BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033672
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|F Chain F, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|S Chain S, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1L|F Chain F, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|S Chain S, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
Length = 110
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 30/39 (76%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQV 85
+KEAL RLP+++ + R R+KRA+DLS+KH LP++ V
Sbjct: 43 VKEALKRLPKDLYNERMFRIKRALDLSLKHRILPKEQWV 81
>pdb|3H1H|F Chain F, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|S Chain S, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|F Chain F, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|S Chain S, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|F Chain F, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|S Chain S, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|F Chain F, Chicken Cytochrome Bc1 Complex With Zn++ And An
Iodinated Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|S Chain S, Chicken Cytochrome Bc1 Complex With Zn++ And An
Iodinated Derivative Of Kresoxim-Methyl Bound
pdb|3L70|F Chain F, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|S Chain S, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|F Chain F, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|S Chain S, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|F Chain F, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|S Chain S, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|F Chain F, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|S Chain S, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|F Chain F, Cytochrome Bc1 Complex From Chicken With Famoxadone
Bound
pdb|3L74|S Chain S, Cytochrome Bc1 Complex From Chicken With Famoxadone
Bound
pdb|3L75|F Chain F, Cytochrome Bc1 Complex From Chicken With Fenamidone
Bound
pdb|3L75|S Chain S, Cytochrome Bc1 Complex From Chicken With Fenamidone
Bound
pdb|3TGU|F Chain F, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
Moa Inhibitor Bound
pdb|3TGU|S Chain S, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed
Moa Inhibitor Bound
Length = 110
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 29/39 (74%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQV 85
+KEAL RLP ++ + R R+KRA+DLS+KH LP++ V
Sbjct: 43 VKEALKRLPEDLYNERMFRIKRALDLSLKHRILPKEQWV 81
>pdb|1BGY|F Chain F, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|R Chain R, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|F Chain F, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|F Chain F, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|F Chain F, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex At 2.4 Angstrom
pdb|1NTZ|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complex Bound With Ubiquinone
pdb|1NU1|F Chain F, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|F Chain F, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|S Chain S, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|F Chain F, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|S Chain S, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With
Azoxystrobin
pdb|2A06|F Chain F, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|S Chain S, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With
Stigmatellin A
pdb|1SQQ|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|F Chain F, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|F Chain F, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|FF Chain f, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 110
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
+KEA+ RLP + D R R+KRA+DLSM+ + LP++
Sbjct: 43 VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKE 78
>pdb|1SQP|F Chain F, Crystal Structure Analysis Of Bovine Bc1 With
Myxothiazol
Length = 110
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
+KEA+ RLP + D R R+KRA+DLSM+ + LP++
Sbjct: 43 VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKE 78
>pdb|1QCR|F Chain F, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 103
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
+KEA+ RLP + D R R+KRA+DLSM+ + LP++
Sbjct: 36 VKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKE 71
>pdb|1BCC|F Chain F, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|F Chain F, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|F Chain F, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 109
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82
+KEA+ RLP + D R R+KRA+DL+M+ + LP++
Sbjct: 43 VKEAIRRLPENLYDDRMFRIKRALDLNMRQQILPKE 78
>pdb|1KYO|G Chain G, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|R Chain R, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|3CX5|G Chain G, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|R Chain R, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|G Chain G, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|R Chain R, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 126
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLP--------EDLQVLVSFILR 92
++ AL RLP + AR R+ RA + H LP ED+ L+ +IL
Sbjct: 55 MQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYILE 108
>pdb|2IBZ|F Chain F, Yeast Cytochrome Bc1 Complex With Stigmatellin
Length = 127
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLP--------EDLQVLVSFILR 92
++ AL RLP + AR R+ RA + H LP ED+ L+ +IL
Sbjct: 56 MQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYILE 109
>pdb|1EZV|F Chain F, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KB9|G Chain G, Yeast Cytochrome Bc1 Complex
pdb|1P84|G Chain G, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
Length = 125
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 8/53 (15%)
Query: 47 IKEALDRLPREIVDARNQRLKRAMDLSMKHEYLP--------EDLQVLVSFIL 91
++ AL RLP + AR R+ RA + H LP ED+ L+ +IL
Sbjct: 54 MQTALRRLPEDESYARAYRIIRAHQTELTHHLLPRNEWIKAQEDVPYLLPYIL 106
>pdb|2E0A|A Chain A, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2E0A|B Chain B, Crystal Structure Of Human Pyruvate Dehydrogenase Kinase 4
In Complex With Amppnp
pdb|2ZDX|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDX|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|A Chain A, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
pdb|2ZDY|B Chain B, Inhibitor-Bound Structures Of Human Pyruvate Dehydrogenase
Kinase 4
Length = 394
Score = 26.2 bits (56), Expect = 4.8, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 47 IKEALDRLPREIVDARNQRLKRA------MDLSMKHEYLPEDLQVLVSFI 90
I + +D LP ++V+ + +L ++ MDL HE P+D + L F+
Sbjct: 51 ILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFV 100
>pdb|2ZKJ|A Chain A, Crystal Structure Of Human Pdk4-Adp Complex
pdb|2ZKJ|B Chain B, Crystal Structure Of Human Pdk4-Adp Complex
pdb|3D2R|A Chain A, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
pdb|3D2R|B Chain B, Crystal Structure Of Pyruvate Dehydrogenase Kinase Isoform
4 In Complex With Adp
Length = 394
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 47 IKEALDRLPREIVDARNQRLKRA------MDLSMKHEYLPEDLQVLVSFI 90
I + +D LP ++V+ + +L ++ MDL HE P+D + L F+
Sbjct: 51 ILKEIDILPTQLVNTSSVQLVKSWYIQSLMDLVEFHEKSPDDQKALSDFV 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.138 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,428,475
Number of Sequences: 62578
Number of extensions: 63774
Number of successful extensions: 235
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 14
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)