Query 033676
Match_columns 114
No_of_seqs 129 out of 1021
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 07:55:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033676.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033676hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2di4_A Zinc protease, cell div 99.9 2.1E-24 7E-29 164.4 9.5 95 1-97 111-206 (238)
2 2dhr_A FTSH; AAA+ protein, hex 99.9 4.6E-22 1.6E-26 164.2 8.9 107 1-110 379-487 (499)
3 2ce7_A Cell division protein F 99.8 6.7E-21 2.3E-25 156.5 8.1 91 1-92 366-458 (476)
4 3ygs_P Procaspase 9; apoptosis 89.9 0.57 2E-05 30.0 4.8 38 55-92 4-47 (97)
5 2p1h_A APAF-1, apoptotic prote 85.8 2.4 8E-05 26.4 5.7 35 58-92 8-48 (94)
6 3crd_A Raidd; caspase recruitm 83.2 0.92 3.1E-05 29.0 2.9 36 57-92 5-47 (100)
7 2l9b_A MRNA 3'-END-processing 76.4 9.9 0.00034 25.2 6.3 59 33-91 48-106 (109)
8 4efa_E V-type proton ATPase su 75.4 12 0.00041 27.0 7.2 48 36-83 11-58 (233)
9 2gpi_A Conserved hypothetical 68.5 6.3 0.00022 25.2 3.8 29 54-82 52-80 (91)
10 4i16_A Caspase recruitment dom 68.1 5.8 0.0002 25.6 3.6 39 55-93 3-47 (93)
11 3fwc_B Nuclear mRNA export pro 66.7 21 0.00072 22.4 6.5 41 33-77 10-50 (85)
12 4eba_G RNA15, KLLA0F09383P; HA 65.4 2.2 7.6E-05 30.6 1.2 62 33-94 53-114 (174)
13 3v6i_A V-type ATP synthase sub 60.9 35 0.0012 23.6 6.9 40 39-78 8-47 (187)
14 2nz7_A NOD1, caspase recruitme 58.5 9.6 0.00033 24.5 3.3 25 67-92 28-52 (98)
15 4dah_A Sporulation kinase D; a 54.1 42 0.0015 22.6 6.3 57 35-93 7-63 (217)
16 2dii_A TFIIH basal transcripti 51.9 15 0.00051 21.9 3.1 38 54-92 16-53 (61)
17 3li9_A Hypothetical sensory tr 47.8 61 0.0021 22.8 6.5 55 39-93 11-65 (291)
18 3iyk_A VP5; icosahedral virus; 46.8 34 0.0012 28.3 5.4 46 48-93 149-194 (526)
19 3lib_A Hypothetical sensory tr 46.0 63 0.0022 22.7 6.4 55 39-93 10-64 (290)
20 4e9m_A Nucleotide-binding olig 45.3 42 0.0014 23.2 5.0 22 69-90 44-65 (144)
21 3a8g_B NitrIle hydratase subun 38.8 82 0.0028 22.9 6.0 31 62-92 71-101 (212)
22 1oxw_A Patatin; alpha/beta cla 36.2 16 0.00055 28.3 1.9 31 49-79 325-364 (373)
23 2zze_A Alanyl-tRNA synthetase; 36.1 1.2E+02 0.004 26.2 7.4 51 44-94 410-462 (752)
24 3f4m_A Tumor necrosis factor, 36.0 60 0.002 22.8 4.7 48 41-89 7-64 (161)
25 1yfs_A Alanyl-tRNA synthetase; 35.3 1.2E+02 0.0041 24.7 7.0 52 44-95 340-393 (465)
26 2kk7_A V-type ATP synthase sub 34.5 63 0.0021 18.1 5.6 32 39-70 16-47 (52)
27 3lif_A Putative diguanylate cy 33.2 1.2E+02 0.004 20.8 6.9 54 38-92 9-62 (254)
28 3lay_A Zinc resistance-associa 31.9 1.3E+02 0.0045 21.0 6.4 49 43-92 73-121 (175)
29 3d5l_A Regulatory protein RECX 31.1 78 0.0027 22.6 4.8 58 31-91 43-100 (221)
30 1skv_A ORF D-63, hypothetical 30.8 91 0.0031 18.8 4.4 43 38-81 10-52 (69)
31 1f1e_A Histone fold protein; a 30.7 1.3E+02 0.0045 20.7 7.1 30 78-107 55-84 (154)
32 1wmw_A Geranylgeranyl diphosph 29.0 1.1E+02 0.0037 23.2 5.5 34 45-78 286-328 (330)
33 1ugp_B NitrIle hydratase beta 28.9 77 0.0026 23.3 4.5 34 62-95 67-100 (226)
34 2kvc_A Putative uncharacterize 27.6 38 0.0013 22.1 2.3 31 66-96 42-72 (103)
35 3e04_A Fumarase, fumarate hydr 26.2 70 0.0024 26.1 4.2 42 53-94 444-485 (490)
36 3gtd_A Fumarase C, fumarate hy 26.1 59 0.002 26.5 3.7 41 53-93 438-478 (482)
37 1dgn_A Iceberg (protease inhib 24.8 1E+02 0.0036 18.9 4.0 27 66-92 19-45 (89)
38 3v6i_A V-type ATP synthase sub 24.7 1.7E+02 0.0058 19.9 7.4 35 38-72 18-52 (187)
39 3dfz_A SIRC, precorrin-2 dehyd 24.6 80 0.0027 22.8 3.9 38 33-70 148-185 (223)
40 1ybk_A Tetrabrachion; right ha 24.3 99 0.0034 17.1 6.5 37 36-72 5-41 (52)
41 1z6t_A APAF-1, apoptotic prote 23.8 1.4E+02 0.0048 23.5 5.5 34 58-91 6-45 (591)
42 2oo9_A E3 ubiquitin-protein li 23.7 55 0.0019 18.3 2.2 40 41-80 3-44 (46)
43 1e91_A Paired amphipathic heli 22.3 44 0.0015 20.6 1.8 25 50-74 55-79 (85)
44 2ooa_A E3 ubiquitin-protein li 21.8 31 0.0011 19.9 0.9 40 39-78 8-49 (52)
45 3lom_A Geranyltranstransferase 21.3 97 0.0033 23.5 3.9 38 45-82 265-305 (313)
46 1okr_A MECI, methicillin resis 21.1 1.5E+02 0.0051 18.0 4.9 20 72-91 99-118 (123)
47 1y9b_A Conserved hypothetical 20.7 1.1E+02 0.0037 19.0 3.4 19 49-67 36-54 (90)
48 2kjg_A Archaeal protein SSO690 20.4 1.8E+02 0.0061 18.6 5.8 38 53-90 48-86 (99)
49 2cr7_A Paired amphipathic heli 20.3 72 0.0025 19.4 2.5 24 51-74 49-72 (80)
50 4fm4_B NitrIle hydratase beta 20.2 1.3E+02 0.0045 21.6 4.2 30 64-93 69-98 (206)
51 4hgv_A Fumarase C, fumarate hy 20.0 67 0.0023 26.1 2.9 23 71-93 467-489 (495)
No 1
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=99.91 E-value=2.1e-24 Score=164.38 Aligned_cols=95 Identities=29% Similarity=0.454 Sum_probs=80.0
Q ss_pred CccccCCCC-CCcccccCCCCchhHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 033676 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKE 79 (114)
Q Consensus 1 MV~~~GMS~-lG~v~~~~~~~~~~fl~~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~E 79 (114)
||++||||+ +||++|...++ .|++.+...++||++|+..||.||++||+.||++|++||++|++.|++||++|+++|
T Consensus 111 MV~~~GMs~~lG~v~~~~~~~--~flg~~~~~~~~Se~ta~~iD~Ev~~il~~ay~~a~~iL~~nr~~L~~lA~~Lle~E 188 (238)
T 2di4_A 111 MVSMWGMSDKVGPIAIRRVAN--PFLGGMTTAVDTSPDLLREIDEEVKRIITEQYEKAKAIVEEYKEPLKAVVKKLLEKE 188 (238)
T ss_dssp HHHTSCCCTTTCSCCCCC------------CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCCCCCceeecCCcc--ccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999999 99999986543 377755557899999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhhcccCCC
Q 033676 80 TMSGDEFRAILSEFVEIP 97 (114)
Q Consensus 80 tL~g~e~~~ll~~~~~~~ 97 (114)
||+++||++|++.....+
T Consensus 189 tL~~~ei~~il~~~~~~~ 206 (238)
T 2di4_A 189 TITCEEFVEVFKLYGIEL 206 (238)
T ss_dssp EECHHHHHHHHHHHTCCC
T ss_pred eeCHHHHHHHHccCCCCc
Confidence 999999999998764443
No 2
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.86 E-value=4.6e-22 Score=164.16 Aligned_cols=107 Identities=26% Similarity=0.433 Sum_probs=85.5
Q ss_pred CccccCCCC-CCcccccCCCCchhHHHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Q 033676 1 MVTTFGMSE-IGPWSLVDGSQSGDVIMRMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKE 79 (114)
Q Consensus 1 MV~~~GMS~-lG~v~~~~~~~~~~fl~~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~E 79 (114)
||++||||+ +|+++|...... |++.+. .++||++|+..||.||++||++||++|++||++|++.|++||++|+++|
T Consensus 379 mv~~~gm~~~~g~~~~~~~~~~--~~~~~~-~~~~s~~~~~~i~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~e 455 (499)
T 2dhr_A 379 MITEWGMHPEFGPVAYAVREDT--YLGGYD-VRQYSEETAKRIDEAVRRLIEEQYQRVKALLLEKREVLERVAETLLERE 455 (499)
T ss_dssp HHTTSCCCSSSCSCCCCCCCCC--SSCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCCCCCceeecCCCcc--cccccc-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 899999999 999999865433 665433 6789999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHhhcccCCCCcCcCCC-CCCCCc
Q 033676 80 TMSGDEFRAILSEFVEIPSENRVAP-AVPAPL 110 (114)
Q Consensus 80 tL~g~e~~~ll~~~~~~~~~~~~~~-~~~~~~ 110 (114)
||+++||++++......+++...+. +-|..+
T Consensus 456 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (499)
T 2dhr_A 456 TLTAEEFQRVVEGLPLEAPEEAREEREPPRVV 487 (499)
T ss_dssp EECHHHHHHHHTTCCCCCCC------------
T ss_pred eeCHHHHHHHhccCCCCCcchhhhccCCCCcC
Confidence 9999999999988755544444444 444443
No 3
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.83 E-value=6.7e-21 Score=156.45 Aligned_cols=91 Identities=44% Similarity=0.640 Sum_probs=75.9
Q ss_pred CccccCCCC-CCcccccCCCCchhHHH-HhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 033676 1 MVTTFGMSE-IGPWSLVDGSQSGDVIM-RMMARNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK 78 (114)
Q Consensus 1 MV~~~GMS~-lG~v~~~~~~~~~~fl~-~~~~~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~ 78 (114)
||++||||+ +|+++|...... .|++ .+...++||++|+..||+||++||++||++|++||++|++.|++||+.|+++
T Consensus 366 mv~~~gm~~~~g~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~l~~~a~~l~~~ 444 (476)
T 2ce7_A 366 MVCQLGMSEELGPLAWGKEEQE-VFLGKEITRLRNYSEEVASKIDEEVKKIVTNCYERAKEIIRKYRKQLDNIVEILLEK 444 (476)
T ss_dssp HHHTSCCCTTTCSCCCCC--------------CCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcCCceeecCCCcc-ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 899999999 999999765421 2774 3445689999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHhhc
Q 033676 79 ETMSGDEFRAILSE 92 (114)
Q Consensus 79 EtL~g~e~~~ll~~ 92 (114)
|||+++||+++++.
T Consensus 445 e~l~~~~~~~~~~~ 458 (476)
T 2ce7_A 445 ETIEGDELRRILSE 458 (476)
T ss_dssp SEEEHHHHHHHTC-
T ss_pred CeeCHHHHHHHhcc
Confidence 99999999999975
No 4
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=89.93 E-value=0.57 Score=30.00 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=33.1
Q ss_pred HHHHHHHHHhHHHHHH------HHHHHHHHhcCCHHHHHHHhhc
Q 033676 55 EIALSQIRNNREAIDK------IVEVLLEKETMSGDEFRAILSE 92 (114)
Q Consensus 55 ~~a~~iL~~nr~~L~~------la~~Lle~EtL~g~e~~~ll~~ 92 (114)
++-+++|+.||..|-. |.+.|+++..|+.++.+.|-..
T Consensus 4 ~~hr~~L~~~r~~Lv~~l~~~~vld~L~~~~vlt~~~~e~I~~~ 47 (97)
T 3ygs_P 4 EADRRLLRRCRLRLVEELQVDQLWDVLLSRELFRPHMIEDIQRA 47 (97)
T ss_dssp HHHHHHHHHTHHHHHHHCCCTTTHHHHHHTTSSCHHHHHHHHTS
T ss_pred HHHHHHHHHhHHHHHHHCcHHHHHHHHHHcCCCCHHHHHHHHhc
Confidence 3567889999988887 9999999999999999999763
No 5
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=85.83 E-value=2.4 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.214 Sum_probs=26.3
Q ss_pred HHHHHHhHHH------HHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676 58 LSQIRNNREA------IDKIVEVLLEKETMSGDEFRAILSE 92 (114)
Q Consensus 58 ~~iL~~nr~~------L~~la~~Lle~EtL~g~e~~~ll~~ 92 (114)
+++|.+||.. ++.|.+.|+++..|+.++...|...
T Consensus 8 r~~L~~~r~~Lv~~l~v~~lld~L~~~~vlt~~~~e~I~~~ 48 (94)
T 2p1h_A 8 RNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRNE 48 (94)
T ss_dssp HHHHHHTHHHHHHHCCHHHHHHHHHHHTSSCHHHHHHHHTS
T ss_pred HHHHHHhHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHcC
Confidence 3444444444 4569999999999999999998764
No 6
>3crd_A Raidd; caspase recruitment domain, apoptosis, homophilic interaction; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=83.20 E-value=0.92 Score=29.03 Aligned_cols=36 Identities=11% Similarity=0.292 Sum_probs=31.0
Q ss_pred HHHHHHHhHHHH------HH-HHHHHHHHhcCCHHHHHHHhhc
Q 033676 57 ALSQIRNNREAI------DK-IVEVLLEKETMSGDEFRAILSE 92 (114)
Q Consensus 57 a~~iL~~nr~~L------~~-la~~Lle~EtL~g~e~~~ll~~ 92 (114)
-+++|..||..| .. +.+.|+++.+|+.++...|...
T Consensus 5 hr~~L~~~r~~L~~~l~~~~~lld~L~~~~VLt~~~~e~I~~~ 47 (100)
T 3crd_A 5 DKQVLRSLRLELGAEVLVEGLVLQYLYQEGILTENHIQEINAQ 47 (100)
T ss_dssp HHHHHHHHHHHHHHSSCSSCSSHHHHHHHTSSCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCcchhHHHHHHHCCCCCHHHHHHHHcC
Confidence 467899999998 44 8999999999999999998764
No 7
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=76.43 E-value=9.9 Score=25.24 Aligned_cols=59 Identities=14% Similarity=0.045 Sum_probs=51.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhh
Q 033676 33 SMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 91 (114)
Q Consensus 33 ~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~ 91 (114)
.++++-.-+|-.+.+.++..-=++|+++|..|=..=-+|+++||---.++.+++-.++.
T Consensus 48 slpp~Ql~eiL~qmK~~~~~nP~~a~~LL~q~PQLAyAl~QalL~m~ivd~~~l~~ll~ 106 (109)
T 2l9b_A 48 KKPKEVQLKFLQKFQEWTRAHPEDAASLLELCPQLSFVTAELLLTNGICKVDDLIPLAS 106 (109)
T ss_dssp TSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHCHHHHHHHHHHHHHHTSSCHHHHTTTC-
T ss_pred cCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHHHHhc
Confidence 34455667889999999999999999999999999999999999999999998877654
No 8
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=75.43 E-value=12 Score=27.02 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCH
Q 033676 36 EKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSG 83 (114)
Q Consensus 36 e~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g 83 (114)
++...+|++-+..|.+++.++|.+|+.+-.+..+.....+++.++...
T Consensus 11 ~~v~~~i~~m~~fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i 58 (233)
T 4efa_E 11 NQVNDELNKMQAFIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNI 58 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999999999999999999999988888888888876433
No 9
>2gpi_A Conserved hypothetical protein; transcriptional regulation of the shikimate pathway, structu genomics, joint center for structural genomics; HET: MSE; 1.60A {Shewanella loihica} SCOP: d.354.1.1
Probab=68.45 E-value=6.3 Score=25.23 Aligned_cols=29 Identities=34% Similarity=0.375 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcCC
Q 033676 54 YEIALSQIRNNREAIDKIVEVLLEKETMS 82 (114)
Q Consensus 54 y~~a~~iL~~nr~~L~~la~~Lle~EtL~ 82 (114)
.+.+..+...||--|+.+|+.|++.|--+
T Consensus 52 ~~~~l~~F~~~R~diEe~Ae~lIe~e~~d 80 (91)
T 2gpi_A 52 SEQALSLFEQFRFDIEEQAEKLIEQEAFD 80 (91)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHccccc
Confidence 45567789999999999999999998654
No 10
>4i16_A Caspase recruitment domain-containing protein 11; CBM complex, helix bundle, scaffold protein, BCL10 and MALT1 phosphorylation, signaling protein; 1.75A {Mus musculus}
Probab=68.11 E-value=5.8 Score=25.56 Aligned_cols=39 Identities=13% Similarity=0.205 Sum_probs=32.3
Q ss_pred HHHHHHHHHhHHHHH------HHHHHHHHHhcCCHHHHHHHhhcc
Q 033676 55 EIALSQIRNNREAID------KIVEVLLEKETMSGDEFRAILSEF 93 (114)
Q Consensus 55 ~~a~~iL~~nr~~L~------~la~~Lle~EtL~g~e~~~ll~~~ 93 (114)
+.++..|..||..|. .+.+.|.++.+||.+|.++|....
T Consensus 3 ~~~~~~L~~~R~~L~~~i~p~~l~~yL~q~~VLt~~deEeI~~~~ 47 (93)
T 4i16_A 3 AALWDNVECNRHMLSRYINPAKLTPYLRQCKVIDEQDEDEVLNAP 47 (93)
T ss_dssp CCTTHHHHTTHHHHHHHCCHHHHHHHHHHTTSSCHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCHHHHHHHhcCc
Confidence 345677888888775 489999999999999999998765
No 11
>3fwc_B Nuclear mRNA export protein SAC3; gene gating, complex, calcium, cell cycle, cell division, mitosis, mRNA transport, nuclear pore complex, nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=66.74 E-value=21 Score=22.44 Aligned_cols=41 Identities=12% Similarity=0.311 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 033676 33 SMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLE 77 (114)
Q Consensus 33 ~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle 77 (114)
-+++-..+.++.|+..+|..+.+ --.+++..++.|++.|..
T Consensus 10 i~~~ii~~vV~~el~~~l~~~l~----~~~~R~~iI~sLs~eLy~ 50 (85)
T 3fwc_B 10 IANDLVKEVVNSSVISIVKREFS----EANYRKDFIDTMTRELYD 50 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHH
Confidence 34455667788888888888875 455778888999888864
No 12
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1, PCF11, structural RNA binding protein complex; 3.30A {Kluyveromyces lactis}
Probab=65.43 E-value=2.2 Score=30.56 Aligned_cols=62 Identities=11% Similarity=0.139 Sum_probs=49.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhccc
Q 033676 33 SMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 94 (114)
Q Consensus 33 ~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~~~ 94 (114)
.+++.-.-+|-.+.+.++...-++|+++|..|-..--+++++|+.-..++.+.+.+++....
T Consensus 53 ~lpp~QL~eiL~qmK~l~~~nP~~ar~LL~~nPQLayAl~QAlL~mgivd~~~l~~v~~~~~ 114 (174)
T 4eba_G 53 KLQKDQQMALLKVIQHFCKDDKETFVALLEEAPQLSYAIAELLLSNGVCSVDQLTQLAMASK 114 (174)
T ss_dssp TSCHHHHHHHHHHHHHGGGC--CCHHHHHHSCTHHHHHHHHHHHHTSCCSSSTHHHHC----
T ss_pred cCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHCchHHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence 34445556777788888888999999999999999999999999999999999999986553
No 13
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=60.94 E-value=35 Score=23.56 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 033676 39 AADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK 78 (114)
Q Consensus 39 ~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~ 78 (114)
.+.-..++..|+.++..+|.+|+.+++..-+.+.+.-+++
T Consensus 8 ~~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~ 47 (187)
T 3v6i_A 8 SQEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERA 47 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444566666666666666666666666666665554443
No 14
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=58.45 E-value=9.6 Score=24.47 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676 67 AIDKIVEVLLEKETMSGDEFRAILSE 92 (114)
Q Consensus 67 ~L~~la~~Lle~EtL~g~e~~~ll~~ 92 (114)
.++.+-+.|+++..|+.+| ..+...
T Consensus 28 ~V~~lLD~LL~~~VL~~ee-~~I~~~ 52 (98)
T 2nz7_A 28 NTQCLVDNLLKNDYFSAED-AEIVCA 52 (98)
T ss_dssp CCHHHHHHHHHTTSSCHHH-HHHHHT
T ss_pred hHHHHHHHHHHcCCCCHHH-HHHHcc
Confidence 4567789999999999999 888753
No 15
>4dah_A Sporulation kinase D; alpha-beta-alpha structure, structural genomics, midwest CEN structural genomics (MCSG), PSI-biology, PAS-like fold; 2.03A {Bacillus subtilis} PDB: 4dbj_A 4dbi_A 4dak_A 3fos_A
Probab=54.07 E-value=42 Score=22.62 Aligned_cols=57 Identities=11% Similarity=0.073 Sum_probs=42.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhcc
Q 033676 35 SEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 93 (114)
Q Consensus 35 Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~~ 93 (114)
.+...+...+....+.+..-......|..+...|+.+|..+-. .. +.+++..++...
T Consensus 7 ~~~~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~l~~la~~~~~-~~-~~~~~~~~L~~~ 63 (217)
T 4dah_A 7 KDTIAAEHKQEASVLLNLHRNKINYLIGETMARMTSLSIAIDR-PV-DIKKMQSILEKT 63 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS-SC-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CC-CHHHHHHHHHHH
Confidence 3456667777778888888888889999999999999994422 11 777887777543
No 16
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=51.89 E-value=15 Score=21.92 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676 54 YEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92 (114)
Q Consensus 54 y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~ 92 (114)
.+.-..+|.+|.+.. ++-+.|+--..|+.+||.+-...
T Consensus 16 Le~k~rlL~eN~~L~-qLyk~LV~s~vIse~eFW~~r~~ 53 (61)
T 2dii_A 16 LEEKNRMLQEDPVLF-QLYKDLVVSQVISAEEFWANRLN 53 (61)
T ss_dssp HHHHHHHHHHCHHHH-HHHHHHHTTTSSCHHHHHHHHCS
T ss_pred HHHHHHHHHhCHHHH-HHHHHHHHhCcCCHHHHHHHHHH
Confidence 345567889998876 88888999999999999986543
No 17
>3li9_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; HET: BTB; 1.70A {Methanosarcina mazei} PDB: 3li8_A* 3lia_A*
Probab=47.81 E-value=61 Score=22.80 Aligned_cols=55 Identities=9% Similarity=0.035 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhcc
Q 033676 39 AADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 93 (114)
Q Consensus 39 ~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~~ 93 (114)
.+.+.+......+..-+.....|.++...++.+|..+-.....+.+++..++...
T Consensus 11 ~~~~~~~~~~~a~~~a~~i~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~ 65 (291)
T 3li9_A 11 EKLAYEKSIEMAGNYANQFDAQMEANQAIARTLACTMAEYGSQDREEAMSIIKRI 65 (291)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4455666667777777777778888899999999887665566788887777543
No 18
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=46.77 E-value=34 Score=28.33 Aligned_cols=46 Identities=7% Similarity=0.102 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhcc
Q 033676 48 RLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 93 (114)
Q Consensus 48 ~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~~ 93 (114)
++|+.+.+-..+|++..+..|++|+++|.+.+.+--.+=++++..+
T Consensus 149 ~~LekAl~s~~~i~~~e~~~l~~L~~AL~kE~~~Rt~dE~~mi~~y 194 (526)
T 3iyk_A 149 DILNKAVTSYNKILTEEDLQMRRLATALQKEIGERTHAETVMVKEY 194 (526)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcHHHHHHHHHH
Confidence 4577777888889999999999999999999988877777777654
No 19
>3lib_A Hypothetical sensory transduction histidine kinas; PDC fold, signaling protein; 2.99A {Methanosarcina mazei}
Probab=46.01 E-value=63 Score=22.71 Aligned_cols=55 Identities=15% Similarity=0.055 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhcc
Q 033676 39 AADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 93 (114)
Q Consensus 39 ~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~~ 93 (114)
.+.+........+..-......|..+...++.||..+-.....+.+++..++...
T Consensus 10 ~~~~~~~~~~~a~~~a~~i~~~l~~~~~~~~~la~~~~~~~~~~~~~~~~~l~~~ 64 (290)
T 3lib_A 10 EKLAYQQSVEMASNYANQFDADMKANLAIARTISTTMESYETADRDEALLILENL 64 (290)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3444555666666666667777888888888888887665667788887777543
No 20
>4e9m_A Nucleotide-binding oligomerization domain-contain protein 1; innate immunity, RIPK2, protein binding; HET: FLC; 2.15A {Homo sapiens} PDB: 2b1w_A 2dbd_A
Probab=45.30 E-value=42 Score=23.23 Aligned_cols=22 Identities=18% Similarity=0.368 Sum_probs=18.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHh
Q 033676 69 DKIVEVLLEKETMSGDEFRAIL 90 (114)
Q Consensus 69 ~~la~~Lle~EtL~g~e~~~ll 90 (114)
+-+-+.|+++..|+.+|.+.+.
T Consensus 44 ~~LLD~LL~~gvLs~EE~EiV~ 65 (144)
T 4e9m_A 44 QCLVDNLLKNDYFSAEDAEIVC 65 (144)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHh
Confidence 6778899999999999995553
No 21
>3a8g_B NitrIle hydratase subunit beta; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 2ahj_B 2cyz_B* 2cz0_B 2cz6_B 2cz7_B 2d0q_B 2cz1_B 2zcf_B 2zpb_B 2zpe_B 2zpf_B 2zpg_B 2zph_B 2zpi_B 2qdy_B 3a8h_B 3a8l_B 3a8o_B 3a8m_B 1ahj_B
Probab=38.83 E-value=82 Score=22.91 Aligned_cols=31 Identities=13% Similarity=0.263 Sum_probs=26.7
Q ss_pred HHhHHHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676 62 RNNREAIDKIVEVLLEKETMSGDEFRAILSE 92 (114)
Q Consensus 62 ~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~ 92 (114)
.=+..=|..+...|+++-.|+.+||.++++.
T Consensus 71 sYYe~WL~ale~lLvekGvit~~EL~~~~g~ 101 (212)
T 3a8g_B 71 PYYERYVIGVATLMVEKGILTQDELESLAGG 101 (212)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHhhhcc
Confidence 3456778999999999999999999997765
No 22
>1oxw_A Patatin; alpha/beta class fold with approximately three layers; 2.20A {Solanum cardiophyllum} SCOP: c.19.1.3
Probab=36.22 E-value=16 Score=28.29 Aligned_cols=31 Identities=10% Similarity=0.276 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHh
Q 033676 49 LSDRAYEIALSQIRN---------NREAIDKIVEVLLEKE 79 (114)
Q Consensus 49 il~~~y~~a~~iL~~---------nr~~L~~la~~Lle~E 79 (114)
-++...+.+.++|.+ |++.|+++|+.|.++.
T Consensus 325 ~l~~L~~~~~~~l~~~~~~~~~~tn~~~l~~~a~~L~~e~ 364 (373)
T 1oxw_A 325 NMELLVQVGENLLKKPVSEDNPETYEEALKRFAKLLSDRK 364 (373)
T ss_dssp HHHHHHHHHHHHHTSBSSSSCCCBHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHh
Confidence 344445566667766 7777777777776653
No 23
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=36.10 E-value=1.2e+02 Score=26.24 Aligned_cols=51 Identities=6% Similarity=0.122 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH--hcCCHHHHHHHhhccc
Q 033676 44 AAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK--ETMSGDEFRAILSEFV 94 (114)
Q Consensus 44 ~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~--EtL~g~e~~~ll~~~~ 94 (114)
..|.++|+.-.++=.+.|.+-...|+++++.+-++ .+|+|++.-.|.+.++
T Consensus 410 ~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyG 462 (752)
T 2zze_A 410 DIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHG 462 (752)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccC
Confidence 46888999999999999999999999999888553 6799999998887664
No 24
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=35.96 E-value=60 Score=22.77 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----------HHHHHHhcCCHHHHHHH
Q 033676 41 DIDAAVKRLSDRAYEIALSQIRNNREAIDKIV----------EVLLEKETMSGDEFRAI 89 (114)
Q Consensus 41 ~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la----------~~Lle~EtL~g~e~~~l 89 (114)
-||++..+++++.|.-++..-...+ .-+++. ..|..++.++.+|+..+
T Consensus 7 fIDdtsselLD~lyrl~K~~t~nkk-eA~kv~KniIKi~vKigvl~rn~qf~~eEl~~~ 64 (161)
T 3f4m_A 7 FIDETSSEVLDELYRVSKEYTHSRP-QAQRVIKDLIKVAIKVAVLHRNGSFGPSELALA 64 (161)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred hcCccHHHHHHHHHHHHHHHhcCHH-HHHHHHHHHHHHHHHhheeeecCCCCHHHHHHH
Confidence 3566666666666665554443222 222222 35677899999998754
No 25
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=35.34 E-value=1.2e+02 Score=24.73 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-h-cCCHHHHHHHhhcccC
Q 033676 44 AAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEK-E-TMSGDEFRAILSEFVE 95 (114)
Q Consensus 44 ~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~-E-tL~g~e~~~ll~~~~~ 95 (114)
..|.++|+.-.++=.+.|.+-...|+++++.|-++ + +|+|++.-.|.+.++-
T Consensus 340 ~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~~~~l~G~~af~LyDTyGf 393 (465)
T 1yfs_A 340 EFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGF 393 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHhhhhccCC
Confidence 46899999999999999999999999999988552 3 6999999999887753
No 26
>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}
Probab=34.50 E-value=63 Score=18.10 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033676 39 AADIDAAVKRLSDRAYEIALSQIRNNREAIDK 70 (114)
Q Consensus 39 ~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~ 70 (114)
.+.-..++..|+.++..++.+|+.+-+...+.
T Consensus 16 ~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae~ 47 (52)
T 2kk7_A 16 LDDAKAEANKIISEAEAEKAKILEKAKEEAEK 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34446666777777777777777766655443
No 27
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=33.19 E-value=1.2e+02 Score=20.78 Aligned_cols=54 Identities=19% Similarity=0.193 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676 38 LAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92 (114)
Q Consensus 38 t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~ 92 (114)
..+........+....-+.....|......|+.+++.+-. ...+.+++..++..
T Consensus 9 ~~~~~~~~~~~~a~~~a~~i~~~l~~~~~~l~~la~~~~~-~~~~~~~~~~~L~~ 62 (254)
T 3lif_A 9 ALAQSETEMRNLSHSLAEHATHTFQGADVVLDDIVSFMKW-RPHPSPVFNERLRA 62 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCChHHHHHHHHH
Confidence 4566677788888888888888999999999999998754 45566667666643
No 28
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=31.95 E-value=1.3e+02 Score=21.05 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676 43 DAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSE 92 (114)
Q Consensus 43 D~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~ 92 (114)
..++++|.++.+.+...+-.+ ......=-+.|+..++.|.+.|+++..+
T Consensus 73 q~ql~~I~~e~r~~~~~Lr~q-l~akr~EL~aL~~a~~~DeakI~aL~~E 121 (175)
T 3lay_A 73 QATAQKIYDDYYTQTSALRQQ-LISKRYEYNALLTASSPDTAKINAVAKE 121 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 567788888888877765322 2222333345777899999999988754
No 29
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=31.10 E-value=78 Score=22.57 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=38.2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhh
Q 033676 31 RNSMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILS 91 (114)
Q Consensus 31 ~~~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~ 91 (114)
+...+++.-..|-.+ .....+++.|..+|...-..-..|.+.|.+++ .+.+.+.+++.
T Consensus 43 g~el~~e~~~~i~~~--~~~~~a~~~Al~~Ls~r~~S~~EL~~KL~~kg-~~~e~i~~vl~ 100 (221)
T 3d5l_A 43 GTELDEKQIAAIATA--DQQAKAYSRMLDYLSYQMRTESDIVKKLKEID-TPEEFVEPILK 100 (221)
T ss_dssp TCEECHHHHHHHHHH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHTT-CCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh--HHHHHHHHHHHHHhccccccHHHHHHHHHhcC-CCHHHHHHHHH
Confidence 356666554444433 33678889999998877666666777777665 56677766654
No 30
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=30.82 E-value=91 Score=18.82 Aligned_cols=43 Identities=21% Similarity=0.322 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcC
Q 033676 38 LAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIVEVLLEKETM 81 (114)
Q Consensus 38 t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la~~Lle~EtL 81 (114)
.-..+|.+||+++.--.+--.+++..|-+. +++-.+|.--..|
T Consensus 10 lF~eLD~diReLLSlvheIKID~It~n~~k-ekvekAlfLsq~I 52 (69)
T 1skv_A 10 LFEMLDEDVRELLSLIHEIKIDRITGNMDK-QKLGKAYFQVQKI 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccCCCH-HHHHHHHHHHHHH
Confidence 567899999999999999888888887643 4555555444333
No 31
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=30.73 E-value=1.3e+02 Score=20.69 Aligned_cols=30 Identities=13% Similarity=0.143 Sum_probs=22.7
Q ss_pred HhcCCHHHHHHHhhcccCCCCcCcCCCCCC
Q 033676 78 KETMSGDEFRAILSEFVEIPSENRVAPAVP 107 (114)
Q Consensus 78 ~EtL~g~e~~~ll~~~~~~~~~~~~~~~~~ 107 (114)
+.||+++||...+...+.-......+..+|
T Consensus 55 RKTv~a~DV~~a~~~lg~~~v~d~~~l~lP 84 (154)
T 1f1e_A 55 KKTLMEEHLKALADVLMVEGVEDYDGELFG 84 (154)
T ss_dssp CSEECHHHHHHHHHHHTCTTSTTCCSCCCC
T ss_pred CCcCCHHHHHHHHHhcccccCCccccccCC
Confidence 469999999999877666666666666666
No 32
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=28.99 E-value=1.1e+02 Score=23.17 Aligned_cols=34 Identities=15% Similarity=0.224 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHH
Q 033676 45 AVKRLSDRAYEIALSQIR---------NNREAIDKIVEVLLEK 78 (114)
Q Consensus 45 eV~~il~~~y~~a~~iL~---------~nr~~L~~la~~Lle~ 78 (114)
.++.++....++|++.|. ..++.|..+++.++++
T Consensus 286 ~a~~~~~~~~~~A~~~L~~~i~~lp~~~~~~~L~~l~~~~~~R 328 (330)
T 1wmw_A 286 WAKAEAKRLQAEGLALLEAAFQDLPGKEALDHLRGLLAALVER 328 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHTGGGGCSCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHhc
Confidence 445556666667777776 4566777777777654
No 33
>1ugp_B NitrIle hydratase beta subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: b.34.4.4 PDB: 1ire_B 1ugq_B 1ugr_B 1ugs_B
Probab=28.89 E-value=77 Score=23.29 Aligned_cols=34 Identities=9% Similarity=0.007 Sum_probs=27.4
Q ss_pred HHhHHHHHHHHHHHHHHhcCCHHHHHHHhhcccC
Q 033676 62 RNNREAIDKIVEVLLEKETMSGDEFRAILSEFVE 95 (114)
Q Consensus 62 ~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~~~~ 95 (114)
.=+..=|..+...|+++-.|+.+||.+....+..
T Consensus 67 ~YYe~Wl~ale~lLvekGvit~~EL~ar~~~~~~ 100 (226)
T 1ugp_B 67 PYYWHWIRTYIHHGVRTGKIDLEELERRTQYYRE 100 (226)
T ss_dssp CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhcc
Confidence 3456678999999999999999999887655443
No 34
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=27.63 E-value=38 Score=22.14 Aligned_cols=31 Identities=6% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHhhcccCC
Q 033676 66 EAIDKIVEVLLEKETMSGDEFRAILSEFVEI 96 (114)
Q Consensus 66 ~~L~~la~~Lle~EtL~g~e~~~ll~~~~~~ 96 (114)
+.+..+|..|.++-.++..||+..+......
T Consensus 42 eev~~Va~~L~~~~~i~~~dI~~~I~~vt~~ 72 (103)
T 2kvc_A 42 DEVKAVANELMRLGDFDQIDIGVVITHFTDE 72 (103)
T ss_dssp HHHHHHHHHHHHHTSSCSSCHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHhcc
Confidence 4566777777777679999999988765433
No 35
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=26.23 E-value=70 Score=26.07 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhccc
Q 033676 53 AYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEFV 94 (114)
Q Consensus 53 ~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~~~ 94 (114)
.|+.|.++-++-...=..+.+.+++...|+.++|+++++...
T Consensus 444 Gy~~a~~iak~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~~ 485 (490)
T 3e04_A 444 GYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKD 485 (490)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHHTSCCHHHHHHHCCGGG
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHcCCCCHHHHHHHcCHHH
Confidence 455555554433333234556677888899999999997643
No 36
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=26.14 E-value=59 Score=26.46 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHhcCCHHHHHHHhhcc
Q 033676 53 AYEIALSQIRNNREAIDKIVEVLLEKETMSGDEFRAILSEF 93 (114)
Q Consensus 53 ~y~~a~~iL~~nr~~L~~la~~Lle~EtL~g~e~~~ll~~~ 93 (114)
.|+.|.++-++-...=..+.+.+++...|+.++|+++++..
T Consensus 438 Gy~~a~~ia~~A~~~g~~l~e~~~~~~~ls~eeld~~ldP~ 478 (482)
T 3gtd_A 438 GYDNAAKIAKEAHKYGITLKEAAKKLNFLSEEEFDKIVVPE 478 (482)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHHHTTSCCHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHcCHH
Confidence 45555555443333223455667778889999999999653
No 37
>1dgn_A Iceberg (protease inhibitor); antiparallel six-helix bundle, greek-KEY, hydrolase inhibitor; NMR {Homo sapiens} SCOP: a.77.1.3
Probab=24.81 E-value=1e+02 Score=18.89 Aligned_cols=27 Identities=26% Similarity=0.546 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHhhc
Q 033676 66 EAIDKIVEVLLEKETMSGDEFRAILSE 92 (114)
Q Consensus 66 ~~L~~la~~Lle~EtL~g~e~~~ll~~ 92 (114)
..+.-|-+.|+++.+|+.+|...+-..
T Consensus 19 ~~i~~lLD~Ll~~~VLn~~E~e~i~~~ 45 (89)
T 1dgn_A 19 GTINALLDCLLEDEVISQEDMNKVRDE 45 (89)
T ss_dssp HHHHHHHHHHHHHTCSCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCcccHHHHHHHHhc
Confidence 677888999999999999999988754
No 38
>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J
Probab=24.70 E-value=1.7e+02 Score=19.94 Aligned_cols=35 Identities=17% Similarity=0.216 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033676 38 LAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIV 72 (114)
Q Consensus 38 t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la 72 (114)
....-..+...|+.++.++|..+........+.-+
T Consensus 18 I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~ 52 (187)
T 3v6i_A 18 LLQEAEAKAEAVKREAEEKAKALLQARERALEAQY 52 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555556666666666555555444443333
No 39
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=24.59 E-value=80 Score=22.76 Aligned_cols=38 Identities=18% Similarity=0.170 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 033676 33 SMSEKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDK 70 (114)
Q Consensus 33 ~~Se~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~ 70 (114)
--|+..+..|-+++..++...|....+++.+-|+.+..
T Consensus 148 G~sP~la~~iR~~ie~~lp~~~~~~~~~~~~~R~~vk~ 185 (223)
T 3dfz_A 148 GASPLLTKRIKEDLSSNYDESYTQYTQFLYECRVLIHR 185 (223)
T ss_dssp TSCHHHHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999988864
No 40
>1ybk_A Tetrabrachion; right hand coiled coil, protein binding; HET: BEQ; 1.45A {Staphylothermus marinus} PDB: 1fe6_A
Probab=24.33 E-value=99 Score=17.15 Aligned_cols=37 Identities=22% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 033676 36 EKLAADIDAAVKRLSDRAYEIALSQIRNNREAIDKIV 72 (114)
Q Consensus 36 e~t~~~iD~eV~~il~~~y~~a~~iL~~nr~~L~~la 72 (114)
.+|++.|---..-|+++.|+--+++++-.-+.|+-+.
T Consensus 5 netaddivyrltviiddryeslknlitlradrlemii 41 (52)
T 1ybk_A 5 NETADDIVYRLTVIIDDRYESLKNLITLRADRLEMII 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccceeEEEEEEEccHHHHHHHHHhhhhhhhhhhh
Confidence 3566667667778899999999999988887777553
No 41
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=23.84 E-value=1.4e+02 Score=23.52 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=24.3
Q ss_pred HHHHHHhHHHH------HHHHHHHHHHhcCCHHHHHHHhh
Q 033676 58 LSQIRNNREAI------DKIVEVLLEKETMSGDEFRAILS 91 (114)
Q Consensus 58 ~~iL~~nr~~L------~~la~~Lle~EtL~g~e~~~ll~ 91 (114)
+++|+.|+..| +.+.+.|+.+..++.+++..+..
T Consensus 6 r~~l~~~~~~l~~~~~~~~~~~~l~~~~i~~~~~~~~i~~ 45 (591)
T 1z6t_A 6 RNCLLQHREALEKDIKTSYIMDHMISDGFLTISEEEKVRN 45 (591)
T ss_dssp HHHHHHTHHHHHHHCCHHHHHHHHHHTTSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHcCCCCHHHHHHHHc
Confidence 44555555554 46888899999999888877764
No 42
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=23.72 E-value=55 Score=18.35 Aligned_cols=40 Identities=13% Similarity=0.219 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHhc
Q 033676 41 DIDAAVKRLSDRAYE--IALSQIRNNREAIDKIVEVLLEKET 80 (114)
Q Consensus 41 ~iD~eV~~il~~~y~--~a~~iL~~nr~~L~~la~~Lle~Et 80 (114)
.++.+|..++..-|+ .|.+-|.--+.-++.-++.|+|.-+
T Consensus 3 ~~e~~I~~L~s~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~~ 44 (46)
T 2oo9_A 3 QLSSEIENLMSQGYSYQDIQKALVIAQNNIEMAKNILREFAA 44 (46)
T ss_dssp HHHHHHHHHHHTTBCHHHHHHHHHHTTTCHHHHHHHHHHHCC
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHhhccHHHHHHHHHHhcc
Confidence 467788888887764 4566666666667777777776543
No 43
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=22.25 E-value=44 Score=20.64 Aligned_cols=25 Identities=4% Similarity=0.223 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHH
Q 033676 50 SDRAYEIALSQIRNNREAIDKIVEV 74 (114)
Q Consensus 50 l~~~y~~a~~iL~~nr~~L~~la~~ 74 (114)
+.+.|+++..|+..|.++|.....-
T Consensus 55 ~~eV~~~V~~Lf~~hpDLl~~F~~F 79 (85)
T 1e91_A 55 EEEVFTEVANLFRGQEDLLSEFGQF 79 (85)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3567888999999999988766443
No 44
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=21.79 E-value=31 Score=19.89 Aligned_cols=40 Identities=15% Similarity=0.263 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHH
Q 033676 39 AADIDAAVKRLSDRAYE--IALSQIRNNREAIDKIVEVLLEK 78 (114)
Q Consensus 39 ~~~iD~eV~~il~~~y~--~a~~iL~~nr~~L~~la~~Lle~ 78 (114)
...++.+|.+|+..-|+ .|.+-|..-+.-++.-+..|+|-
T Consensus 8 ~~~~~~~Ia~Lm~mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 8 LENVDAKIAKLMGEGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp ---CHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHcCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 34567889999988765 46677777777777777777763
No 45
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=21.26 E-value=97 Score=23.51 Aligned_cols=38 Identities=18% Similarity=0.355 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHhcCC
Q 033676 45 AVKRLSDRAYEIALSQIR---NNREAIDKIVEVLLEKETMS 82 (114)
Q Consensus 45 eV~~il~~~y~~a~~iL~---~nr~~L~~la~~Lle~EtL~ 82 (114)
..+...++..++|++.|. .+++.|..+++.++++..|+
T Consensus 265 ~a~~~a~~~~~~A~~~L~~l~~~~~~L~~la~~~~~R~~~~ 305 (313)
T 3lom_A 265 QLEEEIAVHYQIAMDSLRLFGSKAAALIELTKQLQNRSNLS 305 (313)
T ss_dssp HHHHHHHHHHHHHHHTTTTTGGGGHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHhccccc
Confidence 345556666666666554 46789999999999988776
No 46
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=21.14 E-value=1.5e+02 Score=18.04 Aligned_cols=20 Identities=35% Similarity=0.464 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCHHHHHHHhh
Q 033676 72 VEVLLEKETMSGDEFRAILS 91 (114)
Q Consensus 72 a~~Lle~EtL~g~e~~~ll~ 91 (114)
...+++.+.++.+|+..+..
T Consensus 99 ~~~~~~~~~ls~ee~~~l~~ 118 (123)
T 1okr_A 99 VLNFVEKEDLSQDEIEELRN 118 (123)
T ss_dssp HHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHH
Confidence 55777778999999988764
No 47
>1y9b_A Conserved hypothetical protein; MCSG, structural genomics, conserved hypoth protein, PSI, protein structure initiative; 2.20A {Vibrio cholerae o1 biovar eltor} SCOP: a.43.1.9
Probab=20.69 E-value=1.1e+02 Score=18.97 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q 033676 49 LSDRAYEIALSQIRNNREA 67 (114)
Q Consensus 49 il~~~y~~a~~iL~~nr~~ 67 (114)
+++.++++|.++|.+|+-.
T Consensus 36 v~~aa~~~A~~vi~~~~~~ 54 (90)
T 1y9b_A 36 VLNAAIEKAKQVIEREQAL 54 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccee
Confidence 5666777777777766544
No 48
>2kjg_A Archaeal protein SSO6904; hypothetical protein, helical protein, metal binding protein; NMR {Sulfolobus solfataricus}
Probab=20.40 E-value=1.8e+02 Score=18.59 Aligned_cols=38 Identities=26% Similarity=0.425 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHh-cCCHHHHHHHh
Q 033676 53 AYEIALSQIRNNREAIDKIVEVLLEKE-TMSGDEFRAIL 90 (114)
Q Consensus 53 ~y~~a~~iL~~nr~~L~~la~~Lle~E-tL~g~e~~~ll 90 (114)
.|..-.+-.++||+..+.++..|-+.- .|--+-+..++
T Consensus 48 ~Yanh~~~V~knk~fy~li~~IlekYs~KiGiEnV~eLI 86 (99)
T 2kjg_A 48 VYSSHLDEIRKNKEFYDMIAEILQRYYKKIGIENVNQLI 86 (99)
T ss_dssp HHHHTHHHHHHTHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCccccchhHHHHH
Confidence 466666788999999999999887764 34444455443
No 49
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=20.30 E-value=72 Score=19.37 Aligned_cols=24 Identities=4% Similarity=-0.060 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHH
Q 033676 51 DRAYEIALSQIRNNREAIDKIVEV 74 (114)
Q Consensus 51 ~~~y~~a~~iL~~nr~~L~~la~~ 74 (114)
...|+++..|++.|.++|.-...-
T Consensus 49 ~~v~~rV~~Lf~~hpdLi~gFn~F 72 (80)
T 2cr7_A 49 PGVIRRVSQLFHEHPDLIVGFNAF 72 (80)
T ss_dssp HHHHHHHHHHGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467888889999998888765443
No 50
>4fm4_B NitrIle hydratase beta subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=20.24 E-value=1.3e+02 Score=21.64 Aligned_cols=30 Identities=20% Similarity=0.242 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHhhcc
Q 033676 64 NREAIDKIVEVLLEKETMSGDEFRAILSEF 93 (114)
Q Consensus 64 nr~~L~~la~~Lle~EtL~g~e~~~ll~~~ 93 (114)
+..=|..+...|+++..|+.+||.+-+...
T Consensus 69 Ye~Wl~ale~lLvekG~it~~EL~a~~~~~ 98 (206)
T 4fm4_B 69 FERVFTTAVTLCIEKGVFTAAELEAKLGTS 98 (206)
T ss_dssp HHHHHHHHHHHHHHTTSSCHHHHHHHSSSC
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHhhccccc
Confidence 555689999999999999999999876544
No 51
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=20.03 E-value=67 Score=26.09 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCHHHHHHHhhcc
Q 033676 71 IVEVLLEKETMSGDEFRAILSEF 93 (114)
Q Consensus 71 la~~Lle~EtL~g~e~~~ll~~~ 93 (114)
+.+.+++..-|+.+||+++++..
T Consensus 467 lre~~~~~~~ls~eeld~lldP~ 489 (495)
T 4hgv_A 467 LREEAVGGGYVTDEEFDAVVRPE 489 (495)
T ss_dssp HHHHHHTTTSSCHHHHHHHCCGG
T ss_pred HHHHHHHcCCCCHHHHHHhCCHH
Confidence 44566777789999999998643
Done!