Query 033672
Match_columns 114
No_of_seqs 101 out of 201
Neff 3.8
Searched_HMMs 29240
Date Mon Mar 25 07:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033672.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033672hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cx5_G Cytochrome B-C1 complex 100.0 5.4E-40 1.8E-44 241.1 9.2 92 2-100 17-112 (126)
2 1pp9_F Ubiquinol-cytochrome C 100.0 2.8E-38 9.5E-43 227.6 8.0 88 5-100 9-100 (110)
3 2klz_A Ataxin-3; UIM, ubiquiti 30.1 15 0.00051 23.0 0.6 34 43-77 6-41 (52)
4 1tty_A Sigma-A, RNA polymerase 29.1 46 0.0016 20.6 2.9 24 43-68 8-31 (87)
5 4dhx_B Enhancer of yellow 2 tr 18.0 1.3E+02 0.0046 20.3 3.7 53 14-71 41-96 (101)
6 1gng_X Frattide, glycogen synt 17.5 30 0.001 20.5 0.2 11 45-55 24-34 (39)
7 3drz_A BTB/POZ domain-containi 17.1 40 0.0014 22.2 0.7 29 78-111 74-102 (107)
8 1q0v_A Hydrophilic protein; ha 16.1 37 0.0013 22.8 0.4 11 66-76 15-25 (81)
9 2h1v_A Ferrochelatase; rossman 15.8 52 0.0018 25.6 1.2 30 79-109 225-255 (310)
10 3c57_A Two component transcrip 14.9 59 0.002 20.5 1.1 16 44-59 18-33 (95)
No 1
>3cx5_G Cytochrome B-C1 complex subunit 7; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.27.1.1 PDB: 1kyo_G* 3cxh_G* 2ibz_F* 1ezv_F* 1kb9_G* 1p84_G*
Probab=100.00 E-value=5.4e-40 Score=241.05 Aligned_cols=92 Identities=27% Similarity=0.394 Sum_probs=87.6
Q ss_pred hHHHHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCc
Q 033672 2 ASLLQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPE 81 (114)
Q Consensus 2 ~~~L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPk 81 (114)
.+||+++++|+++||.| ++|||||||+||||++| ++|+|+|||+|||+++.++|+|||+||+|||++|++||+
T Consensus 17 ~p~l~~~~~p~~~w~~~------~~g~rk~GL~~DDl~~e-~~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPk 89 (126)
T 3cx5_G 17 SPVLSKLCVPVANQFIN------LAGYKKLGLKFDDLIAE-ENPIMQTALRRLPEDESYARAYRIIRAHQTELTHHLLPR 89 (126)
T ss_dssp CHHHHHHHHHHHHHHHH------HHCGGGGTCCGGGGSCC-CSHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHTTCCCCG
T ss_pred hhHHHHHHHHHHHHHHH------HHHHHhccccHHhccCC-CCHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhhccCCH
Confidence 37899999999999987 59999999999999997 699999999999999999999999999999999999999
Q ss_pred ccchhh----hhHHHHHhhhhhh
Q 033672 82 DLQVLV----SFILRKCTEASIF 100 (114)
Q Consensus 82 e~q~k~----pYL~p~i~Ea~~~ 100 (114)
|+||++ |||.|||+|++.-
T Consensus 90 e~wtk~e~d~~YL~p~i~ev~~E 112 (126)
T 3cx5_G 90 NEWIKAQEDVPYLLPYILEAEAA 112 (126)
T ss_dssp GGSCCGGGCCCSSHHHHHHHHHH
T ss_pred HHccCCCcchHHHHHHHHHHHHH
Confidence 999999 9999999999864
No 2
>1pp9_F Ubiquinol-cytochrome C reductase complex 14 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.27.1.1 PDB: 1bgy_F* 1be3_F* 1l0n_F* 1ntk_F* 1ntm_F* 1ntz_F* 1nu1_F* 1l0l_F* 1ppj_F* 1sqb_F* 1sqq_F* 1sqv_F* 1sqx_F* 2a06_F* 2fyu_F* 2ybb_F* 1sqp_F* 1qcr_F* 1bcc_F* 2bcc_F* ...
Probab=100.00 E-value=2.8e-38 Score=227.63 Aligned_cols=88 Identities=31% Similarity=0.467 Sum_probs=81.1
Q ss_pred HHHHHhhHHHHHHHHHhHHHhhhhhhhcccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHhcccccCCCCcccc
Q 033672 5 LQSLLDPKKNWLAAQHMKTISKRLRNFGLRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMDLSMKHEYLPEDLQ 84 (114)
Q Consensus 5 L~k~~~pi~~~ya~~y~~~v~~gyrk~GL~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~qlS~~h~~LPke~q 84 (114)
-.+++.|+++||.| ++|||||||+||||++| +++|+|||+|||+++.++|+|||+||+|||++|++||+|+|
T Consensus 9 ~~~~~~~~~~w~~n------~sg~rk~GL~~DDl~~e--~~~v~eAL~RLP~~~~~~R~~Ri~RA~~ls~~~~~LPke~w 80 (110)
T 1pp9_F 9 SSRWLEGIRKWYYN------AAGFNKLGLMRDDTIHE--NDDVKEAIRRLPENLYDDRVFRIKRALDLSMRQQILPKEQW 80 (110)
T ss_dssp ---CHHHHHHHHHH------HHCGGGGTCCGGGGSCC--CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTTCCCCGGGS
T ss_pred HHHHHHHHHHHHHH------HHHHHHhcccHHhccCC--CHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcccCCHHHc
Confidence 35788999999998 79999999999999986 68999999999999999999999999999999999999999
Q ss_pred hhh----hhHHHHHhhhhhh
Q 033672 85 VLV----SFILRKCTEASIF 100 (114)
Q Consensus 85 ~k~----pYL~p~i~Ea~~~ 100 (114)
|++ |||.|||+|++.-
T Consensus 81 tk~e~d~~YL~p~i~ev~~E 100 (110)
T 1pp9_F 81 TKYEEDKSYLEPYLKEVIRE 100 (110)
T ss_dssp CCGGGCCCSSHHHHHHHHHH
T ss_pred cCCccchHHHHHHHHHHHHH
Confidence 999 9999999999864
No 3
>2klz_A Ataxin-3; UIM, ubiquitin-binding, hydrolase, neurodegenerati nucleus, phosphoprotein, spinocerebellar ataxia, transcript transcription regulation; NMR {Homo sapiens}
Probab=30.13 E-value=15 Score=23.03 Aligned_cols=34 Identities=32% Similarity=0.540 Sum_probs=20.4
Q ss_pred CChHHHHHHhcCCHHHH--HHHHHHHHHHHhcccccC
Q 033672 43 YDLDIKEALDRLPREIV--DARNQRLKRAMDLSMKHE 77 (114)
Q Consensus 43 e~~~V~eALrRLP~~~~--~~R~~Ri~RA~qlS~~h~ 77 (114)
++++.|+||. |...+. .+----++||+|||++..
T Consensus 6 DEedlqrALa-lSRQE~dmEDeeadLrrAiqLSmQGs 41 (52)
T 2klz_A 6 DEEDLQRALA-LSRQEIDMEDEEADLRRAIQLSMQGS 41 (52)
T ss_dssp HHHHHHHHHH-HHHHHHCCSSSHHHHHHHHHHHHTTC
T ss_pred chHHHHHHHH-HHHHHhccchhHHHHHHHHHHHhhcc
Confidence 4578888875 222221 111224789999999853
No 4
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=29.10 E-value=46 Score=20.62 Aligned_cols=24 Identities=13% Similarity=0.185 Sum_probs=16.4
Q ss_pred CChHHHHHHhcCCHHHHHHHHHHHHH
Q 033672 43 YDLDIKEALDRLPREIVDARNQRLKR 68 (114)
Q Consensus 43 e~~~V~eALrRLP~~~~~~R~~Ri~R 68 (114)
....+.+||..||+.+. .+++++.
T Consensus 8 ~~~~l~~~l~~L~~~er--~vl~l~~ 31 (87)
T 1tty_A 8 MREELEKVLKTLSPREA--MVLRMRY 31 (87)
T ss_dssp CCSHHHHHHTTSCHHHH--HHHHHHH
T ss_pred HHHHHHHHHHhCCHHHH--HHHHHHH
Confidence 34678999999998754 3444443
No 5
>4dhx_B Enhancer of yellow 2 transcription factor homolog, 80 kDa MCM3-associated protein; mRNA export, transport protein-DNA binding protein complex; 2.10A {Homo sapiens}
Probab=18.01 E-value=1.3e+02 Score=20.28 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=39.1
Q ss_pred HHHHHHHhHHHhhhhhhhc---ccccccCCCCCChHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 033672 14 NWLAAQHMKTISKRLRNFG---LRYDDLYDPYYDLDIKEALDRLPREIVDARNQRLKRAMD 71 (114)
Q Consensus 14 ~~ya~~y~~~v~~gyrk~G---L~yDDLl~eee~~~V~eALrRLP~~~~~~R~~Ri~RA~q 71 (114)
||+-...+-+ .+..++-| +-+|||+. .+.-+|-.-.|+.+..+=..||+-.++
T Consensus 41 GW~Devr~~~-r~~i~~~g~~~vt~~~L~~----~I~P~Ar~~VP~~VK~Ell~rIr~fL~ 96 (101)
T 4dhx_B 41 GWKDQLKAHC-KEVIKEKGLEHVTVDDLVA----EITPKGRALVPDSVKKELLQRIRTFLA 96 (101)
T ss_dssp THHHHHHHHH-HHHHHHHCTTTCCHHHHHH----HHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHH-HHHHHHcCCCCCCHHHHHH----HHhHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 5665543333 45566665 78999984 478899999999999999999987763
No 6
>1gng_X Frattide, glycogen synthase kinase-3 beta; transferase, protein kinase, GSK3/frattide complex, phosphorylated, active; HET: PTR; 2.6A {Homo sapiens}
Probab=17.45 E-value=30 Score=20.47 Aligned_cols=11 Identities=55% Similarity=0.465 Sum_probs=8.8
Q ss_pred hHHHHHHhcCC
Q 033672 45 LDIKEALDRLP 55 (114)
Q Consensus 45 ~~V~eALrRLP 55 (114)
--++||++||-
T Consensus 24 ~LIkEAVrRlq 34 (39)
T 1gng_X 24 NLIKEAVRRLH 34 (39)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 46899999974
No 7
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=17.08 E-value=40 Score=22.23 Aligned_cols=29 Identities=24% Similarity=0.335 Sum_probs=21.6
Q ss_pred CCCcccchhhhhHHHHHhhhhhhhhhhhheeccc
Q 033672 78 YLPEDLQVLVSFILRKCTEASIFVIKQIVVVCKD 111 (114)
Q Consensus 78 ~LPke~q~k~pYL~p~i~Ea~~~~~~~~~~~~~~ 111 (114)
.+|++.. ...+.+||+||-|...+-.|++
T Consensus 74 ~~p~~~~-----~~~l~~Ea~fy~l~~L~~~l~~ 102 (107)
T 3drz_A 74 VINKDLA-----EEGVLEEAEFYNITSLIKLVKD 102 (107)
T ss_dssp CCCTTSC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCCC-----HHHHHHHHHHCCCHHHHHHHHH
Confidence 4566542 2567899999999998887775
No 8
>1q0v_A Hydrophilic protein; has cysteine rich putative zinc finger esential for function;...; stable, non-interacting alpha-helices; NMR {Saccharomyces cerevisiae} SCOP: j.105.1.1 PDB: 1q0w_A
Probab=16.13 E-value=37 Score=22.79 Aligned_cols=11 Identities=36% Similarity=0.860 Sum_probs=9.4
Q ss_pred HHHHHhccccc
Q 033672 66 LKRAMDLSMKH 76 (114)
Q Consensus 66 i~RA~qlS~~h 76 (114)
|+||++||++-
T Consensus 15 LkrAieLSL~E 25 (81)
T 1q0v_A 15 IRKAIELSLKE 25 (81)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHhHHH
Confidence 78999999864
No 9
>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 3goq_A 1doz_A 2q2n_A* 3m4z_A 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A
Probab=15.80 E-value=52 Score=25.57 Aligned_cols=30 Identities=10% Similarity=-0.181 Sum_probs=22.5
Q ss_pred CCcccchhhhhHHHHHhhhhhh-hhhhhheec
Q 033672 79 LPEDLQVLVSFILRKCTEASIF-VIKQIVVVC 109 (114)
Q Consensus 79 LPke~q~k~pYL~p~i~Ea~~~-~~~~~~~~~ 109 (114)
.+..+|+ .||+.+.+++..=- =+|.|+|+|
T Consensus 225 ~g~~~Wl-~P~~~~~l~~l~~~~G~k~v~V~P 255 (310)
T 2h1v_A 225 NTPDPWL-GPDVQDLTRDLFEQKGYQAFVYVP 255 (310)
T ss_dssp CCSSCBS-SCBHHHHHHHHHHHHCCSEEEEEC
T ss_pred CCCCCcC-CCCHHHHHHHHHHHcCCceEEEEC
Confidence 6777777 47888888777555 568888887
No 10
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=14.87 E-value=59 Score=20.54 Aligned_cols=16 Identities=13% Similarity=0.204 Sum_probs=4.6
Q ss_pred ChHHHHHHhcCCHHHH
Q 033672 44 DLDIKEALDRLPREIV 59 (114)
Q Consensus 44 ~~~V~eALrRLP~~~~ 59 (114)
...+.+++..||+.+.
T Consensus 18 ~~~l~~~l~~Lt~~e~ 33 (95)
T 3c57_A 18 GSHMQDPLSGLTDQER 33 (95)
T ss_dssp ---------CCCHHHH
T ss_pred HHHHHHHHhcCCHHHH
Confidence 4566677777777654
Done!