BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033675
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Z2E3|ERN2_MOUSE Serine/threonine-protein kinase/endoribonuclease IRE2 OS=Mus
musculus GN=Ern2 PE=2 SV=2
Length = 911
Score = 36.6 bits (83), Expect = 0.040, Method: Composition-based stats.
Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 5 LIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWS 55
L FLL L +L L P PES L V+TL+G++H ++ + G+ +W+
Sbjct: 14 LGFLLQLVTLLGKLGPQVQSVRPES--LLFVSTLDGSLHALNKQTGDLKWT 62
>sp|A5GR60|DER_SYNR3 GTPase Der OS=Synechococcus sp. (strain RCC307) GN=der PE=3 SV=1
Length = 452
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 10 LLTVILSSLPPTSPRASPESGDLALVATLN-GTVHLVDTKRGESRWSFSMGKPIYSSFTR 68
LL +L LPP +PE +A+V N G L++T GE+R ++ PI + TR
Sbjct: 157 LLDQVLDFLPPQDEEEAPEPIQMAIVGRPNVGKSSLLNTVCGENR---AIVSPIRGT-TR 212
Query: 69 NDPDFYVD-VGEDWKL 83
+ D ++ G+ WKL
Sbjct: 213 DTIDTSIEREGQSWKL 228
>sp|Q6AXN3|TMED5_RAT Transmembrane emp24 domain-containing protein 5 OS=Rattus
norvegicus GN=Tmed5 PE=2 SV=1
Length = 229
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 25 ASPESGDLALVATLNGTVHLVDTKRGESRWSFS------MGKPIYSSFTRNDPDFYVDVG 78
ASPE L + VH V+T+ G+ + F K I+ ++ V+
Sbjct: 77 ASPEGRTLVFEQRKSDGVHTVETEDGDYMFCFDNTFSTISEKVIFFELILDNMGEEVEGQ 136
Query: 79 EDWKLYFHRKGIGKMK--DIMKS 99
EDWK Y + +MK DI++S
Sbjct: 137 EDWKKYITNTDVLEMKLEDILES 159
>sp|P38539|DHM1_METME Methanol dehydrogenase [cytochrome c] subunit 1 OS=Methylophilus
methylotrophus PE=1 SV=2
Length = 573
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 30 GDLALVATLNGTVHLVDTKRGESRWSFSM-----GKPIYSSF 66
G L ATL+G + +D K G+ W+F M G P+ SF
Sbjct: 477 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSF 518
>sp|Q9NIV1|E2AK3_DROME Eukaryotic translation initiation factor 2-alpha kinase
OS=Drosophila melanogaster GN=PEK PE=1 SV=2
Length = 1162
Score = 29.3 bits (64), Expect = 6.9, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 24 RASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGK 60
R P D+ +V TV V+++ G RW+FS+G+
Sbjct: 229 RHDPLLDDVIIVRRQTQTVRAVESRTGVERWNFSVGQ 265
>sp|O66932|PHSG_AQUAE Glycogen phosphorylase OS=Aquifex aeolicus (strain VF5) GN=glgP
PE=3 SV=1
Length = 692
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 22/102 (21%)
Query: 18 LPPTSPRASPESGDLALVATLNGTVHL-------VDTKRGESRWSFSMGKPIYSSFTRND 70
LPP G + A++NG +HL ++ G++ W+F + R D
Sbjct: 574 LPPLEA-----CGTSGMKASMNGVLHLSILDGWWIEGYNGKNGWAFG-DYEVEGDRNRAD 627
Query: 71 PDFYVDVGED--WKLYFHR-------KGIGKMKDIMKSTTPN 103
+ ++ E+ LY+ R K I MK+ +KS TPN
Sbjct: 628 AEAIYNILENEVIPLYYERDERGVPVKWISMMKEAIKSITPN 669
>sp|Q60282|Y3523_METJA Uncharacterized protein MJECL23 OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=MJECL23 PE=4 SV=1
Length = 827
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 10/41 (24%), Positives = 22/41 (53%)
Query: 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRND 70
GD+ ++ ++G V+ +D K G+ W F ++ ++D
Sbjct: 505 GDIVILGCVSGHVYAIDIKTGKKLWEFKAEDTVWGLSIKDD 545
>sp|Q6UIL3|LAHY_LARTR (+)-larreatricin hydroxylase, chloroplastic OS=Larrea tridentata
PE=1 SV=1
Length = 584
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
Query: 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHR 87
ESGD +L T +G +HL WS G P S+F N +FY G D Y H
Sbjct: 308 ESGDGSLEGTPHGNIHL---------WS---GDPRQSNF-ENMGNFY-SAGRDPLFYAHH 353
Query: 88 KGIGKMKDIMKST 100
+ +M I K++
Sbjct: 354 ANVDRMWYIWKNS 366
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,356,767
Number of Sequences: 539616
Number of extensions: 1810172
Number of successful extensions: 4156
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4146
Number of HSP's gapped (non-prelim): 19
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)