEEEEECCEEEEEEEEe
Confidence 44567788888888889999999998887777654
No 75
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=24.81 E-value=55 Score=25.47 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=20.2
Q ss_pred HhcCCCEEEEEEcCCeEEEEEEEEe
Q 033668 8 MKLNNETVSIELKNGTIVHGTITGV 32 (114)
Q Consensus 8 ~~l~gk~V~VeLkng~~~~G~L~~~ 32 (114)
+.+.+++|+|.+++|..|.|++-..
T Consensus 95 ~~~~~~~v~i~t~~g~~~~Gvig~~ 119 (355)
T 3kl9_A 95 MVVSSQRFKLLTRDGHEIPVISGSV 119 (355)
T ss_dssp TTCSSCEEEEECTTSCEEEEEEC--
T ss_pred cccCCCEEEEEcCCCCEEEEEEeCc
Confidence 4577999999999999999988543
No 76
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=22.60 E-value=1e+02 Score=23.62 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=26.0
Q ss_pred CEEEEEEcCCeEEEEEEEEecCccceEEccE
Q 033668 13 ETVSIELKNGTIVHGTITGVDISMNTHLKTV 43 (114)
Q Consensus 13 k~V~VeLkng~~~~G~L~~~D~~MNi~L~dv 43 (114)
..+.|.+.++..|.+++..+|...+|-|=.+
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 3688999999999999999999888665443
No 77
>3uep_A YSCQ-C, type III secretion protein; cytosol, protein transport; 2.25A {Yersinia pseudotuberculosis}
Probab=22.46 E-value=1.1e+02 Score=19.43 Aligned_cols=35 Identities=9% Similarity=0.196 Sum_probs=28.1
Q ss_pred cCCCEEEEEEcCCeEEEEEEEEecCccceEEccEE
Q 033668 10 LNNETVSIELKNGTIVHGTITGVDISMNTHLKTVK 44 (114)
Q Consensus 10 l~gk~V~VeLkng~~~~G~L~~~D~~MNi~L~dv~ 44 (114)
..+..|.|...+-..++|.+..+|+.+=+.+.+..
T Consensus 51 ~~~~~v~i~vng~~i~~Ge~g~~~~~~aVrI~~i~ 85 (96)
T 3uep_A 51 PVDGEVRLLANGRLLGHGRLVEIQGRLGVRIERLT 85 (96)
T ss_dssp ESSCEEEEEETTEEEEEEEEEEETTEEEEEEEEEC
T ss_pred CCCCcEEEEECCEEEEEEEEEEECCEEEEEEEEec
Confidence 34667777777778899999999999888887753
No 78
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=21.62 E-value=1.5e+02 Score=18.05 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCeEEEEEEEEecCc
Q 033668 11 NNETVSIELKNGTIVHGTITGVDIS 35 (114)
Q Consensus 11 ~gk~V~VeLkng~~~~G~L~~~D~~ 35 (114)
+|..|.-.-.|+..|.+++.+++..
T Consensus 9 vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 9 INEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEcCCCCEeeEEEEEECCC
Confidence 5778888888999999999999986
No 79
>3ooq_A Amidohydrolase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, H PSI-2; 2.06A {Thermotoga maritima}
Probab=20.41 E-value=1e+02 Score=23.12 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=25.4
Q ss_pred cceEEccEEEEcCCCceeecceEEEeeceEEEEec
Q 033668 36 MNTHLKTVKLTLKGKNPVNLDHLSVRGNNIRYYIL 70 (114)
Q Consensus 36 MNi~L~dv~~~~~~g~~~~~~~v~IRG~~I~~I~l 70 (114)
|.+.++++.+.+.++.... ..+.|.+..|..|..
T Consensus 5 ~~~~i~~~~i~~~~~~~~~-~~v~i~~g~I~~i~~ 38 (396)
T 3ooq_A 5 VKILFKNATVFPITSRPFK-GDVLVSNGKVEKVGE 38 (396)
T ss_dssp -CEEEEEEEECCSSSCCEE-EEEEEETTEEEEEES
T ss_pred ceEEEECcEEEeCCCCeEE-eEEEEECCEEEEecC
Confidence 5678888888876655445 788999999888863
Done!