BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033676
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W585|FTSH8_ARATH ATP-dependent zinc metalloprotease FTSH 8, chloroplastic
OS=Arabidopsis thaliana GN=FTSH8 PE=1 SV=1
Length = 685
Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/102 (87%), Positives = 94/102 (92%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
MVTTFGMSEIGPWSL+D S+ DVIMRMMARNSMSEKLA DID AVK LSD+AYEIALSQ
Sbjct: 570 MVTTFGMSEIGPWSLMDSSEQSDVIMRMMARNSMSEKLANDIDTAVKTLSDKAYEIALSQ 629
Query: 61 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRV 102
IRNNREA+DKIVE+LLEKETMSGDEFRAILSEF EIP ENRV
Sbjct: 630 IRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIPPENRV 671
>sp|Q655S1|FTSH2_ORYSJ ATP-dependent zinc metalloprotease FTSH 2, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH2 PE=3 SV=1
Length = 676
Score = 181 bits (458), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 90/103 (87%), Positives = 96/103 (93%), Gaps = 1/103 (0%)
Query: 1 MVTTFGMSEIGPWSLVD-GSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MV TFGMS+IGPWSL+D G+QSGDVIMRMMARNSMSEKLA DID AVKRLSD AYEIALS
Sbjct: 564 MVVTFGMSDIGPWSLMDSGAQSGDVIMRMMARNSMSEKLAEDIDTAVKRLSDEAYEIALS 623
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRV 102
QIR+NREA+DKIVEVLLEKET+SGDEFRAILSEF EIP ENRV
Sbjct: 624 QIRSNREAMDKIVEVLLEKETLSGDEFRAILSEFTEIPVENRV 666
>sp|O80860|FTSH2_ARATH ATP-dependent zinc metalloprotease FTSH 2, chloroplastic
OS=Arabidopsis thaliana GN=FTSH2 PE=1 SV=1
Length = 695
Score = 174 bits (442), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/102 (82%), Positives = 92/102 (90%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
MVTTFGMS+IGPWSL+D S DVIMRMMARNSMSEKLA DID+AVK+LSD AYEIALS
Sbjct: 577 MVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEKLAEDIDSAVKKLSDSAYEIALSH 636
Query: 61 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRV 102
I+NNREA+DK+VEVLLEKET+ GDEFRAILSEF EIP ENRV
Sbjct: 637 IKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIPPENRV 678
>sp|Q67WJ2|FTSH6_ORYSJ ATP-dependent zinc metalloprotease FTSH 6, chloroplastic OS=Oryza
sativa subsp. japonica GN=FTSH6 PE=3 SV=1
Length = 686
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/102 (64%), Positives = 85/102 (83%), Gaps = 1/102 (0%)
Query: 1 MVTTFGMSEIGPWSLVD-GSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MVT FGMSEIGPW+L + +Q GDV++RM+AR+SMSE+LAADIDAAV+ + D AYE+A +
Sbjct: 573 MVTAFGMSEIGPWALAEPAAQGGDVVLRMLARSSMSERLAADIDAAVRTIVDEAYEVAKA 632
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENR 101
+R NR AID++V+VL+EKET+ GDEFRAILSE V+I E R
Sbjct: 633 HVRRNRAAIDQLVDVLMEKETLGGDEFRAILSEHVDIGKERR 674
>sp|Q1PDW5|FTSH6_ARATH ATP-dependent zinc metalloprotease FTSH 6, chloroplastic
OS=Arabidopsis thaliana GN=FTSH6 PE=2 SV=1
Length = 688
Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 65/98 (66%), Positives = 82/98 (83%), Gaps = 1/98 (1%)
Query: 1 MVTTFGMSEIGPWSLVDGS-QSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MVT FGMSEIGPW+L D + + DV++RM+ARNSMSEKLA DID+ VK++ AYE+A
Sbjct: 574 MVTMFGMSEIGPWALTDPAVKQNDVVLRMLARNSMSEKLAEDIDSCVKKIIGDAYEVAKK 633
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIP 97
+RNNREAIDK+V+VLLEKET++GDEFRAILSE+ + P
Sbjct: 634 HVRNNREAIDKLVDVLLEKETLTGDEFRAILSEYTDQP 671
>sp|Q55700|FTSH2_SYNY3 ATP-dependent zinc metalloprotease FtsH 2 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH2 PE=1 SV=1
Length = 627
Score = 88.6 bits (218), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 76/108 (70%), Gaps = 4/108 (3%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMR--MMARNSMSEKLAADIDAAVKRLSDRAYEIAL 58
MVT FGMS +GP SL S G+V + +M R+ SE++A IDA V++L+++ +++A
Sbjct: 522 MVTRFGMSNLGPISLE--SSGGEVFLGGGLMNRSEYSEEVATRIDAQVRQLAEQGHQMAR 579
Query: 59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAV 106
++ RE +D++V++L+EKET+ G+EFR I++E+ E+P + ++ P +
Sbjct: 580 KIVQEQREVVDRLVDLLIEKETIDGEEFRQIVAEYAEVPVKEQLIPQL 627
>sp|P49825|FTSH_ODOSI ATP-dependent zinc metalloprotease FtsH OS=Odontella sinensis
GN=ftsH PE=3 SV=1
Length = 644
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 3/102 (2%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIM--RMMARNSMSEKLAADIDAAVKRLSDRAYEIAL 58
MVT FGMS IGP +L D S +G V + M + + +E +A ID V+++ YE A+
Sbjct: 536 MVTRFGMSNIGPLALEDES-TGQVFLGGNMASGSEYAENIADRIDDEVRKIITYCYEKAI 594
Query: 59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
+ +NR ID IVE LL+KETM GDEFR +LS + +P++N
Sbjct: 595 EIVLDNRVVIDLIVEKLLDKETMDGDEFRELLSTYTILPNKN 636
>sp|Q1XDF9|FTSH_PORYE ATP-dependent zinc metalloprotease FtsH OS=Porphyra yezoensis
GN=ftsH PE=3 SV=1
Length = 628
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 46/102 (45%), Positives = 65/102 (63%), Gaps = 4/102 (3%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIM-RMMARNS-MSEKLAADIDAAVKRLSDRAYEIAL 58
MVT FGMS+IGP SL SQ GD + R M S S+++A +ID V+ + Y A
Sbjct: 523 MVTRFGMSKIGPLSLE--SQGGDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYAQAK 580
Query: 59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
I +NR ID++V++L+EKET+ G+EFR I+ E+ IP +N
Sbjct: 581 HIIIDNRVVIDRLVDLLIEKETIEGNEFRDIVKEYTAIPEKN 622
>sp|P51327|FTSH_PORPU ATP-dependent zinc metalloprotease FtsH OS=Porphyra purpurea
GN=ftsH PE=3 SV=1
Length = 628
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 66/102 (64%), Gaps = 4/102 (3%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIM-RMMARNS-MSEKLAADIDAAVKRLSDRAYEIAL 58
MVT FGMS+IGP SL SQ D + R M S S+++A +ID V+ + Y+ A
Sbjct: 523 MVTRFGMSKIGPLSLE--SQGSDPFLGRGMGGGSEYSDEVATNIDKQVREIVSECYKEAK 580
Query: 59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
+++NR +D++V++L+EKET+ G+EFR I+ E+ IP +N
Sbjct: 581 KIVKDNRVVMDRLVDLLIEKETIEGNEFRHIVKEYTAIPEKN 622
>sp|O78516|FTSH_GUITH ATP-dependent zinc metalloprotease FtsH OS=Guillardia theta GN=ftsH
PE=3 SV=1
Length = 631
Score = 77.4 bits (189), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 64/101 (63%), Gaps = 4/101 (3%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIM-RMMARNS-MSEKLAADIDAAVKRLSDRAYEIAL 58
MVT FGMS IGP SL SQ+ D + R M +S SE +A+ ID V+ + + +
Sbjct: 523 MVTRFGMSNIGPLSLE--SQNSDPFLGRTMGSSSQYSEDIASRIDMQVRAIIQHCHTETV 580
Query: 59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSE 99
I++NR IDK+V++L+EKET+ GDEFR I+ +F +P +
Sbjct: 581 QIIKDNRVVIDKLVDLLIEKETIDGDEFRQIVGDFTSLPEK 621
>sp|Q10ZF7|FTSH_TRIEI ATP-dependent zinc metalloprotease FtsH OS=Trichodesmium erythraeum
(strain IMS101) GN=ftsH PE=3 SV=1
Length = 667
Score = 75.9 bits (185), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 67/104 (64%), Gaps = 5/104 (4%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNS---MSEKLAADIDAAVKRLSDRAYEIA 57
MVT +GMS++GP +L + +G+V + ++ SE++A ID ++ + YE A
Sbjct: 557 MVTRYGMSDLGPLALEN--PNGEVFLGRGWQSQQPEYSEEVAIKIDHQIRTMVFHCYEKA 614
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENR 101
IR NR +D++V++L+EKET+ GDEFR I+SE+ E+P + +
Sbjct: 615 RKIIRENRVLMDRLVDLLIEKETIEGDEFRRIVSEYTELPKKQK 658
>sp|Q8YMZ8|FTSH_NOSS1 ATP-dependent zinc metalloprotease FtsH OS=Nostoc sp. (strain PCC
7120 / UTEX 2576) GN=ftsH PE=3 SV=1
Length = 656
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/94 (41%), Positives = 64/94 (68%), Gaps = 4/94 (4%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMR--MMARNSMSEKLAADIDAAVKRLSDRAYEIAL 58
MVT FGMSE+GP SL + QSG+V + M ++ SE++AA ID+ V+ + + Y+ +
Sbjct: 549 MVTKFGMSELGPLSLEN--QSGEVFLGRDWMNKSDYSEEIAAKIDSQVREIINTCYQTSK 606
Query: 59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92
++ NR ++++V++L E+ET+ GD FR I+SE
Sbjct: 607 ELLQTNRVVMERLVDLLTEQETIEGDLFRKIVSE 640
>sp|Q9TJ83|FTSH_CYAME ATP-dependent zinc metalloprotease FtsH OS=Cyanidioschyzon merolae
GN=ftsH PE=3 SV=1
Length = 603
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 60/100 (60%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
MVT FGMS +GP L G++ + M +SE++ A IDA V+ + + YE L
Sbjct: 504 MVTRFGMSSLGPLCLETGNEEIFLGRDMRLMPEVSEEVIAQIDAQVRGMIEACYEKVLEL 563
Query: 61 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
++ NR +D+IVE L+EKET+ G EFR ++S+ + + N
Sbjct: 564 MQANRVVMDRIVEELMEKETLDGKEFRQLVSQAARLTAVN 603
>sp|Q9WZ49|FTSH_THEMA ATP-dependent zinc metalloprotease FtsH OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=ftsH PE=1 SV=1
Length = 610
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/99 (46%), Positives = 58/99 (58%), Gaps = 7/99 (7%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQS---GDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEI 56
MV GMSE +GP + Q G I R+ RN SE++A+ ID VK++ YE
Sbjct: 511 MVCQLGMSEELGPLAWGKEEQEVFLGKEITRL--RN-YSEEVASKIDEEVKKIVTNCYER 567
Query: 57 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVE 95
A IR R+ +D IVE+LLEKET+ GDE R ILSE E
Sbjct: 568 AKEIIRKYRKQLDNIVEILLEKETIEGDELRRILSEEFE 606
>sp|B7T1V0|FTSH_VAULI ATP-dependent zinc metalloprotease FtsH OS=Vaucheria litorea
GN=ftsH PE=3 SV=1
Length = 644
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 65/120 (54%), Gaps = 9/120 (7%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNS-MSEKLAADIDAAVKRLSDRAYEIALS 59
MVT GMS +GP SL D + I R + N+ S +A ID VK + Y+ A++
Sbjct: 525 MVTRLGMSTVGPISL-DANVEQVFIGRGIKNNNEFSASVANKIDDQVKIIIKHCYDQAVN 583
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPS-------ENRVAPAVPAPLSV 112
I+ NR ID++V L+++ET+SG++FR ++ + ++P +N V P + V
Sbjct: 584 IIKQNRFLIDQLVNTLIQEETISGNDFREQINNYTKLPKKLSTLSEKNNVNPKITESFVV 643
>sp|O19922|FTSH_CYACA ATP-dependent zinc metalloprotease FtsH OS=Cyanidium caldarium
GN=ftsH PE=3 SV=1
Length = 614
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/94 (37%), Positives = 55/94 (58%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
MVT FGMS++GP L + S + +M R+ +SE++ A +D V+ + Y A +
Sbjct: 521 MVTKFGMSKVGPICLENSSSEVFIGRDLMGRHELSEEMVAKVDLEVRSILKDCYIQARTI 580
Query: 61 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 94
+ NR+ ID++V L+EKET+ EF I+ E V
Sbjct: 581 LSQNRKLIDRVVNELVEKETIEAKEFMRIVEERV 614
>sp|B0K5A3|FTSH1_THEPX ATP-dependent zinc metalloprotease FtsH 1 OS=Thermoanaerobacter sp.
(strain X514) GN=ftsH1 PE=3 SV=1
Length = 611
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 63/94 (67%), Gaps = 5/94 (5%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMARN-SMSEKLAADIDAAVKRLSDRAYEIA 57
MVT +GMSE +GP + G++S +V + R + R + SE++AA+ID +KR+ + AY+ A
Sbjct: 510 MVTEYGMSERLGPMTF--GTKSEEVFLGRDLGRTRNYSEEVAAEIDREIKRIIEEAYKRA 567
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 91
S ++ N + + ++ + L+EKE ++G+EF + +
Sbjct: 568 ESLLKENIDKLHRVAKALIEKEKLNGEEFEKVFN 601
>sp|D1AXT4|FTSH_STRM9 ATP-dependent zinc metalloprotease FtsH OS=Streptobacillus
moniliformis (strain ATCC 14647 / DSM 12112 / NCTC 10651
/ 9901) GN=ftsH PE=3 SV=1
Length = 683
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 58/91 (63%), Gaps = 6/91 (6%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
++++ GMSE+GP + + S +G M + +S + A +ID V++L YE L+
Sbjct: 580 LISSVGMSELGPINY-EHSDNG-----FMLSSDLSNETAREIDLEVRKLLKFKYEETLNL 633
Query: 61 IRNNREAIDKIVEVLLEKETMSGDEFRAILS 91
+R+N+E ++KI +L EKET++G E RA++S
Sbjct: 634 LRDNKETLEKIATLLKEKETVTGSEIRALVS 664
>sp|Q2JNP0|FTSH_SYNJB ATP-dependent zinc metalloprotease FtsH OS=Synechococcus sp.
(strain JA-2-3B'a(2-13)) GN=ftsH PE=3 SV=1
Length = 638
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 56/93 (60%), Gaps = 5/93 (5%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIM--RMMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
MVT FGMS+ +G +L G Q ++ + + A SE+ AA ID V+RL + AY+ A
Sbjct: 521 MVTRFGMSDRLGNVAL--GRQYANIFLGREIAAERDFSEETAALIDEEVRRLVNEAYQRA 578
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 90
IR NR +D+I L+E ET+ G+E +AI+
Sbjct: 579 TYLIRENRALLDRIARRLVEAETIDGEELQAII 611
>sp|A9BJK3|FTSH3_PETMO ATP-dependent zinc metalloprotease FtsH 3 OS=Petrotoga mobilis
(strain DSM 10674 / SJ95) GN=ftsH3 PE=3 SV=1
Length = 645
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 1/93 (1%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MV +FGMSE IGP + S+ + + + S++ A ++D+ VK++ +++YE A S
Sbjct: 512 MVESFGMSEKIGPVAWASESEETFLARELFREKNYSDETAKELDSEVKQIINKSYEKAKS 571
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92
+ N+E + I + LL+KET+SG E R +L +
Sbjct: 572 VLLENKEKLQFIAQYLLKKETISGQELRDLLQK 604
>sp|B9MPK5|FTSH_CALBD ATP-dependent zinc metalloprotease FtsH OS=Caldicellulosiruptor
bescii (strain ATCC BAA-1888 / DSM 6725 / Z-1320)
GN=ftsH PE=3 SV=1
Length = 616
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 61/96 (63%), Gaps = 7/96 (7%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMR---MMARNSMSEKLAADIDAAVKRLSDRAYEI 56
MVT +GMS+ +GP + G++ +V + +ARN SE++AA+ID +K + + AY+
Sbjct: 517 MVTKYGMSDKLGPMTF--GTEQEEVFLGRDLALARN-YSEEVAAEIDREIKSIIEEAYKK 573
Query: 57 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92
A ++ N + + K+ LLEKE ++G+EFR ++ E
Sbjct: 574 AEEILKQNIDKLHKVANALLEKEKLTGEEFRKLVFE 609
>sp|P72991|FTSH3_SYNY3 ATP-dependent zinc metalloprotease FtsH 3 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH3 PE=1 SV=1
Length = 616
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 60/94 (63%), Gaps = 5/94 (5%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMARN-SMSEKLAADIDAAVKRLSDRAYEIA 57
MVT FGMS+ +GP +L G Q G V + R +A + S++ AA ID V +L D+AY+ A
Sbjct: 515 MVTRFGMSDRLGPVAL--GRQGGGVFLGRDIASDRDFSDETAAAIDEEVSQLVDQAYQRA 572
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 91
+ NR +D++ E+L+EKET+ +E + +L+
Sbjct: 573 KQVLVENRGILDQLAEILVEKETVDSEELQTLLA 606
>sp|B9KXV3|FTSH1_THERP ATP-dependent zinc metalloprotease FtsH 1 OS=Thermomicrobium roseum
(strain ATCC 27502 / DSM 5159 / P-2) GN=ftsH1 PE=3 SV=1
Length = 652
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 64/115 (55%), Gaps = 3/115 (2%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MVT FGMSE +GP + + + + + + S+++A +ID V+RL D+AY+ A
Sbjct: 512 MVTEFGMSERLGPLAFGRKEELVFLGREIAEQRNYSDQVAYEIDQEVRRLIDQAYQTAKQ 571
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPLSVSA 114
+ ++ + ++KI +L+EKET+ G E A+ E P V P + P ++ A
Sbjct: 572 ILLDHMDKLEKIATLLVEKETLDGHEIEALFDE--PRPRPELVGPPLTRPAALIA 624
>sp|Q1AV13|FTSH_RUBXD ATP-dependent zinc metalloprotease FtsH OS=Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129) GN=ftsH PE=3 SV=1
Length = 651
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 61/111 (54%), Gaps = 7/111 (6%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMR--MMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
MVT +GMSE +G +L G G V M + A+ S+++A ID ++RL D AY+ A
Sbjct: 538 MVTRYGMSEKLGLIAL--GQHDGQVFMGRDLHAQPDYSDEIAFQIDKEIRRLVDEAYDTA 595
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV--EIPSENRVAPAV 106
+ NR ++K+ L+E ET+ + R ++ E+ E PS R A +V
Sbjct: 596 EDLLVRNRRLLEKLASDLIEYETVDAEHLRRLVEEYAVDEHPSRGRPAMSV 646
>sp|P73437|FTSH4_SYNY3 ATP-dependent zinc metalloprotease FtsH 4 OS=Synechocystis sp.
(strain PCC 6803 / Kazusa) GN=ftsH4 PE=2 SV=1
Length = 628
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 60/101 (59%), Gaps = 5/101 (4%)
Query: 1 MVTTFGMSEI-GPWSLVDGSQSGDVIMRMMA--RNSMSEKLAADIDAAVKRLSDRAYEIA 57
MVTT+GMS++ GP + D Q + + + M R +S+ A +ID VK + ++ + A
Sbjct: 526 MVTTYGMSKVLGPLAY-DKGQQNNFLGQGMGNPRRMVSDDTAKEIDLEVKEIVEQGHNQA 584
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPS 98
L+ + +NR+ ++ I E +LEKE + G+E +L + V+ P
Sbjct: 585 LAILEHNRDLLEAIAEKILEKEVIEGEELHHLLGQ-VQAPG 624
>sp|B8I4B9|FTSH_CLOCE ATP-dependent zinc metalloprotease FtsH OS=Clostridium
cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584
/ H10) GN=ftsH PE=3 SV=1
Length = 619
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 7/98 (7%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMR---MMARNSMSEKLAADIDAAVKRLSDRAYEI 56
MVT +GMSE +G +++ G+ + +V + ARN S++LAA ID VK + D AY+
Sbjct: 513 MVTKYGMSEKLG--NMIFGNDNDEVFIGRDLAQARN-YSDELAAIIDNEVKSIIDNAYQK 569
Query: 57 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 94
+S +R N ++K+ EVLLEKE + G EF I V
Sbjct: 570 TVSLLRENIVRLNKLAEVLLEKEKVEGAEFEEIFENAV 607
>sp|Q67JH0|FTSH3_SYMTH ATP-dependent zinc metalloprotease FtsH 3 OS=Symbiobacterium
thermophilum (strain T / IAM 14863) GN=ftsH3 PE=3 SV=1
Length = 626
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 55/86 (63%), Gaps = 5/86 (5%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMAR-NSMSEKLAADIDAAVKRLSDRAYEIA 57
MVT +GMSE +GP L G + +V + R M R + SE++A ID V++ AY+ A
Sbjct: 507 MVTEWGMSEKLGP--LTYGMKQDEVFLARDMTRLRNYSEEVAGLIDEEVRKFVHMAYQRA 564
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSG 83
+ + +R+A++K+ EVLLEKET+ G
Sbjct: 565 IDILTEHRDALEKVSEVLLEKETLEG 590
>sp|C8W731|FTSH_ATOPD ATP-dependent zinc metalloprotease FtsH OS=Atopobium parvulum
(strain ATCC 33793 / DSM 20469 / JCM 10300 / VPI 0546)
GN=ftsH PE=3 SV=1
Length = 644
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 55/104 (52%), Gaps = 8/104 (7%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
MVT +GMS+ +V SQ + + + SE A +IDA V+R+ + ++ AL
Sbjct: 533 MVTQYGMSD--KLGMVTLSQQQSRYLGGGSSLTCSEATAEEIDAEVRRIVEEGHQRALQT 590
Query: 61 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAP 104
++ NR + +I L +KET++G+EF IL EN AP
Sbjct: 591 LKENRFKLHEIAHYLQKKETITGEEFMNILKR------ENTFAP 628
>sp|D3FA80|FTSH2_CONWI ATP-dependent zinc metalloprotease FtsH 2 OS=Conexibacter woesei
(strain DSM 14684 / JCM 11494 / NBRC 100937 / ID131577)
GN=ftsH2 PE=3 SV=1
Length = 691
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 58/103 (56%), Gaps = 5/103 (4%)
Query: 1 MVTTFGMS-EIGPWSLVDGSQSGDVIM--RMMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
MVT+FGMS E+GP ++ G +SG+V + + ++ K ID AV+RL A +A
Sbjct: 574 MVTSFGMSDELGPVTI--GEKSGEVFLGASLQDLGAVGPKTLDLIDDAVERLVKDAELVA 631
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSEN 100
+ +R N +A+ + LLE ET+SG A+LS + E+
Sbjct: 632 RAILRINIDAVHETAHALLEHETLSGVALEAVLSTVTTVEPEH 674
>sp|C5CES8|FTSH_KOSOT ATP-dependent zinc metalloprotease FtsH OS=Kosmotoga olearia
(strain TBF 19.5.1) GN=ftsH PE=3 SV=1
Length = 645
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 56/96 (58%), Gaps = 9/96 (9%)
Query: 1 MVTTFGMSE-IGP--WSLVDGSQSGDVIM-RMMAR-NSMSEKLAADIDAAVKRLSDRAYE 55
MV GMS+ +GP W G + G+V + R + R + SE++A++ID VK++ A+E
Sbjct: 514 MVCQLGMSDRLGPIAW----GKEEGEVFLGRELTRMRNYSEEIASEIDNEVKKIVIEAHE 569
Query: 56 IALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 91
A + R+ +DK E L+EKET++G E I+
Sbjct: 570 RARKLVEKFRDKLDKAAEYLIEKETITGKELAEIVG 605
>sp|B2UMY1|FTSH_AKKM8 ATP-dependent zinc metalloprotease FtsH OS=Akkermansia muciniphila
(strain ATCC BAA-835) GN=ftsH PE=3 SV=1
Length = 812
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 62/114 (54%), Gaps = 9/114 (7%)
Query: 1 MVTTFGMSEIGPWSLVD-GSQSGDV-IMRMMARNS--MSEKLAADIDAAVKRLSDRAYEI 56
MV FGMSE L++ G G+V I R + S SE A ID+ V+ L D AYE
Sbjct: 642 MVCEFGMSE--KLGLIEYGEHQGEVYIARDLGTRSRNYSESTAELIDSEVRFLVDSAYER 699
Query: 57 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVPAPL 110
A++ + NR+ +D + E L+E ET+ G + IL E+ E+ +N A P P+
Sbjct: 700 AMAILTENRDKLDILTEALMEFETLEGSQVMDIL-EYGEM--KNPPARVTPPPM 750
>sp|A0LN68|FTSH_SYNFM ATP-dependent zinc metalloprotease FtsH OS=Syntrophobacter
fumaroxidans (strain DSM 10017 / MPOB) GN=ftsH PE=3 SV=1
Length = 647
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 54/94 (57%), Gaps = 2/94 (2%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMAR-NSMSEKLAADIDAAVKRLSDRAYEIAL 58
MV +GMSE +GP + +S + + + +R SE +A +ID + R+ + A+E
Sbjct: 537 MVMEYGMSERLGPLTYTRDPRSAHLDLGLGSRERDYSEMIAQEIDEEITRIVEDAHEKVR 596
Query: 59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92
+ ++ R ++K+ ++LLEKE++ G+E + E
Sbjct: 597 ATLKRERGCLEKLAKILLEKESIDGEELKQFCQE 630
>sp|B2XTF7|FTSH_HETA2 ATP-dependent zinc metalloprotease FtsH OS=Heterosigma akashiwo
(strain NIES-293) GN=ftsH PE=3 SV=1
Length = 663
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 54/99 (54%), Gaps = 1/99 (1%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMR-MMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
M+ FGMS IGP SL S + R + N SE LA ID ++ +++ Y A+
Sbjct: 554 MILRFGMSGIGPVSLSKPGGSFLFVGRGVRPSNEYSEALAIKIDEQIRTITELCYNEAVE 613
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPS 98
+ NR ++D V L++ E ++G F ++++F ++P+
Sbjct: 614 IMDLNRISLDLAVTGLIQDEVLTGVSFEKVVADFSKLPT 652
>sp|Q9ZEA2|FTSH_RICPR ATP-dependent zinc metalloprotease FtsH OS=Rickettsia prowazekii
(strain Madrid E) GN=ftsH PE=3 SV=1
Length = 637
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MVT G+S+ IGP + GS S D+ R + N +SE A IDA VKR+ + YE A
Sbjct: 506 MVTKAGLSDLIGP--IFHGSNSDDMYGRQ-SSNEISEATAELIDAEVKRIITQGYEFAKD 562
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILS 91
+ + + + + L+E ET+SG + + +LS
Sbjct: 563 ILTKHIDQLHTLANALIEYETLSGQQIKNLLS 594
>sp|C1F8X6|FTSH_ACIC5 ATP-dependent zinc metalloprotease FtsH OS=Acidobacterium
capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670)
GN=ftsH PE=3 SV=1
Length = 639
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIM-RMMARN-SMSEKLAADIDAAVKRLSDRAYEIAL 58
MV +GMS +GP L G + + + R +A++ SE+ A IDA V+ L D AY +
Sbjct: 505 MVCEYGMSRLGP--LTYGKKEEQIFLGREIAQHRDFSEETARQIDAEVRSLVDEAYRASY 562
Query: 59 SQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 90
+ +N+ + K+ LLE+ET+ ++ R I+
Sbjct: 563 QLLNDNQPIMHKMAAALLERETIDANDIRMII 594
>sp|Q88Z31|FTSH_LACPL ATP-dependent zinc metalloprotease FtsH OS=Lactobacillus plantarum
(strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=ftsH PE=2
SV=1
Length = 745
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MVT +GMSE +GP L + +Q + M ++ S+ A ID V+RLS A++ A
Sbjct: 536 MVTQYGMSEKLGPVELENANQQA-AYQQGMGASAFSQHTAQLIDDEVRRLSQEAHQTATD 594
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 93
I ++RE I E LL+ ET+ DE + ILS F
Sbjct: 595 IIESHREQHKLIAEALLKYETL--DE-KQILSLF 625
>sp|C6VKW6|FTSH_LACPJ ATP-dependent zinc metalloprotease FtsH OS=Lactobacillus plantarum
(strain JDM1) GN=ftsH PE=3 SV=1
Length = 745
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 53/94 (56%), Gaps = 5/94 (5%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MVT +GMSE +GP L + +Q + M ++ S+ A ID V+RLS A++ A
Sbjct: 536 MVTQYGMSEKLGPVELENANQQA-AYQQGMGASAFSQHTAQLIDDEVRRLSQEAHQTATD 594
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 93
I ++RE I E LL+ ET+ DE + ILS F
Sbjct: 595 IIESHREQHKLIAEALLKYETL--DE-KQILSLF 625
>sp|Q68XR9|FTSH_RICTY ATP-dependent zinc metalloprotease FtsH OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=ftsH PE=3 SV=1
Length = 637
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MVT G+S+ IGP + GS S D+ R + N +SE A IDA VK++ + YE A
Sbjct: 506 MVTKAGLSDLIGP--IFHGSSSDDMYGRQQS-NEISEATAKLIDAEVKKIITQGYEFAKD 562
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILS 91
+ + + + + L+E ET+SG + + +LS
Sbjct: 563 ILTKHIDQLHTLANALIEYETLSGQQIKNLLS 594
>sp|Q6MLS7|FTSH1_BDEBA ATP-dependent zinc metalloprotease FtsH 1 OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=ftsH1 PE=3 SV=1
Length = 645
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 52/88 (59%), Gaps = 5/88 (5%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNS---MSEKLAADIDAAVKRLSDRAYEIA 57
MV +GMS++GP L ++ V M M N S+ A +ID V+++ Y+I+
Sbjct: 512 MVCEWGMSKLGP--LAYETRDNPVFMGMGYGNKSKEYSDAKAQEIDTEVEKIIKHGYDIS 569
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDE 85
+ +R++++A++++ + LLE ET+ G E
Sbjct: 570 IQILRDHQDALERLTQALLEYETIDGHE 597
>sp|B2A3Q4|FTSH_NATTJ ATP-dependent zinc metalloprotease FtsH OS=Natranaerobius
thermophilus (strain ATCC BAA-1301 / DSM 18059 /
JW/NM-WN-LF) GN=ftsH PE=3 SV=1
Length = 693
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 5/93 (5%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMARNS-MSEKLAADIDAAVKRLSDRAYEIA 57
M+ +GMSE +GP +L G + G V + R +AR+ SE +A ID ++ + D +Y+ A
Sbjct: 503 MIMEYGMSENLGPITL--GQKQGQVFLGRDIARDKDYSENIAYAIDKEIRNMVDSSYQEA 560
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 90
+ N + ++KI + L+E+ET+ E + ++
Sbjct: 561 RETLEENIDKLEKIAQALMERETLVAKEIKMLM 593
>sp|Q92JJ9|FTSH_RICCN ATP-dependent zinc metalloprotease FtsH OS=Rickettsia conorii
(strain ATCC VR-613 / Malish 7) GN=ftsH PE=3 SV=1
Length = 637
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 4/92 (4%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MVT G+S+ IGP + GS SGD + N SE A IDA VKR+ + YE A
Sbjct: 506 MVTKAGLSDLIGP--IFHGS-SGDDMYGRQPNNETSEATAELIDAEVKRIITQGYEFAKD 562
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILS 91
+ + + + + L+E ET+SG + + +LS
Sbjct: 563 ILTKHIDQLHTLANALIEYETLSGQQIKNLLS 594
>sp|Q6M2F0|FTSH_CORGL ATP-dependent zinc metalloprotease FtsH OS=Corynebacterium
glutamicum (strain ATCC 13032 / DSM 20300 / JCM 1318 /
LMG 3730 / NCIMB 10025) GN=ftsH PE=3 SV=1
Length = 853
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSM--SEKLAADIDAAVKRLSDRAYEIA 57
MVT +GMS +G + G + GD ++ S+++AA ID V+ L D+A+E++
Sbjct: 514 MVTEYGMSPAVG--MVKYGQEQGDPFSGRGGGGNLDHSQEVAATIDTEVQFLLDKAHEVS 571
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 94
S + R+ +D++ E LLEKET+ + A+ + V
Sbjct: 572 YSILAEYRDHLDRLAEKLLEKETLRRPDLEALFDDIV 608
>sp|A5W382|FTSH_PSEP1 ATP-dependent zinc metalloprotease FtsH OS=Pseudomonas putida
(strain F1 / ATCC 700007) GN=ftsH PE=3 SV=1
Length = 615
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 54/92 (58%), Gaps = 4/92 (4%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSG---DVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
+VT FGMS + ++++ Q+G D ++R R SE+ A +ID AV+ L + AY A
Sbjct: 508 LVTRFGMSPVLGQAVLERQQAGYLGDSLLRQ-ERKDYSEQTAREIDLAVRGLLEEAYGRA 566
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAI 89
+ + R+ +D +LL KET++ +EF A+
Sbjct: 567 RALLEQRRDDLDAGARLLLAKETITPEEFPAL 598
>sp|P94304|FTSH_BACPE ATP-dependent zinc metalloprotease FtsH OS=Bacillus pseudofirmus
(strain OF4) GN=ftsH PE=3 SV=2
Length = 679
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARN--SMSEKLAADIDAAVKRLSDRAYEIA 57
MVT +GMSE +GP + GS G V + +N + S+ +A +ID V+R+ Y
Sbjct: 515 MVTEYGMSEKLGPMQFISGS-GGQVFLGRDIQNEQNYSDAIAHEIDLEVQRIIKECYARC 573
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92
+ N++++D + + LL+ ET+ ++ ++++ E
Sbjct: 574 KQILLENKDSLDLVAKTLLDMETLDAEQIKSLVHE 608
>sp|A9EXK6|FTSH4_SORC5 ATP-dependent zinc metalloprotease FtsH 4 OS=Sorangium cellulosum
(strain So ce56) GN=ftsH4 PE=3 SV=1
Length = 648
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/106 (35%), Positives = 55/106 (51%), Gaps = 7/106 (6%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMR---MMARNSMSEKLAADIDAAVKRLSDRAYEI 56
MVT FGMS+ IGP S G+ V + R SE +A ID V+R A+
Sbjct: 515 MVTEFGMSDVIGPISY--GADEESVFLGRDFTSRRRDYSETIANQIDDEVRRFILDAHAE 572
Query: 57 ALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRV 102
A + +NRE ++++ LLE+ET+ +E AI+ E+P RV
Sbjct: 573 ARQLLTDNREILERLATALLERETLDAEEVDAIVGG-RELPQRQRV 617
>sp|D0LWB8|FTSH_HALO1 ATP-dependent zinc metalloprotease FtsH OS=Haliangium ochraceum
(strain DSM 14365 / JCM 11303 / SMP-2) GN=ftsH PE=3 SV=1
Length = 682
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 2/87 (2%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMAR-NSMSEKLAADIDAAVKRLSDRAYEIAL 58
MVT +GMS+ IGP + G + + R + + + S++ A ID ++R+ YE A
Sbjct: 542 MVTEWGMSDVIGPLNFASGGKQEVFLGRDLPQAEAYSQETAQRIDGEIRRIVTDQYERAR 601
Query: 59 SQIRNNREAIDKIVEVLLEKETMSGDE 85
+ NR+A++++ LLE ET+ G++
Sbjct: 602 RMLEENRDALERVARGLLEYETLDGND 628
>sp|Q5SI82|FTSH_THET8 ATP-dependent zinc metalloprotease FtsH OS=Thermus thermophilus
(strain HB8 / ATCC 27634 / DSM 579) GN=ftsH PE=1 SV=1
Length = 624
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
Query: 1 MVTTFGMS-EIGP--WSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIA 57
M+T +GM E GP +++ + + G +R SE+ A ID AV+RL + Y+
Sbjct: 504 MITEWGMHPEFGPVAYAVREDTYLGGYDVR-----QYSEETAKRIDEAVRRLIEEQYQRV 558
Query: 58 LSQIRNNREAIDKIVEVLLEKETMSGDEFRAIL 90
+ + RE ++++ E LLE+ET++ +EF+ ++
Sbjct: 559 KALLLEKREVLERVAETLLERETLTAEEFQRVV 591
>sp|Q98PE4|FTSH_MYCPU ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma pulmonis
(strain UAB CTIP) GN=ftsH PE=3 SV=1
Length = 725
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQ 60
MVT +GMS +GP + +++ + R ++ + K+A +ID ++++ + EIA+
Sbjct: 563 MVTEWGMSALGPIKYEEDTEN-PFLGRDYSKGTFGSKMAHEIDLEIRKIISASEEIAIKA 621
Query: 61 IRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAP 104
I N E ++ I + LLE ET+ +E I P+ ++ P
Sbjct: 622 IEQNLELLELIKDSLLENETIVAEEIEYIEKNMKLPPNNEKIKP 665
>sp|A6TWP7|FTSH2_ALKMQ ATP-dependent zinc metalloprotease FtsH 2 OS=Alkaliphilus
metalliredigens (strain QYMF) GN=ftsH2 PE=3 SV=1
Length = 689
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 57/108 (52%), Gaps = 1/108 (0%)
Query: 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALS 59
MVT +GMS+ +G + DG + ++++ SE++AA+ID +++ + AY +
Sbjct: 514 MVTQYGMSDKLGSMTFGDGDSEVFLGRDFTSKHNYSEEVAAEIDQEIRKFVEEAYMLTEK 573
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPSENRVAPAVP 107
+ N + + I + LL+ ET+ D F I + + I ++++ P
Sbjct: 574 LLTENMDKLHVIAQALLKLETLDADAFEMIFTGEIVIGKDDQLEDIQP 621
>sp|Q6KHA4|FTSH_MYCMO ATP-dependent zinc metalloprotease FtsH OS=Mycoplasma mobile
(strain ATCC 43663 / 163K / NCTC 11711) GN=ftsH PE=3
SV=1
Length = 707
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 60/99 (60%), Gaps = 3/99 (3%)
Query: 1 MVTTFGMSEIGPWSLVDGSQSGDVIMRMMARNSM-SEKLAADIDAAVKRLSDRAYEIALS 59
MVT +GMS++GP + + S + R +N + S+ +A +ID V+++ A + A+
Sbjct: 557 MVTEWGMSDLGPI-MYEEDTSNPFLGRDYTKNQLFSDHIAREIDTEVRKIILTAEQKAIE 615
Query: 60 QIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFVEIPS 98
I+ NRE ++ I E LLE ET+ +E + I ++ +++PS
Sbjct: 616 VIQENREMLELIKEALLENETIVDEEIQYI-AKNLKLPS 653
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.129 0.342
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,010,690
Number of Sequences: 539616
Number of extensions: 1181644
Number of successful extensions: 5753
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 53
Number of HSP's that attempted gapping in prelim test: 5536
Number of HSP's gapped (non-prelim): 247
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)