BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 033675
         (114 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4AAH|A Chain A, Methanol Dehydrogenase From Methylophilus W3a1
 pdb|4AAH|C Chain C, Methanol Dehydrogenase From Methylophilus W3a1
 pdb|2AD6|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C)
 pdb|2AD6|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C)
 pdb|2AD7|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C) In The Presence Of Methanol
 pdb|2AD7|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C) In The Presence Of Methanol
 pdb|2AD8|A Chain A, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C) In The Presence Of Ethanol
 pdb|2AD8|C Chain C, Crystal Structure Of Methanol Dehydrogenase From M. W3a1
           (Form C) In The Presence Of Ethanol
          Length = 571

 Score = 28.9 bits (63), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 30  GDLALVATLNGTVHLVDTKRGESRWSFSM-----GKPIYSSF 66
           G L   ATL+G +  +D K G+  W+F M     G P+  SF
Sbjct: 475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF 516


>pdb|1G72|A Chain A, Catalytic Mechanism Of Quinoprotein Methanol
           Dehydrogenase: A Theoretical And X-Ray Crystallographic
           Investigation
 pdb|1G72|C Chain C, Catalytic Mechanism Of Quinoprotein Methanol
           Dehydrogenase: A Theoretical And X-Ray Crystallographic
           Investigation
          Length = 573

 Score = 28.9 bits (63), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 30  GDLALVATLNGTVHLVDTKRGESRWSFSM-----GKPIYSSF 66
           G L   ATL+G +  +D K G+  W+F M     G P+  SF
Sbjct: 477 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF 518


>pdb|3B8M|A Chain A, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8M|B Chain B, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8M|C Chain C, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
          Length = 280

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 10/46 (21%)

Query: 58  MGKPIYSS--FTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTT 101
           + KP+YS+    ++DPDF + +G D        GI +  +I K+ T
Sbjct: 201 IKKPVYSNGQAVKDDPDFSISLGAD--------GIERKLEIEKAVT 238


>pdb|3B8N|A Chain A, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8N|B Chain B, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8N|C Chain C, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8N|D Chain D, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8N|E Chain E, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8N|F Chain F, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8N|G Chain G, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8N|H Chain H, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
 pdb|3B8N|I Chain I, Structure Of Fepe- Bacterial Polysaccharide Co-Polymerase
          Length = 279

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 10/46 (21%)

Query: 58  MGKPIYSS--FTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMKSTT 101
           + KP+YS+    ++DPDF + +G D        GI +  +I K+ T
Sbjct: 200 IKKPVYSNGQAVKDDPDFSISLGAD--------GIERKLEIEKAVT 237


>pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase From
            Desulfovibrio Africanus
 pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-ferredoxin Oxidoreductase From
            Desulfovibrio Africanus
 pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate-Ferredoxin
            Oxidoreductase From Desulfovibrio Africanus And Pyruvate.
 pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate-Ferredoxin
            Oxidoreductase From Desulfovibrio Africanus And Pyruvate.
 pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
            Pyruvate:ferredoxin Oxidoreductase
 pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
            Pyruvate:ferredoxin Oxidoreductase
 pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From
            Desulfovibrio Africanus
 pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From
            Desulfovibrio Africanus
 pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
            Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
            Africanus
 pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
            Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
            Africanus
 pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
            Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
            Africanus
 pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
            Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
            Africanus
 pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From
            Desulfovibrio Africanus, Oxygen Inhibited Form
 pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From
            Desulfovibrio Africanus, Oxygen Inhibited Form
 pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of Pyruvate:ferredoxin
            Oxidoreductase From Desulfovibrio Africanus
 pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of Pyruvate:ferredoxin
            Oxidoreductase From Desulfovibrio Africanus
 pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From
            Desulfovibrio Africanus
 pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From
            Desulfovibrio Africanus
 pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
            Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
            Africanus
 pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
            Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
            Africanus
          Length = 1231

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 87   RKGIGKMKDIMKSTTPNCYFTNFR 110
            RKG+GK +D+M +   + Y+  FR
Sbjct: 1076 RKGMGKSQDVMNTAVKSGYWPLFR 1099


>pdb|2HZ6|A Chain A, The Crystal Structure Of Human Ire1-Alpha Luminal Domain
          Length = 369

 Score = 26.6 bits (57), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)

Query: 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVD 76
          PE+  L  V+TL+G++H V  + G  +W+      +       +P F  D
Sbjct: 8  PET--LLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEPAFLPD 55


>pdb|1NOF|A Chain A, The First Crystallographic Structure Of A Xylanase From
           Glycosyl Hydrolase Family 5: Implications For Catalysis
 pdb|2Y24|A Chain A, Structural Basis For Substrate Recognition By Erwinia
           Chrysanthemi Gh5 Glucuronoxylanase
          Length = 383

 Score = 26.6 bits (57), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 35/68 (51%), Gaps = 12/68 (17%)

Query: 41  TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDV------GEDWKLYFHRKG--IGK 92
           T HL+D     S++  + G P+Y+   +N+PD+  D       G+++K Y   +G   G 
Sbjct: 110 TSHLLDF----SKYMQTNGAPLYAISIQNEPDWKPDYESCEWSGDEFKSYLKSQGSKFGS 165

Query: 93  MKDIMKST 100
           +K I+  +
Sbjct: 166 LKVIVAES 173


>pdb|3F2O|A Chain A, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
          AND SOCS BOX Containing 1 (Spsb1) In Complex With A
          20-Residue Vasa Peptide
 pdb|3F2O|B Chain B, Crystal Structure Of Human SplaRYANODINE RECEPTOR DOMAIN
          AND SOCS BOX Containing 1 (Spsb1) In Complex With A
          20-Residue Vasa Peptide
          Length = 233

 Score = 25.8 bits (55), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 62 IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMK 98
          +  S+  ND    V V ED KL FHR  + +  D ++
Sbjct: 52 LLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIR 88


>pdb|2JK9|A Chain A, The Structure Of  Spla-Ryanodine Receptor Domain And
          Socs Box Containing 1 In Complex With A Par-4 Peptide
          Length = 212

 Score = 25.8 bits (55), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 62 IYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIMK 98
          +  S+  ND    V V ED KL FHR  + +  D ++
Sbjct: 31 LLHSWNNNDRSLNVFVKEDDKLIFHRHPVAQSTDAIR 67


>pdb|1KV9|A Chain A, Structure At 1.9 A Resolution Of A Quinohemoprotein
           Alcohol Dehydrogenase From Pseudomonas Putida Hk5
          Length = 668

 Score = 25.8 bits (55), Expect = 6.8,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 30  GDLALVATLNGTVHLVDTKRGESRWSFSMGKP 61
           GD   V TL+G +  +D K G++ WS     P
Sbjct: 117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDP 148


>pdb|1FLG|A Chain A, Crystal Structure Of The Quinoprotein Ethanol
           Dehydrogenase From Pseudomonas Aeruginosa
 pdb|1FLG|B Chain B, Crystal Structure Of The Quinoprotein Ethanol
           Dehydrogenase From Pseudomonas Aeruginosa
          Length = 582

 Score = 25.4 bits (54), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 29  SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYS 64
           +G+L    T +G     D K G+  W F  G  I S
Sbjct: 496 AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVS 531


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.430 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,183,833
Number of Sequences: 62578
Number of extensions: 127749
Number of successful extensions: 257
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 13
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)