BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033673
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DIQ|A Chain A, Solution Structure Of The Tudor Domain Of Tudor And Kh
Domain Containing Protein
Length = 110
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 40 LINEINQNHESKVPDNLTRNVG 61
L+NE+ Q++E+ VP++LT +VG
Sbjct: 15 LVNEMTQHYENSVPEDLTVHVG 36
>pdb|3FDR|A Chain A, Crystal Structure Of Tdrd2
Length = 94
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 19/22 (86%)
Query: 40 LINEINQNHESKVPDNLTRNVG 61
L+NE+ Q++E+ VP++LT +VG
Sbjct: 10 LVNEMTQHYENSVPEDLTVHVG 31
>pdb|2EEE|A Chain A, Solution Structure Of The A1pp Domain From Human Protein
C6orf130
Length = 149
Score = 28.1 bits (61), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 1 MEGDIFSSA---------GNDAQVDDKILQIFQKSFGQVQDILDQNR 38
++GD+F+ D ++ I +F+K FG VQ++L+Q +
Sbjct: 14 VKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQK 60
>pdb|2L8R|A Chain A, Solution Structure Of Human Protein C6orf130 In Complex
With Adp- Ribose
Length = 151
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 1 MEGDIFSSA---------GNDAQVDDKILQIFQKSFGQVQDILDQNR 38
++GD+F+ D ++ I +F+K FG VQ++L+Q +
Sbjct: 16 VKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQK 62
>pdb|2LGR|A Chain A, Solution Structure Of Human Protein C6orf130, A Putative
Macro Domain
Length = 160
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 9/47 (19%)
Query: 1 MEGDIFSSA---------GNDAQVDDKILQIFQKSFGQVQDILDQNR 38
++GD+F+ D ++ I +F+K FG VQ++L+Q +
Sbjct: 25 VKGDLFACPKTDSLAHCISEDCRMGAGIAVLFKKKFGGVQELLNQQK 71
>pdb|2KM4|A Chain A, Solution Structure Of Rtt103 Ctd Interacting Domain
pdb|2L0I|A Chain A, Solution Structure Of Rtt103 Ctd-Interacting Domain Bound
To A Ser2 Phosphorylated Ctd Peptide
Length = 142
Score = 26.2 bits (56), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 18 KILQIFQKSFGQVQDILDQNRLLINEINQNHESKVPDNLTRNVGLIKELNNNITRVVN 75
KI+Q FQ SFG+V ++ INQ + L+R V ++KE N +VVN
Sbjct: 75 KIIQ-FQDSFGKVAA------EVLGRINQEFPRDLKKKLSRVVNILKERNIFSKQVVN 125
>pdb|1VLP|A Chain A, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|B Chain B, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|C Chain C, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|D Chain D, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
Length = 441
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 43 EINQNHESKVPDNLTRNVG 61
E+N NH K+ DNL +N G
Sbjct: 394 EVNGNHAIKISDNLGKNXG 412
>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With
Ind E804
Length = 324
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 34 LDQNRLLINEINQNHESKVPDNLTRNVGLIKELNN 68
L N + + EI HE P R V L+K+L +
Sbjct: 25 LTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKH 59
>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|F Chain F, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|I Chain I, Structure Of The Haptoglobin-Haemoglobin Complex
pdb|4F4O|L Chain L, Structure Of The Haptoglobin-Haemoglobin Complex
Length = 347
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 18 KILQIFQKSFGQVQDILDQNRLLINEINQNHESKV---PDNLTRNVGLIK 64
K L++ K+ + +DI RL + + + KV PDN T ++GLIK
Sbjct: 143 KNLRLGHKNDTKAKDIAPTLRLYVGKKQEVEIEKVIFHPDNSTVDIGLIK 192
>pdb|3ETU|A Chain A, Crystal Structure Of Yeast Dsl1p
Length = 365
Score = 25.4 bits (54), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 8/51 (15%)
Query: 32 DILDQNRLLINEINQNHESKVPDNLTRNVGLIKEL--NNNITRVVNLYADL 80
D+L + +L NE+N + DNL + LIKE+ N NI + N Y L
Sbjct: 44 DLLQREAILANELN------ILDNLKTFLNLIKEVKTNLNILELENCYYSL 88
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 25.4 bits (54), Expect = 8.4, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 20 LQIFQKSFGQVQDILDQNRLLINEINQNHESKVP------DNLTRNVGLIKELNNNITRV 73
+ + K F + Q+ + N++N P D LT +V I+E+ +N+T V
Sbjct: 211 MGVLTKPFAEEQEKYYIQTAMWNDLNPQQIIGTPTIVKEMDCLTASVSEIEEVRSNVTSV 270
Query: 74 VNL 76
+N+
Sbjct: 271 INM 273
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,605,542
Number of Sequences: 62578
Number of extensions: 84355
Number of successful extensions: 222
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 212
Number of HSP's gapped (non-prelim): 19
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)