BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033677
(114 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NS 60
FRCH + + PVN + FSP + + G ++G ++ W+ Q+R+++ +F+ +S
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 61 VASLSYNHGGQLLAVASSCTYQEATVIEE 89
V ++ + LA + T++ I++
Sbjct: 297 VVKIACSDNILCLATSDD-TFKTNAAIDQ 324
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NS 60
FRCH + + PVN + FSP + + G ++G ++ W+ Q+R+++ +F+ +S
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 61 VASLSYNHGGQLLAVASSCTYQEATVIEE 89
V ++ + LA + T++ I++
Sbjct: 297 VVKIACSDNILCLATSDD-TFKTNAAIDQ 324
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2 FRCHPKS---KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS 58
F+CH + + VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315
Query: 59 NSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
+++ +NH G + A ASS + + P
Sbjct: 316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NS 60
FRCH + + PVN + FSP + + G ++G ++ W+ Q+R+++ +F+ +S
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 61 VASLSYNHGGQLLAVASSCTYQEATVIEE 89
V ++ + LA + T++ I++
Sbjct: 297 VVKIACSDNILCLATSDD-TFKTNAAIDQ 324
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/89 (24%), Positives = 47/89 (52%), Gaps = 3/89 (3%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NS 60
FRCH + + PVN + FSP + + G ++G ++ W+ Q+R+++ +F+ +S
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 61 VASLSYNHGGQLLAVASSCTYQEATVIEE 89
V ++ + LA + T++ I++
Sbjct: 297 VVKIACSDNILCLATSDD-TFKTNAAIDQ 324
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>pdb|3VGZ|A Chain A, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|B Chain B, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|C Chain C, Crystal Structure Of E. Coli Ynce
pdb|3VGZ|D Chain D, Crystal Structure Of E. Coli Ynce
Length = 353
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 21 VVFSPLSRGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHGGQLLAVA-- 76
V+F+P A+VT G V+ DA+S + + F+ P NS+A LS + G+ L V+
Sbjct: 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLA-LSAD--GKTLYVSVK 333
Query: 77 -SSCTYQEAT 85
S QEAT
Sbjct: 334 QKSTKQQEAT 343
>pdb|3VH0|A Chain A, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|B Chain B, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|C Chain C, Crystal Structure Of E. Coli Ynce Complexed With Dna
pdb|3VH0|D Chain D, Crystal Structure Of E. Coli Ynce Complexed With Dna
Length = 353
Score = 31.2 bits (69), Expect = 0.17, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 8/70 (11%)
Query: 21 VVFSPLSRGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHGGQLLAVA-- 76
V+F+P A+VT G V+ DA+S + + F+ P NS+A LS + G+ L V+
Sbjct: 277 VLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLA-LSAD--GKTLYVSVK 333
Query: 77 -SSCTYQEAT 85
S QEAT
Sbjct: 334 QKSTKQQEAT 343
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 30.0 bits (66), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 139 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 192
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 30.0 bits (66), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 137 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 190
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 115 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 115 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 168
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 121 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 121 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 111 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 164
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 30.0 bits (66), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 116 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 169
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 114 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 167
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 121 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 174
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 120 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 173
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 29.6 bits (65), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 132 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 185
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 29.6 bits (65), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 29.6 bits (65), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ + L LP S+ V+++ +N G L+ +S
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 28.9 bits (63), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 31 FVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN 67
G + V WD Q ++RL + S V SLS+N
Sbjct: 162 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 198
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 32 VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80
+TG ++ + +D+ +++ L +L V +L Y HGG L++ ++ T
Sbjct: 136 ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 31 FVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN 67
G + V WD Q ++RL + S V SLS+N
Sbjct: 173 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 209
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 28.9 bits (63), Expect = 0.71, Method: Composition-based stats.
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 32 VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80
+TG ++ + +D+ +++ L +L V +L Y HGG L++ ++ T
Sbjct: 136 ITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRT 184
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 31 FVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN 67
G + V WD Q ++RL + S V SLS+N
Sbjct: 82 LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN 118
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ L LP S+ V+++ +N G L+ +S
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
F+P S V+G + V WD ++ L LP S+ V+++ +N G L+ +S
Sbjct: 118 FNPQSN-LIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSS 171
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 14 HLVPVNDVVFSP-LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQL 72
H V+ V FSP L V+G + V WD + R + +L +N V S++ + G L
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 73 LA 74
A
Sbjct: 211 CA 212
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 33 TGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
TG + V +WD + R+L + F++ + SL Y G+ LAV + E + +P
Sbjct: 200 TGGLDNTVRSWDLREGRQL-QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 43 WDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
W RL LPR +SV + Y GG ++V
Sbjct: 134 WKGAEPLRLGHLPRLQDSVTVVGYPLGGDTISVTK 168
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 28 RGAFVTGDNEGYVAAWDAQSRRRLF------ELPRFSNSVASLSYNHGGQLLAVA 76
RG TG N G V + + R L+ + SNS+ S+ ++ G LLA+A
Sbjct: 197 RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 251
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 28 RGAFVTGDNEGYVAAWDAQSRRRLFE------LPRFSNSVASLSYNHGGQLLAVA 76
RG TG N G V + + R L+ + SNS+ S+ ++ G LLA+A
Sbjct: 207 RGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIA 261
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 18 VNDVVFSPLSRGAFV-TGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA 76
+ V FSP G F+ TG + + WD ++R+ + L + SL Y G L
Sbjct: 126 IRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 77 S 77
S
Sbjct: 184 S 184
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 7 KSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ 46
K D R HL V+ V+FSP +F+T ++ + W+ +
Sbjct: 874 KVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETK 912
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 26.2 bits (56), Expect = 4.9, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 7 KSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ 46
K D R HL V+ V+FSP +F+T ++ + W+ +
Sbjct: 881 KVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETK 919
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS 47
H VN + F+P S TG + VA WD ++
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 313
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 25.8 bits (55), Expect = 6.7, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS 47
H VN + F+P S TG + VA WD ++
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 309
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS 47
H VN + F+P S TG + VA WD ++
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 311
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 25.8 bits (55), Expect = 7.0, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS 47
H VN + F+P S TG + VA WD ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS 47
H VN + F+P S TG + VA WD ++
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 305
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 25.8 bits (55), Expect = 7.1, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS 47
H VN + F+P S TG + VA WD ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRN 307
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,210,484
Number of Sequences: 62578
Number of extensions: 105716
Number of successful extensions: 185
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 52
length of query: 114
length of database: 14,973,337
effective HSP length: 77
effective length of query: 37
effective length of database: 10,154,831
effective search space: 375728747
effective search space used: 375728747
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)