BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033677
(114 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54DM1|BUB3_DICDI Mitotic checkpoint protein bub3 OS=Dictyostelium discoideum GN=bub3
PE=3 SV=1
Length = 331
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/97 (40%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
F+CH ++ G + PVN + F+P G F TG + V WD +R+RL L + S+
Sbjct: 226 FKCHRLTESGVDVVYPVNCIAFNP-HYGTFATGGCDKNVFFWDGANRKRLHALKTYPTSI 284
Query: 62 ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRI 98
+S+S+N G +LAVASS T++E P QIFI I
Sbjct: 285 SSMSFNTDGNILAVASSYTFEEGEKDHPPDQIFIHNI 321
>sp|Q9YGY3|BUB3_XENLA Mitotic checkpoint protein BUB3 OS=Xenopus laevis GN=bub3 PE=1 SV=1
Length = 330
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
F+CH ++ + PVN V F L F TG ++G+V WD +++RL + R+ S+
Sbjct: 227 FKCHRLKENNIEQIYPVNAVSFHNL-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 285
Query: 62 ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
ASL++++ G LA+A+S Y+ + I+I ++ D + +
Sbjct: 286 ASLAFSNDGSTLAIAASYMYEMDDIDHPEDAIYIRQVTDAETK 328
>sp|Q5RB58|BUB3_PONAB Mitotic checkpoint protein BUB3 OS=Pongo abelii GN=BUB3 PE=2 SV=1
Length = 328
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
F+CH ++ + PVN + F + F TG ++G+V WD +++RL + R+ S+
Sbjct: 221 FKCHRLKENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 279
Query: 62 ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
ASL++++ G LA+ASS Y+ IFI ++ D + +
Sbjct: 280 ASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETK 322
>sp|O43684|BUB3_HUMAN Mitotic checkpoint protein BUB3 OS=Homo sapiens GN=BUB3 PE=1 SV=1
Length = 328
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
F+CH ++ + PVN + F + F TG ++G+V WD +++RL + R+ S+
Sbjct: 221 FKCHRLKENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 279
Query: 62 ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
ASL++++ G LA+ASS Y+ IFI ++ D + +
Sbjct: 280 ASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETK 322
>sp|Q9WVA3|BUB3_MOUSE Mitotic checkpoint protein BUB3 OS=Mus musculus GN=Bub3 PE=2 SV=2
Length = 326
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
F+CH ++ + PVN + F + F TG ++G+V WD +++RL + R+ S+
Sbjct: 221 FKCHRLKENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 279
Query: 62 ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
ASL++++ G LA+ASS Y+ IFI ++ D + +
Sbjct: 280 ASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETK 322
>sp|Q1JQB2|BUB3_BOVIN Mitotic checkpoint protein BUB3 OS=Bos taurus GN=BUB3 PE=2 SV=1
Length = 326
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 1/103 (0%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
F+CH ++ + PVN + F + F TG ++G+V WD +++RL + R+ S+
Sbjct: 221 FKCHRLKENNIEQIYPVNAISFHNI-HNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSI 279
Query: 62 ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDDIQQQ 104
ASL++++ G LA+ASS Y+ IFI ++ D + +
Sbjct: 280 ASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAETK 322
>sp|O42860|BUB3_SCHPO Mitotic checkpoint protein bub3 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=bub3 PE=1 SV=1
Length = 320
Score = 55.8 bits (133), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 48/83 (57%), Gaps = 2/83 (2%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
F+CH + + + PVND+ F P+ + T +G VA WD Q R+RL L ++
Sbjct: 220 FKCHRQIQKDYDIVYPVNDLKFHPIHQ-TLATAGGDGVVAFWDIQVRKRLRVLNPSKINI 278
Query: 62 ASLSYNHGGQLLAVASSCTYQEA 84
+S+S+N G +LA+A +C +EA
Sbjct: 279 SSISFNVDGSMLAIA-TCAQEEA 300
>sp|P40066|GLE2_YEAST Nucleoporin GLE2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=GLE2 PE=1 SV=1
Length = 365
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 8/104 (7%)
Query: 2 FRCHPKSK-------DGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL 54
F+CH ++ +G+ + PVN + F PL G FVT +G WD R RL
Sbjct: 249 FKCHRQTNPNRAPGSNGQSLVYPVNSIAFHPL-YGTFVTAGGDGTFNFWDKNQRHRLKGY 307
Query: 55 PRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRI 98
P S+ S+N G + A A S + + + P +IR+
Sbjct: 308 PTLQASIPVCSFNRNGSVFAYALSYDWHQGHMGNRPDYPNVIRL 351
>sp|Q38942|RAE1L_ARATH Rae1-like protein At1g80670 OS=Arabidopsis thaliana GN=At1g80670
PE=2 SV=2
Length = 349
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
F+CH +DG + + VN + F P+ G F T ++G WD S++RL + R + +
Sbjct: 237 FKCH---RDG-NDIYSVNSLNFHPV-HGTFATAGSDGAFNFWDKDSKQRLKAMSRCNQPI 291
Query: 62 ASLSYNHGGQLLAVASSCTYQEATVIEEP 90
S+NH G + A A+ + + P
Sbjct: 292 PCSSFNHDGSIYAYAACYDWSKGAENHNP 320
>sp|P41838|RAE1_SCHPO Poly(A)+ RNA export protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rae1 PE=1 SV=1
Length = 352
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
FRCH + VN + F P G F T ++G + WD S +RL P ++
Sbjct: 241 FRCHRNQAGNSADVYSVNSIAFHP-QYGTFSTAGSDGTFSFWDKDSHQRLKSYPNVGGTI 299
Query: 62 ASLSYNHGGQLLAVASSCTYQEA 84
+ ++N G + A A S + +
Sbjct: 300 SCSTFNRTGDIFAYAISYDWSKG 322
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 12/91 (13%)
Query: 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77
++D+ FSP + Y+AA S+ R++E+ S+ Y H G +L+V
Sbjct: 33 ISDLAFSPQAE----------YLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVLSVNW 82
Query: 78 S--CTYQEATVIEEPPQIFIIRIDDIQQQSA 106
S T + +++ ++F I+ QQ +A
Sbjct: 83 SRDGTKVASGSVDKSAKVFDIQTGQNQQVAA 113
>sp|B3M1G0|WDR55_DROAN WD repeat-containing protein 55 homolog OS=Drosophila ananassae
GN=GF18399 PE=3 SV=1
Length = 481
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 26 LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEAT 85
L+ F TGD+ G V WD ++++ +FEL + + V L N LL S+ Y T
Sbjct: 242 LNENLFATGDDAGTVKLWDLRTKQHVFELKQIDDQVTQLLSNEQNTLLLATSADGY--LT 299
Query: 86 VIEEPPQIFIIRIDDIQQQSACVG 109
P + ++ + +++ C+G
Sbjct: 300 TFNIPGRKLYVQSEPYEEELNCMG 323
>sp|Q3SWS8|RAE1L_RAT mRNA export factor OS=Rattus norvegicus GN=Rae1 PE=2 SV=1
Length = 368
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2 FRCHPKS---KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS 58
F+CH + + VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315
Query: 59 NSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
VA+ +NH G + A ASS + + P
Sbjct: 316 QPVAACGFNHNGNIFAYASSYDWSKGHEFYNP 347
>sp|P26449|BUB3_YEAST Cell cycle arrest protein BUB3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUB3 PE=1 SV=1
Length = 341
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 2 FRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NS 60
FRCH + + PVN + FSP + + G ++G ++ W+ Q+R+++ +F+ +S
Sbjct: 238 FRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAG-SDGIISCWNLQTRKKIKNFAKFNEDS 296
Query: 61 VASLSYNHGGQLLAVASSCTYQEATVIEEPPQI 93
V ++ + LA + T++ I++ ++
Sbjct: 297 VVKIACSDNILCLATSDD-TFKTNAAIDQTIEL 328
>sp|B4PU14|WDR55_DROYA WD repeat-containing protein 55 homolog OS=Drosophila yakuba
GN=GE24201 PE=3 SV=1
Length = 499
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 26 LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEAT 85
L+ F TGD+ G V WD +++ +FEL + + L+ N +LL S+ Y T
Sbjct: 252 LNENLFATGDDAGTVKLWDLRTKNAIFELKELEDQITQLTTNDQNKLLLATSADGY--LT 309
Query: 86 VIEEPPQIFIIRIDDIQQQSACVG 109
+ ++ + +++ +C+G
Sbjct: 310 TFNIAARKMYVQSEPYEEELSCMG 333
>sp|Q8C570|RAE1L_MOUSE mRNA export factor OS=Mus musculus GN=Rae1 PE=1 SV=1
Length = 368
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2 FRCHPKS---KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS 58
F+CH + + VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315
Query: 59 NSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
+A+ +NH G + A ASS + + P
Sbjct: 316 QPIAACCFNHNGNIFAYASSYDWSKGHEFYNP 347
>sp|B3P4F8|WDR55_DROER WD repeat-containing protein 55 homolog OS=Drosophila erecta
GN=GG18443 PE=3 SV=1
Length = 498
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 26 LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEAT 85
L+ F TGD+ G V WD +++ +FEL + + L+ N +LL S+ Y T
Sbjct: 253 LNENLFATGDDAGTVKLWDLRTKNAIFELKELEDQITQLTTNDQSKLLLATSADGY--LT 310
Query: 86 VIEEPPQIFIIRIDDIQQQSACVG 109
+ ++ + +++ +C+G
Sbjct: 311 TFNIAARKMYVQSEPYEEELSCMG 334
>sp|Q5FVA9|RAE1L_XENTR mRNA export factor OS=Xenopus tropicalis GN=rae1 PE=2 SV=1
Length = 368
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 2 FRCHPKSKDGRHHLVP-----VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR 56
F+CH +G + P VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCH--RSNGTNTTAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQ 313
Query: 57 FSNSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
+++ S+NH G + A +SS + + P
Sbjct: 314 LDQPISACSFNHNGNIFAYSSSYDWSKGHEFYNP 347
>sp|A5GFN6|RAEL1_PIG mRNA export factor OS=Sus scrofa GN=RAE1 PE=3 SV=1
Length = 368
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2 FRCHPKS---KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS 58
F+CH + + VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315
Query: 59 NSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
+++ +NH G + A ASS + + P
Sbjct: 316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347
>sp|Q5E9A4|RAE1L_BOVIN mRNA export factor OS=Bos taurus GN=RAE1 PE=2 SV=1
Length = 368
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2 FRCHPKS---KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS 58
F+CH + + VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315
Query: 59 NSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
+++ +NH G + A ASS + + P
Sbjct: 316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347
>sp|Q4R6D2|RAE1L_MACFA mRNA export factor OS=Macaca fascicularis GN=RAE1 PE=2 SV=1
Length = 368
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2 FRCHPKS---KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS 58
F+CH + + VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315
Query: 59 NSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
+++ +NH G + A ASS + + P
Sbjct: 316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347
>sp|Q5RF99|RAEL1_PONAB mRNA export factor OS=Pongo abelii GN=RAE1 PE=2 SV=1
Length = 368
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2 FRCHPKS---KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS 58
F+CH + + VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315
Query: 59 NSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
+++ +NH G + A ASS + + P
Sbjct: 316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347
>sp|P78406|RAE1L_HUMAN mRNA export factor OS=Homo sapiens GN=RAE1 PE=1 SV=1
Length = 368
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 22/92 (23%), Positives = 40/92 (43%), Gaps = 4/92 (4%)
Query: 2 FRCHPKS---KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS 58
F+CH + + VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCHRSNGTNTSAPQDIYAVNGIAFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQLD 315
Query: 59 NSVASLSYNHGGQLLAVASSCTYQEATVIEEP 90
+++ +NH G + A ASS + + P
Sbjct: 316 QPISACCFNHNGNIFAYASSYDWSKGHEFYNP 347
>sp|Q8T088|WDR55_DROME WD repeat-containing protein 55 homolog OS=Drosophila melanogaster
GN=CG14722 PE=2 SV=1
Length = 498
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 26 LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY 81
L+ F +GD+ G V WD +++ +FEL + + L+ N +LL S+ Y
Sbjct: 252 LNENLFASGDDAGTVKLWDLRTKNAIFELKELEDQITQLTTNEQSKLLLATSADGY 307
>sp|B4QTL6|WDR55_DROSI WD repeat-containing protein 55 homolog OS=Drosophila simulans
GN=GD18783 PE=3 SV=1
Length = 498
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 26 LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY 81
L+ F +GD+ G V WD +++ +FEL + + L+ N +LL S+ Y
Sbjct: 252 LNENLFASGDDAGTVKLWDLRTKNAIFELKELEDQITQLTTNEQSKLLLATSADGY 307
>sp|Q7ZWF0|RAE1L_DANRE mRNA export factor OS=Danio rerio GN=rae1 PE=2 SV=2
Length = 368
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 2 FRCHPKSKDGRHHLVP-----VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR 56
F+CH +G + P VN + F P+ G T ++G + WD +R +L +
Sbjct: 257 FKCH--RSNGTNTATPQDIYAVNAISFHPV-HGTLATVGSDGRFSFWDKDARTKLKTSEQ 313
Query: 57 FSNSVASLSYNHGGQLLAVASS 78
+ + +NH G + A ASS
Sbjct: 314 LDQPITACCFNHNGNIFAYASS 335
>sp|Q6NZH4|LIS1_XENTR Lissencephaly-1 homolog OS=Xenopus tropicalis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ VT + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|Q90ZL4|LIS1_XENLA Lissencephaly-1 homolog OS=Xenopus laevis GN=pafah1b1 PE=2 SV=3
Length = 410
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ VT + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVTASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|Q15542|TAF5_HUMAN Transcription initiation factor TFIID subunit 5 OS=Homo sapiens
GN=TAF5 PE=1 SV=3
Length = 800
Score = 36.6 bits (83), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H P++ + FSP R TG +G V WD + EL +++V SL ++ G++L
Sbjct: 668 HKGPIHSLTFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEIL 726
Query: 74 AVAS 77
A S
Sbjct: 727 ASGS 730
>sp|Q294Y7|WDR55_DROPS WD repeat-containing protein 55 homolog OS=Drosophila pseudoobscura
pseudoobscura GN=GA13204 PE=3 SV=2
Length = 503
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 26 LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY 81
L F TGD+ G V WD +++ +FEL + + + N +LL S+ Y
Sbjct: 255 LDENLFATGDDAGTVKLWDLRTKNPIFELKEVEDQITQMITNDQKKLLLATSADGY 310
>sp|B4GMG4|WDR55_DROPE WD repeat-containing protein 55 homolog OS=Drosophila persimilis
GN=GL12389 PE=3 SV=1
Length = 503
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 26 LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY 81
L F TGD+ G V WD +++ +FEL + + + N +LL S+ Y
Sbjct: 255 LDENLFATGDDAGTVKLWDLRTKNPIFELKEVEDQITQMITNDQKKLLLATSADGY 310
>sp|Q8C092|TAF5_MOUSE Transcription initiation factor TFIID subunit 5 OS=Mus musculus
GN=Taf5 PE=2 SV=1
Length = 801
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H P++ + FSP R TG +G V WD + EL +++V SL ++ G++L
Sbjct: 669 HKGPIHSLTFSPNGR-FLATGATDGRVLLWDIGHGLMVGELKGHTDTVCSLRFSRDGEIL 727
Query: 74 AVAS 77
A S
Sbjct: 728 ASGS 731
>sp|B4KE10|WDR55_DROMO WD repeat-containing protein 55 homolog OS=Drosophila mojavensis
GN=GI10299 PE=3 SV=2
Length = 506
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 31 FVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY 81
F TGD+ G V WD +++ +FEL + + + N +LL S+ Y
Sbjct: 259 FATGDDAGTVKLWDFRTKDAIFELKEVEDQITQMLTNEQNKLLLATSADGY 309
>sp|B4M4W4|WDR55_DROVI WD repeat-containing protein 55 homolog OS=Drosophila virilis
GN=GJ10153 PE=3 SV=1
Length = 504
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 31 FVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY 81
F TGD+ G V WD +++ +FEL + + + N +LL S+ Y
Sbjct: 259 FATGDDAGTVKLWDFRTKDAIFELKEVEDQITQMLTNEQNKLLLATSADGY 309
>sp|B4JSW8|WDR55_DROGR WD repeat-containing protein 55 homolog OS=Drosophila grimshawi
GN=GH23127 PE=3 SV=1
Length = 503
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 31 FVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY 81
F TGD+ G V WD +++ +FEL + + + N +LL S+ Y
Sbjct: 257 FATGDDAGTVKLWDFRTKDAIFELKEVEDQITQMLTNEQNKLLLATSADGY 307
>sp|Q5IS43|LIS1_PANTR Platelet-activating factor acetylhydrolase IB subunit alpha OS=Pan
troglodytes GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|P43034|LIS1_HUMAN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Homo
sapiens GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 36.2 bits (82), Expect = 0.059, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|P63004|LIS1_RAT Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Rattus norvegicus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|P63005|LIS1_MOUSE Platelet-activating factor acetylhydrolase IB subunit alpha OS=Mus
musculus GN=Pafah1b1 PE=1 SV=2
Length = 410
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|B0LSW3|LIS1_FELCA Platelet-activating factor acetylhydrolase IB subunit alpha
OS=Felis catus GN=PAFAH1B1 PE=2 SV=1
Length = 410
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|Q9GL51|LIS1_PIG Platelet-activating factor acetylhydrolase IB subunit alpha OS=Sus
scrofa GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|P43033|LIS1_BOVIN Platelet-activating factor acetylhydrolase IB subunit alpha OS=Bos
taurus GN=PAFAH1B1 PE=1 SV=2
Length = 410
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVEDISFDHSGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|B5X3Z6|LIS1A_SALSA Lissencephaly-1 homolog A OS=Salmo salar GN=pafah1b1-1 PE=2 SV=1
Length = 410
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|Q9CX97|WDR55_MOUSE WD repeat-containing protein 55 OS=Mus musculus GN=Wdr55 PE=2 SV=2
Length = 388
Score = 35.8 bits (81), Expect = 0.078, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Query: 12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ 71
+ H P+N V+ + A VTGD+ G + WD + L ++ + +A ++ + +
Sbjct: 125 KAHSAPINSVLL--VDENALVTGDDTGGIRLWDQRKEGPLMDMRQHEEYIADMALDPAKK 182
Query: 72 LLAVAS 77
LL AS
Sbjct: 183 LLLTAS 188
>sp|Q9PTR5|LIS1_CHICK Lissencephaly-1 homolog OS=Gallus gallus GN=PAFAH1B1 PE=2 SV=3
Length = 410
Score = 35.8 bits (81), Expect = 0.078, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHTGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|A5DR04|ASA1_PICGU ASTRA-associated protein 1 OS=Meyerozyma guilliermondii (strain
ATCC 6260 / CBS 566 / DSM 6381 / JCM 1539 / NBRC 10279
/ NRRL Y-324) GN=ASA1 PE=3 SV=2
Length = 449
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 4/63 (6%)
Query: 6 PKSKDG-RHHLVPVN-DVVFSPLSRG--AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61
P+ K R H P+ +VF R VT DNEG+VA WD ++R L SNS+
Sbjct: 3 PRQKGALRGHKNPITCTIVFKDHKRNCNTLVTSDNEGWVAWWDISTKRPLGVWRAHSNSI 62
Query: 62 ASL 64
S+
Sbjct: 63 LSV 65
>sp|Q7T394|LIS1A_DANRE Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3
Length = 410
Score = 35.8 bits (81), Expect = 0.082, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV V+F P+ V+ + + WD ++ L ++SV +S++H G+LL
Sbjct: 107 HRSPVTRVIFHPVF-SVIVSASEDATIKVWDHETGDFERTLKGHTDSVQDISFDHTGKLL 165
Query: 74 AVASS 78
A S+
Sbjct: 166 ASCSA 170
>sp|B4N984|WDR55_DROWI WD repeat-containing protein 55 homolog OS=Drosophila willistoni
GN=GK12179 PE=3 SV=1
Length = 504
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 31 FVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY 81
F +GD+ G V WD +++ +FEL + V + N +LL S+ Y
Sbjct: 261 FASGDDSGTVKLWDFRTKDSIFELKEIEDQVTQMITNDQKKLLLATSADGY 311
>sp|Q0IF90|WDR55_AEDAE WD repeat-containing protein 55 homolog OS=Aedes aegypti
GN=AAEL006422 PE=3 SV=1
Length = 468
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 4/100 (4%)
Query: 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73
H PV S ++ F TGD+ G + WD + + +F+L + ++ + N + L
Sbjct: 222 HEEPV--YTMSMITEHTFATGDDGGVLKLWDLRQKDPVFKLKEVEDFISCIITNEQKKYL 279
Query: 74 AVASSCTYQEATVIEEPPQIFIIRIDDIQQQSACVGSSSR 113
+ S Y T I P + ++ + +++ C+G R
Sbjct: 280 LMTSGDGY--LTTINIPQRKMYVQSEPYEEELTCMGVFRR 317
>sp|Q29RH4|THOC3_BOVIN THO complex subunit 3 OS=Bos taurus GN=THOC3 PE=2 SV=1
Length = 351
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 21 VVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80
+ F P+ + F TG + V+ WD + R V +LS++H G++LA AS
Sbjct: 230 IKFDPMGK-YFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDH 288
Query: 81 YQEATVIEEPPQIFIIRID 99
+ + +E +++ ++ +
Sbjct: 289 FIDIAEVETGDKLWEVQCE 307
>sp|Q8VE80|THOC3_MOUSE THO complex subunit 3 OS=Mus musculus GN=Thoc3 PE=2 SV=1
Length = 351
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 21 VVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80
+ F P+ + F TG + V+ WD + R V +LS++H G++LA AS
Sbjct: 230 IKFDPMGK-YFATGSADALVSLWDVDELVCVRCFSRLDWPVRTLSFSHDGKMLASASEDH 288
Query: 81 YQEATVIEEPPQIFIIRID 99
+ + +E +++ ++ +
Sbjct: 289 FIDIAEVETGDKLWEVQCE 307
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,136,445
Number of Sequences: 539616
Number of extensions: 1515531
Number of successful extensions: 3682
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 102
Number of HSP's that attempted gapping in prelim test: 3471
Number of HSP's gapped (non-prelim): 329
length of query: 114
length of database: 191,569,459
effective HSP length: 82
effective length of query: 32
effective length of database: 147,320,947
effective search space: 4714270304
effective search space used: 4714270304
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)