BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033676
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQS---GDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEI 56
MV GMSE +GP + Q G I R+ RN SE++A+ ID VK++ YE
Sbjct: 366 MVCQLGMSEELGPLAWGKEEQEVFLGKEITRL--RN-YSEEVASKIDEEVKKIVTNCYER 422
Query: 57 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVE 95
A IR R+ +D IVE+LLEKET+ GDE R ILSE E
Sbjct: 423 AKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFE 461
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQS---GDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEI 56
MV GMSE +GP + Q G I R+ RN SE++A+ ID VK++ YE
Sbjct: 366 MVCQLGMSEELGPLAWGKEEQEVFLGKEITRL--RN-YSEEVASKIDEEVKKIVTNCYER 422
Query: 57 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVE 95
A IR R+ +D IVE+LLEKET+ GDE R ILSE E
Sbjct: 423 AKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFE 461
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 1 MVTTFGMS-EIGP--WSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
M+T +GM E GP +++ + + G +R SE+ A ID AV+RL + Y+
Sbjct: 379 MITEWGMHPEFGPVAYAVREDTYLGGYDVR-----QYSEETAKRIDEAVRRLIEEQYQRV 433
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 90
+ + RE ++++ E LLE+ET++ +EF+ ++
Sbjct: 434 KALLLEKREVLERVAETLLERETLTAEEFQRVV 466
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 47.0 bits (110), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 1 MVTTFGMS-EIGP--WSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
M+T +GM E GP +++ + + G +R SE+ A ID AV+RL + Y+
Sbjct: 388 MITEWGMHPEFGPVAYAVREDTYLGGYDVR-----QYSEETAKRIDEAVRRLIEEQYQRV 442
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 90
+ + RE ++++ E LLE+ET++ +EF+ ++
Sbjct: 443 KALLLEKREVLERVAETLLERETLTAEEFQRVV 475
>pdb|2DI4|A Chain A, Crystal Structure Of The Ftsh Protease Domain
pdb|2DI4|B Chain B, Crystal Structure Of The Ftsh Protease Domain
Length = 238
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 3/87 (3%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MV+ +GMS+ +GP ++ + + M S L +ID VKR+ YE A +
Sbjct: 111 MVSMWGMSDKVGPIAI--RRVANPFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKA 168
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEF 86
+ +E + +V+ LLEKET++ +EF
Sbjct: 169 IVEEYKEPLKAVVKKLLEKETITCEEF 195
>pdb|3NQI|A Chain A, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
pdb|3NQI|B Chain B, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
pdb|3NQI|C Chain C, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
pdb|3NQI|D Chain D, Crystal Structure Of A Putative Lipoprotein (Bf3042) From
Bacteroides Fragilis Nctc 9343 At 1.87 A Resolution
Length = 246
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 14 SLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQI 61
D +SGD I+++ R + ++ AA + A + S +AYEI SQI
Sbjct: 154 CYTDDIKSGDTILKLYLRYKVEDEPAAIAERATRTSSFKAYEI--SQI 199
>pdb|2BA0|F Chain F, Archaeal Exosome Core
pdb|2BA0|E Chain E, Archaeal Exosome Core
pdb|2BA0|D Chain D, Archaeal Exosome Core
pdb|2BA1|D Chain D, Archaeal Exosome Core
pdb|2BA1|E Chain E, Archaeal Exosome Core
pdb|2BA1|F Chain F, Archaeal Exosome Core
Length = 258
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRM---MARNSMSEKLAADID---AAVKRLSDRAY 54
+ FG E+ P L D S++ I+R MA S+ E+ D + ++S A+
Sbjct: 53 IAAVFGPREVHPRHLQDPSKA---IIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAF 109
Query: 55 EIALSQIRNNREAIDKIVEVL 75
E + + R AID VEVL
Sbjct: 110 EAVIMKELFPRSAIDIFVEVL 130
>pdb|3M7N|D Chain D, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|E Chain E, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M7N|F Chain F, Archaeoglobus Fulgidus Exosome With Rna Bound To The
Active Site
pdb|3M85|D Chain D, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|E Chain E, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
pdb|3M85|F Chain F, Archaeoglobus Fulgidus Exosome Y70a With Rna Bound To The
Active Site
Length = 258
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRM---MARNSMSEKLAADID---AAVKRLSDRAY 54
+ FG E+ P L D S++ I+R MA S+ E+ D + ++S A+
Sbjct: 53 IAAVFGPREVHPEHLQDPSKA---IIRYRYNMAPFSVEERKRPGPDRRSIEISKVSKEAF 109
Query: 55 EIALSQIRNNREAIDKIVEVL 75
E + + R AID VEVL
Sbjct: 110 EAVIMKELFPRSAIDIFVEVL 130
>pdb|3TY7|A Chain A, Crystal Structure Of Aldehyde Dehydrogenase Family
Protein From Staphylococcus Aureus
pdb|3TY7|B Chain B, Crystal Structure Of Aldehyde Dehydrogenase Family
Protein From Staphylococcus Aureus
Length = 478
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)
Query: 40 ADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 93
AD+D AV+ D E + ++ + +DKIV+ E E D +AI E
Sbjct: 45 ADVDKAVEAADDVYLEFRHTSVKERQALLDKIVK---EYENRKDDIVQAITDEL 95
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.343
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,410,337
Number of Sequences: 62578
Number of extensions: 71406
Number of successful extensions: 245
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 235
Number of HSP's gapped (non-prelim): 16
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)