Query 033672
Match_columns 114
No_of_seqs 101 out of 201
Neff 3.8
Searched_HMMs 46136
Date Fri Mar 29 04:58:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033672.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033672hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02271 UCR_14kD: Ubiquinol-c 100.0 9.5E-40 2E-44 234.3 7.8 91 2-99 4-98 (105)
2 KOG3440 Ubiquinol cytochrome c 100.0 3.8E-36 8.2E-41 220.7 7.3 89 3-98 10-102 (122)
3 COG0568 RpoD DNA-directed RNA 65.7 3.3 7.2E-05 35.4 1.3 35 23-58 117-151 (342)
4 TIGR03761 ICE_PFL4669 integrat 62.9 12 0.00025 30.1 3.8 49 4-60 150-201 (216)
5 KOG1673 Ras GTPases [General f 52.2 13 0.00027 30.0 2.4 38 8-53 107-150 (205)
6 PRK07122 RNA polymerase sigma 42.7 22 0.00048 28.2 2.5 61 23-85 55-124 (264)
7 PF08900 DUF1845: Domain of un 40.6 33 0.00071 27.1 3.1 47 4-58 152-201 (217)
8 PF08134 cIII: cIII protein fa 35.9 43 0.00092 21.1 2.4 17 55-71 18-34 (44)
9 PRK05901 RNA polymerase sigma 32.7 26 0.00056 31.3 1.5 60 25-85 288-355 (509)
10 TIGR02393 RpoD_Cterm RNA polym 30.5 24 0.00053 27.1 0.9 60 25-85 17-84 (238)
11 PRK05658 RNA polymerase sigma 30.3 25 0.00054 31.4 1.0 60 23-84 395-463 (619)
12 PF00462 Glutaredoxin: Glutare 28.3 39 0.00084 20.2 1.4 31 23-54 14-44 (60)
13 PF09803 DUF2346: Uncharacteri 26.6 1.6E+02 0.0035 20.1 4.3 37 35-72 39-75 (80)
14 PF12536 DUF3734: Patatin phos 24.2 76 0.0017 22.4 2.5 30 45-74 22-51 (108)
15 KOG0887 60S ribosomal protein 24.0 24 0.00052 26.1 -0.1 17 95-111 43-59 (111)
16 PF08707 PriCT_2: Primase C te 23.1 53 0.0012 21.4 1.4 26 46-71 1-28 (78)
17 KOG4104 Ganglioside-induced di 22.1 40 0.00088 24.9 0.7 40 12-54 55-95 (113)
18 PF12448 Milton: Kinesin assoc 22.0 60 0.0013 25.0 1.6 13 43-55 78-90 (163)
19 PF06420 Mgm101p: Mitochondria 21.9 30 0.00066 27.3 0.0 9 106-114 116-124 (171)
No 1
>PF02271 UCR_14kD: Ubiquinol-cytochrome C reductase complex 14kD subunit; InterPro: IPR003197 The cytochrome bd type terminal oxidases catalyse quinol dependent, Na+ independent oxygen uptake []. Members of this family are integral membrane proteins and contain a protoheame IX centre B558. Cytochrome bd may play an important role in microaerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae, where it is expressed under all conditions that permit diazotrophy []. The 14 kDa (or VI) subunit of the complex is not directly involved in electron transfer, but has a role in assembly of the complex [].; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006122 mitochondrial electron transport, ubiquinol to cytochrome c; PDB: 3L74_F 3H1K_F 3L72_F 3H1L_S 3L71_S 3L70_S 3L73_F 3L75_F 1P84_G 3CXH_G ....
Probab=100.00 E-value=9.5e-40 Score=234.27 Aligned_cols=91 Identities=37% Similarity=0.637 Sum_probs=75.3
Q ss_pred hHHHHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCc
Q 033672 2 ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPE 81 (114)
Q Consensus 2 ~~~L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPk 81 (114)
+++|+++++|+++||.| ++||||+||+||||++| +||+|+|||+|||+++.++|+|||+||+|||++|++||+
T Consensus 4 ~p~~~~~~~~~~~w~~n------~~gyrk~GL~~DDl~~e-~~~~v~eAl~RLp~~~~~~R~~Ri~RA~~ls~~~~~LPk 76 (105)
T PF02271_consen 4 SPWLSKFFKPLAKWYYN------ASGYRKYGLRYDDLLNE-EDPDVQEALRRLPPDEQYDRNFRIKRAMQLSLKHQYLPK 76 (105)
T ss_dssp SCHHHHHHHHHHHHHHH------HHGGGGGT--GGGGS----SHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHT----G
T ss_pred cHHHHHHHHHHHHHHHH------hcchhhhcccHHhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCH
Confidence 47899999999999998 79999999999999997 699999999999999999999999999999999999999
Q ss_pred ccchhh----hhHHHHHhhhhh
Q 033672 82 DLQVLV----SFILRKCTEASI 99 (114)
Q Consensus 82 e~q~k~----pYL~p~i~Ea~~ 99 (114)
|+||++ |||.|||+|++.
T Consensus 77 e~wtk~e~d~~YL~p~i~ev~~ 98 (105)
T PF02271_consen 77 EQWTKPEEDVPYLQPYIEEVEK 98 (105)
T ss_dssp GGS--GGGS--SSHHHHHHHHH
T ss_pred HHccCcccchHHHHHHHHHHHH
Confidence 999999 999999999875
No 2
>KOG3440 consensus Ubiquinol cytochrome c reductase, subunit QCR7 [Energy production and conversion]
Probab=100.00 E-value=3.8e-36 Score=220.74 Aligned_cols=89 Identities=46% Similarity=0.724 Sum_probs=83.3
Q ss_pred HHHHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCcc
Q 033672 3 SLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPED 82 (114)
Q Consensus 3 ~~L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPke 82 (114)
+.+.++|.|+++|+.| .+|||+|||+||||+.| +|++|+|||||||++++|+|++||+||||||++|++|||+
T Consensus 10 ~~~~k~~~~~~~~~~n------l~g~rkyGL~~DDl~~e-~n~dvkeAlrRLPr~~~d~R~~Ri~RA~~Lsm~h~~LPk~ 82 (122)
T KOG3440|consen 10 PVLGKLFLPLRKWAYN------LSGFRKYGLRYDDLYYE-ENEDVKEALRRLPRELYDARNYRIKRAMDLSMTHEILPKE 82 (122)
T ss_pred ccchHHHHHHHHHHHH------HhhhhhhCccccccccc-cCHHHHHHHHHCcHHHHHHHHHHHHHHHHHhhhcccCCHH
Confidence 3567899999999998 89999999999999998 5999999999999999999999999999999999999999
Q ss_pred cchhh----hhHHHHHhhhh
Q 033672 83 LQVLV----SFILRKCTEAS 98 (114)
Q Consensus 83 ~q~k~----pYL~p~i~Ea~ 98 (114)
+||++ +||.||+.|++
T Consensus 83 ewtk~eed~~YL~pyL~ev~ 102 (122)
T KOG3440|consen 83 EWTKYEEDVKYLEPYLAEVE 102 (122)
T ss_pred HhhcccchhhHHHHHHHHHH
Confidence 99999 88888888765
No 3
>COG0568 RpoD DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription]
Probab=65.69 E-value=3.3 Score=35.36 Aligned_cols=35 Identities=23% Similarity=0.419 Sum_probs=31.0
Q ss_pred HHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHH
Q 033672 23 TISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREI 58 (114)
Q Consensus 23 ~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~ 58 (114)
+++.+|..+||-+-||+.| .|.-+.+|+.+..++-
T Consensus 117 sIAk~Y~~rGL~~~DLIQE-GniGLmkAVekFdp~r 151 (342)
T COG0568 117 SIAKKYTGRGLPFLDLIQE-GNIGLMKAVEKFDPEK 151 (342)
T ss_pred HHHHHhhcCCCcHHHHHhc-ccHHHHHHHHhcCccc
Confidence 3478999999999999997 6999999999998873
No 4
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=62.86 E-value=12 Score=30.12 Aligned_cols=49 Identities=22% Similarity=0.432 Sum_probs=35.9
Q ss_pred HHHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhc---CCHHHHH
Q 033672 4 LLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDR---LPREIVD 60 (114)
Q Consensus 4 ~L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrR---LP~~~~~ 60 (114)
||......+.+.|.- ...||-.|+-.||... .|+..++|+.+ ||+++..
T Consensus 150 ~l~~g~~~vR~vf~~------~~~yr~~gvtR~D~~~--~n~~a~~Aie~~G~lp~dIL~ 201 (216)
T TIGR03761 150 WLDKGAHLIRRLFGL------AQRYRHSGVTRDDFAA--NNARARKAIERFGELPQDILE 201 (216)
T ss_pred HHHHHHHHHHHHHHH------HHhhhcCCCCHHHHHh--CCHHHHHHHHHcCCCCHHHHc
Confidence 455555555555553 5889999999999984 59999999987 5666543
No 5
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=52.24 E-value=13 Score=29.95 Aligned_cols=38 Identities=26% Similarity=0.572 Sum_probs=29.4
Q ss_pred HHhhHHHHHHHHHhHHHhhhhhh------hcccccccCCCCCChHHHHHHhc
Q 033672 8 LLDPKKNWLAAQHMKTISKRLRN------FGLRYDDLYDPYYDLDIKEALDR 53 (114)
Q Consensus 8 ~~~pi~~~ya~~y~~~v~~gyrk------~GL~yDDLl~eee~~~V~eALrR 53 (114)
-++.+..||.. +.|+|| .|-+||+++.- .|+.||-+.|
T Consensus 107 TLnSi~~WY~Q------Ar~~NktAiPilvGTKyD~fi~l--p~e~Q~~I~~ 150 (205)
T KOG1673|consen 107 TLNSIKEWYRQ------ARGLNKTAIPILVGTKYDLFIDL--PPELQETISR 150 (205)
T ss_pred HHHHHHHHHHH------HhccCCccceEEeccchHhhhcC--CHHHHHHHHH
Confidence 45667788876 588887 58999999964 6888887765
No 6
>PRK07122 RNA polymerase sigma factor SigF; Reviewed
Probab=42.72 E-value=22 Score=28.17 Aligned_cols=61 Identities=20% Similarity=0.288 Sum_probs=45.8
Q ss_pred HHhhhhhhhcccccccCCCCCChHHHHHHhcCCHH-----HHHHHHHHHHHHHhcccccCC----CCcccch
Q 033672 23 TISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPRE-----IVDARNQRLKRAMDLSMKHEY----LPEDLQV 85 (114)
Q Consensus 23 ~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~-----~~~~R~~Ri~RA~qlS~~h~~----LPke~q~ 85 (114)
+++..|+..|+-+|||+.+ -+--+-+|+.+..++ ..|+ .++|+.++.-.+.+.- +|.....
T Consensus 55 ~iA~~y~~~g~~~~DLiQe-G~iGLi~AierFDp~~G~~FsTYA-~~~Irg~I~~~lr~~~~~ir~Pr~~~~ 124 (264)
T PRK07122 55 HIARRFDGRGEPRDDLVQV-ARVGLVNAVNRFDVETGSDFVSFA-VPTIMGEVRRHFRDNSWSVKVPRRLKE 124 (264)
T ss_pred HHHHHHHhCCCCHHHHHHH-HHHHHHHHHHHcCCCCCCChHHHH-HHHHHHHHHHHHHHcCCccccCHHHHH
Confidence 3467788889999999987 477789999999886 3444 5688888887776543 6766543
No 7
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=40.61 E-value=33 Score=27.08 Aligned_cols=47 Identities=19% Similarity=0.343 Sum_probs=32.8
Q ss_pred HHHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcC---CHHH
Q 033672 4 LLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRL---PREI 58 (114)
Q Consensus 4 ~L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRL---P~~~ 58 (114)
||......+..-|.- ..+|+-.|+..+|+.. .|+..++|+.++ |+++
T Consensus 152 ~l~~~~~~iR~v~~~------~~~yr~~gvtR~D~~~--~n~~~~~A~~~~G~~p~dv 201 (217)
T PF08900_consen 152 WLRRGGRAIRRVFGL------AQRYRHSGVTRDDFAA--NNARAQAAIERFGELPPDV 201 (217)
T ss_pred HHHHHHHHHHHHHHH------HHHHhccCCCHHHHHh--cCHHHHHHHHHcCCCCHHH
Confidence 344444555555543 5788999999999994 589999888765 5544
No 8
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=35.86 E-value=43 Score=21.08 Aligned_cols=17 Identities=29% Similarity=0.315 Sum_probs=13.5
Q ss_pred CHHHHHHHHHHHHHHHh
Q 033672 55 PREIVDARNQRLKRAMD 71 (114)
Q Consensus 55 P~~~~~~R~~Ri~RA~q 71 (114)
|+.|.-.|++|++||..
T Consensus 18 ~ESELskr~rrLIRaa~ 34 (44)
T PF08134_consen 18 TESELSKRIRRLIRAAR 34 (44)
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 45577889999999964
No 9
>PRK05901 RNA polymerase sigma factor; Provisional
Probab=32.70 E-value=26 Score=31.34 Aligned_cols=60 Identities=20% Similarity=0.313 Sum_probs=43.7
Q ss_pred hhhhhhhcccccccCCCCCChHHHHHHhcCCHHH----HHHHHHHHHHHHhcccccC----CCCcccch
Q 033672 25 SKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREI----VDARNQRLKRAMDLSMKHE----YLPEDLQV 85 (114)
Q Consensus 25 ~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~----~~~R~~Ri~RA~qlS~~h~----~LPke~q~ 85 (114)
+..|...|+-++||+.| -+--+-+|+.|..++- ..-=.++|+.|+.-.+..+ -+|.....
T Consensus 288 AkrY~~~Gl~~eDLIQE-GnIGLikAvekFDp~rG~rFSTYA~wWIRqaI~raI~d~~r~IRvP~~~~e 355 (509)
T PRK05901 288 AKRYTNRGLSFLDLIQE-GNLGLIKAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVE 355 (509)
T ss_pred HHHHhcCCCCHHHHHHH-HHHHHHHHHHHhCcccCCCchhhhHHHHHHHHHHHHHHcCCceecCHHHHH
Confidence 67888889999999997 5888999999998762 2333677877775554432 37776654
No 10
>TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc.
Probab=30.51 E-value=24 Score=27.08 Aligned_cols=60 Identities=15% Similarity=0.290 Sum_probs=42.0
Q ss_pred hhhhhhhcccccccCCCCCChHHHHHHhcCCHHH----HHHHHHHHHHHHhcccccCC----CCcccch
Q 033672 25 SKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREI----VDARNQRLKRAMDLSMKHEY----LPEDLQV 85 (114)
Q Consensus 25 ~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~----~~~R~~Ri~RA~qlS~~h~~----LPke~q~ 85 (114)
+..|+..|+-.+||+.| -+--+-+|+.+..++- ..-=.++|+.|+.-.+..+. +|.+...
T Consensus 17 a~~~~~~~~~~eDLiQe-G~igL~~A~~~fd~~~g~~FstYA~~~Ir~~I~~~l~~~~~~vrip~~~~~ 84 (238)
T TIGR02393 17 AKKYTNRGLSFLDLIQE-GNIGLMKAVEKFDYRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVE 84 (238)
T ss_pred HHHHhcCCCCHHHHHHH-HHHHHHHHHHHhCCCCCCChHHHhHHHHHHHHHHHHHHcCCcEEeCHHHHH
Confidence 45666679999999987 4777899999997742 22234788888766555443 7766543
No 11
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=30.28 E-value=25 Score=31.44 Aligned_cols=60 Identities=22% Similarity=0.377 Sum_probs=44.8
Q ss_pred HHhhhhhhhcccccccCCCCCChHHHHHHhcCCHH-----HHHHHHHHHHHHHhcccccCC----CCcccc
Q 033672 23 TISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPRE-----IVDARNQRLKRAMDLSMKHEY----LPEDLQ 84 (114)
Q Consensus 23 ~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~-----~~~~R~~Ri~RA~qlS~~h~~----LPke~q 84 (114)
+++..|+..|+-++||+.| -|--+-+|+.+..+. ..|+ .++|+.|+.-++..+- +|.+..
T Consensus 395 ~iA~ky~~~gl~~~DLiQe-G~iGL~~Av~kfd~~~G~~FstYA-~~wIr~aI~~~i~~~~r~irip~~~~ 463 (619)
T PRK05658 395 SIAKKYTNRGLQFLDLIQE-GNIGLMKAVDKFEYRRGYKFSTYA-TWWIRQAITRSIADQARTIRIPVHMI 463 (619)
T ss_pred HHHHHHhhCCCCHHHHHHH-HHHHHHHHHHhcCccCCCchHHHh-HHHHHHHHHHHHHHcCCceecCHHHH
Confidence 3467888889999999987 588899999999775 3444 5678888876665543 676654
No 12
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=28.31 E-value=39 Score=20.19 Aligned_cols=31 Identities=23% Similarity=0.347 Sum_probs=22.9
Q ss_pred HHhhhhhhhcccccccCCCCCChHHHHHHhcC
Q 033672 23 TISKRLRNFGLRYDDLYDPYYDLDIKEALDRL 54 (114)
Q Consensus 23 ~v~~gyrk~GL~yDDLl~eee~~~V~eALrRL 54 (114)
.+.+.+++.|+.|+..-.+ +++..+++++.+
T Consensus 14 ~~~~~L~~~~i~y~~~dv~-~~~~~~~~l~~~ 44 (60)
T PF00462_consen 14 KAKEFLDEKGIPYEEVDVD-EDEEAREELKEL 44 (60)
T ss_dssp HHHHHHHHTTBEEEEEEGG-GSHHHHHHHHHH
T ss_pred HHHHHHHHcCCeeeEcccc-cchhHHHHHHHH
Confidence 3468889999999988776 466777776543
No 13
>PF09803 DUF2346: Uncharacterized conserved protein (DUF2346); InterPro: IPR018625 Members of this family of proteins have no known function.
Probab=26.56 E-value=1.6e+02 Score=20.15 Aligned_cols=37 Identities=32% Similarity=0.585 Sum_probs=29.4
Q ss_pred ccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 033672 35 YDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDL 72 (114)
Q Consensus 35 yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~ql 72 (114)
.+-+..+ +++...+.|.++=++....|..||.++++-
T Consensus 39 ~~~~~pp-e~~~~~~ele~~~~~~~~k~~~rl~~~~e~ 75 (80)
T PF09803_consen 39 KRELYPP-ENEEIREELEEFKEELRKKREERLLREMEE 75 (80)
T ss_pred hcccCCC-CCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445544 678888999999899999999999998764
No 14
>PF12536 DUF3734: Patatin phospholipase ; InterPro: IPR021095 This entry represents bacterial proteins of approximately 110 amino acids in length. These proteins are found in association with PF01734 from PFAM. There are two completely conserved residues (F and G) that may be functionally important. The proteins in this family are frequently annotated as patatin family phospholipases however there is little accompanying literature to confirm this.
Probab=24.23 E-value=76 Score=22.36 Aligned_cols=30 Identities=30% Similarity=0.429 Sum_probs=24.5
Q ss_pred hHHHHHHhcCCHHHHHHHHHHHHHHHhccc
Q 033672 45 LDIKEALDRLPREIVDARNQRLKRAMDLSM 74 (114)
Q Consensus 45 ~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~ 74 (114)
-.+.+.+.+||+++..+...+..+.+.|.-
T Consensus 22 ~~i~~Ll~~lP~~~r~dp~~~~l~~~~~~~ 51 (108)
T PF12536_consen 22 HAIRELLERLPEELRDDPDVRELAELGCGK 51 (108)
T ss_pred HHHHHHHHcCCHHHhCCHHHHHHHHhcCCC
Confidence 467899999999998888888888877643
No 15
>KOG0887 consensus 60S ribosomal protein L35A/L37 [Translation, ribosomal structure and biogenesis]
Probab=24.05 E-value=24 Score=26.14 Aligned_cols=17 Identities=41% Similarity=0.456 Sum_probs=15.7
Q ss_pred hhhhhhhhhhhheeccc
Q 033672 95 TEASIFVIKQIVVVCKD 111 (114)
Q Consensus 95 ~Ea~~~~~~~~~~~~~~ 111 (114)
+||+|.+=|.++.|||.
T Consensus 43 eEa~fYlGkR~~yvYKa 59 (111)
T KOG0887|consen 43 EEASFYLGKRCVYVYKA 59 (111)
T ss_pred hhhheeecCcEEEEEec
Confidence 79999999999999985
No 16
>PF08707 PriCT_2: Primase C terminal 2 (PriCT-2) ; InterPro: IPR014819 This alpha helical domain is found at the C-terminal of primases. ; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=23.12 E-value=53 Score=21.42 Aligned_cols=26 Identities=42% Similarity=0.709 Sum_probs=17.5
Q ss_pred HHHHHHhcCCHHHHHHHH--HHHHHHHh
Q 033672 46 DIKEALDRLPREIVDARN--QRLKRAMD 71 (114)
Q Consensus 46 ~V~eALrRLP~~~~~~R~--~Ri~RA~q 71 (114)
++++||+-||++...+|. .||-.|+.
T Consensus 1 ~~~~~L~~i~~~~~~~y~~W~~vg~Al~ 28 (78)
T PF08707_consen 1 DIREALDHIPPDIADDYDDWIRVGMALK 28 (78)
T ss_pred CHHHHHhcCCcccccCHHHHHHHHHHHH
Confidence 478999999998644444 44444443
No 17
>KOG4104 consensus Ganglioside-induced differentiation associated protein 3 [Signal transduction mechanisms]
Probab=22.07 E-value=40 Score=24.85 Aligned_cols=40 Identities=30% Similarity=0.395 Sum_probs=23.5
Q ss_pred HHHHHHHHHh-HHHhhhhhhhcccccccCCCCCChHHHHHHhcC
Q 033672 12 KKNWLAAQHM-KTISKRLRNFGLRYDDLYDPYYDLDIKEALDRL 54 (114)
Q Consensus 12 i~~~ya~~y~-~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRL 54 (114)
+.+||-|..+ ..+..-+|-+||.+||=.+ =.+.|+-|+.|
T Consensus 55 ~~~wYPnh~~~h~Lmk~LRf~GLfrDeHqd---F~deqkrLkkl 95 (113)
T KOG4104|consen 55 LSKWYPNHPMFHYLMKMLRFHGLFRDEHQD---FRDEQKRLKKL 95 (113)
T ss_pred HHHhccCchHHHHHHHHHHHhhhhhhhHHH---HHHHHHHHHHh
Confidence 3466665444 3345778889999887542 23445555443
No 18
>PF12448 Milton: Kinesin associated protein; InterPro: IPR022154 This domain is found in eukaryotic trafficking kinesin-binding proteins, which have been shown to be involved in the regulation of endosome-to-lysosome trafficking, including endocytic trafficking of EGF-EGFR complexes and GABA-A receptors in mammals []. They are also important for kinesin-mediated axonal transport of mitochondria to nerve terminals in Drosophila [].
Probab=21.98 E-value=60 Score=24.97 Aligned_cols=13 Identities=38% Similarity=0.514 Sum_probs=11.1
Q ss_pred CChHHHHHHhcCC
Q 033672 43 YDLDIKEALDRLP 55 (114)
Q Consensus 43 e~~~V~eALrRLP 55 (114)
.+.+.+.||+||+
T Consensus 78 g~sdL~~Al~rLs 90 (163)
T PF12448_consen 78 GNSDLEAALRRLS 90 (163)
T ss_pred CCchHHHHhCCCC
Confidence 3568999999999
No 19
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=21.95 E-value=30 Score=27.31 Aligned_cols=9 Identities=67% Similarity=1.243 Sum_probs=6.9
Q ss_pred heeccccCC
Q 033672 106 VVVCKDLGI 114 (114)
Q Consensus 106 ~~~~~~~~~ 114 (114)
+-.||||||
T Consensus 116 mRCCKDLGI 124 (171)
T PF06420_consen 116 MRCCKDLGI 124 (171)
T ss_pred HHHHHHcCc
Confidence 456899987
Done!