Query 033675
Match_columns 114
No_of_seqs 14 out of 16
Neff 2.2
Searched_HMMs 46136
Date Fri Mar 29 05:00:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033675.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033675hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01011 PQQ: PQQ enzyme repea 98.0 7.3E-06 1.6E-10 47.4 3.7 35 31-65 1-35 (38)
2 KOG1027 Serine/threonine prote 97.7 6.1E-05 1.3E-09 70.1 5.2 76 29-106 106-195 (903)
3 PF13360 PQQ_2: PQQ-like domai 97.6 0.00047 1E-08 48.4 7.5 67 29-96 35-101 (238)
4 TIGR03300 assembly_YfgL outer 97.3 0.0022 4.8E-08 49.5 8.5 66 29-95 104-169 (377)
5 smart00564 PQQ beta-propeller 97.3 0.00054 1.2E-08 37.0 3.7 29 29-57 5-33 (33)
6 PRK11138 outer membrane biogen 97.2 0.0013 2.8E-08 51.8 7.0 66 29-95 119-184 (394)
7 TIGR03300 assembly_YfgL outer 96.9 0.0038 8.3E-08 48.2 7.1 65 29-94 64-128 (377)
8 PRK11138 outer membrane biogen 96.8 0.013 2.9E-07 46.2 9.3 64 29-93 68-142 (394)
9 cd00216 PQQ_DH Dehydrogenases 96.2 0.0084 1.8E-07 49.8 4.9 38 28-65 404-441 (488)
10 cd00216 PQQ_DH Dehydrogenases 95.7 0.044 9.6E-07 45.5 7.2 65 31-95 111-189 (488)
11 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.6 0.022 4.8E-07 48.7 4.9 37 29-65 471-507 (527)
12 PF13360 PQQ_2: PQQ-like domai 95.3 0.088 1.9E-06 37.0 6.5 67 27-94 73-145 (238)
13 cd00200 WD40 WD40 domain, foun 94.8 0.64 1.4E-05 30.5 9.0 67 30-96 147-214 (289)
14 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.3 0.16 3.5E-06 43.5 6.7 69 28-96 118-196 (527)
15 COG1520 FOG: WD40-like repeat 94.2 0.35 7.7E-06 38.0 8.1 68 29-97 110-179 (370)
16 cd00200 WD40 WD40 domain, foun 93.1 1.7 3.6E-05 28.6 8.5 66 29-94 188-254 (289)
17 TIGR03074 PQQ_membr_DH membran 93.0 0.42 9.1E-06 43.7 7.5 35 28-62 258-292 (764)
18 TIGR03866 PQQ_ABC_repeats PQQ- 92.8 2.2 4.7E-05 29.9 9.2 59 35-93 48-107 (300)
19 COG1520 FOG: WD40-like repeat 92.4 0.64 1.4E-05 36.6 6.8 67 29-96 152-224 (370)
20 PF13570 PQQ_3: PQQ-like domai 92.2 0.16 3.5E-06 28.9 2.5 29 50-78 1-29 (40)
21 TIGR03074 PQQ_membr_DH membran 90.8 0.86 1.9E-05 41.7 6.9 74 29-103 315-399 (764)
22 KOG4649 PQQ (pyrrolo-quinoline 90.8 0.39 8.6E-06 41.4 4.4 35 30-65 189-223 (354)
23 TIGR03866 PQQ_ABC_repeats PQQ- 88.8 6.3 0.00014 27.6 9.2 61 33-93 4-65 (300)
24 TIGR02801 tolR TolR protein. T 87.5 1.9 4.1E-05 29.8 5.2 29 17-45 35-65 (129)
25 PF13570 PQQ_3: PQQ-like domai 85.5 1.2 2.5E-05 25.3 2.8 22 28-49 19-40 (40)
26 PTZ00421 coronin; Provisional 83.4 20 0.00044 30.8 10.5 64 31-94 139-203 (493)
27 PRK11267 biopolymer transport 82.9 3.7 8.1E-05 29.4 5.1 28 17-44 48-76 (141)
28 TIGR02804 ExbD_2 TonB system t 82.7 4.3 9.4E-05 28.2 5.2 28 17-44 35-64 (121)
29 PF12894 Apc4_WD40: Anaphase-p 82.4 2 4.4E-05 26.5 3.1 28 27-55 20-47 (47)
30 PRK11024 colicin uptake protei 80.1 5.4 0.00012 28.5 5.1 29 17-45 45-76 (141)
31 PLN00181 protein SPA1-RELATED; 78.7 34 0.00073 30.1 10.4 64 30-93 545-610 (793)
32 TIGR02803 ExbD_1 TonB system t 78.3 7.5 0.00016 26.9 5.2 28 17-44 34-62 (122)
33 PF02472 ExbD: Biopolymer tran 75.8 2.3 5E-05 28.5 2.1 28 17-44 39-68 (130)
34 PTZ00420 coronin; Provisional 74.3 29 0.00062 31.0 8.9 59 34-93 142-201 (568)
35 KOG0291 WD40-repeat-containing 73.7 14 0.0003 35.6 7.1 72 29-100 403-477 (893)
36 KOG4649 PQQ (pyrrolo-quinoline 72.2 7 0.00015 34.0 4.5 61 29-89 62-123 (354)
37 COG5212 PDE1 Low-affinity cAMP 71.7 5.1 0.00011 34.8 3.6 46 28-80 182-232 (356)
38 KOG0266 WD40 repeat-containing 70.9 28 0.0006 28.9 7.6 91 18-109 284-386 (456)
39 TIGR02800 propeller_TolB tol-p 70.9 47 0.001 25.7 8.7 56 40-96 214-273 (417)
40 PF00400 WD40: WD domain, G-be 67.2 9.8 0.00021 20.1 3.0 18 29-46 22-39 (39)
41 PRK13684 Ycf48-like protein; P 66.2 27 0.00058 28.0 6.4 16 5-20 11-26 (334)
42 KOG0282 mRNA splicing factor [ 66.2 18 0.00039 32.8 6.0 63 31-93 271-334 (503)
43 KOG0268 Sof1-like rRNA process 64.3 10 0.00022 33.8 4.1 66 26-91 196-261 (433)
44 COG0848 ExbD Biopolymer transp 64.0 20 0.00044 26.3 5.0 30 17-46 46-76 (137)
45 PLN00181 protein SPA1-RELATED; 62.1 73 0.0016 28.1 8.8 62 30-92 588-651 (793)
46 PF04648 MF_alpha: Yeast matin 60.9 3.7 8E-05 20.8 0.5 9 55-63 5-13 (13)
47 PF02239 Cytochrom_D1: Cytochr 60.4 67 0.0014 26.4 7.9 66 27-93 45-112 (369)
48 smart00320 WD40 WD40 repeats. 60.0 14 0.00031 16.5 2.5 17 30-46 24-40 (40)
49 PF02239 Cytochrom_D1: Cytochr 58.9 97 0.0021 25.5 8.6 63 30-93 5-70 (369)
50 KOG1446 Histone H3 (Lys4) meth 56.7 1E+02 0.0022 26.5 8.6 66 27-93 196-266 (311)
51 KOG0279 G protein beta subunit 55.3 17 0.00037 31.3 3.8 32 27-58 72-103 (315)
52 KOG1027 Serine/threonine prote 55.2 15 0.00032 35.5 3.7 56 31-88 28-83 (903)
53 PF11153 DUF2931: Protein of u 54.8 16 0.00035 27.6 3.2 14 1-14 1-14 (216)
54 PF03173 CHB_HEX: Putative car 54.6 6.9 0.00015 29.8 1.2 31 78-113 47-78 (164)
55 cd00201 WW Two conserved trypt 54.1 23 0.00051 18.5 3.0 22 34-55 6-27 (31)
56 PF08450 SGL: SMP-30/Gluconola 53.0 35 0.00075 24.9 4.6 63 32-97 14-76 (246)
57 PRK03629 tolB translocation pr 51.6 1.1E+02 0.0024 25.0 7.8 63 31-94 256-324 (429)
58 KOG1539 WD repeat protein [Gen 51.5 39 0.00084 32.8 5.8 48 27-75 585-632 (910)
59 PRK00178 tolB translocation pr 51.0 1.2E+02 0.0026 24.2 7.7 64 31-95 256-325 (430)
60 COG2247 LytB Putative cell wal 50.3 12 0.00025 32.5 2.0 24 1-24 1-24 (337)
61 KOG0316 Conserved WD40 repeat- 49.5 10 0.00022 32.5 1.6 65 27-93 192-261 (307)
62 PF01436 NHL: NHL repeat; Int 48.7 34 0.00074 18.5 3.1 22 32-53 5-26 (28)
63 PRK04792 tolB translocation pr 48.1 1.6E+02 0.0035 24.4 8.3 71 23-96 223-301 (448)
64 KOG1036 Mitotic spindle checkp 48.0 34 0.00074 29.6 4.5 44 28-71 23-66 (323)
65 smart00108 B_lectin Bulb-type 47.6 83 0.0018 21.0 6.8 26 32-58 56-81 (114)
66 KOG0279 G protein beta subunit 47.5 36 0.00077 29.4 4.5 37 36-73 210-246 (315)
67 smart00456 WW Domain with 2 co 47.1 42 0.00091 17.9 3.3 22 34-55 7-28 (32)
68 PRK12472 hypothetical protein; 46.8 76 0.0016 29.0 6.6 43 19-61 41-84 (508)
69 PRK10903 peptidyl-prolyl cis-t 46.2 39 0.00085 25.7 4.2 42 1-45 2-43 (190)
70 PRK04922 tolB translocation pr 45.3 1.7E+02 0.0036 23.8 7.8 65 31-96 261-331 (433)
71 KOG0295 WD40 repeat-containing 44.8 84 0.0018 28.1 6.4 63 18-80 286-355 (406)
72 KOG0308 Conserved WD40 repeat- 44.4 61 0.0013 30.8 5.8 81 29-111 129-225 (735)
73 KOG2103 Uncharacterized conser 43.7 3.1E+02 0.0067 27.0 10.3 63 32-94 453-531 (910)
74 PF05567 Neisseria_PilC: Neiss 43.6 84 0.0018 25.8 5.9 59 39-103 180-244 (335)
75 PRK02710 plastocyanin; Provisi 41.7 1.1E+02 0.0024 21.2 5.5 86 1-87 2-96 (119)
76 PF04790 Sarcoglycan_1: Sarcog 41.6 30 0.00065 28.2 3.1 38 13-50 223-260 (264)
77 TIGR02276 beta_rpt_yvtn 40-res 40.7 60 0.0013 17.4 5.1 31 30-60 3-34 (42)
78 PF12276 DUF3617: Protein of u 40.7 38 0.00083 23.8 3.1 16 1-16 1-16 (162)
79 TIGR03054 photo_alph_chp1 puta 40.4 1.3E+02 0.0027 22.8 6.0 33 29-61 40-72 (135)
80 PRK13861 type IV secretion sys 40.2 2.1E+02 0.0046 23.5 8.0 34 29-62 41-74 (292)
81 KOG0646 WD40 repeat protein [G 40.1 22 0.00047 32.2 2.2 24 31-54 93-117 (476)
82 KOG0288 WD40 repeat protein Ti 38.3 29 0.00064 31.3 2.7 32 27-58 396-427 (459)
83 PRK12696 flgH flagellar basal 38.2 37 0.0008 27.3 3.1 16 1-16 1-16 (236)
84 PF03032 Brevenin: Brevenin/es 37.7 21 0.00046 22.6 1.3 21 1-21 3-23 (46)
85 TIGR02781 VirB9 P-type conjuga 37.5 2E+02 0.0044 22.6 7.4 35 29-63 37-71 (243)
86 PRK10449 heat-inducible protei 37.4 1.4E+02 0.003 21.5 5.7 14 1-14 1-14 (140)
87 KOG0286 G-protein beta subunit 37.0 1.5E+02 0.0032 26.0 6.7 87 13-106 189-276 (343)
88 PF01453 B_lectin: D-mannose b 36.9 76 0.0017 21.9 4.1 26 30-56 53-78 (114)
89 KOG0270 WD40 repeat-containing 36.9 1.7E+02 0.0036 26.6 7.1 77 29-107 298-391 (463)
90 PRK05137 tolB translocation pr 35.9 2.4E+02 0.0051 22.9 8.6 68 29-96 165-241 (435)
91 PRK05137 tolB translocation pr 35.9 2.4E+02 0.0051 22.9 8.2 63 32-95 304-372 (435)
92 KOG0310 Conserved WD40 repeat- 35.3 1.1E+02 0.0024 27.9 5.8 56 29-84 165-225 (487)
93 KOG0273 Beta-transducin family 34.5 2E+02 0.0043 26.6 7.3 81 29-113 421-507 (524)
94 PF08662 eIF2A: Eukaryotic tra 34.4 1.9E+02 0.0041 21.3 6.5 54 27-82 109-166 (194)
95 PTZ00421 coronin; Provisional 33.8 3.2E+02 0.0068 23.7 10.0 65 29-94 87-161 (493)
96 COG4993 Gcd Glucose dehydrogen 33.7 56 0.0012 31.2 3.9 34 29-62 271-304 (773)
97 PF14269 Arylsulfotran_2: Aryl 33.6 59 0.0013 26.2 3.6 38 29-68 153-191 (299)
98 PF13933 HRXXH: Putative pepti 33.1 30 0.00066 28.7 1.9 16 6-21 1-16 (245)
99 PRK04792 tolB translocation pr 32.5 2.9E+02 0.0064 22.9 7.9 64 31-95 275-344 (448)
100 PF10401 IRF-3: Interferon-reg 31.6 1.1E+02 0.0024 22.5 4.5 33 31-63 74-106 (180)
101 PRK00293 dipZ thiol:disulfide 31.5 2.7E+02 0.006 24.5 7.5 56 1-63 1-62 (571)
102 KOG0296 Angio-associated migra 31.1 1.2E+02 0.0026 27.1 5.2 69 25-94 293-361 (399)
103 TIGR02658 TTQ_MADH_Hv methylam 30.7 3.3E+02 0.0072 23.0 8.0 65 27-92 113-179 (352)
104 KOG0266 WD40 repeat-containing 30.4 3.2E+02 0.007 22.8 8.8 65 28-92 256-321 (456)
105 PF13590 DUF4136: Domain of un 30.4 57 0.0012 22.0 2.6 17 42-58 107-123 (151)
106 PRK10781 rcsF outer membrane l 30.1 71 0.0015 24.2 3.3 13 1-13 1-13 (133)
107 KOG0268 Sof1-like rRNA process 30.1 1.2E+02 0.0026 27.3 5.1 70 32-101 159-232 (433)
108 PRK14864 putative biofilm stre 29.7 73 0.0016 23.0 3.2 11 1-11 5-15 (104)
109 KOG1446 Histone H3 (Lys4) meth 29.4 1E+02 0.0022 26.6 4.4 32 27-58 241-272 (311)
110 PF01453 B_lectin: D-mannose b 29.3 1.2E+02 0.0026 20.9 4.1 30 30-60 19-49 (114)
111 KOG0278 Serine/threonine kinas 28.5 2.7E+02 0.0058 24.4 6.8 65 29-94 154-219 (334)
112 PF00695 vMSA: Major surface a 28.2 19 0.00042 31.5 0.0 16 1-16 222-237 (364)
113 cd04680 Nudix_Hydrolase_21 Mem 27.6 94 0.002 19.8 3.1 29 32-61 4-32 (120)
114 PRK11669 pbpG D-alanyl-D-alani 27.3 1.2E+02 0.0026 25.2 4.4 24 40-63 42-65 (306)
115 PF08525 OapA_N: Opacity-assoc 27.2 63 0.0014 18.5 2.0 19 2-20 11-29 (30)
116 PF06165 Glyco_transf_36: Glyc 26.8 1E+02 0.0022 21.2 3.4 41 41-87 6-46 (110)
117 PRK10949 protease 4; Provision 26.8 87 0.0019 28.3 3.8 23 27-51 52-74 (618)
118 PRK10793 D-alanyl-D-alanine ca 26.8 1.1E+02 0.0024 26.2 4.2 23 41-63 48-70 (403)
119 PF05404 TRAP-delta: Transloco 26.7 3E+02 0.0064 21.6 6.3 31 29-59 55-89 (167)
120 PF07348 Syd: Syd protein (SUK 26.4 99 0.0021 24.1 3.6 25 29-53 125-151 (176)
121 TIGR01672 AphA HAD superfamily 26.0 91 0.002 24.6 3.4 20 29-50 61-80 (237)
122 KOG0275 Conserved WD40 repeat- 25.6 3.4E+02 0.0073 24.7 7.1 65 29-94 404-472 (508)
123 PF06577 DUF1134: Protein of u 25.6 84 0.0018 24.8 3.1 28 28-55 44-74 (160)
124 PRK06132 hypothetical protein; 25.4 2.7E+02 0.0059 23.9 6.3 30 32-61 62-91 (359)
125 PF07569 Hira: TUP1-like enhan 25.2 1.1E+02 0.0023 23.6 3.6 28 29-56 21-48 (219)
126 KOG1963 WD40 repeat protein [G 25.0 1.6E+02 0.0034 28.4 5.2 40 28-67 70-109 (792)
127 PF03164 Mon1: Trafficking pro 24.9 34 0.00073 28.9 0.9 45 57-105 19-75 (415)
128 PRK00714 RNA pyrophosphohydrol 24.9 1.1E+02 0.0024 21.8 3.4 32 31-62 11-42 (156)
129 cd00028 B_lectin Bulb-type man 24.3 2.3E+02 0.005 19.0 6.9 30 30-60 55-84 (116)
130 PRK04968 SecY interacting prot 24.2 1.2E+02 0.0026 23.9 3.8 25 29-53 126-152 (181)
131 PF07790 DUF1628: Protein of u 24.2 2E+02 0.0044 18.4 4.5 11 6-16 10-20 (80)
132 PF02393 US22: US22 like; Int 23.5 2E+02 0.0044 19.1 4.3 25 28-52 79-103 (125)
133 TIGR02052 MerP mercuric transp 23.3 55 0.0012 19.1 1.3 19 7-25 5-23 (92)
134 PRK00059 prsA peptidylprolyl i 23.1 1.2E+02 0.0027 23.8 3.6 14 32-45 35-48 (336)
135 TIGR00164 PS_decarb_rel phosph 23.1 2.7E+02 0.0059 21.0 5.3 21 28-48 31-51 (189)
136 KOG0649 WD40 repeat protein [G 22.9 1.6E+02 0.0035 25.6 4.5 55 23-79 15-80 (325)
137 KOG0277 Peroxisomal targeting 22.9 3.6E+02 0.0079 23.4 6.6 85 29-113 116-205 (311)
138 KOG3358 Uncharacterized secret 22.5 97 0.0021 25.5 3.0 51 40-90 92-144 (211)
139 PF05176 ATP-synt_10: ATP10 pr 22.4 69 0.0015 25.7 2.1 25 31-56 209-233 (252)
140 PF12273 RCR: Chitin synthesis 22.3 46 0.001 23.5 1.0 9 37-45 33-41 (130)
141 PF00397 WW: WW domain; Inter 22.2 1E+02 0.0022 17.0 2.2 17 39-55 13-29 (31)
142 KOG1007 WD repeat protein TSSC 21.8 1.2E+02 0.0026 26.8 3.6 63 29-91 182-247 (370)
143 PF11920 DUF3438: Protein of u 21.8 1.9E+02 0.0041 24.3 4.7 16 29-45 58-73 (288)
144 PF14269 Arylsulfotran_2: Aryl 21.8 96 0.0021 25.0 2.8 58 37-94 93-178 (299)
145 PF01043 SecA_PP_bind: SecA pr 21.4 65 0.0014 23.1 1.6 16 38-53 84-99 (113)
146 PF13036 DUF3897: Protein of u 21.4 86 0.0019 22.8 2.3 27 29-55 134-175 (180)
147 KOG1587 Cytoplasmic dynein int 21.3 1.2E+02 0.0026 27.3 3.6 52 29-80 453-506 (555)
148 KOG2055 WD40 repeat protein [G 21.2 2.3E+02 0.0049 26.2 5.3 64 27-90 312-375 (514)
149 PF14779 BBS1: Ciliary BBSome 21.0 75 0.0016 26.2 2.1 14 32-45 242-255 (257)
150 PF07162 B9-C2: Ciliary basal 20.9 98 0.0021 22.7 2.5 28 73-100 23-50 (168)
151 smart00120 HX Hemopexin-like r 20.5 1.7E+02 0.0036 16.1 3.6 21 37-60 7-27 (45)
152 KOG0286 G-protein beta subunit 20.2 3.9E+02 0.0085 23.5 6.3 51 29-79 66-116 (343)
No 1
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=98.03 E-value=7.3e-06 Score=47.38 Aligned_cols=35 Identities=34% Similarity=0.584 Sum_probs=31.8
Q ss_pred CceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeee
Q 033675 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS 65 (114)
Q Consensus 31 ~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSS 65 (114)
+..++++.||.||.+|..+|++.|+|.++.++.++
T Consensus 1 ~~v~~~~~~g~l~AlD~~TG~~~W~~~~~~~~~~~ 35 (38)
T PF01011_consen 1 GRVYVGTPDGYLYALDAKTGKVLWKFQTGPPVDSS 35 (38)
T ss_dssp TEEEEETTTSEEEEEETTTTSEEEEEESSSGGGSC
T ss_pred CEEEEeCCCCEEEEEECCCCCEEEeeeCCCCCccC
Confidence 35688999999999999999999999999998775
No 2
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=97.67 E-value=6.1e-05 Score=70.10 Aligned_cols=76 Identities=21% Similarity=0.235 Sum_probs=65.7
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC--------------CCCceeeeCCcceEeeeecccccee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN--------------DPDFYVDVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~--------------~~~~fidcgdDW~LY~h~~~~GK~k 94 (114)
+.....+++.++..|+||..+|+.+|.|++.+||+++++++ +-+++++|+|+|..|+.+.+.+||.
T Consensus 106 sdGi~ysg~k~d~~~lvD~~tg~~~~tf~~~~~~~~~v~~grt~ytv~m~d~~~~~~~wn~t~~dy~a~~~~~~~~~~~~ 185 (903)
T KOG1027|consen 106 SDGILYSGSKQDIWYLVDPKTGEIDYTFNTAEPIKQLVYLGRTNYTVTMYDKNVRGKTWNTTFGDYSAQYPSGVRGEKMS 185 (903)
T ss_pred CCCeEEecccccceEEecCCccceeEEEecCCcchhheecccceeEEecccCcccCceeeccccchhccCCCccCCceeE
Confidence 67788899999999999999999999999999999999888 1168999999999999999999996
Q ss_pred eecccCCCceee
Q 033675 95 DIMKSTTPNCYF 106 (114)
Q Consensus 95 l~~~s~~~~~~~ 106 (114)
-..+.. |-|+
T Consensus 186 ~~~~~~--~g~i 195 (903)
T KOG1027|consen 186 HFHSLG--NGYI 195 (903)
T ss_pred EEeecC--CccE
Confidence 555544 4444
No 3
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.58 E-value=0.00047 Score=48.39 Aligned_cols=67 Identities=25% Similarity=0.399 Sum_probs=57.8
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceeee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDI 96 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~ 96 (114)
..+..+|++.+|.||.+|..+|+..|++..++++...-...++..|+-+.|. +||.-+..-|+..-.
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~v~v~~~~~-~l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVDGGRVYVGTSDG-SLYALDAKTGKVLWS 101 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEETTEEEEEETTS-EEEEEETTTSCEEEE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeeccccccccccee-eeEecccCCcceeee
Confidence 6778888999999999999999999999999998877555566778888777 999999999998444
No 4
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.27 E-value=0.0022 Score=49.48 Aligned_cols=66 Identities=21% Similarity=0.253 Sum_probs=52.3
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD 95 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl 95 (114)
..+..+|++.||++|.+|..+|++.|++..+.+++++=...++..|+-+ .|=.||.-+..-|+.+-
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~-~~g~l~a~d~~tG~~~W 169 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRT-NDGRLTALDAATGERLW 169 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEEC-CCCeEEEEEcCCCceee
Confidence 5677889999999999999999999999999988765444344456654 45679999998898743
No 5
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=97.26 E-value=0.00054 Score=37.01 Aligned_cols=29 Identities=31% Similarity=0.601 Sum_probs=25.8
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFS 57 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFS 57 (114)
.++..++++.||.||.+|..+|++.|++.
T Consensus 5 ~~~~v~~~~~~g~l~a~d~~~G~~~W~~~ 33 (33)
T smart00564 5 SDGTVYVGSTDGTLYALDAKTGEILWTYK 33 (33)
T ss_pred ECCEEEEEcCCCEEEEEEcccCcEEEEcC
Confidence 34578999999999999999999999973
No 6
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.23 E-value=0.0013 Score=51.78 Aligned_cols=66 Identities=18% Similarity=0.223 Sum_probs=53.9
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKD 95 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl 95 (114)
..+..+|++.||+||.+|..+|++.|++..+.+++++--+.+...|+-.++. .||..+..-||..-
T Consensus 119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v~~~~g-~l~ald~~tG~~~W 184 (394)
T PRK11138 119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLVHTSNG-MLQALNESDGAVKW 184 (394)
T ss_pred ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEEECCCC-EEEEEEccCCCEee
Confidence 3456788999999999999999999999999998876545455567766665 79999999999843
No 7
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=96.95 E-value=0.0038 Score=48.17 Aligned_cols=65 Identities=17% Similarity=0.281 Sum_probs=50.1
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k 94 (114)
..+..+|++.||.||.+|..+|++.|++..+.++.++-.+.++..|+-+.+. .||.-+..-||.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~~~g-~l~ald~~tG~~~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGTEKG-EVIALDAEDGKEL 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEcCCC-EEEEEECCCCcEe
Confidence 4556789999999999999999999999999988766444444556655544 6777777777763
No 8
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.83 E-value=0.013 Score=46.19 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=42.2
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCC--eee---------eeecCCCCceeeeCCcceEeeeeccccce
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP--IYS---------SFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsP--IYS---------SYqA~~~~~fidcgdDW~LY~h~~~~GK~ 93 (114)
..+.++|++-+|.+|.+|..+|+++|++..+.. +++ +-.+.+...|+-+. +=.||.-+..-||.
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~g~l~ald~~tG~~ 142 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-KGQVYALNAEDGEV 142 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-CCEEEEEECCCCCC
Confidence 345668888999999999999999999987651 111 10111223344332 33688888888887
No 9
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.20 E-value=0.0084 Score=49.76 Aligned_cols=38 Identities=21% Similarity=0.490 Sum_probs=34.8
Q ss_pred CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeee
Q 033675 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS 65 (114)
Q Consensus 28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSS 65 (114)
...++.+|++.||+||.+|..+|+.+|++..++++.++
T Consensus 404 ~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~~~~~a~ 441 (488)
T cd00216 404 TAGNLVFAGAADGYFRAFDATTGKELWKFRTPSGIQAT 441 (488)
T ss_pred ecCCeEEEECCCCeEEEEECCCCceeeEEECCCCceEc
Confidence 36688999999999999999999999999999999865
No 10
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=95.75 E-value=0.044 Score=45.54 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=47.0
Q ss_pred CceEEEeeCCeEEEEeCCCCeeeEEeecCCCe------eeeeecCCCCceee--------eCCcceEeeeeccccceee
Q 033675 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPI------YSSFTRNDPDFYVD--------VGEDWKLYFHRKGIGKMKD 95 (114)
Q Consensus 31 ~taLVatlDGTiYLVd~~s~r~~WSFStGsPI------YSSYqA~~~~~fid--------cgdDW~LY~h~~~~GK~kl 95 (114)
+.++|++.||.||.+|..+|++.|.|..+.++ .++-.+-+.-.|+- |+.+=.+|..+..-||.+=
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 89999999999999999999999999998773 33322223222332 2233378999998888743
No 11
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.56 E-value=0.022 Score=48.65 Aligned_cols=37 Identities=38% Similarity=0.682 Sum_probs=33.2
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS 65 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSS 65 (114)
..++.++++.||.++.+|..+||++|+|..|+++.+|
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~ 507 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGP 507 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCCCceec
Confidence 5678888999999999999999999999999887754
No 12
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=95.32 E-value=0.088 Score=36.98 Aligned_cols=67 Identities=27% Similarity=0.245 Sum_probs=47.0
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEEe-ecCCCee---ee--eecCCCCceeeeCCcceEeeeecccccee
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWSF-SMGKPIY---SS--FTRNDPDFYVDVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSF-StGsPIY---SS--YqA~~~~~fidcgdDW~LY~h~~~~GK~k 94 (114)
....+..+|++.||.||.+|..+|++.|++ .+..|.- ++ ..+ .++.++=+..+=.|+..+..-||..
T Consensus 73 ~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~l~~~d~~tG~~~ 145 (238)
T PF13360_consen 73 VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAV-DGDRLYVGTSSGKLVALDPKTGKLL 145 (238)
T ss_dssp EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEE-ETTEEEEEETCSEEEEEETTTTEEE
T ss_pred eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceE-ecCEEEEEeccCcEEEEecCCCcEE
Confidence 447778899999999999999999999996 4443322 11 111 2344444444888999999999983
No 13
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=94.79 E-value=0.64 Score=30.50 Aligned_cols=67 Identities=16% Similarity=0.200 Sum_probs=49.1
Q ss_pred CCceEEEeeCCeEEEEeCCCCeeeEEeecCC-CeeeeeecCCCCceeeeCCcceEeeeeccccceeee
Q 033675 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDI 96 (114)
Q Consensus 30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGs-PIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~ 96 (114)
....++++.||+|+++|..++++...|.... +|.+-.-.++...++=++.|-++++.+...|+....
T Consensus 147 ~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~ 214 (289)
T cd00200 147 GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT 214 (289)
T ss_pred CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence 4455555569999999999999999988655 666554444444677788899999998887776433
No 14
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.31 E-value=0.16 Score=43.49 Aligned_cols=69 Identities=17% Similarity=0.145 Sum_probs=47.6
Q ss_pred CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe--eeeeecC---CCCceee-----eCCcceEeeeeccccceeee
Q 033675 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI--YSSFTRN---DPDFYVD-----VGEDWKLYFHRKGIGKMKDI 96 (114)
Q Consensus 28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI--YSSYqA~---~~~~fid-----cgdDW~LY~h~~~~GK~kl~ 96 (114)
...+.++|++.||.|+.+|..+||+.|++..+.+- |..-.+| ++.-|+- ++.+=.++..+..-||..=.
T Consensus 118 v~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~ 196 (527)
T TIGR03075 118 LYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWR 196 (527)
T ss_pred EECCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEe
Confidence 35578999999999999999999999999875432 2222222 3333443 22233789999999988443
No 15
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.25 E-value=0.35 Score=38.00 Aligned_cols=68 Identities=28% Similarity=0.427 Sum_probs=51.1
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCC-Ceeee-eecCCCCceeeeCCcceEeeeeccccceeeec
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSS-FTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIM 97 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGs-PIYSS-YqA~~~~~fidcgdDW~LY~h~~~~GK~kl~~ 97 (114)
.....+|++.||.+|..|..+|+..|++..+. |.+.+ ....+...|+.. +|=.+|.=++.-|+.+-..
T Consensus 110 ~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~ 179 (370)
T COG1520 110 SDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYASPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTY 179 (370)
T ss_pred eCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEecCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEE
Confidence 46779999999999999999999999999999 44432 222244557766 6667888888888875443
No 16
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=93.05 E-value=1.7 Score=28.55 Aligned_cols=66 Identities=18% Similarity=0.182 Sum_probs=49.2
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEe-ecCCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSF-SMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSF-StGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k 94 (114)
.....++++-||.|++++..++++.-.+ ....++.+..-.+++..++-+++|=++++.+..-|+..
T Consensus 188 ~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~ 254 (289)
T cd00200 188 DGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV 254 (289)
T ss_pred CcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeE
Confidence 3346777778999999999999999888 55667777644445556666666888888887766653
No 17
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.04 E-value=0.42 Score=43.65 Aligned_cols=35 Identities=11% Similarity=0.202 Sum_probs=30.5
Q ss_pred CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe
Q 033675 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI 62 (114)
Q Consensus 28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI 62 (114)
...+..++++.||.||.+|..+|++.|+|.+++.+
T Consensus 258 ~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~v 292 (764)
T TIGR03074 258 DCARRIILPTSDARLIALDADTGKLCEDFGNNGTV 292 (764)
T ss_pred ccCCEEEEecCCCeEEEEECCCCCEEEEecCCCce
Confidence 35668899999999999999999999999886544
No 18
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.77 E-value=2.2 Score=29.86 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=41.1
Q ss_pred EEeeCCeEEEEeCCCCeeeEEeecCCCee-eeeecCCCCceeeeCCcceEeeeeccccce
Q 033675 35 VATLNGTVHLVDTKRGESRWSFSMGKPIY-SSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 35 VatlDGTiYLVd~~s~r~~WSFStGsPIY-SSYqA~~~~~fidcgdDW~LY~h~~~~GK~ 93 (114)
+++.||+|++++..+++....+..+.... -.+....+..|+-|++|-+++.-+..-++.
T Consensus 48 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~ 107 (300)
T TIGR03866 48 CASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANEDDNLVTVIDIETRKV 107 (300)
T ss_pred EECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE
Confidence 34578999999999999988877654332 222211234578888888999888776654
No 19
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=92.35 E-value=0.64 Score=36.59 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=49.6
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCC----eeeeeecCCCCceeeeCCcc--eEeeeeccccceeee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP----IYSSFTRNDPDFYVDVGEDW--KLYFHRKGIGKMKDI 96 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsP----IYSSYqA~~~~~fidcgdDW--~LY~h~~~~GK~kl~ 96 (114)
...++++.+.||.+|.++.++|+..|.+....| ++++-.+.+..-|+.+.+ | +||..+..=|..+-.
T Consensus 152 ~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~-~~~~~~a~~~~~G~~~w~ 224 (370)
T COG1520 152 GDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG-YDGILYALNAEDGTLKWS 224 (370)
T ss_pred cCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC-CcceEEEEEccCCcEeee
Confidence 566778888899999999999999999887654 222222223445787775 4 999999988887444
No 20
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=92.23 E-value=0.16 Score=28.90 Aligned_cols=29 Identities=38% Similarity=0.716 Sum_probs=15.3
Q ss_pred CeeeEEeecCCCeeeeeecCCCCceeeeC
Q 033675 50 GESRWSFSMGKPIYSSFTRNDPDFYVDVG 78 (114)
Q Consensus 50 ~r~~WSFStGsPIYSSYqA~~~~~fidcg 78 (114)
|+++|++..+++++++-.+-+...|+-..
T Consensus 1 G~~~W~~~~~~~~~~~~~v~~g~vyv~~~ 29 (40)
T PF13570_consen 1 GKVLWSYDTGGPIWSSPAVAGGRVYVGTG 29 (40)
T ss_dssp S-EEEEEE-SS---S--EECTSEEEEE-T
T ss_pred CceeEEEECCCCcCcCCEEECCEEEEEcC
Confidence 78999999999999886555544455554
No 21
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=90.83 E-value=0.86 Score=41.68 Aligned_cols=74 Identities=18% Similarity=0.377 Sum_probs=55.3
Q ss_pred CCCceEEEee----------CCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCcee-eeCCcceEeeeeccccceeeec
Q 033675 29 SGDLALVATL----------NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYV-DVGEDWKLYFHRKGIGKMKDIM 97 (114)
Q Consensus 29 ~~~taLVatl----------DGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fi-dcgdDW~LY~h~~~~GK~kl~~ 97 (114)
-.++++|++. +|.|+..|..+||..|.|.+|.|.-..-- .+.+-|. ..+.-|....=|+.-|-.-..+
T Consensus 315 ~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g~p~~~~~~-~~g~~~~~gg~n~W~~~s~D~~~glvy~pt 393 (764)
T TIGR03074 315 AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPGNPDPTAPP-APGETYTRNTPNSWSVASYDEKLGLVYLPM 393 (764)
T ss_pred ECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecCCCCcccCC-CCCCEeccCCCCccCceEEcCCCCeEEEeC
Confidence 5678888853 79999999999999999999988765321 1333343 6677888888888888777777
Q ss_pred ccCCCc
Q 033675 98 KSTTPN 103 (114)
Q Consensus 98 ~s~~~~ 103 (114)
...+|.
T Consensus 394 Gn~~pd 399 (764)
T TIGR03074 394 GNQTPD 399 (764)
T ss_pred CCcccc
Confidence 666664
No 22
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=90.76 E-value=0.39 Score=41.41 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=30.6
Q ss_pred CCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeee
Q 033675 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSS 65 (114)
Q Consensus 30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSS 65 (114)
.....++++||.+--.+ .+||..|.|++++||+++
T Consensus 189 ~~sv~i~~VdG~l~~f~-~sG~qvwr~~t~GpIf~~ 223 (354)
T KOG4649|consen 189 GSSVIITTVDGVLTSFD-ESGRQVWRPATKGPIFME 223 (354)
T ss_pred cceEEEEEeccEEEEEc-CCCcEEEeecCCCceecc
Confidence 34567788999999998 899999999999999965
No 23
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=88.83 E-value=6.3 Score=27.57 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=40.2
Q ss_pred eEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCC-ceeeeCCcceEeeeeccccce
Q 033675 33 ALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 33 aLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~-~fidcgdDW~LY~h~~~~GK~ 93 (114)
...++.||+|+++|..++++...|..+....+..-.++.. .|+-+++|=.++..+..-|+.
T Consensus 4 ~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~ 65 (300)
T TIGR03866 4 YVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV 65 (300)
T ss_pred EEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcE
Confidence 3456779999999999999999988654333222222333 466666666677777666655
No 24
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=87.47 E-value=1.9 Score=29.82 Aligned_cols=29 Identities=17% Similarity=0.363 Sum_probs=18.4
Q ss_pred cCCCCCCCCC--CCCCCceEEEeeCCeEEEE
Q 033675 17 SLPPTSPRAS--PESGDLALVATLNGTVHLV 45 (114)
Q Consensus 17 s~p~~s~~~~--~~~~~taLVatlDGTiYLV 45 (114)
.+|..++... ..+....+.-+-||++|+-
T Consensus 35 ~lP~~~~~~~~~~~~~~~~i~i~~~g~~~~~ 65 (129)
T TIGR02801 35 DLPKSSAKPLQSKDKKPITVSVDADGKIYLN 65 (129)
T ss_pred eCCCCCCCCCCCCCCCCEEEEEeCCCcEEEc
Confidence 5666555432 2235667777889999873
No 25
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=85.46 E-value=1.2 Score=25.26 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.5
Q ss_pred CCCCceEEEeeCCeEEEEeCCC
Q 033675 28 ESGDLALVATLNGTVHLVDTKR 49 (114)
Q Consensus 28 ~~~~taLVatlDGTiYLVd~~s 49 (114)
...+.++|++.||+||.+|..+
T Consensus 19 v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 19 VAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp ECTSEEEEE-TTSEEEEEETT-
T ss_pred EECCEEEEEcCCCEEEEEeCCC
Confidence 3778999999999999998764
No 26
>PTZ00421 coronin; Provisional
Probab=83.39 E-value=20 Score=30.83 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=48.8
Q ss_pred CceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675 31 DLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 31 ~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k 94 (114)
+..+.|+.||+|.++|..+++..=.+.. ..+|++--=.++...++-++.|-.+...|.+-|+..
T Consensus 139 ~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v 203 (493)
T PTZ00421 139 NVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV 203 (493)
T ss_pred CEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE
Confidence 4666789999999999999998877753 445665422234456888999999999999888763
No 27
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=82.92 E-value=3.7 Score=29.38 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=15.0
Q ss_pred cCCCCCCCCCC-CCCCceEEEeeCCeEEE
Q 033675 17 SLPPTSPRASP-ESGDLALVATLNGTVHL 44 (114)
Q Consensus 17 s~p~~s~~~~~-~~~~taLVatlDGTiYL 44 (114)
.+|..+.+... ++....+..+-||++|+
T Consensus 48 ~LP~a~~~~~~~~~~~~~i~I~~~g~i~~ 76 (141)
T PRK11267 48 NLPASTSTPQPRPEKPVYLSVKADNSMFI 76 (141)
T ss_pred cCCCCCCCCCCCCCCCEEEEEeCCCCEEE
Confidence 46655443322 22334444557888888
No 28
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=82.73 E-value=4.3 Score=28.17 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=15.9
Q ss_pred cCCCCCCCCCC--CCCCceEEEeeCCeEEE
Q 033675 17 SLPPTSPRASP--ESGDLALVATLNGTVHL 44 (114)
Q Consensus 17 s~p~~s~~~~~--~~~~taLVatlDGTiYL 44 (114)
.+|..++.... .+....+..+-||++|+
T Consensus 35 ~lP~a~~~~~~~~~~~~~~v~i~~~g~~~~ 64 (121)
T TIGR02804 35 NLPKASTAVAFKSDELKLLITITADNQLYF 64 (121)
T ss_pred cCCCCCCCCCCCCCCCcEEEEEECCCCEEE
Confidence 45655443322 22345556677889887
No 29
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=82.40 E-value=2 Score=26.53 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=24.3
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEE
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWS 55 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WS 55 (114)
+|+-++.-+|+-||.|++... +++.+|+
T Consensus 20 ~P~mdLiA~~t~~g~v~v~Rl-~~qriw~ 47 (47)
T PF12894_consen 20 CPTMDLIALGTEDGEVLVYRL-NWQRIWS 47 (47)
T ss_pred CCCCCEEEEEECCCeEEEEEC-CCcCccC
Confidence 678899999999999999998 7777785
No 30
>PRK11024 colicin uptake protein TolR; Provisional
Probab=80.05 E-value=5.4 Score=28.46 Aligned_cols=29 Identities=14% Similarity=0.226 Sum_probs=15.8
Q ss_pred cCCCCCCCCCC---CCCCceEEEeeCCeEEEE
Q 033675 17 SLPPTSPRASP---ESGDLALVATLNGTVHLV 45 (114)
Q Consensus 17 s~p~~s~~~~~---~~~~taLVatlDGTiYLV 45 (114)
.+|..+.+... .+....+-.+-||++|+.
T Consensus 45 ~LP~~~~~~~~~~~~~~~i~i~i~~~g~~~~~ 76 (141)
T PRK11024 45 DLPDATESQAVSSNDNPPVIVEVSGVGQYTVV 76 (141)
T ss_pred eCCCCCCCCCCCCCCCCCEEEEEeCCCcEEEe
Confidence 56766543221 233444555667888873
No 31
>PLN00181 protein SPA1-RELATED; Provisional
Probab=78.67 E-value=34 Score=30.11 Aligned_cols=64 Identities=16% Similarity=0.177 Sum_probs=47.8
Q ss_pred CCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecC-CCCceeeeCCcceEeeeeccccce
Q 033675 30 GDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 30 ~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~ 93 (114)
....+.++.||+|.+||..+++....+.. ..+|++---.+ +...++-+++|=.+.+.+..-|+.
T Consensus 545 ~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~ 610 (793)
T PLN00181 545 KSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS 610 (793)
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE
Confidence 35667788999999999999999988853 45677653333 446788999998888777766654
No 32
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=78.29 E-value=7.5 Score=26.87 Aligned_cols=28 Identities=11% Similarity=0.290 Sum_probs=15.6
Q ss_pred cCCCCCCCCCCC-CCCceEEEeeCCeEEE
Q 033675 17 SLPPTSPRASPE-SGDLALVATLNGTVHL 44 (114)
Q Consensus 17 s~p~~s~~~~~~-~~~taLVatlDGTiYL 44 (114)
.+|..++..++. +....+.-+-||++|+
T Consensus 34 ~lP~~~~~~~~~~~~~~~i~I~~~g~~~~ 62 (122)
T TIGR02803 34 DLPASTAAPQPRPEKPVYVSVKADLSLFV 62 (122)
T ss_pred cCCCCCCCCCCCCCCCEEEEEeCCCCEEE
Confidence 466644433322 2344555567899888
No 33
>PF02472 ExbD: Biopolymer transport protein ExbD/TolR; InterPro: IPR003400 This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria []. The family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2JWL_A 2JWK_A 2PFU_A.
Probab=75.83 E-value=2.3 Score=28.48 Aligned_cols=28 Identities=25% Similarity=0.489 Sum_probs=10.9
Q ss_pred cCCCCCCCC--CCCCCCceEEEeeCCeEEE
Q 033675 17 SLPPTSPRA--SPESGDLALVATLNGTVHL 44 (114)
Q Consensus 17 s~p~~s~~~--~~~~~~taLVatlDGTiYL 44 (114)
.+|..+... ...++.+.+..+-||++|+
T Consensus 39 ~lP~~~~~~~~~~~~~~~~i~i~~~g~i~~ 68 (130)
T PF02472_consen 39 DLPSSSSSQKSDEEKDPLTISIDADGSIFL 68 (130)
T ss_dssp -----------------SEEEEETTCEEEE
T ss_pred cCCcccccccccCCCceEEEEECCCCcEEE
Confidence 566666555 4557778888888999884
No 34
>PTZ00420 coronin; Provisional
Probab=74.25 E-value=29 Score=30.99 Aligned_cols=59 Identities=10% Similarity=0.103 Sum_probs=41.8
Q ss_pred EEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCCceeeeCCcceEeeeeccccce
Q 033675 34 LVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 34 LVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~GK~ 93 (114)
+.|+.||+|.++|..+++..+++..+.+|++- +.+ +...++-.+.|=.+...+.+-|+.
T Consensus 142 aSgS~DgtIrIWDl~tg~~~~~i~~~~~V~Sl-swspdG~lLat~s~D~~IrIwD~Rsg~~ 201 (568)
T PTZ00420 142 CSSGFDSFVNIWDIENEKRAFQINMPKKLSSL-KWNIKGNLLSGTCVGKHMHIIDPRKQEI 201 (568)
T ss_pred EEEeCCCeEEEEECCCCcEEEEEecCCcEEEE-EECCCCCEEEEEecCCEEEEEECCCCcE
Confidence 35789999999999999999999877777654 444 334444444565666667666655
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=73.69 E-value=14 Score=35.60 Aligned_cols=72 Identities=25% Similarity=0.386 Sum_probs=59.3
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeee---CCcceEeeeeccccceeeecccC
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDV---GEDWKLYFHRKGIGKMKDIMKST 100 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidc---gdDW~LY~h~~~~GK~kl~~~s~ 100 (114)
.+...|-++|||||-.+|..+.|=+=+|.+-.||--|+-|-|..+-+=| -|-.+.|+-+..-||...+.+-.
T Consensus 403 ~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGH 477 (893)
T KOG0291|consen 403 RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGH 477 (893)
T ss_pred cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCC
Confidence 4566778999999999999999999999999999988877776554444 36789999999999997766543
No 36
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=72.18 E-value=7 Score=33.97 Aligned_cols=61 Identities=16% Similarity=0.276 Sum_probs=49.9
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeC-CcceEeeeecc
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVG-EDWKLYFHRKG 89 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcg-dDW~LY~h~~~ 89 (114)
-.+-+.++--+|.+|+.+.++|..+|-|-+=.-+=++=|....++.|=|| .|=.+|+-|.+
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~ 123 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPK 123 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence 45668889999999999999999999999888887776777778888887 46677776654
No 37
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=71.68 E-value=5.1 Score=34.82 Aligned_cols=46 Identities=28% Similarity=0.435 Sum_probs=35.8
Q ss_pred CCCCceEEEe-eCCeEEEEeCCCCeeeEEeecCCCeeeeeecC----CCCceeeeCCc
Q 033675 28 ESGDLALVAT-LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN----DPDFYVDVGED 80 (114)
Q Consensus 28 ~~~~taLVat-lDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~----~~~~fidcgdD 80 (114)
|+..+.|--+ |+|-.|=|.-++ ++|+|.|||.-.. .++||+-|||-
T Consensus 182 P~~~~slt~t~l~~~pfpv~Hg~-------ktG~p~ySs~~lfr~nkS~~~f~~fGDv 232 (356)
T COG5212 182 PAQSLSLTLTRLTGEPFPVSHGK-------KTGSPSYSSMLLFRSNKSNEFFAYFGDV 232 (356)
T ss_pred hhHeeeeeeeeecceeeeccCCc-------ccCCcccceEEEEecCCCcceEEEecCC
Confidence 3556666666 899999987776 8999999997554 34899999973
No 38
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=70.87 E-value=28 Score=28.93 Aligned_cols=91 Identities=20% Similarity=0.213 Sum_probs=51.6
Q ss_pred CCCCCCCCC----CCCCCceEEEeeCCeEEEEeCCCCeee-----EEeecCCCeeeeeecCCCCc-eeeeCC-cceEeee
Q 033675 18 LPPTSPRAS----PESGDLALVATLNGTVHLVDTKRGESR-----WSFSMGKPIYSSFTRNDPDF-YVDVGE-DWKLYFH 86 (114)
Q Consensus 18 ~p~~s~~~~----~~~~~taLVatlDGTiYLVd~~s~r~~-----WSFStGsPIYSSYqA~~~~~-fidcgd-DW~LY~h 86 (114)
++..+.+.+ ++....-..|+.||+|.++|..+|+.. .+-..-+|.++--..++..+ +.-+.| .+.++..
T Consensus 284 l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l 363 (456)
T KOG0266|consen 284 LKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDL 363 (456)
T ss_pred eeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEc
Confidence 344444444 456777778889999999999999932 33322225565544455555 444555 5777666
Q ss_pred eccccce-eeecccCCCceeeeec
Q 033675 87 RKGIGKM-KDIMKSTTPNCYFTNF 109 (114)
Q Consensus 87 ~~~~GK~-kl~~~s~~~~~~~~~~ 109 (114)
....=.+ ....... ..|.|-++
T Consensus 364 ~~~~~~~~~~~~~~~-~~~~~~~~ 386 (456)
T KOG0266|consen 364 RSGKSVGTYTGHSNL-VRCIFSPT 386 (456)
T ss_pred cCCcceeeecccCCc-ceeEeccc
Confidence 5332222 2222222 36776554
No 39
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=70.87 E-value=47 Score=25.73 Aligned_cols=56 Identities=11% Similarity=0.017 Sum_probs=32.6
Q ss_pred CeEEEEeCCCCeeeEEeecCCCeeeeeecC-CC-Ccee--eeCCcceEeeeeccccceeee
Q 033675 40 GTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DP-DFYV--DVGEDWKLYFHRKGIGKMKDI 96 (114)
Q Consensus 40 GTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~-~~fi--dcgdDW~LY~h~~~~GK~kl~ 96 (114)
.+||+++..+|+..--..-....++ .... +. .+++ +-++++++|.|+..-|+.+.+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRL 273 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCCCccEEEEECCCCCEEEC
Confidence 4799999888865432222223332 2222 32 2333 345678999999888876443
No 40
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=67.19 E-value=9.8 Score=20.11 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=15.4
Q ss_pred CCCceEEEeeCCeEEEEe
Q 033675 29 SGDLALVATLNGTVHLVD 46 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd 46 (114)
.....+.++-||+|.++|
T Consensus 22 ~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 22 DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp TSSEEEEEETTSEEEEEE
T ss_pred ccccceeeCCCCEEEEEC
Confidence 477888999999999886
No 41
>PRK13684 Ycf48-like protein; Provisional
Probab=66.18 E-value=27 Score=28.03 Aligned_cols=16 Identities=38% Similarity=0.600 Sum_probs=10.7
Q ss_pred hHHHHHHHHHhhcCCC
Q 033675 5 LIFLLLLTVILSSLPP 20 (114)
Q Consensus 5 li~ll~~~v~l~s~p~ 20 (114)
||++++++|.|++.+-
T Consensus 11 ~~~~~~~~~~~~~~~~ 26 (334)
T PRK13684 11 LLLLLALLLVLSGCST 26 (334)
T ss_pred HHHHHHHHhhccccCC
Confidence 5777777777775443
No 42
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=66.16 E-value=18 Score=32.84 Aligned_cols=63 Identities=22% Similarity=0.275 Sum_probs=50.2
Q ss_pred CceEEEeeCCeEEEEeCCCCeeeEEeecCCCee-eeeecCCCCceeeeCCcceEeeeeccccce
Q 033675 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIY-SSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 31 ~taLVatlDGTiYLVd~~s~r~~WSFStGsPIY-SSYqA~~~~~fidcgdDW~LY~h~~~~GK~ 93 (114)
---|-|+-|++|-|+|..+|+..=+|++|.+.| -.+++.+.--|+-=|-|=++---|.+-||.
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv 334 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV 334 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH
Confidence 345779999999999999999999999999999 555665545566667777777777777764
No 43
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=64.27 E-value=10 Score=33.79 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=50.1
Q ss_pred CCCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeecccc
Q 033675 26 SPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIG 91 (114)
Q Consensus 26 ~~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~G 91 (114)
.+.|+.+--+++-|++|+|.|+-.+.|.=+...+.-.-.-+=-|+..-|+--.+|-.||.||-++=
T Consensus 196 NpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l 261 (433)
T KOG0268|consen 196 NPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNL 261 (433)
T ss_pred CCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhh
Confidence 355777777788999999999999888887777665544333333345999999999999997653
No 44
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=64.02 E-value=20 Score=26.32 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=20.6
Q ss_pred cCCCCCCCCC-CCCCCceEEEeeCCeEEEEe
Q 033675 17 SLPPTSPRAS-PESGDLALVATLNGTVHLVD 46 (114)
Q Consensus 17 s~p~~s~~~~-~~~~~taLVatlDGTiYLVd 46 (114)
.||.++..+. ..++...+-..-||++|+-+
T Consensus 46 ~LP~a~~~~~~~~~~~i~v~i~~~G~~~l~~ 76 (137)
T COG0848 46 DLPKASAKPAPQDKKPIIVSVDADGQIYLND 76 (137)
T ss_pred cCCCCcCCCcCCCCCCEEEEEeCCCcEEECC
Confidence 6787744443 44556666677789999986
No 45
>PLN00181 protein SPA1-RELATED; Provisional
Probab=62.15 E-value=73 Score=28.08 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=43.1
Q ss_pred CCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeec-CC-CCceeeeCCcceEeeeeccccc
Q 033675 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTR-ND-PDFYVDVGEDWKLYFHRKGIGK 92 (114)
Q Consensus 30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA-~~-~~~fidcgdDW~LY~h~~~~GK 92 (114)
+...+.++.||+|.++|..+++..=++....++.+. +. ++ ...++-++.|=.+++-+.+.++
T Consensus 588 ~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v-~~~~~~g~~latgs~dg~I~iwD~~~~~ 651 (793)
T PLN00181 588 PTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCV-QFPSESGRSLAFGSADHKVYYYDLRNPK 651 (793)
T ss_pred CCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEE-EEeCCCCCEEEEEeCCCeEEEEECCCCC
Confidence 456677899999999999999988888776666643 33 22 3345666666666666665554
No 46
>PF04648 MF_alpha: Yeast mating factor alpha hormone; InterPro: IPR006742 This repeated sequence,WHWLQLKPGQPMY, characterises the mating factor alpha-1 or alpha-1 mating pheromone [contains: Mating factor alpha].The hormone is excreted into the culture medium by haploid cells of the alpha mating type and acts on cells of the opposite mating type (type A) by binding to a cognate G-protein coupled receptor which is coupled to a downstream signal transduction pathway. It inhibits DNA synthesis in type A cells synchronising them with type alpha, and so mediates the conjugation process.; GO: 0000772 mating pheromone activity, 0019953 sexual reproduction, 0005576 extracellular region
Probab=60.88 E-value=3.7 Score=20.79 Aligned_cols=9 Identities=44% Similarity=1.021 Sum_probs=7.9
Q ss_pred EeecCCCee
Q 033675 55 SFSMGKPIY 63 (114)
Q Consensus 55 SFStGsPIY 63 (114)
+|+.|.|||
T Consensus 5 ~~~~GqP~Y 13 (13)
T PF04648_consen 5 RLSPGQPMY 13 (13)
T ss_pred eccCCCcCC
Confidence 688999998
No 47
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=60.36 E-value=67 Score=26.44 Aligned_cols=66 Identities=20% Similarity=0.157 Sum_probs=45.2
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-C-CCceeeeCCcceEeeeeccccce
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-D-PDFYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~-~~~fidcgdDW~LY~h~~~~GK~ 93 (114)
++....++|++.||+|..+|..++++.-+...|.--++- ..+ | +-.|+-|-.+-++-.-|..-.+.
T Consensus 45 s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i-~~s~DG~~~~v~n~~~~~v~v~D~~tle~ 112 (369)
T PF02239_consen 45 SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI-AVSPDGKYVYVANYEPGTVSVIDAETLEP 112 (369)
T ss_dssp TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE-EE--TTTEEEEEEEETTEEEEEETTT--E
T ss_pred cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE-EEcCCCCEEEEEecCCCceeEeccccccc
Confidence 556678999999999999999999999999999865542 333 2 22366666666776666544443
No 48
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=59.98 E-value=14 Score=16.51 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=12.4
Q ss_pred CCceEEEeeCCeEEEEe
Q 033675 30 GDLALVATLNGTVHLVD 46 (114)
Q Consensus 30 ~~taLVatlDGTiYLVd 46 (114)
....+.++.||++++++
T Consensus 24 ~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 24 GKYLASASDDGTIKLWD 40 (40)
T ss_pred CCEEEEecCCCeEEEcC
Confidence 35677788888887764
No 49
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=58.89 E-value=97 Score=25.51 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=43.1
Q ss_pred CCceEEEee-CCeEEEEeCCCCeeeEEeecCCCeeeeee-cCCC-CceeeeCCcceEeeeeccccce
Q 033675 30 GDLALVATL-NGTVHLVDTKRGESRWSFSMGKPIYSSFT-RNDP-DFYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 30 ~~taLVatl-DGTiYLVd~~s~r~~WSFStGsPIYSSYq-A~~~-~~fidcgdDW~LY~h~~~~GK~ 93 (114)
.++.+|+.. +|+|.++|..+.++.-.|.+|...+.+-. .+|. -.|+-..|. .+..=|-..+|.
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg-~vsviD~~~~~~ 70 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDG-TVSVIDLATGKV 70 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTS-EEEEEETTSSSE
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCC-eEEEEECCcccE
Confidence 356666665 79999999999999999999887775533 3333 357766555 467777777765
No 50
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=56.66 E-value=1e+02 Score=26.52 Aligned_cols=66 Identities=21% Similarity=0.279 Sum_probs=50.7
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEEeec-----CCCeeeeeecCCCCceeeeCCcceEeeeeccccce
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSM-----GKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFSt-----GsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~ 93 (114)
|+-.+.-|+.+-+|.+|++|.-+|.+.=+|+. +-|+-.+ --||..|.+-|.+|=.+++-+.+-|+-
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~-ftPds~Fvl~gs~dg~i~vw~~~tg~~ 266 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSAT-FTPDSKFVLSGSDDGTIHVWNLETGKK 266 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEE-ECCCCcEEEEecCCCcEEEEEcCCCcE
Confidence 56788899999999999999999999998863 2343333 235667788888888887777777776
No 51
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=55.30 E-value=17 Score=31.30 Aligned_cols=32 Identities=38% Similarity=0.535 Sum_probs=28.3
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEEeec
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSM 58 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFSt 58 (114)
+...+.||-|++||++-++|..+|++.=.|.-
T Consensus 72 s~dg~~alS~swD~~lrlWDl~~g~~t~~f~G 103 (315)
T KOG0279|consen 72 SSDGNFALSASWDGTLRLWDLATGESTRRFVG 103 (315)
T ss_pred ccCCceEEeccccceEEEEEecCCcEEEEEEe
Confidence 45788999999999999999999999888754
No 52
>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]
Probab=55.22 E-value=15 Score=35.48 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=45.7
Q ss_pred CceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeec
Q 033675 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRK 88 (114)
Q Consensus 31 ~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~ 88 (114)
.+-+|.++| .+.+.+...|.+-|+-+ ..|+-++-+....-.|+---.||.||--.-
T Consensus 28 ~~~~~stid-~l~a~s~~~g~~~~~l~-~~pvv~~~~~~~~~~fl~~p~dgsly~l~~ 83 (903)
T KOG1027|consen 28 NLLLVSTID-SLHAPSSETGFIKWTLS-DDPVVASPDGVLQPAFLPDPRDGSLYTLGN 83 (903)
T ss_pred ccccccccc-cccCccccccceeeeec-cCccccCCccccccccCCCccccceeeccC
Confidence 677899999 99999999999999765 567777766665555777788999997665
No 53
>PF11153 DUF2931: Protein of unknown function (DUF2931); InterPro: IPR021326 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently, there is no known function.
Probab=54.78 E-value=16 Score=27.57 Aligned_cols=14 Identities=43% Similarity=0.776 Sum_probs=7.8
Q ss_pred CchhhHHHHHHHHH
Q 033675 1 MRRSLIFLLLLTVI 14 (114)
Q Consensus 1 mrr~li~ll~~~v~ 14 (114)
||+.++++|++++.
T Consensus 1 mk~i~~l~l~lll~ 14 (216)
T PF11153_consen 1 MKKILLLLLLLLLT 14 (216)
T ss_pred ChHHHHHHHHHHHH
Confidence 77766665444333
No 54
>PF03173 CHB_HEX: Putative carbohydrate binding domain; InterPro: IPR004866 This domain represents the N-terminal domain in chitobiases and beta-hexosaminidases 3.2.1.52 from EC. Chitobiases degrade chitin, which forms the exoskeleton in insects and crustaceans, and which is one of the most abundant polysaccharides on earth []. Beta-hexosaminidases are composed of either a HexA/HexB heterodimer or a HexB homodimer, and can hydrolyse diverse substrates, including GM(2)-gangliosides; mutations in this enzyme are associated with Tay-Sachs disease []. HexB is structurally similar to chitobiase, consisting of a beta sandwich structure; this structure is similar to that found in the cellulose-binding domain of cellulase from Cellulomonas fimi (IPR001919 from INTERPRO), suggesting that it may function as a carbohydrate-binding domain.; GO: 0030246 carbohydrate binding; PDB: 1C7T_A 1QBA_A 1QBB_A 1C7S_A.
Probab=54.58 E-value=6.9 Score=29.77 Aligned_cols=31 Identities=26% Similarity=0.605 Sum_probs=12.9
Q ss_pred CC-cceEeeeeccccceeeecccCCCceeeeeccccC
Q 033675 78 GE-DWKLYFHRKGIGKMKDIMKSTTPNCYFTNFRGNL 113 (114)
Q Consensus 78 gd-DW~LY~h~~~~GK~kl~~~s~~~~~~~~~~~~~~ 113 (114)
++ ||++|+|..| .+....++.--++-..|.|
T Consensus 47 ~~~dW~IYf~~ir-----~i~~~~s~~f~i~hinGDl 78 (164)
T PF03173_consen 47 PKSDWAIYFSSIR-----PILQVDSDQFKITHINGDL 78 (164)
T ss_dssp -----EEEEE-SS------EEEESSTTEEEEE-STTE
T ss_pred CCCCeEEEEecce-----eeeccCCCCeEEEEEcCeE
Confidence 44 9999999753 2222334444455555543
No 55
>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs.
Probab=54.10 E-value=23 Score=18.51 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=17.8
Q ss_pred EEEeeCCeEEEEeCCCCeeeEE
Q 033675 34 LVATLNGTVHLVDTKRGESRWS 55 (114)
Q Consensus 34 LVatlDGTiYLVd~~s~r~~WS 55 (114)
..-+.+|.+|+++..+++..|.
T Consensus 6 ~~~~~~g~~yy~n~~t~~s~W~ 27 (31)
T cd00201 6 ERWDPDGRVYYYNHNTKETQWE 27 (31)
T ss_pred EEECCCCCEEEEECCCCCEeCC
Confidence 3445669999999999998885
No 56
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=53.03 E-value=35 Score=24.93 Aligned_cols=63 Identities=24% Similarity=0.304 Sum_probs=35.2
Q ss_pred ceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccceeeec
Q 033675 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMKDIM 97 (114)
Q Consensus 32 taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~kl~~ 97 (114)
+-+|-..+|+||-++..+++.. .+....|.-.-+..+++.+|+-....-.++ +...|+.+...
T Consensus 14 l~~~D~~~~~i~~~~~~~~~~~-~~~~~~~~G~~~~~~~g~l~v~~~~~~~~~--d~~~g~~~~~~ 76 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDTGEVE-VIDLPGPNGMAFDRPDGRLYVADSGGIAVV--DPDTGKVTVLA 76 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEE-EEESSSEEEEEEECTTSEEEEEETTCEEEE--ETTTTEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEE-EEecCCCceEEEEccCCEEEEEEcCceEEE--ecCCCcEEEEe
Confidence 3333345777777777776653 123333555544444556677666666555 66666664333
No 57
>PRK03629 tolB translocation protein TolB; Provisional
Probab=51.57 E-value=1.1e+02 Score=25.05 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=35.2
Q ss_pred CceEEEeeCC--eEEEEeCCCCeeeEEeecCCCeeeeeecCCCCcee----eeCCcceEeeeecccccee
Q 033675 31 DLALVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYV----DVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 31 ~taLVatlDG--TiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fi----dcgdDW~LY~h~~~~GK~k 94 (114)
.++++.+.+| .||++|.+++++. ....+..+..+..-+|.+-.| |-+..+++|..+..-|+.+
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~ 324 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ 324 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence 3445556677 4999998887654 333333333333444433222 1223479998887666653
No 58
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=51.53 E-value=39 Score=32.78 Aligned_cols=48 Identities=15% Similarity=0.172 Sum_probs=40.5
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCcee
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYV 75 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fi 75 (114)
|+.+.-.++|+.|+||-.||-.+|..+=.|..-+|.-+- ..+||+.|+
T Consensus 585 S~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sl-s~SPngD~L 632 (910)
T KOG1539|consen 585 SPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSL-SFSPNGDFL 632 (910)
T ss_pred CCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceee-EECCCCCEE
Confidence 667888899999999999999999999999999998764 566775444
No 59
>PRK00178 tolB translocation protein TolB; Provisional
Probab=50.96 E-value=1.2e+02 Score=24.19 Aligned_cols=64 Identities=14% Similarity=0.185 Sum_probs=37.1
Q ss_pred CceEEEeeCC--eEEEEeCCCCeeeEEeecCCCeeeeeecCCC-C-c-eee-eCCcceEeeeeccccceee
Q 033675 31 DLALVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-D-F-YVD-VGEDWKLYFHRKGIGKMKD 95 (114)
Q Consensus 31 ~taLVatlDG--TiYLVd~~s~r~~WSFStGsPIYSSYqA~~~-~-~-fid-cgdDW~LY~h~~~~GK~kl 95 (114)
.+++..+.+| .||+++.++++.. .+..+.-+..+...++. . . |.. =+.++++|..+..-|+.+.
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~ 325 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER 325 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 3445556677 6999998887653 34444334444444433 2 2 222 2336899999887777643
No 60
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=50.30 E-value=12 Score=32.49 Aligned_cols=24 Identities=46% Similarity=0.591 Sum_probs=19.3
Q ss_pred CchhhHHHHHHHHHhhcCCCCCCC
Q 033675 1 MRRSLIFLLLLTVILSSLPPTSPR 24 (114)
Q Consensus 1 mrr~li~ll~~~v~l~s~p~~s~~ 24 (114)
|||+|-+|+..++.|+++|.-+.|
T Consensus 1 Mrr~l~lll~~~l~l~s~~av~A~ 24 (337)
T COG2247 1 MRRLLMLLLASLLALSSPPAVSAQ 24 (337)
T ss_pred CccHHHHHHHHHHHHhcchhhhhh
Confidence 999999999999999966654444
No 61
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=49.53 E-value=10 Score=32.46 Aligned_cols=65 Identities=20% Similarity=0.274 Sum_probs=40.7
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecC----CC-CceeeeCCcceEeeeeccccce
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN----DP-DFYVDVGEDWKLYFHRKGIGKM 93 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~----~~-~~fidcgdDW~LY~h~~~~GK~ 93 (114)
+...+-.|++++|+||.|.|..+||.+=+.--- +--.|... .. .--+.|.+|=..|+-+--=++.
T Consensus 192 s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh--kn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 192 SKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH--KNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred cCCCCEEEEeeccceeeecccchhHHHHHhccc--ccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 456788999999999999999999987543211 11223222 22 2355666776666655444443
No 62
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=48.75 E-value=34 Score=18.47 Aligned_cols=22 Identities=9% Similarity=0.237 Sum_probs=17.3
Q ss_pred ceEEEeeCCeEEEEeCCCCeee
Q 033675 32 LALVATLNGTVHLVDTKRGESR 53 (114)
Q Consensus 32 taLVatlDGTiYLVd~~s~r~~ 53 (114)
..+.++-||.||..|....|+.
T Consensus 5 ~gvav~~~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEEETTSEEEEEECCCTEEE
T ss_pred cEEEEeCCCCEEEEECCCCEEE
Confidence 3456669999999998887763
No 63
>PRK04792 tolB translocation protein TolB; Provisional
Probab=48.11 E-value=1.6e+02 Score=24.45 Aligned_cols=71 Identities=21% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCCCCCCCCceEEEeeCC--eEEEEeCCCCeee--EEeecCCCeeeeeecCCC-C-c-ee-eeCCcceEeeeecccccee
Q 033675 23 PRASPESGDLALVATLNG--TVHLVDTKRGESR--WSFSMGKPIYSSFTRNDP-D-F-YV-DVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 23 ~~~~~~~~~taLVatlDG--TiYLVd~~s~r~~--WSFStGsPIYSSYqA~~~-~-~-fi-dcgdDW~LY~h~~~~GK~k 94 (114)
|+-++-...++++...+| .||+++..+|+.. -++. | ...+...++. . . |. +-+..++||..+..-|+.+
T Consensus 223 p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g--~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~ 299 (448)
T PRK04792 223 PAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-G--INGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT 299 (448)
T ss_pred ceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-C--CcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE
Confidence 333333444555555555 5999988877643 2222 1 1122333333 2 2 22 3355689999998877765
Q ss_pred ee
Q 033675 95 DI 96 (114)
Q Consensus 95 l~ 96 (114)
.+
T Consensus 300 ~l 301 (448)
T PRK04792 300 RI 301 (448)
T ss_pred EC
Confidence 43
No 64
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=47.99 E-value=34 Score=29.58 Aligned_cols=44 Identities=20% Similarity=0.377 Sum_probs=37.2
Q ss_pred CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC
Q 033675 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP 71 (114)
Q Consensus 28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~ 71 (114)
+..+.-||++|||++-|.|-+.....=.|..+.|+-.-.=+++.
T Consensus 23 ~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~ 66 (323)
T KOG1036|consen 23 PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES 66 (323)
T ss_pred CcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCc
Confidence 56778899999999999988888888899999999877655544
No 65
>smart00108 B_lectin Bulb-type mannose-specific lectin.
Probab=47.64 E-value=83 Score=21.03 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=17.1
Q ss_pred ceEEEeeCCeEEEEeCCCCeeeEEeec
Q 033675 32 LALVATLNGTVHLVDTKRGESRWSFSM 58 (114)
Q Consensus 32 taLVatlDGTiYLVd~~s~r~~WSFSt 58 (114)
..|+-.-||.+.+.+.+ ++++|+=.+
T Consensus 56 ~~l~l~~dGnLvl~~~~-g~~vW~S~t 81 (114)
T smart00108 56 CTLTLQSDGNLVLYDGD-GRVVWSSNT 81 (114)
T ss_pred EEEEEeCCCCEEEEeCC-CCEEEEecc
Confidence 55555667888777654 567777544
No 66
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=47.46 E-value=36 Score=29.43 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=31.0
Q ss_pred EeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCc
Q 033675 36 ATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDF 73 (114)
Q Consensus 36 atlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~ 73 (114)
|.-||.++|||.+.+|-+-+|..+.+|.|-+ ..||.+
T Consensus 210 Ggkdg~~~LwdL~~~k~lysl~a~~~v~sl~-fspnry 246 (315)
T KOG0279|consen 210 GGKDGEAMLWDLNEGKNLYSLEAFDIVNSLC-FSPNRY 246 (315)
T ss_pred CCCCceEEEEEccCCceeEeccCCCeEeeEE-ecCCce
Confidence 5689999999999999999999999998874 444433
No 67
>smart00456 WW Domain with 2 conserved Trp (W) residues. Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.
Probab=47.06 E-value=42 Score=17.92 Aligned_cols=22 Identities=14% Similarity=0.286 Sum_probs=17.7
Q ss_pred EEEeeCCeEEEEeCCCCeeeEE
Q 033675 34 LVATLNGTVHLVDTKRGESRWS 55 (114)
Q Consensus 34 LVatlDGTiYLVd~~s~r~~WS 55 (114)
-.-+.+|..|+++..+++..|.
T Consensus 7 ~~~~~~g~~yy~n~~t~~s~W~ 28 (32)
T smart00456 7 ERKDPDGRPYYYNHETKETQWE 28 (32)
T ss_pred EEECCCCCEEEEECCCCCEEcC
Confidence 3445569999999999998885
No 68
>PRK12472 hypothetical protein; Provisional
Probab=46.85 E-value=76 Score=29.00 Aligned_cols=43 Identities=16% Similarity=0.210 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCCceEEEee-CCeEEEEeCCCCeeeEEeecCCC
Q 033675 19 PPTSPRASPESGDLALVATL-NGTVHLVDTKRGESRWSFSMGKP 61 (114)
Q Consensus 19 p~~s~~~~~~~~~taLVatl-DGTiYLVd~~s~r~~WSFStGsP 61 (114)
|.+-..|+..-..+.++.++ +-++++.+.+.-...+..++|.+
T Consensus 41 p~~~t~p~~vG~p~vVvVDLs~QrLtVYddGg~V~t~PVSTGk~ 84 (508)
T PRK12472 41 PTEATAPREAGEPIMAIVSIKSQRVTLYDADGWILRAPVSTGTT 84 (508)
T ss_pred CCCCcCcccCCCCEEEEEEccCCEEEEEECCEEEEEEEEeccCC
Confidence 44444555555666667777 68889988665556666788886
No 69
>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional
Probab=46.23 E-value=39 Score=25.71 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=22.2
Q ss_pred CchhhHHHHHHHHHhhcCCCCCCCCCCCCCCceEEEeeCCeEEEE
Q 033675 1 MRRSLIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHLV 45 (114)
Q Consensus 1 mrr~li~ll~~~v~l~s~p~~s~~~~~~~~~taLVatlDGTiYLV 45 (114)
|||.++.+++++. +...++.. +.+.....+++-+-.|+|-+-
T Consensus 2 ~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~v~l~T~~G~i~ie 43 (190)
T PRK10903 2 FKSTLAAMAAVFA-LSALSPAA--LAAKGDPHVLLTTSAGNIELE 43 (190)
T ss_pred hHHHHHHHHHHHH-Hhhccccc--cccCCCcEEEEEeccccEEEE
Confidence 7898887775554 33333211 222334445666666665443
No 70
>PRK04922 tolB translocation protein TolB; Provisional
Probab=45.32 E-value=1.7e+02 Score=23.83 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=36.2
Q ss_pred CceEEEeeCC--eEEEEeCCCCeeeEEeecCCCeeeeeecCCCCcee----eeCCcceEeeeeccccceeee
Q 033675 31 DLALVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYV----DVGEDWKLYFHRKGIGKMKDI 96 (114)
Q Consensus 31 ~taLVatlDG--TiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fi----dcgdDW~LY~h~~~~GK~kl~ 96 (114)
.+++.++.+| .||+++..+++.. ....+..+-.+...++.+-+| |-+..+++|..+..-|+.+.+
T Consensus 261 ~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l 331 (433)
T PRK04922 261 RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERL 331 (433)
T ss_pred EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe
Confidence 3455667777 4999998888753 444433332333333332222 122246899988766766443
No 71
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=44.81 E-value=84 Score=28.07 Aligned_cols=63 Identities=11% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCC------ceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC-CceeeeCCc
Q 033675 18 LPPTSPRASPESGD------LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DFYVDVGED 80 (114)
Q Consensus 18 ~p~~s~~~~~~~~~------taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~-~~fidcgdD 80 (114)
.|.++....+.-+. .-.++++|+||=++|.++|+..-....-.-=-++....|. -|.+.|-||
T Consensus 286 ap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDD 355 (406)
T KOG0295|consen 286 APESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADD 355 (406)
T ss_pred cccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecC
No 72
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=44.39 E-value=61 Score=30.82 Aligned_cols=81 Identities=23% Similarity=0.304 Sum_probs=48.0
Q ss_pred CCCceEEEeeCCeEEEEeCCCC--eeeEEee------cC-CCeeeee--ecCCCCc-ee--eeCCcceEeeeecccccee
Q 033675 29 SGDLALVATLNGTVHLVDTKRG--ESRWSFS------MG-KPIYSSF--TRNDPDF-YV--DVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~--r~~WSFS------tG-sPIYSSY--qA~~~~~-fi--dcgdDW~LY~h~~~~GK~k 94 (114)
....+.-|+||+.|++||-++| +..=||. .+ +|+-|=| .++++++ ++ +|.+|=++| |.+.+|..
T Consensus 129 ~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~w--Dprt~~ki 206 (735)
T KOG0308|consen 129 NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLW--DPRTCKKI 206 (735)
T ss_pred CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEe--ccccccce
Confidence 4445555789999999999988 4455553 34 4444434 5556654 33 456665555 77777764
Q ss_pred eecccCCCc--eeeeeccc
Q 033675 95 DIMKSTTPN--CYFTNFRG 111 (114)
Q Consensus 95 l~~~s~~~~--~~~~~~~~ 111 (114)
......|-| |-.+|=.|
T Consensus 207 mkLrGHTdNVr~ll~~dDG 225 (735)
T KOG0308|consen 207 MKLRGHTDNVRVLLVNDDG 225 (735)
T ss_pred eeeeccccceEEEEEcCCC
Confidence 444455555 33444444
No 73
>KOG2103 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.66 E-value=3.1e+02 Score=26.97 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=46.3
Q ss_pred ceEEEeeCCeEEEEeCCCCeeeEEeecCCCe-----eeeeec--------CCC-Cc-ee-eeCCcceEeeeecccccee
Q 033675 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPI-----YSSFTR--------NDP-DF-YV-DVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 32 taLVatlDGTiYLVd~~s~r~~WSFStGsPI-----YSSYqA--------~~~-~~-fi-dcgdDW~LY~h~~~~GK~k 94 (114)
.-+|.+.+|+|+-.|+.+|+..|+.-=+.+. -.+|+- ++. .+ |. +|.+.-.||.-++..||.+
T Consensus 453 ~iIvlT~tGkiFglds~~G~i~Wkl~L~~~~~~~e~v~l~vqr~~~H~~~d~~~svlf~~k~s~~gvly~fn~~~Gkv~ 531 (910)
T KOG2103|consen 453 MIIVLTSTGKIFGLDSVDGQIHWKLWLPNVQQNPEGVKLFVQRTTAHFPLDEDPSVLFVHKGSGNGVLYEFNPITGKVI 531 (910)
T ss_pred EEEEEecCceEEEEEcCCCeEEEEEecCcccCCcccceEEEEeccccCCCCCCCeEEEEeccCCCeEEEEEecCcceee
Confidence 6789999999999999999999999888776 233311 111 22 22 3455668999999999974
No 74
>PF05567 Neisseria_PilC: Neisseria PilC beta-propeller domain; InterPro: IPR008707 This domain is found in several PilC protein sequences from Neisseria gonorrhoeae and Neisseria meningitidis. PilC is a phase-variable protein associated with pilus-mediated adherence of pathogenic Neisseria to target cells [].; PDB: 3HX6_A.
Probab=43.63 E-value=84 Score=25.78 Aligned_cols=59 Identities=22% Similarity=0.206 Sum_probs=33.7
Q ss_pred CCeEEEEeCCC-CeeeEEeecCC--CeeeeeecC--CCCceeeeCCcceEeeeeccccce-eeecccCCCc
Q 033675 39 NGTVHLVDTKR-GESRWSFSMGK--PIYSSFTRN--DPDFYVDVGEDWKLYFHRKGIGKM-KDIMKSTTPN 103 (114)
Q Consensus 39 DGTiYLVd~~s-~r~~WSFStGs--PIYSSYqA~--~~~~fidcgdDW~LY~h~~~~GK~-kl~~~s~~~~ 103 (114)
.+.||++|.++ |+.+|++..+. ..-+.-.+- +.|+++|. +|+=|. .|++ |.-+.+..|+
T Consensus 180 ~~~lyi~d~~t~G~l~~~i~~~~~~~gl~~~~~~D~d~DG~~D~-----vYaGDl-~GnlwR~dl~~~~~~ 244 (335)
T PF05567_consen 180 GAALYILDADTTGALIKKIDVPGGSGGLSSPAVVDSDGDGYVDR-----VYAGDL-GGNLWRFDLSSANPS 244 (335)
T ss_dssp -EEEEEEETTT---EEEEEEE--STT-EEEEEEE-TTSSSEE-E-----EEEEET-TSEEEEEE--TTSTT
T ss_pred CcEEEEEECCCCCceEEEEecCCCCccccccEEEeccCCCeEEE-----EEEEcC-CCcEEEEECCCCCcc
Confidence 36799999999 99999997644 222222221 45788873 677665 4777 7666666654
No 75
>PRK02710 plastocyanin; Provisional
Probab=41.72 E-value=1.1e+02 Score=21.23 Aligned_cols=86 Identities=15% Similarity=0.207 Sum_probs=43.4
Q ss_pred CchhhHHHHHHHHHhhcCCCCCCCCCCCCCCceEEEeeCCeEEEE----e-CCCCeeeEEeecCCCeeeeeecCC----C
Q 033675 1 MRRSLIFLLLLTVILSSLPPTSPRASPESGDLALVATLNGTVHLV----D-TKRGESRWSFSMGKPIYSSFTRND----P 71 (114)
Q Consensus 1 mrr~li~ll~~~v~l~s~p~~s~~~~~~~~~taLVatlDGTiYLV----d-~~s~r~~WSFStGsPIYSSYqA~~----~ 71 (114)
|||.+.+++..++++..+.-. +.+.+.++-++.+++-||.+.+. + ..-.++.|.-..+.|---.....+ .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~-~~~a~a~~~~V~~~~~~~~~~F~P~~i~v~~Gd~V~~~N~~~~~H~v~~~~~~~~~~~ 80 (119)
T PRK02710 2 AKRLRSIAAALVAVVSSFGLG-VSSASAETVEVKMGSDAGMLAFEPSTLTIKAGDTVKWVNNKLAPHNAVFDGAKELSHK 80 (119)
T ss_pred chhHHHHHHHHHHHHHHHHhc-ccccccceEEEEEccCCCeeEEeCCEEEEcCCCEEEEEECCCCCceEEecCCcccccc
Confidence 567777766666655554422 22334455666677767776654 1 122367786444444211111110 1
Q ss_pred CceeeeCCcceEeeee
Q 033675 72 DFYVDVGEDWKLYFHR 87 (114)
Q Consensus 72 ~~fidcgdDW~LY~h~ 87 (114)
+.-++-|+.|++.+..
T Consensus 81 ~~~~~pg~t~~~tF~~ 96 (119)
T PRK02710 81 DLAFAPGESWEETFSE 96 (119)
T ss_pred ccccCCCCEEEEEecC
Confidence 1235566667766553
No 76
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=41.56 E-value=30 Score=28.19 Aligned_cols=38 Identities=29% Similarity=0.474 Sum_probs=29.1
Q ss_pred HHhhcCCCCCCCCCCCCCCceEEEeeCCeEEEEeCCCC
Q 033675 13 VILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRG 50 (114)
Q Consensus 13 v~l~s~p~~s~~~~~~~~~taLVatlDGTiYLVd~~s~ 50 (114)
|.|-.||-.++........+.|-+..||++|++..+++
T Consensus 223 I~l~~LP~~~~~~~~~~~~y~lCvC~~GkLF~v~~~~~ 260 (264)
T PF04790_consen 223 IRLPNLPISSSPSGSRQGQYKLCVCPNGKLFLVPAGSG 260 (264)
T ss_pred EEeCCCccCCCCCCCCCccEEEEECCCCCEEEeeCCCC
Confidence 44557887777555555689999999999999987665
No 77
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=40.68 E-value=60 Score=17.39 Aligned_cols=31 Identities=23% Similarity=0.311 Sum_probs=23.6
Q ss_pred CCceEEEee-CCeEEEEeCCCCeeeEEeecCC
Q 033675 30 GDLALVATL-NGTVHLVDTKRGESRWSFSMGK 60 (114)
Q Consensus 30 ~~taLVatl-DGTiYLVd~~s~r~~WSFStGs 60 (114)
.+..+|+.. +++|..+|..++++.=++..|.
T Consensus 3 ~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~ 34 (42)
T TIGR02276 3 GTKLYVTNSGSNTVSVIDTATNKVIATIPVGG 34 (42)
T ss_pred CCEEEEEeCCCCEEEEEECCCCeEEEEEECCC
Confidence 345666664 7899999999998887777764
No 78
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=40.68 E-value=38 Score=23.83 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=12.1
Q ss_pred CchhhHHHHHHHHHhh
Q 033675 1 MRRSLIFLLLLTVILS 16 (114)
Q Consensus 1 mrr~li~ll~~~v~l~ 16 (114)
|||.+++++++++.+.
T Consensus 1 M~~~~~~~~~~~~~~~ 16 (162)
T PF12276_consen 1 MKRRLLLALALALLAL 16 (162)
T ss_pred CchHHHHHHHHHHHHh
Confidence 8888888877776653
No 79
>TIGR03054 photo_alph_chp1 putative photosynthetic complex assembly protein. In twenty or so anoxygenic photosynthetic alpha-Proteobacteria known so far, a gene for a member of this protein family is present and is found in the vicinity of puhA, which encodes a component of the photosynthetic reaction center, and other genes associated with photosynthesis. This protein family is suggested, consequently, as a probable assembly factor for the photosynthetic reaction center, but its seems its actual function has not yet been demonstrated.
Probab=40.37 E-value=1.3e+02 Score=22.78 Aligned_cols=33 Identities=24% Similarity=0.204 Sum_probs=28.9
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCC
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKP 61 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsP 61 (114)
+-++.|....||.|=.++..+|+.+=+++.|+-
T Consensus 40 ~r~l~f~d~~~G~v~V~~~~~G~~va~~~~g~~ 72 (135)
T TIGR03054 40 SLWLVFEDRPDGAVAVVETPDGRLVAILEPGQN 72 (135)
T ss_pred EEEEEEecCCCCeEEEEECCCCCEEEEecCCCC
Confidence 567888899999999999999999999988853
No 80
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=40.18 E-value=2.1e+02 Score=23.54 Aligned_cols=34 Identities=12% Similarity=0.131 Sum_probs=27.4
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI 62 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI 62 (114)
++++..|-+--|.+-.++-..+|.+=+...|-+.
T Consensus 41 p~~V~~V~~~~G~~T~I~f~~gE~I~~va~GDt~ 74 (292)
T PRK13861 41 PDQVVRLSTAVGATLVVTFGANETVTAVAVSNSK 74 (292)
T ss_pred CCCEEEEEEECCcEEEEEECCCCEEEEecccccc
Confidence 6777788888888888888888888777777774
No 81
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=40.09 E-value=22 Score=32.18 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=16.7
Q ss_pred CceEEEe-eCCeEEEEeCCCCeeeE
Q 033675 31 DLALVAT-LNGTVHLVDTKRGESRW 54 (114)
Q Consensus 31 ~taLVat-lDGTiYLVd~~s~r~~W 54 (114)
.+-|||+ .-|.||+|+.+||+.+=
T Consensus 93 G~~l~ag~i~g~lYlWelssG~LL~ 117 (476)
T KOG0646|consen 93 GYFLLAGTISGNLYLWELSSGILLN 117 (476)
T ss_pred ceEEEeecccCcEEEEEeccccHHH
Confidence 3444555 88888888888887653
No 82
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=38.26 E-value=29 Score=31.26 Aligned_cols=32 Identities=16% Similarity=0.258 Sum_probs=28.1
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEEeec
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSM 58 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFSt 58 (114)
||...+++-|+-||.||+|+..+||..=..+.
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence 67788999999999999999999998877654
No 83
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=38.19 E-value=37 Score=27.34 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.1
Q ss_pred CchhhHHHHHHHHHhh
Q 033675 1 MRRSLIFLLLLTVILS 16 (114)
Q Consensus 1 mrr~li~ll~~~v~l~ 16 (114)
||+.++++++..++|.
T Consensus 1 ~~~~~~~~~~~~~~l~ 16 (236)
T PRK12696 1 MRKRLLATSLAVLLLA 16 (236)
T ss_pred CcccHHHHHHHHHHHh
Confidence 7888877777777774
No 84
>PF03032 Brevenin: Brevenin/esculentin/gaegurin/rugosin family; InterPro: IPR004275 In addition to the highly specific cell-mediated immune system, vertebrates possess an efficient host-defence mechanism against invading microorganisms which involves the synthesis of highly potent antimicrobial peptides with a large spectrum of activity. This entry represents a number of these defence peptides secreted from the skin of amphibians, including the opiate-like dermorphins and deltorphins, and the antimicrobial dermoseptins and temporins.; GO: 0006952 defense response, 0042742 defense response to bacterium, 0005576 extracellular region
Probab=37.72 E-value=21 Score=22.62 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=15.2
Q ss_pred CchhhHHHHHHHHHhhcCCCC
Q 033675 1 MRRSLIFLLLLTVILSSLPPT 21 (114)
Q Consensus 1 mrr~li~ll~~~v~l~s~p~~ 21 (114)
|+.+|.+|+|+-.|-.|+=.+
T Consensus 3 lKKsllLlfflG~ISlSlCee 23 (46)
T PF03032_consen 3 LKKSLLLLFFLGTISLSLCEE 23 (46)
T ss_pred chHHHHHHHHHHHcccchHHH
Confidence 678888888877776666544
No 85
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=37.55 E-value=2e+02 Score=22.57 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=29.2
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY 63 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIY 63 (114)
++++.-|-+.-|.+-.++...||.+-+...|-+.-
T Consensus 37 p~~v~~V~~~~g~~T~I~f~~gE~I~~v~~GDt~~ 71 (243)
T TIGR02781 37 PDDVVRVVTSYGYSTTIEFADDETIKTVAVGDSKA 71 (243)
T ss_pred CCCEEEEEEECCEEEEEEeCCCCEEEEecccCCcc
Confidence 67777888888888888999999998888888753
No 86
>PRK10449 heat-inducible protein; Provisional
Probab=37.42 E-value=1.4e+02 Score=21.55 Aligned_cols=14 Identities=14% Similarity=0.411 Sum_probs=8.8
Q ss_pred CchhhHHHHHHHHH
Q 033675 1 MRRSLIFLLLLTVI 14 (114)
Q Consensus 1 mrr~li~ll~~~v~ 14 (114)
|+|.++++++.+++
T Consensus 1 mk~~~~~~~~~~~l 14 (140)
T PRK10449 1 MKKVVALVALSLLM 14 (140)
T ss_pred ChhHHHHHHHHHHH
Confidence 78888765544443
No 87
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=36.99 E-value=1.5e+02 Score=26.03 Aligned_cols=87 Identities=14% Similarity=0.138 Sum_probs=59.2
Q ss_pred HHhhcCCCCCCCCCCCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCC-ceeeeCCcceEeeeecccc
Q 033675 13 VILSSLPPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD-FYVDVGEDWKLYFHRKGIG 91 (114)
Q Consensus 13 v~l~s~p~~s~~~~~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~-~fidcgdDW~LY~h~~~~G 91 (114)
||-.+|||+ .++|-.-++-|++-+|||.-+|.-.=+|.-...--.+....|++ .|.-+-||=.-=+-|-+-+
T Consensus 189 V~slsl~p~-------~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD 261 (343)
T KOG0286|consen 189 VMSLSLSPS-------DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD 261 (343)
T ss_pred EEEEecCCC-------CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC
Confidence 344566664 67888899999999999999999999999888777776666664 4777777754444444444
Q ss_pred ceeeecccCCCceee
Q 033675 92 KMKDIMKSTTPNCYF 106 (114)
Q Consensus 92 K~kl~~~s~~~~~~~ 106 (114)
.--..-++..-||-+
T Consensus 262 ~~~a~ys~~~~~~gi 276 (343)
T KOG0286|consen 262 QELAVYSHDSIICGI 276 (343)
T ss_pred cEEeeeccCcccCCc
Confidence 333333333344433
No 88
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=36.90 E-value=76 Score=21.86 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=21.6
Q ss_pred CCceEEEeeCCeEEEEeCCCCeeeEEe
Q 033675 30 GDLALVATLNGTVHLVDTKRGESRWSF 56 (114)
Q Consensus 30 ~~taLVatlDGTiYLVd~~s~r~~WSF 56 (114)
....++-.-||.+.|.+ .+++++|+-
T Consensus 53 ~~~~~~L~~~GNlvl~d-~~~~~lW~S 78 (114)
T PF01453_consen 53 SGCYLVLQDDGNLVLYD-SSGNVLWQS 78 (114)
T ss_dssp SSEEEEEETTSEEEEEE-TTSEEEEES
T ss_pred cCeEEEEeCCCCEEEEe-ecceEEEee
Confidence 46677777899999999 689999985
No 89
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=36.85 E-value=1.7e+02 Score=26.64 Aligned_cols=77 Identities=22% Similarity=0.363 Sum_probs=50.3
Q ss_pred CCCceEEEeeCCeEEEEeCC---CCeeeEEeecCCCeeeeeecCCCC----------ceeeeCCc----ceEeeeecccc
Q 033675 29 SGDLALVATLNGTVHLVDTK---RGESRWSFSMGKPIYSSFTRNDPD----------FYVDVGED----WKLYFHRKGIG 91 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~---s~r~~WSFStGsPIYSSYqA~~~~----------~fidcgdD----W~LY~h~~~~G 91 (114)
++.+-|-++.|||+-|+|-- ..-..|+|...--.-.==+.+++. .+.|.-.. |++=+|+...+
T Consensus 298 ~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 298 EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEIS 377 (463)
T ss_pred CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcc
Confidence 77788889999999999654 555678876653221111111211 24444444 99999999666
Q ss_pred ceeeecccCCCceeee
Q 033675 92 KMKDIMKSTTPNCYFT 107 (114)
Q Consensus 92 K~kl~~~s~~~~~~~~ 107 (114)
. +..+..+|||--|
T Consensus 378 g--l~~n~~~p~~l~t 391 (463)
T KOG0270|consen 378 G--LSVNIQTPGLLST 391 (463)
T ss_pred e--EEecCCCCcceee
Confidence 5 5677888988665
No 90
>PRK05137 tolB translocation protein TolB; Provisional
Probab=35.90 E-value=2.4e+02 Score=22.89 Aligned_cols=68 Identities=10% Similarity=0.159 Sum_probs=45.1
Q ss_pred CCCceEEEeeCC------eEEEEeCCCCeeeEEeecCCCeeeeeecCCCC--ceee-eCCcceEeeeeccccceeee
Q 033675 29 SGDLALVATLNG------TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPD--FYVD-VGEDWKLYFHRKGIGKMKDI 96 (114)
Q Consensus 29 ~~~taLVatlDG------TiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~--~fid-cgdDW~LY~h~~~~GK~kl~ 96 (114)
.+.+|+|....| .||++|.+.+.+..--..++++.+.-=.||.. .|+. .+++.++|..+..-|+.+..
T Consensus 165 ~~~iafv~~~~~~~~~~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l 241 (435)
T PRK05137 165 DTRIVYVAESGPKNKRIKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELV 241 (435)
T ss_pred CCeEEEEEeeCCCCCcceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEe
Confidence 567888887777 89999988777664444455666543233333 2443 34679999999887776443
No 91
>PRK05137 tolB translocation protein TolB; Provisional
Probab=35.87 E-value=2.4e+02 Score=22.89 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=31.7
Q ss_pred ceEEEeeCC--eEEEEeCCCCeeeEEeecCCCeeeeeecCCCCc---eeee-CCcceEeeeeccccceee
Q 033675 32 LALVATLNG--TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDF---YVDV-GEDWKLYFHRKGIGKMKD 95 (114)
Q Consensus 32 taLVatlDG--TiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~---fidc-gdDW~LY~h~~~~GK~kl 95 (114)
+++++..+| .||+++.+++++.- ...+..-+.+...++.+- |..- +++++++..+..-|+.+.
T Consensus 304 i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~ 372 (435)
T PRK05137 304 IVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERI 372 (435)
T ss_pred EEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEe
Confidence 455554555 69999887765542 222222233333333332 2221 234778887764444433
No 92
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=35.26 E-value=1.1e+02 Score=27.87 Aligned_cols=56 Identities=20% Similarity=0.380 Sum_probs=47.8
Q ss_pred CCCceEEEeeCCeEEEEeCCCC-eeeEEeecCCCeeeeeecCCCCceeeeCCc----ceEe
Q 033675 29 SGDLALVATLNGTVHLVDTKRG-ESRWSFSMGKPIYSSFTRNDPDFYVDVGED----WKLY 84 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~-r~~WSFStGsPIYSSYqA~~~~~fidcgdD----W~LY 84 (114)
.+-..+-++-||+|=|+|..+. .+.-+++-|-|+-+=...|..+-++-||.. |.|.
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence 3447888999999999999988 888999999999998888877778888854 8776
No 93
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=34.46 E-value=2e+02 Score=26.58 Aligned_cols=81 Identities=21% Similarity=0.216 Sum_probs=54.5
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEe-ecCCCeeeeeecCCCCceeeeCCc-ceEeeeeccccceeeecccCCCcee-
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSF-SMGKPIYSSFTRNDPDFYVDVGED-WKLYFHRKGIGKMKDIMKSTTPNCY- 105 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSF-StGsPIYSSYqA~~~~~fidcgdD-W~LY~h~~~~GK~kl~~~s~~~~~~- 105 (114)
++..-+-|+-|+||-++|-.+|.++-.| --+.|.||- .-++++-|+-.|+- =.+-.-+. |...+..+-.-||+
T Consensus 421 ~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysv-afS~~g~ylAsGs~dg~V~iws~---~~~~l~~s~~~~~~I 496 (524)
T KOG0273|consen 421 MNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSV-AFSPNGRYLASGSLDGCVHIWST---KTGKLVKSYQGTGGI 496 (524)
T ss_pred CCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEE-EecCCCcEEEecCCCCeeEeccc---cchheeEeecCCCeE
Confidence 6667778899999999999999999999 667898875 66677777766651 11111112 22334555566666
Q ss_pred e---eeccccC
Q 033675 106 F---TNFRGNL 113 (114)
Q Consensus 106 ~---~~~~~~~ 113 (114)
| -|++||.
T Consensus 497 fel~Wn~~G~k 507 (524)
T KOG0273|consen 497 FELCWNAAGDK 507 (524)
T ss_pred EEEEEcCCCCE
Confidence 3 3666664
No 94
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=34.40 E-value=1.9e+02 Score=21.32 Aligned_cols=54 Identities=15% Similarity=0.285 Sum_probs=34.5
Q ss_pred CCCCCceEEEe---eCCeEEEEeCCCCeeeEEeecCCCeeeeeecC-CCCceeeeCCcce
Q 033675 27 PESGDLALVAT---LNGTVHLVDTKRGESRWSFSMGKPIYSSFTRN-DPDFYVDVGEDWK 82 (114)
Q Consensus 27 ~~~~~taLVat---lDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~-~~~~fidcgdDW~ 82 (114)
+|.....++|+ ++|.|.++|..+.+++=.+...... ..+-+ +..+++-+.-.|+
T Consensus 109 sP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~~t--~~~WsPdGr~~~ta~t~~r 166 (194)
T PF08662_consen 109 SPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSDAT--DVEWSPDGRYLATATTSPR 166 (194)
T ss_pred CCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCcEE--EEEEcCCCCEEEEEEeccc
Confidence 56667777775 4588999999999988776655432 22333 3345666655543
No 95
>PTZ00421 coronin; Provisional
Probab=33.83 E-value=3.2e+02 Score=23.71 Aligned_cols=65 Identities=12% Similarity=0.048 Sum_probs=38.9
Q ss_pred CCCceEEEeeCCeEEEEeCCCCe-------eeEEeec-CCCeeeeeecCCC--CceeeeCCcceEeeeecccccee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGE-------SRWSFSM-GKPIYSSFTRNDP--DFYVDVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r-------~~WSFSt-GsPIYSSYqA~~~--~~fidcgdDW~LY~h~~~~GK~k 94 (114)
.+...+.|+.||+|.+|+...+. ++-.+.. ..++.+ ...++. ..++-++.|=.+..-+..-|+..
T Consensus 87 d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~-l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~ 161 (493)
T PTZ00421 87 DPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGI-VSFHPSAMNVLASAGADMVVNVWDVERGKAV 161 (493)
T ss_pred CCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEE-EEeCcCCCCEEEEEeCCCEEEEEECCCCeEE
Confidence 34567778999999999876652 3333322 122322 233332 45777788877777776666653
No 96
>COG4993 Gcd Glucose dehydrogenase [Carbohydrate transport and metabolism]
Probab=33.73 E-value=56 Score=31.21 Aligned_cols=34 Identities=18% Similarity=0.361 Sum_probs=29.0
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI 62 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI 62 (114)
-+.-.+.-+.|.++...|.++||+.|+|..+.-.
T Consensus 271 c~~rIflpt~DarlIALdA~tGkvc~~Fa~~Ga~ 304 (773)
T COG4993 271 CPRRIFLPTADARLIALDADTGKVCWSFANKGAL 304 (773)
T ss_pred CceeEEeecCCceEEEEeCCCCcEeheeccCcee
Confidence 3445789999999999999999999999987643
No 97
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=33.61 E-value=59 Score=26.23 Aligned_cols=38 Identities=26% Similarity=0.405 Sum_probs=28.2
Q ss_pred CCCceEEEeeC-CeEEEEeCCCCeeeEEeecCCCeeeeeec
Q 033675 29 SGDLALVATLN-GTVHLVDTKRGESRWSFSMGKPIYSSFTR 68 (114)
Q Consensus 29 ~~~taLVatlD-GTiYLVd~~s~r~~WSFStGsPIYSSYqA 68 (114)
+..-.||.+++ -+||.++..+|+++|.. |+|-.+.|..
T Consensus 153 ~~G~yLiS~R~~~~i~~I~~~tG~I~W~l--gG~~~~df~~ 191 (299)
T PF14269_consen 153 DDGDYLISSRNTSTIYKIDPSTGKIIWRL--GGKRNSDFTL 191 (299)
T ss_pred CCccEEEEecccCEEEEEECCCCcEEEEe--CCCCCCcccc
Confidence 44456888877 58999999999999998 5553455554
No 98
>PF13933 HRXXH: Putative peptidase family
Probab=33.06 E-value=30 Score=28.71 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=11.2
Q ss_pred HHHHHHHHHhhcCCCC
Q 033675 6 IFLLLLTVILSSLPPT 21 (114)
Q Consensus 6 i~ll~~~v~l~s~p~~ 21 (114)
|||++.+++.+++|-.
T Consensus 1 ~l~~~~~~~a~~~~~~ 16 (245)
T PF13933_consen 1 ILLLLSAALAAALPAS 16 (245)
T ss_pred ChhHHHHHHHhhcccc
Confidence 4666777777777764
No 99
>PRK04792 tolB translocation protein TolB; Provisional
Probab=32.46 E-value=2.9e+02 Score=22.93 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=35.0
Q ss_pred CceEEEeeCCe--EEEEeCCCCeeeEEeecCCCeeeeeecCCC-Cc-ee--eeCCcceEeeeeccccceee
Q 033675 31 DLALVATLNGT--VHLVDTKRGESRWSFSMGKPIYSSFTRNDP-DF-YV--DVGEDWKLYFHRKGIGKMKD 95 (114)
Q Consensus 31 ~taLVatlDGT--iYLVd~~s~r~~WSFStGsPIYSSYqA~~~-~~-fi--dcgdDW~LY~h~~~~GK~kl 95 (114)
.++++++.||+ ||+++..++++. ....+..+..+.+-++. .. ++ +-+...++|..+..-|+.+.
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~ 344 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT-RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR 344 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 35566777885 999988877642 33333323333232322 21 22 22345788888877677643
No 100
>PF10401 IRF-3: Interferon-regulatory factor 3; InterPro: IPR019471 This is the interferon-regulatory factor 3 chain of the hetero-dimeric structure which also contains the shorter chain CREB-binding protein. These two subunits make up the DRAF1 (double-stranded RNA-activated factor 1). Viral dsRNA produced during viral transcription or replication leads to the activation of DRAF1. The DNA-binding specificity of DRAF1 correlates with transcriptional induction of ISG (interferon-alpha, beta-stimulated gene). IRF-3 pre-exists in the cytoplasm of uninfected cells and translocates to the nucleus following viral infection. Translocation of IRF-3 is accompanied by an increase in serine and threonine phosphorylation, and association with the CREB coactivator occurs only after infection. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1J2F_A 1QWT_A 3A77_B 1ZOQ_A 3DSH_A.
Probab=31.58 E-value=1.1e+02 Score=22.45 Aligned_cols=33 Identities=12% Similarity=-0.062 Sum_probs=24.3
Q ss_pred CceEEEeeCCeEEEEeCCCCeeeEEeecCCCee
Q 033675 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPIY 63 (114)
Q Consensus 31 ~taLVatlDGTiYLVd~~s~r~~WSFStGsPIY 63 (114)
...++...++.||..-...+++.|+.+......
T Consensus 74 rGl~L~~~~~gI~akRlc~~~Vfw~g~~~~~~~ 106 (180)
T PF10401_consen 74 RGLLLWSNPQGIYAKRLCQCRVFWSGPEAPPSD 106 (180)
T ss_dssp T-EEEEEETTEEEEEE-SSS-EEEECCTSS-S-
T ss_pred CcEEEEEeCCEEEEEecCCceEEEEcCCccCCC
Confidence 467778888899999999999999998877544
No 101
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=31.46 E-value=2.7e+02 Score=24.49 Aligned_cols=56 Identities=29% Similarity=0.462 Sum_probs=31.7
Q ss_pred CchhhHHHHHHHHHhh----cC--CCCCCCCCCCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCee
Q 033675 1 MRRSLIFLLLLTVILS----SL--PPTSPRASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIY 63 (114)
Q Consensus 1 mrr~li~ll~~~v~l~----s~--p~~s~~~~~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIY 63 (114)
|||.+++.+++..+.+ ++ |+..+..-+++++.++=+..++. .=...|....|==.|
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~AF~~~~~~~~~-------~l~l~~~Ia~gyYLY 62 (571)
T PRK00293 1 MKRLLTLILLLCSTLAFASAGLFDAPGRSDFLPVDQAFAFDFQQQGD-------QLNLRWQIADGYYLY 62 (571)
T ss_pred CchHHHHHHHHHHHHHhhhhccccCCCCCCCCChhhcceeEEEEcCC-------EEEEEEEECCCeEEE
Confidence 7888877665555444 22 22333344556666666654331 124678888776565
No 102
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=31.07 E-value=1.2e+02 Score=27.07 Aligned_cols=69 Identities=17% Similarity=0.171 Sum_probs=0.0
Q ss_pred CCCCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeecccccee
Q 033675 25 ASPESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 25 ~~~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK~k 94 (114)
|++-+=.++-+|++||||-++|..+-+++=++---.++-.--=.+ .+...-|--|=.+|.-+.+-|..+
T Consensus 293 ~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~ 361 (399)
T KOG0296|consen 293 PSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK 361 (399)
T ss_pred ccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceE
No 103
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=30.66 E-value=3.3e+02 Score=22.99 Aligned_cols=65 Identities=12% Similarity=0.140 Sum_probs=50.7
Q ss_pred CCCCCceEEEee--CCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccccc
Q 033675 27 PESGDLALVATL--NGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGK 92 (114)
Q Consensus 27 ~~~~~taLVatl--DGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK 92 (114)
++..+..+|+.. +..|-+||..++++.=....+. -+.-|-.++.+|++-|+|-=.+++-..--||
T Consensus 113 s~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~ 179 (352)
T TIGR02658 113 TPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTANDTFFMHCRDGSLAKVGYGTKGN 179 (352)
T ss_pred CCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecCCccEEEeecCceEEEEecCCCc
Confidence 445667787764 5889999999999999999876 4567788899999999998777755544444
No 104
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=30.40 E-value=3.2e+02 Score=22.75 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=45.7
Q ss_pred CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCC-CeeeeeecCCCCceeeeCCcceEeeeeccccc
Q 033675 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDPDFYVDVGEDWKLYFHRKGIGK 92 (114)
Q Consensus 28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGs-PIYSSYqA~~~~~fidcgdDW~LY~h~~~~GK 92 (114)
+.....+.|+.||||.++|..+|++.=.+..-+ +|-+...-++...++.-..|=.+.+=|.+-|.
T Consensus 256 p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~ 321 (456)
T KOG0266|consen 256 PDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGS 321 (456)
T ss_pred CCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCc
Confidence 345788999999999999999988876666655 55444222233344444457778888888888
No 105
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=30.37 E-value=57 Score=22.03 Aligned_cols=17 Identities=18% Similarity=0.509 Sum_probs=13.9
Q ss_pred EEEEeCCCCeeeEEeec
Q 033675 42 VHLVDTKRGESRWSFSM 58 (114)
Q Consensus 42 iYLVd~~s~r~~WSFSt 58 (114)
|.++|..+++++|.=..
T Consensus 107 i~i~D~~~~~~vW~g~a 123 (151)
T PF13590_consen 107 IDIIDAKTNKVVWRGTA 123 (151)
T ss_pred EEEEeCCCCCEEEEEEE
Confidence 56789999999998554
No 106
>PRK10781 rcsF outer membrane lipoprotein; Reviewed
Probab=30.12 E-value=71 Score=24.19 Aligned_cols=13 Identities=46% Similarity=0.493 Sum_probs=8.3
Q ss_pred CchhhHHHHHHHH
Q 033675 1 MRRSLIFLLLLTV 13 (114)
Q Consensus 1 mrr~li~ll~~~v 13 (114)
||+.+++||.++.
T Consensus 1 MR~l~~~LL~L~L 13 (133)
T PRK10781 1 MRALPICLLALML 13 (133)
T ss_pred CchHHHHHHHHHH
Confidence 7887776655443
No 107
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=30.06 E-value=1.2e+02 Score=27.30 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=58.2
Q ss_pred ceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCC--CceeeeCCcceEeeeeccccce--eeecccCC
Q 033675 32 LALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDP--DFYVDVGEDWKLYFHRKGIGKM--KDIMKSTT 101 (114)
Q Consensus 32 taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~--~~fidcgdDW~LY~h~~~~GK~--kl~~~s~~ 101 (114)
...+||---.|.+||.....|.=||+.|-+.-++...||. +..--|+.|=.++.-|-+-++- |.++...|
T Consensus 159 ~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT 232 (433)
T KOG0268|consen 159 NSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT 232 (433)
T ss_pred cccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc
Confidence 4567777778999999999999999999999999999866 5577888999999999998876 55555443
No 108
>PRK14864 putative biofilm stress and motility protein A; Provisional
Probab=29.71 E-value=73 Score=23.03 Aligned_cols=11 Identities=55% Similarity=0.625 Sum_probs=5.6
Q ss_pred CchhhHHHHHH
Q 033675 1 MRRSLIFLLLL 11 (114)
Q Consensus 1 mrr~li~ll~~ 11 (114)
|||.+.+++-+
T Consensus 5 mk~~~~l~~~l 15 (104)
T PRK14864 5 MRRFASLLLTL 15 (104)
T ss_pred HHHHHHHHHHH
Confidence 67755444433
No 109
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=29.41 E-value=1e+02 Score=26.56 Aligned_cols=32 Identities=16% Similarity=0.264 Sum_probs=27.7
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEEeec
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSM 58 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFSt 58 (114)
.|.+...|.++-||+|++|+..+|++-=+|-.
T Consensus 241 tPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 241 TPDSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCCCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 56888899999999999999999988777765
No 110
>PF01453 B_lectin: D-mannose binding lectin; InterPro: IPR001480 A bulb lectin super-family (Amaryllidaceae, Orchidaceae and Aliaceae) contains a ~115-residue-long domain whose overall three dimensional fold is very similar to that of [, ]: Dictyostelium discoideum comitin, an actin binding protein Curculigo latifolia curculin, a sweet tasting and taste-modifying protein This domain generally binds mannose, but in at least one protein, curculin, it is apparently devoid of mannose-binding activity. Each bulb-type lectin domain consists of three sequential beta-sheet subdomains (I, II, III) that are inter-related by pseudo three-fold symmetry. The three subdomains are flat four-stranded, antiparrallel beta-sheets. Together they form a 12-stranded beta-barrel in which the barrel axis coincides with the pseudo 3-fold axis.; GO: 0005529 sugar binding; PDB: 3M7H_A 3M7J_B 3MEZ_D 1DLP_A 1BWU_D 1KJ1_A 1B2P_A 1XD6_A 2DPF_C 2D04_B ....
Probab=29.30 E-value=1.2e+02 Score=20.91 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=22.9
Q ss_pred CCceEEEeeCCeEEEEeCCCCeeeEEe-ecCC
Q 033675 30 GDLALVATLNGTVHLVDTKRGESRWSF-SMGK 60 (114)
Q Consensus 30 ~~taLVatlDGTiYLVd~~s~r~~WSF-StGs 60 (114)
....|.-.-||.+.|.+.. ++++|+= .+.+
T Consensus 19 ~~~~L~l~~dGnLvl~~~~-~~~iWss~~t~~ 49 (114)
T PF01453_consen 19 GNYTLILQSDGNLVLYDSN-GSVIWSSNNTSG 49 (114)
T ss_dssp TTEEEEEETTSEEEEEETT-TEEEEE--S-TT
T ss_pred ccccceECCCCeEEEEcCC-CCEEEEecccCC
Confidence 5678999999999999877 7779998 4443
No 111
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=28.46 E-value=2.7e+02 Score=24.37 Aligned_cols=65 Identities=20% Similarity=0.248 Sum_probs=51.0
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeee-cccccee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHR-KGIGKMK 94 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~-~~~GK~k 94 (114)
+..+-|-++-||||=|||--+|+.-=|...++|.-|. .....+-+|-.-+.=..-+++ ++||+.|
T Consensus 154 eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSl-Evs~dG~ilTia~gssV~Fwdaksf~~lK 219 (334)
T KOG0278|consen 154 EDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSL-EVSQDGRILTIAYGSSVKFWDAKSFGLLK 219 (334)
T ss_pred cCceEEeeccCCceEEEEeccCcEEEEEecCCCCcce-eeccCCCEEEEecCceeEEecccccccee
Confidence 6778888899999999999999999999999998765 555555566666666666666 5677764
No 112
>PF00695 vMSA: Major surface antigen from hepadnavirus; InterPro: IPR000349 This family contains the major surface antigens of the hepatitus viruses (Hepadnaviridae). The protein is most likely required for an early step of the life cycle involving entry or uncoating of virus particles.; GO: 0016032 viral reproduction; PDB: 1KCR_P 1WZ4_A 2EH8_P 1KC5_P.
Probab=28.23 E-value=19 Score=31.51 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=0.0
Q ss_pred CchhhHHHHHHHHHhh
Q 033675 1 MRRSLIFLLLLTVILS 16 (114)
Q Consensus 1 mrr~li~ll~~~v~l~ 16 (114)
+||.+|||+.++|.++
T Consensus 222 lr~fiifl~ill~~~~ 237 (364)
T PF00695_consen 222 LRRFIIFLFILLLCLI 237 (364)
T ss_dssp ----------------
T ss_pred hhhHHHHHHHHHHHHH
Confidence 5999999998888776
No 113
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=27.56 E-value=94 Score=19.81 Aligned_cols=29 Identities=31% Similarity=0.455 Sum_probs=21.0
Q ss_pred ceEEEeeCCeEEEEeCCCCeeeEEeecCCC
Q 033675 32 LALVATLNGTVHLVDTKRGESRWSFSMGKP 61 (114)
Q Consensus 32 taLVatlDGTiYLVd~~s~r~~WSFStGsP 61 (114)
.++|-.-+|.|.|+...... .|.|-.|.-
T Consensus 4 ~~~i~~~~~~vLL~~r~~~~-~w~~PgG~v 32 (120)
T cd04680 4 RAVVTDADGRVLLVRHTYGP-GWYLPGGGL 32 (120)
T ss_pred EEEEECCCCeEEEEEECCCC-cEeCCCCcC
Confidence 45666678999999765443 999987753
No 114
>PRK11669 pbpG D-alanyl-D-alanine endopeptidase; Provisional
Probab=27.28 E-value=1.2e+02 Score=25.15 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=20.3
Q ss_pred CeEEEEeCCCCeeeEEeecCCCee
Q 033675 40 GTVHLVDTKRGESRWSFSMGKPIY 63 (114)
Q Consensus 40 GTiYLVd~~s~r~~WSFStGsPIY 63 (114)
...+++|.++|+++++-+...+++
T Consensus 42 ~aaiv~D~~tG~vL~~kN~d~~~~ 65 (306)
T PRK11669 42 GSAMVVDLNTNKVIYSSNPDLVVP 65 (306)
T ss_pred cEEEEEECCCCcEEEeECcCCCcC
Confidence 456677999999999999988877
No 115
>PF08525 OapA_N: Opacity-associated protein A N-terminal motif; InterPro: IPR013731 This domain is found in the Haemophilus influenzae opacity-associated protein (OapA). It is required for efficient nasopharyngeal mucosal colonisation, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [, ]. This motif occurs at the N terminus of these proteins. It contains a conserved histidine followed by a run of hydrophobic residues. Many of the proteins in this entry are unassigned peptidases belonging to MEROPS peptidase family M23B.
Probab=27.22 E-value=63 Score=18.48 Aligned_cols=19 Identities=37% Similarity=0.539 Sum_probs=13.0
Q ss_pred chhhHHHHHHHHHhhcCCC
Q 033675 2 RRSLIFLLLLTVILSSLPP 20 (114)
Q Consensus 2 rr~li~ll~~~v~l~s~p~ 20 (114)
||.++.+..+++++.=+|.
T Consensus 11 r~~l~~l~~v~l~ll~~Ps 29 (30)
T PF08525_consen 11 RRALIALSAVVLVLLLWPS 29 (30)
T ss_pred HHHHHHHHHHHHHHHhccC
Confidence 6677777777777766664
No 116
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=26.84 E-value=1e+02 Score=21.22 Aligned_cols=41 Identities=20% Similarity=0.382 Sum_probs=22.6
Q ss_pred eEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeee
Q 033675 41 TVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHR 87 (114)
Q Consensus 41 TiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~ 87 (114)
-|||.|..+|+ .||-.- .|. ..+...+=+..|.+..-|.|.
T Consensus 6 ~~YirD~~~g~-~wS~t~-~P~----~~~~~~y~~~~g~g~~~f~~~ 46 (110)
T PF06165_consen 6 FIYIRDEDSGE-VWSPTP-QPV----RDPPDEYEVRHGFGYTRFERE 46 (110)
T ss_dssp EEEEEETTTTE-EEETTS-TTT----T--TSEEEEEEESSEEEEEEE
T ss_pred EEEEEECCCCC-EECCCc-ccC----cCCCCcEEEEECCCeEEEEEE
Confidence 48999999998 687532 222 222223335555555555443
No 117
>PRK10949 protease 4; Provisional
Probab=26.82 E-value=87 Score=28.34 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=18.7
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCe
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGE 51 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r 51 (114)
..+.+.+|+-.++|+| ||+.+..
T Consensus 52 ~~~~~~vL~ldl~G~l--ve~~~~~ 74 (618)
T PRK10949 52 ETASRGALLLDISGVI--VDKPSSS 74 (618)
T ss_pred cCCCCeEEEEECCCcc--cCCCCCC
Confidence 3567899999999987 8877754
No 118
>PRK10793 D-alanyl-D-alanine carboxypeptidase fraction A; Provisional
Probab=26.78 E-value=1.1e+02 Score=26.17 Aligned_cols=23 Identities=13% Similarity=-0.000 Sum_probs=20.1
Q ss_pred eEEEEeCCCCeeeEEeecCCCee
Q 033675 41 TVHLVDTKRGESRWSFSMGKPIY 63 (114)
Q Consensus 41 TiYLVd~~s~r~~WSFStGsPIY 63 (114)
.-+++|.+||+++|+-+...+++
T Consensus 48 sail~D~~tG~vL~~knad~~~~ 70 (403)
T PRK10793 48 SYILIDYNSGKVLAEQNADVRRD 70 (403)
T ss_pred EEEEEECCCCcEehhcCcCCCcC
Confidence 34678999999999999999987
No 119
>PF05404 TRAP-delta: Translocon-associated protein, delta subunit precursor (TRAP-delta); InterPro: IPR008855 This family consists of several eukaryotic translocon-associated protein, delta subunit precursors (TRAP-delta or SSR-delta). The exact function of this protein is unknown [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=26.68 E-value=3e+02 Score=21.64 Aligned_cols=31 Identities=26% Similarity=0.460 Sum_probs=22.3
Q ss_pred CCCceEEEeeCCeEEEE----eCCCCeeeEEeecC
Q 033675 29 SGDLALVATLNGTVHLV----DTKRGESRWSFSMG 59 (114)
Q Consensus 29 ~~~taLVatlDGTiYLV----d~~s~r~~WSFStG 59 (114)
..+..|.|-+||.++-| |.++=.+-|+...-
T Consensus 55 ~~~~~LyAeV~Gk~~PVar~~~~nkYQVSW~~e~k 89 (167)
T PF05404_consen 55 AKNISLYAEVNGKILPVARSGDTNKYQVSWTEEHK 89 (167)
T ss_pred CcCccEEEEECCEEEEEEEcCCCCceEEEEEechh
Confidence 45688999999999998 33444666766443
No 120
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=26.39 E-value=99 Score=24.14 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=18.1
Q ss_pred CCCceEEEeeC--CeEEEEeCCCCeee
Q 033675 29 SGDLALVATLN--GTVHLVDTKRGESR 53 (114)
Q Consensus 29 ~~~taLVatlD--GTiYLVd~~s~r~~ 53 (114)
.+.|.++|+.| +.|--|++.||++.
T Consensus 125 q~pT~FIg~t~~e~~lisv~N~sGeV~ 151 (176)
T PF07348_consen 125 QPPTLFIGTTDSEDMLISVDNESGEVI 151 (176)
T ss_dssp ---EEEEEEESSTTEEEEEETTT--EE
T ss_pred cCCceeEEEecCCCcEEEEECCCCeEE
Confidence 45789999998 88889999999985
No 121
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=25.98 E-value=91 Score=24.58 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=15.0
Q ss_pred CCCceEEEeeCCeEEEEeCCCC
Q 033675 29 SGDLALVATLNGTVHLVDTKRG 50 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~ 50 (114)
++..+++-++|||| +|+..+
T Consensus 61 ~~p~aViFDlDgTL--lDSs~~ 80 (237)
T TIGR01672 61 RPPIAVSFDIDDTV--LFSSPG 80 (237)
T ss_pred CCCeEEEEeCCCcc--ccCcHH
Confidence 56779999999994 555543
No 122
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=25.64 E-value=3.4e+02 Score=24.73 Aligned_cols=65 Identities=25% Similarity=0.311 Sum_probs=50.6
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCe---eeeeecCCCCceeee-CCcceEeeeecccccee
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPI---YSSFTRNDPDFYVDV-GEDWKLYFHRKGIGKMK 94 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPI---YSSYqA~~~~~fidc-gdDW~LY~h~~~~GK~k 94 (114)
.+.--+|.-...|||++.. .|.+.=|||+|.-- +-++..+|.+-+|=| |+|-.||--..-.||..
T Consensus 404 npeh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE 472 (508)
T KOG0275|consen 404 NPEHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLE 472 (508)
T ss_pred CCceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCcee
Confidence 4556678889999999865 57888899999753 334456677666665 99999999999999984
No 123
>PF06577 DUF1134: Protein of unknown function (DUF1134); InterPro: IPR008325 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=25.63 E-value=84 Score=24.84 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=25.1
Q ss_pred CCCCceEEEee---CCeEEEEeCCCCeeeEE
Q 033675 28 ESGDLALVATL---NGTVHLVDTKRGESRWS 55 (114)
Q Consensus 28 ~~~~taLVatl---DGTiYLVd~~s~r~~WS 55 (114)
+|-..|+++.+ .||+|.......++.|+
T Consensus 44 ~E~sGA~~~GlrYGeG~L~~k~~g~~~vyWq 74 (160)
T PF06577_consen 44 EEASGAFVVGLRYGEGTLYTKNAGQHKVYWQ 74 (160)
T ss_pred eeccccEEEEEEecccEEEEcCCCeeEEEEe
Confidence 47788999988 79999999999999997
No 124
>PRK06132 hypothetical protein; Provisional
Probab=25.41 E-value=2.7e+02 Score=23.85 Aligned_cols=30 Identities=17% Similarity=0.052 Sum_probs=20.8
Q ss_pred ceEEEeeCCeEEEEeCCCCeeeEEeecCCC
Q 033675 32 LALVATLNGTVHLVDTKRGESRWSFSMGKP 61 (114)
Q Consensus 32 taLVatlDGTiYLVd~~s~r~~WSFStGsP 61 (114)
...|-.-+-++|+.+.+.--..|..|+|.+
T Consensus 62 ~IvVsl~~qrL~Vy~nG~lV~~~pVStG~~ 91 (359)
T PRK06132 62 VIVVSLDEQRLYVYDNGILIAVSTVSTGKR 91 (359)
T ss_pred EEEEECCCCEEEEEECCEEEEEEEEecccC
Confidence 344444556888888776666677788887
No 125
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.20 E-value=1.1e+02 Score=23.60 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=24.4
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEe
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSF 56 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSF 56 (114)
.....++.|-+|.+|.||..+++....=
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~ 48 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPP 48 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCC
Confidence 6777999999999999999999987654
No 126
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=24.98 E-value=1.6e+02 Score=28.40 Aligned_cols=40 Identities=25% Similarity=0.390 Sum_probs=35.8
Q ss_pred CCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeee
Q 033675 28 ESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFT 67 (114)
Q Consensus 28 ~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYq 67 (114)
++.....|.++||+|=++|..-++.+=.|..+-|++++.-
T Consensus 70 ~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~ 109 (792)
T KOG1963|consen 70 ENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVY 109 (792)
T ss_pred ccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEe
Confidence 3457788999999999999999999999999999997764
No 127
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=24.95 E-value=34 Score=28.93 Aligned_cols=45 Identities=27% Similarity=0.527 Sum_probs=23.6
Q ss_pred ecCCCeeeeeecCCC------------CceeeeCCcceEeeeeccccceeeecccCCCcee
Q 033675 57 SMGKPIYSSFTRNDP------------DFYVDVGEDWKLYFHRKGIGKMKDIMKSTTPNCY 105 (114)
Q Consensus 57 StGsPIYSSYqA~~~------------~~fidcgdDW~LY~h~~~~GK~kl~~~s~~~~~~ 105 (114)
++|.||||.|--.+. ++|-+-+|.-+ ....|+.++-.....|-++
T Consensus 19 ~AGKPIysr~G~e~~l~~~~g~~~aiiS~~~~~~d~l~----~i~~~~~~ivfl~r~pl~l 75 (415)
T PF03164_consen 19 SAGKPIYSRYGDEDKLSSLMGVIQAIISFFQSNGDELR----SIRAGDHRIVFLNRGPLIL 75 (415)
T ss_pred CCCceeEEecCChHHHHHHHHHHHHHHHHHHhCCCcEE----EEEeCCEEEEEEecCCEEE
Confidence 468888888822211 34444444433 2234556665555555444
No 128
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=24.93 E-value=1.1e+02 Score=21.78 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=24.3
Q ss_pred CceEEEeeCCeEEEEeCCCCeeeEEeecCCCe
Q 033675 31 DLALVATLNGTVHLVDTKRGESRWSFSMGKPI 62 (114)
Q Consensus 31 ~taLVatlDGTiYLVd~~s~r~~WSFStGsPI 62 (114)
..++|..-||.|.|+......-.|++..|..-
T Consensus 11 v~~~i~~~~g~vLL~~r~~~~~~w~~P~G~~~ 42 (156)
T PRK00714 11 VGIILLNRQGQVFWGRRIGQGHSWQFPQGGID 42 (156)
T ss_pred EEEEEEecCCEEEEEEEcCCCCeEECCcccCC
Confidence 34667777999999987655578999988743
No 129
>cd00028 B_lectin Bulb-type mannose-specific lectin. The domain contains a three-fold internal repeat (beta-prism architecture). The consensus sequence motif QXDXNXVXY is involved in alpha-D-mannose recognition. Lectins are carbohydrate-binding proteins which specifically recognize diverse carbohydrates and mediate a wide variety of biological processes, such as cell-cell and host-pathogen interactions, serum glycoprotein turnover, and innate immune responses.
Probab=24.25 E-value=2.3e+02 Score=19.01 Aligned_cols=30 Identities=20% Similarity=0.378 Sum_probs=19.9
Q ss_pred CCceEEEeeCCeEEEEeCCCCeeeEEeecCC
Q 033675 30 GDLALVATLNGTVHLVDTKRGESRWSFSMGK 60 (114)
Q Consensus 30 ~~taLVatlDGTiYLVd~~s~r~~WSFStGs 60 (114)
....|+-.-||.+++.+. .+.++|+=.+.+
T Consensus 55 ~~~~l~l~~dGnLvl~~~-~g~~vW~S~~~~ 84 (116)
T cd00028 55 SSCTLTLQSDGNLVIYDG-SGTVVWSSNTTR 84 (116)
T ss_pred CCEEEEEecCCCeEEEcC-CCcEEEEecccC
Confidence 445566677888887765 457888755543
No 130
>PRK04968 SecY interacting protein Syd; Provisional
Probab=24.20 E-value=1.2e+02 Score=23.92 Aligned_cols=25 Identities=24% Similarity=0.113 Sum_probs=21.0
Q ss_pred CCCceEEEeeC--CeEEEEeCCCCeee
Q 033675 29 SGDLALVATLN--GTVHLVDTKRGESR 53 (114)
Q Consensus 29 ~~~taLVatlD--GTiYLVd~~s~r~~ 53 (114)
.+.|.|+|+.| +.|--|++.||++.
T Consensus 126 ~~PT~FIg~~~~e~~~isv~N~sGeV~ 152 (181)
T PRK04968 126 LPPTLFIATTDEEDEVISVCNLSGEVI 152 (181)
T ss_pred CCCcEEEEEecCCCeEEEEECCCCeEE
Confidence 45689999995 88888899999985
No 131
>PF07790 DUF1628: Protein of unknown function (DUF1628); InterPro: IPR012859 The sequences making up this family are derived from hypothetical proteins of unknown function expressed by various archaeal species. The region in question is approximately 160 residues long.
Probab=24.18 E-value=2e+02 Score=18.38 Aligned_cols=11 Identities=55% Similarity=0.890 Sum_probs=6.2
Q ss_pred HHHHHHHHHhh
Q 033675 6 IFLLLLTVILS 16 (114)
Q Consensus 6 i~ll~~~v~l~ 16 (114)
++|+.++|+|.
T Consensus 10 iLliaitVila 20 (80)
T PF07790_consen 10 ILLIAITVILA 20 (80)
T ss_pred HHHHHHHHHHH
Confidence 45555566554
No 132
>PF02393 US22: US22 like; InterPro: IPR003360 Herpesviruses are large and complex DNA viruses, widely found in nature. Human cytomegalovirus (HCMV), an important human pathogen, defines the betaherpesvirus family. Mouse cytomegalovirus (MCMV) and rat cytomegalovirus serve as biological model systems for HCMV. HCMV, MCMV, and rat CMV display the largest genomes among the herpesviruses and are essentially co-linear over the central 180 kb of the 230-kb genomes. Betaherpesviruses, which include the CMVs as well as human herpesviruses 6 and 7, differ from alpha- and gammaherpesviruses by the presence of additional gene families such as the US22 gene family, which are mainly clustered at the ends of the genome. The US22 family was first described in HCMV. This gene family comprises 12 members in both HCMV and MCMV and 11 in rat CMV []. Members of the US22 gene family are characterised by stretches of hydrophobic and charged residues as well as up to four conserved sequence motifs which are specific for betaherpesviruses. Motif I differs between the HCMV US and UL family members []. Motifs I and II have consensus sequences, while motifs III and IV are less well defined but have stretches of non-polar residues [, ]. Members of this gene family are widely divergent in function and their involvement in viral replication []. This entry contains US22 family members from the Cytomegalovirus, Muromegalovirus and the Roseolovirus taxonomic groups. The name sake of this family US22 is an early nuclear protein that is secreted from cells []. The US22 family may have a role in virus replication and pathogenesis [].
Probab=23.55 E-value=2e+02 Score=19.09 Aligned_cols=25 Identities=16% Similarity=0.134 Sum_probs=21.2
Q ss_pred CCCCceEEEeeCCeEEEEeCCCCee
Q 033675 28 ESGDLALVATLNGTVHLVDTKRGES 52 (114)
Q Consensus 28 ~~~~taLVatlDGTiYLVd~~s~r~ 52 (114)
......++.+-+|.||..|...+++
T Consensus 79 ~~~~~vvl~~~~G~Vy~yd~~~~~l 103 (125)
T PF02393_consen 79 FRDRLVVLVGESGRVYAYDPEDDRL 103 (125)
T ss_pred ccceEEEEEeCCCeEEEEEcCCCEE
Confidence 5678899999999999999877653
No 133
>TIGR02052 MerP mercuric transport protein periplasmic component. This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).
Probab=23.27 E-value=55 Score=19.06 Aligned_cols=19 Identities=32% Similarity=0.391 Sum_probs=11.7
Q ss_pred HHHHHHHHhhcCCCCCCCC
Q 033675 7 FLLLLTVILSSLPPTSPRA 25 (114)
Q Consensus 7 ~ll~~~v~l~s~p~~s~~~ 25 (114)
+-||++..+.++|.+.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (92)
T TIGR02052 5 ATLLALFVLTSLPAWAATQ 23 (92)
T ss_pred HHHHHHHHHhcchhhhcce
Confidence 3445555667788777653
No 134
>PRK00059 prsA peptidylprolyl isomerase; Provisional
Probab=23.14 E-value=1.2e+02 Score=23.75 Aligned_cols=14 Identities=36% Similarity=0.261 Sum_probs=10.1
Q ss_pred ceEEEeeCCeEEEE
Q 033675 32 LALVATLNGTVHLV 45 (114)
Q Consensus 32 taLVatlDGTiYLV 45 (114)
-..||.+||+.--.
T Consensus 35 ~~vvA~Vn~~~It~ 48 (336)
T PRK00059 35 KSTVATVNGEKITR 48 (336)
T ss_pred CCceEEECCEEeCH
Confidence 35789999986543
No 135
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=23.07 E-value=2.7e+02 Score=20.96 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=16.5
Q ss_pred CCCCceEEEeeCCeEEEEeCC
Q 033675 28 ESGDLALVATLNGTVHLVDTK 48 (114)
Q Consensus 28 ~~~~taLVatlDGTiYLVd~~ 48 (114)
++.+-++|+-.||+|-.++..
T Consensus 31 ~~~~~~ivSPaDG~v~~i~~~ 51 (189)
T TIGR00164 31 PQGPEAVLSPADGRIDVVERA 51 (189)
T ss_pred CCCCCEEEeCCCcEEEEEEee
Confidence 345667999999999888753
No 136
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=22.87 E-value=1.6e+02 Score=25.56 Aligned_cols=55 Identities=18% Similarity=0.241 Sum_probs=0.0
Q ss_pred CCCCCCCCCceEEEeeCCeEEEE----------eCCCCeeeEE-eecCCCeeeeeecCCCCceeeeCC
Q 033675 23 PRASPESGDLALVATLNGTVHLV----------DTKRGESRWS-FSMGKPIYSSFTRNDPDFYVDVGE 79 (114)
Q Consensus 23 ~~~~~~~~~taLVatlDGTiYLV----------d~~s~r~~WS-FStGsPIYSSYqA~~~~~fidcgd 79 (114)
.|+-++....-++|.++|+|.+. +.....++-. =..-.|||+---- .++.+.|||
T Consensus 15 ~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd 80 (325)
T KOG0649|consen 15 AQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD 80 (325)
T ss_pred HHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC
No 137
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.86 E-value=3.6e+02 Score=23.43 Aligned_cols=85 Identities=22% Similarity=0.342 Sum_probs=51.3
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeec-CCCeeeeeecC-CCCceeeeCCcceEeeeeccc-cceeeec--ccCCCc
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSM-GKPIYSSFTRN-DPDFYVDVGEDWKLYFHRKGI-GKMKDIM--KSTTPN 103 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFSt-GsPIYSSYqA~-~~~~fidcgdDW~LY~h~~~~-GK~kl~~--~s~~~~ 103 (114)
-....|+++|||||=|++.+.+...=.|.- ++-||..---| ..+-|.-|..|=-|=+-|.++ ||...++ ++..--
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~ 195 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILC 195 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEe
Confidence 345678899999999999999999988875 34455432112 335566666664443333332 6653222 234445
Q ss_pred eeeeeccccC
Q 033675 104 CYFTNFRGNL 113 (114)
Q Consensus 104 ~~~~~~~~~~ 113 (114)
|-+..|+-|+
T Consensus 196 cdw~ky~~~v 205 (311)
T KOG0277|consen 196 CDWSKYNHNV 205 (311)
T ss_pred ecccccCCcE
Confidence 6666666554
No 138
>KOG3358 consensus Uncharacterized secreted protein SDF2 (Stromal cell-derived factor 2), contains MIR domains [General function prediction only]
Probab=22.52 E-value=97 Score=25.53 Aligned_cols=51 Identities=22% Similarity=0.327 Sum_probs=37.1
Q ss_pred CeEEEEeCCCCeeeEEeecCCCeeee--eecCCCCceeeeCCcceEeeeeccc
Q 033675 40 GTVHLVDTKRGESRWSFSMGKPIYSS--FTRNDPDFYVDVGEDWKLYFHRKGI 90 (114)
Q Consensus 40 GTiYLVd~~s~r~~WSFStGsPIYSS--YqA~~~~~fidcgdDW~LY~h~~~~ 90 (114)
-||=|.+..+||-+=|-.=-||+.-- ..|...|+-=|.||||++...+++.
T Consensus 92 ~~iRL~H~~TgknLHSHhf~sPlSgnqEVSafG~dgegDtgD~Wtvic~g~~W 144 (211)
T KOG3358|consen 92 QTIRLTHLKTGKNLHSHHFTSPLSGNQEVSAFGEDGEGDTGDHWTVICNGKTW 144 (211)
T ss_pred CeEEEEEeecccchhhcccCCCCCCCeeEEeecccCCCCcccceEEEeCCccc
Confidence 36778888888888777777777622 2344667788999999998776543
No 139
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=22.41 E-value=69 Score=25.71 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=17.6
Q ss_pred CceEEEeeCCeEEEEeCCCCeeeEEe
Q 033675 31 DLALVATLNGTVHLVDTKRGESRWSF 56 (114)
Q Consensus 31 ~taLVatlDGTiYLVd~~s~r~~WSF 56 (114)
.+.+.=..-|-|||||. .||++|-=
T Consensus 209 ~Lgi~N~~~GYvyLVD~-~grIRWag 233 (252)
T PF05176_consen 209 ALGINNSYVGYVYLVDP-NGRIRWAG 233 (252)
T ss_pred HhCCCCCCcCeEEEECC-CCeEEeCc
Confidence 33344445588999996 59999963
No 140
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=22.33 E-value=46 Score=23.46 Aligned_cols=9 Identities=22% Similarity=0.398 Sum_probs=5.3
Q ss_pred eeCCeEEEE
Q 033675 37 TLNGTVHLV 45 (114)
Q Consensus 37 tlDGTiYLV 45 (114)
-+.||=+++
T Consensus 33 P~~gt~w~~ 41 (130)
T PF12273_consen 33 PIYGTRWMA 41 (130)
T ss_pred CcCCceecC
Confidence 455666666
No 141
>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet. This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....
Probab=22.18 E-value=1e+02 Score=17.01 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=15.1
Q ss_pred CCeEEEEeCCCCeeeEE
Q 033675 39 NGTVHLVDTKRGESRWS 55 (114)
Q Consensus 39 DGTiYLVd~~s~r~~WS 55 (114)
.|.+|.++..+++.-|.
T Consensus 13 ~g~~YY~N~~t~~s~W~ 29 (31)
T PF00397_consen 13 SGRPYYYNHETGESQWE 29 (31)
T ss_dssp TSEEEEEETTTTEEESS
T ss_pred CCCEEEEeCCCCCEEeC
Confidence 39999999999998884
No 142
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=21.78 E-value=1.2e+02 Score=26.81 Aligned_cols=63 Identities=13% Similarity=0.083 Sum_probs=43.3
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCC-CeeeeeecCCC--CceeeeCCcceEeeeecccc
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGK-PIYSSFTRNDP--DFYVDVGEDWKLYFHRKGIG 91 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGs-PIYSSYqA~~~--~~fidcgdDW~LY~h~~~~G 91 (114)
-+..-+-++-|+|+.++|..+++..|+...-- -.--..--||| -..+-||||=-+-+-|-+.-
T Consensus 182 Hdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 182 HDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred CccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCC
Confidence 56677778889999999999999999986532 11122334455 35789999965555555433
No 143
>PF11920 DUF3438: Protein of unknown function (DUF3438); InterPro: IPR021844 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=21.78 E-value=1.9e+02 Score=24.35 Aligned_cols=16 Identities=38% Similarity=0.542 Sum_probs=10.5
Q ss_pred CCCceEEEeeCCeEEEE
Q 033675 29 SGDLALVATLNGTVHLV 45 (114)
Q Consensus 29 ~~~taLVatlDGTiYLV 45 (114)
++.+- |-+..|+|||.
T Consensus 58 ~~kLr-vqS~gGavYL~ 73 (288)
T PF11920_consen 58 NGKLR-VQSAGGAVYLK 73 (288)
T ss_pred hhcEE-EeeeCCEEEEe
Confidence 44444 66678888876
No 144
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=21.77 E-value=96 Score=25.04 Aligned_cols=58 Identities=19% Similarity=0.346 Sum_probs=39.2
Q ss_pred eeCCeEEEEeCCCCeeeEEeecCCCee--eee-------------ecC-------------CCCceeeeCCcceEeeeec
Q 033675 37 TLNGTVHLVDTKRGESRWSFSMGKPIY--SSF-------------TRN-------------DPDFYVDVGEDWKLYFHRK 88 (114)
Q Consensus 37 tlDGTiYLVd~~s~r~~WSFStGsPIY--SSY-------------qA~-------------~~~~fidcgdDW~LY~h~~ 88 (114)
-+|+.++=||..+|+++|+.++=.=+. -++ ..+ +.+.+|.+-.-|.+|.=++
T Consensus 93 i~d~~~~EiDi~TgevlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~~G~yLiS~R~~~~i~~I~~ 172 (299)
T PF14269_consen 93 ILDDVFQEIDIETGEVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDDDGDYLISSRNTSTIYKIDP 172 (299)
T ss_pred EecceeEEeccCCCCEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecCCccEEEEecccCEEEEEEC
Confidence 478888999999999999887532221 111 000 1156788888888888887
Q ss_pred ccccee
Q 033675 89 GIGKMK 94 (114)
Q Consensus 89 ~~GK~k 94 (114)
.-|+.+
T Consensus 173 ~tG~I~ 178 (299)
T PF14269_consen 173 STGKII 178 (299)
T ss_pred CCCcEE
Confidence 777763
No 145
>PF01043 SecA_PP_bind: SecA preprotein cross-linking domain; InterPro: IPR011130 The SecA ATPase is involved in the insertion and retraction of preproteins through the plasma membrane. This domain has been found to cross-link to preproteins, thought to indicate a role in preprotein binding. The pre-protein cross-linking domain is comprised of two sub domains that are inserted within the ATPase domain [].; GO: 0017038 protein import, 0016020 membrane; PDB: 3DIN_B 3JUX_A 3IQY_A 2IBM_A 3DL8_A 3JV2_B 3IQM_A 1TF2_A 1TF5_A 1M74_A ....
Probab=21.44 E-value=65 Score=23.06 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=14.6
Q ss_pred eCCeEEEEeCCCCeee
Q 033675 38 LNGTVHLVDTKRGESR 53 (114)
Q Consensus 38 lDGTiYLVd~~s~r~~ 53 (114)
.||.|-+||..+||+.
T Consensus 84 ~dg~V~IVDe~TGR~m 99 (113)
T PF01043_consen 84 RDGEVVIVDEFTGRIM 99 (113)
T ss_dssp ETTEEEEBCTTTTSEB
T ss_pred EcCEEEEEECCCCCcC
Confidence 7999999999999973
No 146
>PF13036 DUF3897: Protein of unknown function (DUF3897)
Probab=21.40 E-value=86 Score=22.79 Aligned_cols=27 Identities=37% Similarity=0.625 Sum_probs=21.5
Q ss_pred CCCceEEEeeCCeEE---------------EEeCCCCeeeEE
Q 033675 29 SGDLALVATLNGTVH---------------LVDTKRGESRWS 55 (114)
Q Consensus 29 ~~~taLVatlDGTiY---------------LVd~~s~r~~WS 55 (114)
.+++.|.+...+.+. |+|..+|++.|+
T Consensus 134 gady~L~G~I~~~~~~~~~~~~~~y~~~l~L~d~~tg~ivW~ 175 (180)
T PF13036_consen 134 GADYMLSGKISSIVKRNGGKQQVYYQFTLQLVDLETGEIVWS 175 (180)
T ss_pred CCCEEEEEEEEEeEeecCCceeEEEEEEEEEEEcCCCcEEec
Confidence 667788887776644 779999999997
No 147
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=21.35 E-value=1.2e+02 Score=27.31 Aligned_cols=52 Identities=13% Similarity=0.161 Sum_probs=34.2
Q ss_pred CCCceEEEeeCCeEEEEe--CCCCeeeEEeecCCCeeeeeecCCCCceeeeCCc
Q 033675 29 SGDLALVATLNGTVHLVD--TKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGED 80 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd--~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdD 80 (114)
.+..-+++.-||+|++|| ++..+|.=+-.-++++.---+.++++-++.|||+
T Consensus 453 rpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~ 506 (555)
T KOG1587|consen 453 RPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA 506 (555)
T ss_pred CceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC
Confidence 455555566699999996 4555666555555454444455566778999886
No 148
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=21.22 E-value=2.3e+02 Score=26.17 Aligned_cols=64 Identities=19% Similarity=0.218 Sum_probs=46.6
Q ss_pred CCCCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCCcceEeeeeccc
Q 033675 27 PESGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGEDWKLYFHRKGI 90 (114)
Q Consensus 27 ~~~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgdDW~LY~h~~~~ 90 (114)
|+-+++.++++-+|-|||++..+++.+=||.-.+-+-...=-++..-.+-||.+=|.|.-+.+-
T Consensus 312 Shd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~ 375 (514)
T KOG2055|consen 312 SHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ 375 (514)
T ss_pred cCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCC
Confidence 4466788999999999999999999999998887776554334554444554444777766543
No 149
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=20.96 E-value=75 Score=26.17 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=11.8
Q ss_pred ceEEEeeCCeEEEE
Q 033675 32 LALVATLNGTVHLV 45 (114)
Q Consensus 32 taLVatlDGTiYLV 45 (114)
-.+||++||.||+.
T Consensus 242 RI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 242 RIVVACRDGKIYTI 255 (257)
T ss_pred EEEEEeCCCEEEEE
Confidence 45789999999986
No 150
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=20.89 E-value=98 Score=22.72 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=19.7
Q ss_pred ceeeeCCcceEeeeeccccceeeecccC
Q 033675 73 FYVDVGEDWKLYFHRKGIGKMKDIMKST 100 (114)
Q Consensus 73 ~fidcgdDW~LY~h~~~~GK~kl~~~s~ 100 (114)
++++.|+||++.--..-.|.........
T Consensus 23 y~~~~g~~W~~~~g~~~~G~Tq~~~~~~ 50 (168)
T PF07162_consen 23 YQLVHGPDWKLISGLSLEGQTQISKSSS 50 (168)
T ss_pred EEEEeCCCeEECCCCcceEEcceeecCc
Confidence 6799999999886655466666554443
No 151
>smart00120 HX Hemopexin-like repeats. Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs).
Probab=20.52 E-value=1.7e+02 Score=16.07 Aligned_cols=21 Identities=24% Similarity=0.602 Sum_probs=16.3
Q ss_pred eeCCeEEEEeCCCCeeeEEeecCC
Q 033675 37 TLNGTVHLVDTKRGESRWSFSMGK 60 (114)
Q Consensus 37 tlDGTiYLVd~~s~r~~WSFStGs 60 (114)
..+|.+|+. +|+-.|.|+...
T Consensus 7 ~~~~~~yfF---kg~~yw~~~~~~ 27 (45)
T smart00120 7 LRNGKTYFF---KGDKYWRFDPKR 27 (45)
T ss_pred eCCCeEEEE---eCCEEEEEcCCc
Confidence 348899988 577899998754
No 152
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=20.20 E-value=3.9e+02 Score=23.51 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=32.0
Q ss_pred CCCceEEEeeCCeEEEEeCCCCeeeEEeecCCCeeeeeecCCCCceeeeCC
Q 033675 29 SGDLALVATLNGTVHLVDTKRGESRWSFSMGKPIYSSFTRNDPDFYVDVGE 79 (114)
Q Consensus 29 ~~~taLVatlDGTiYLVd~~s~r~~WSFStGsPIYSSYqA~~~~~fidcgd 79 (114)
....-+-|+.||.+-+||.-+.-+.=-+..-+.--=.++-.|++-||-||.
T Consensus 66 Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 66 DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred CcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC
Confidence 555667789999999998765544333322222223345557777888874
Done!