Query 033677
Match_columns 114
No_of_seqs 138 out of 1274
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 05:01:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033677.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033677hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0647 mRNA export protein (c 99.9 3E-22 6.4E-27 146.6 9.1 99 1-100 237-338 (347)
2 KOG1036 Mitotic spindle checkp 99.8 2.5E-20 5.3E-25 136.5 9.0 100 1-101 218-318 (323)
3 KOG0263 Transcription initiati 99.4 5.9E-13 1.3E-17 106.7 8.4 86 14-100 534-629 (707)
4 KOG0271 Notchless-like WD40 re 99.4 2.2E-12 4.8E-17 97.7 8.1 73 13-86 113-191 (480)
5 KOG0266 WD40 repeat-containing 99.4 3.2E-12 6.9E-17 99.7 9.2 70 14-84 245-318 (456)
6 KOG0272 U4/U6 small nuclear ri 99.4 1.2E-12 2.6E-17 99.7 6.2 68 14-82 302-373 (459)
7 KOG1407 WD40 repeat protein [F 99.3 1.3E-11 2.8E-16 89.7 7.2 69 13-82 187-255 (313)
8 KOG0264 Nucleosome remodeling 99.3 3E-11 6.5E-16 92.2 9.3 88 12-99 269-372 (422)
9 KOG0272 U4/U6 small nuclear ri 99.3 1.4E-11 3E-16 93.9 7.4 65 14-79 344-409 (459)
10 PTZ00421 coronin; Provisional 99.2 2.1E-10 4.5E-15 90.5 12.1 65 14-79 124-189 (493)
11 KOG0263 Transcription initiati 99.2 3.5E-11 7.7E-16 96.7 7.7 71 13-84 449-523 (707)
12 KOG0266 WD40 repeat-containing 99.2 2.1E-10 4.5E-15 89.5 11.3 71 13-84 201-276 (456)
13 KOG0286 G-protein beta subunit 99.2 9E-11 2E-15 86.4 7.5 66 14-79 185-250 (343)
14 KOG0289 mRNA splicing factor [ 99.2 8.4E-11 1.8E-15 90.1 7.2 64 18-82 350-417 (506)
15 KOG0279 G protein beta subunit 99.1 1.3E-10 2.8E-15 85.0 7.0 67 15-82 148-220 (315)
16 KOG0291 WD40-repeat-containing 99.1 6.1E-10 1.3E-14 90.0 10.7 97 13-110 348-454 (893)
17 KOG0284 Polyadenylation factor 99.1 1.2E-10 2.6E-15 88.7 5.2 66 13-79 220-285 (464)
18 KOG0318 WD40 repeat stress pro 99.1 8.1E-10 1.7E-14 86.4 9.9 69 13-82 188-263 (603)
19 KOG0279 G protein beta subunit 99.1 3.7E-10 8E-15 82.7 7.1 68 14-82 62-133 (315)
20 KOG0271 Notchless-like WD40 re 99.1 2.8E-10 6.1E-15 86.4 6.6 65 14-79 408-472 (480)
21 KOG0278 Serine/threonine kinas 99.1 3.1E-10 6.8E-15 82.4 6.5 74 10-84 219-297 (334)
22 PTZ00421 coronin; Provisional 99.1 2.4E-09 5.1E-14 84.6 11.9 70 14-83 74-155 (493)
23 KOG0286 G-protein beta subunit 99.1 7.8E-10 1.7E-14 81.5 7.6 67 15-82 229-301 (343)
24 KOG0273 Beta-transducin family 99.0 8.6E-10 1.9E-14 85.3 7.6 88 13-100 399-503 (524)
25 KOG0283 WD40 repeat-containing 99.0 1E-09 2.2E-14 88.8 8.4 67 13-80 407-473 (712)
26 KOG0302 Ribosome Assembly prot 99.0 1.5E-09 3.3E-14 82.2 8.2 85 13-98 300-407 (440)
27 KOG2394 WD40 protein DMR-N9 [G 99.0 5.5E-10 1.2E-14 87.6 5.7 64 16-80 291-354 (636)
28 KOG0772 Uncharacterized conser 99.0 1E-09 2.2E-14 85.9 7.1 95 14-109 267-371 (641)
29 PTZ00420 coronin; Provisional 99.0 7.8E-09 1.7E-13 82.8 12.0 64 14-79 124-188 (568)
30 KOG0645 WD40 repeat protein [G 99.0 5E-09 1.1E-13 76.6 9.9 66 13-79 59-126 (312)
31 KOG1273 WD40 repeat protein [G 99.0 7.4E-10 1.6E-14 82.5 5.6 64 18-82 26-93 (405)
32 KOG0306 WD40-repeat-containing 99.0 1.1E-09 2.5E-14 88.4 6.7 79 4-86 584-666 (888)
33 cd00200 WD40 WD40 domain, foun 99.0 1.1E-08 2.3E-13 71.0 10.7 65 14-79 8-72 (289)
34 KOG0275 Conserved WD40 repeat- 99.0 2.5E-10 5.5E-15 85.5 2.1 64 15-79 263-327 (508)
35 KOG0264 Nucleosome remodeling 98.9 2.6E-09 5.5E-14 81.8 6.7 73 13-85 225-304 (422)
36 KOG0319 WD40-repeat-containing 98.9 3.9E-09 8.4E-14 85.0 7.6 69 13-82 461-533 (775)
37 KOG0296 Angio-associated migra 98.9 1.1E-08 2.4E-13 77.2 9.5 66 13-79 62-127 (399)
38 KOG0316 Conserved WD40 repeat- 98.9 3E-09 6.5E-14 76.8 6.1 68 14-82 58-129 (307)
39 PTZ00420 coronin; Provisional 98.9 1.1E-08 2.5E-13 81.9 9.9 70 14-83 73-155 (568)
40 KOG1539 WD repeat protein [Gen 98.9 1.1E-08 2.4E-13 83.5 9.3 64 14-79 575-638 (910)
41 KOG0284 Polyadenylation factor 98.9 2E-09 4.4E-14 82.1 4.8 69 13-82 178-250 (464)
42 KOG0640 mRNA cleavage stimulat 98.9 4.4E-09 9.5E-14 78.5 6.4 83 1-84 247-335 (430)
43 KOG0273 Beta-transducin family 98.9 1.3E-08 2.8E-13 78.8 9.2 100 10-111 230-359 (524)
44 KOG0318 WD40 repeat stress pro 98.9 1.2E-08 2.6E-13 80.0 8.9 66 13-79 485-551 (603)
45 KOG0293 WD40 repeat-containing 98.9 3E-09 6.5E-14 81.5 5.4 68 14-82 268-340 (519)
46 KOG1445 Tumor-specific antigen 98.9 1.6E-09 3.6E-14 86.7 4.1 68 13-80 675-742 (1012)
47 PF08662 eIF2A: Eukaryotic tra 98.9 2.2E-08 4.7E-13 70.2 9.2 61 16-79 101-164 (194)
48 KOG1034 Transcriptional repres 98.9 6.3E-09 1.4E-13 77.8 6.7 67 13-79 133-202 (385)
49 KOG0302 Ribosome Assembly prot 98.9 9.4E-09 2E-13 77.9 7.5 84 14-98 256-347 (440)
50 KOG0269 WD40 repeat-containing 98.9 5.3E-09 1.1E-13 84.7 6.5 70 16-85 177-251 (839)
51 KOG0285 Pleiotropic regulator 98.9 8.3E-09 1.8E-13 78.0 6.9 66 14-80 276-341 (460)
52 KOG0645 WD40 repeat protein [G 98.9 1.5E-08 3.1E-13 74.2 8.0 64 15-79 14-82 (312)
53 KOG0319 WD40-repeat-containing 98.8 9.5E-09 2.1E-13 82.8 7.3 67 15-82 505-575 (775)
54 KOG0295 WD40 repeat-containing 98.8 2.1E-08 4.5E-13 75.7 8.5 72 13-84 275-364 (406)
55 KOG0285 Pleiotropic regulator 98.8 1.2E-08 2.7E-13 77.1 7.3 70 13-83 233-306 (460)
56 cd00200 WD40 WD40 domain, foun 98.8 4.4E-08 9.6E-13 67.8 9.4 65 14-79 218-282 (289)
57 KOG0291 WD40-repeat-containing 98.8 2E-08 4.3E-13 81.5 8.5 65 14-79 477-541 (893)
58 KOG0288 WD40 repeat protein Ti 98.8 1.6E-08 3.5E-13 77.3 7.6 64 15-79 387-452 (459)
59 KOG0315 G-protein beta subunit 98.8 3.3E-08 7.1E-13 71.9 8.6 65 14-79 214-279 (311)
60 KOG1446 Histone H3 (Lys4) meth 98.8 4.1E-08 8.8E-13 72.7 9.3 62 15-79 100-161 (311)
61 KOG0647 mRNA export protein (c 98.8 1.3E-08 2.8E-13 75.4 6.6 70 16-85 28-103 (347)
62 KOG0973 Histone transcription 98.8 1E-08 2.2E-13 85.0 6.7 63 16-79 130-192 (942)
63 KOG2110 Uncharacterized conser 98.8 6.3E-08 1.4E-12 73.2 10.0 65 14-79 172-239 (391)
64 KOG0283 WD40 repeat-containing 98.8 1.1E-08 2.4E-13 82.9 6.0 63 14-79 368-431 (712)
65 KOG0315 G-protein beta subunit 98.8 3.5E-08 7.5E-13 71.7 7.7 68 15-84 83-154 (311)
66 KOG0265 U5 snRNP-specific prot 98.8 5.7E-08 1.2E-12 71.9 8.6 69 13-82 45-118 (338)
67 PLN00181 protein SPA1-RELATED; 98.8 6.6E-08 1.4E-12 79.8 9.7 68 16-83 533-605 (793)
68 KOG2106 Uncharacterized conser 98.8 1E-07 2.2E-12 74.7 10.0 81 15-109 407-491 (626)
69 KOG0293 WD40 repeat-containing 98.7 3.8E-08 8.2E-13 75.6 7.5 76 3-79 206-290 (519)
70 KOG0289 mRNA splicing factor [ 98.7 8.2E-08 1.8E-12 74.0 9.1 65 14-79 388-453 (506)
71 KOG0267 Microtubule severing p 98.7 6E-09 1.3E-13 84.0 3.0 66 13-79 68-133 (825)
72 KOG0277 Peroxisomal targeting 98.7 5.3E-08 1.2E-12 70.9 7.6 67 14-80 146-213 (311)
73 KOG2111 Uncharacterized conser 98.7 2.2E-07 4.8E-12 69.2 10.8 65 13-78 179-246 (346)
74 PLN00181 protein SPA1-RELATED; 98.7 2.5E-07 5.3E-12 76.5 12.3 65 14-79 574-639 (793)
75 KOG0282 mRNA splicing factor [ 98.7 5.6E-09 1.2E-13 80.9 2.0 69 14-82 213-286 (503)
76 KOG0973 Histone transcription 98.7 1.1E-07 2.3E-12 79.1 9.3 66 13-79 67-150 (942)
77 KOG0305 Anaphase promoting com 98.7 1E-07 2.2E-12 75.0 8.6 66 13-79 299-365 (484)
78 KOG0322 G-protein beta subunit 98.7 2E-08 4.3E-13 73.4 4.3 62 17-79 253-314 (323)
79 KOG0295 WD40 repeat-containing 98.7 1E-07 2.2E-12 72.1 7.7 65 14-79 333-397 (406)
80 KOG1407 WD40 repeat protein [F 98.7 3E-07 6.4E-12 67.2 9.7 67 13-80 62-128 (313)
81 KOG0772 Uncharacterized conser 98.7 3E-08 6.6E-13 77.8 4.8 67 15-82 317-392 (641)
82 KOG0277 Peroxisomal targeting 98.7 1.3E-07 2.7E-12 69.0 7.5 84 14-98 103-191 (311)
83 KOG0650 WD40 repeat nucleolar 98.6 1.8E-07 3.9E-12 74.5 8.5 63 15-79 400-464 (733)
84 KOG0292 Vesicle coat complex C 98.6 1.3E-07 2.9E-12 78.1 8.0 66 13-79 49-114 (1202)
85 KOG0294 WD40 repeat-containing 98.6 1.8E-07 4E-12 69.7 7.8 71 13-84 81-157 (362)
86 KOG0282 mRNA splicing factor [ 98.6 3.8E-08 8.3E-13 76.3 4.2 63 16-79 300-363 (503)
87 PF00400 WD40: WD domain, G-be 98.6 1E-07 2.2E-12 49.6 4.4 30 14-44 10-39 (39)
88 KOG0276 Vesicle coat complex C 98.6 1.5E-07 3.3E-12 75.3 7.2 65 15-79 140-206 (794)
89 KOG1538 Uncharacterized conser 98.6 1.8E-07 3.8E-12 75.7 7.4 86 16-103 13-106 (1081)
90 KOG0296 Angio-associated migra 98.6 2.4E-07 5.2E-12 70.0 7.6 65 14-80 326-390 (399)
91 KOG0643 Translation initiation 98.6 3.4E-07 7.4E-12 67.1 8.0 64 14-79 51-114 (327)
92 KOG0316 Conserved WD40 repeat- 98.6 1.5E-07 3.3E-12 68.1 6.1 66 16-82 18-87 (307)
93 KOG0292 Vesicle coat complex C 98.6 5.9E-08 1.3E-12 80.1 4.2 66 16-82 10-79 (1202)
94 KOG1539 WD repeat protein [Gen 98.6 2.1E-07 4.5E-12 76.2 7.2 74 8-82 486-604 (910)
95 KOG0308 Conserved WD40 repeat- 98.6 2.3E-07 5E-12 74.3 7.3 71 15-86 171-245 (735)
96 KOG1063 RNA polymerase II elon 98.5 2.3E-07 5.1E-12 74.7 6.8 66 13-79 523-593 (764)
97 KOG0299 U3 snoRNP-associated p 98.5 4.1E-07 8.9E-12 70.4 7.9 96 13-110 200-305 (479)
98 KOG0267 Microtubule severing p 98.5 9.6E-08 2.1E-12 77.2 4.6 68 15-83 112-183 (825)
99 KOG0313 Microtubule binding pr 98.5 4.4E-07 9.5E-12 69.0 7.6 65 14-79 344-409 (423)
100 KOG1310 WD40 repeat protein [G 98.5 5E-07 1.1E-11 71.7 8.2 65 14-79 49-116 (758)
101 KOG0641 WD40 repeat protein [G 98.5 1.6E-06 3.4E-11 62.8 9.7 69 13-82 229-297 (350)
102 KOG1007 WD repeat protein TSSC 98.5 2.4E-07 5.2E-12 68.6 5.6 67 13-79 212-280 (370)
103 KOG0303 Actin-binding protein 98.5 2.4E-07 5.2E-12 70.8 5.6 64 15-79 131-194 (472)
104 KOG0270 WD40 repeat-containing 98.5 1.3E-07 2.9E-12 72.8 4.2 69 11-79 239-308 (463)
105 KOG1274 WD40 repeat protein [G 98.5 4.4E-07 9.5E-12 74.8 7.3 59 14-73 137-203 (933)
106 PF08662 eIF2A: Eukaryotic tra 98.5 1.3E-06 2.8E-11 61.3 8.8 60 16-79 60-121 (194)
107 KOG0771 Prolactin regulatory e 98.5 2E-07 4.4E-12 71.1 5.0 63 19-82 148-213 (398)
108 KOG0306 WD40-repeat-containing 98.5 1.2E-06 2.6E-11 71.4 9.5 68 16-84 66-137 (888)
109 KOG0640 mRNA cleavage stimulat 98.5 8.9E-07 1.9E-11 66.3 8.0 69 13-82 214-289 (430)
110 KOG0646 WD40 repeat protein [G 98.5 3.3E-07 7.2E-12 70.9 5.9 69 15-84 81-153 (476)
111 KOG0265 U5 snRNP-specific prot 98.5 1.5E-06 3.2E-11 64.5 8.9 65 14-79 89-154 (338)
112 KOG0308 Conserved WD40 repeat- 98.5 1.2E-06 2.7E-11 70.3 8.8 66 13-79 211-276 (735)
113 KOG0278 Serine/threonine kinas 98.4 1.7E-06 3.7E-11 63.2 8.6 64 14-79 142-205 (334)
114 KOG1272 WD40-repeat-containing 98.4 4E-07 8.6E-12 70.8 5.3 61 16-79 294-354 (545)
115 KOG0639 Transducin-like enhanc 98.4 2.6E-07 5.7E-12 72.6 4.2 66 18-84 512-581 (705)
116 KOG0294 WD40 repeat-containing 98.4 1.2E-06 2.5E-11 65.5 7.1 64 13-79 41-106 (362)
117 KOG2110 Uncharacterized conser 98.4 4.4E-06 9.6E-11 63.4 10.3 97 14-111 128-239 (391)
118 KOG0276 Vesicle coat complex C 98.4 3.7E-07 7.9E-12 73.2 4.7 65 14-79 182-248 (794)
119 KOG1332 Vesicle coat complex C 98.4 8.7E-07 1.9E-11 64.4 6.0 66 14-79 55-125 (299)
120 KOG1273 WD40 repeat protein [G 98.4 1.4E-06 3.1E-11 65.3 7.2 59 13-73 63-121 (405)
121 KOG0300 WD40 repeat-containing 98.4 9.6E-07 2.1E-11 66.4 6.3 64 15-79 148-211 (481)
122 KOG1524 WD40 repeat-containing 98.4 1.8E-06 3.8E-11 68.5 7.6 64 13-79 184-247 (737)
123 KOG0310 Conserved WD40 repeat- 98.4 1.9E-06 4E-11 67.1 7.5 69 15-84 153-225 (487)
124 KOG1446 Histone H3 (Lys4) meth 98.4 1.5E-06 3.2E-11 64.5 6.7 60 19-79 236-296 (311)
125 KOG2321 WD40 repeat protein [G 98.3 2.8E-06 6.1E-11 67.7 7.9 64 15-79 175-249 (703)
126 KOG2139 WD40 repeat protein [G 98.3 2.9E-06 6.3E-11 64.5 7.7 64 15-79 195-259 (445)
127 KOG4378 Nuclear protein COP1 [ 98.3 2.8E-06 6E-11 66.9 7.6 66 12-79 205-271 (673)
128 KOG0310 Conserved WD40 repeat- 98.3 9.9E-06 2.1E-10 63.1 10.6 67 13-79 108-175 (487)
129 KOG1009 Chromatin assembly com 98.3 3.3E-06 7.1E-11 64.7 7.7 66 13-79 63-144 (434)
130 KOG0281 Beta-TrCP (transducin 98.3 1.7E-06 3.6E-11 65.7 6.0 61 14-79 319-379 (499)
131 KOG4283 Transcription-coupled 98.3 1.3E-06 2.8E-11 65.1 5.3 68 14-82 187-274 (397)
132 KOG1963 WD40 repeat protein [G 98.3 3.9E-06 8.4E-11 68.9 8.4 75 14-101 250-324 (792)
133 KOG0281 Beta-TrCP (transducin 98.3 1.6E-06 3.4E-11 65.8 5.7 64 14-82 236-303 (499)
134 KOG0275 Conserved WD40 repeat- 98.3 8.3E-07 1.8E-11 66.9 4.0 69 13-82 304-376 (508)
135 KOG0641 WD40 repeat protein [G 98.3 1.5E-05 3.3E-10 57.7 10.1 68 11-79 85-161 (350)
136 KOG0269 WD40 repeat-containing 98.3 1.9E-06 4.1E-11 70.3 6.0 66 14-79 132-198 (839)
137 KOG0643 Translation initiation 98.3 8.1E-06 1.8E-10 60.1 8.6 68 14-82 9-80 (327)
138 KOG0268 Sof1-like rRNA process 98.2 1.1E-06 2.3E-11 66.8 3.8 62 17-79 231-293 (433)
139 KOG0313 Microtubule binding pr 98.2 2.7E-06 5.9E-11 64.8 5.7 67 15-82 300-374 (423)
140 KOG0268 Sof1-like rRNA process 98.2 1.8E-06 3.9E-11 65.5 4.3 66 13-79 270-336 (433)
141 KOG0274 Cdc4 and related F-box 98.2 8.2E-06 1.8E-10 65.3 8.1 67 14-84 330-400 (537)
142 KOG4328 WD40 protein [Function 98.2 1.2E-05 2.6E-10 62.5 8.2 65 16-80 323-391 (498)
143 KOG0303 Actin-binding protein 98.2 4.8E-06 1E-10 63.9 5.8 88 14-101 80-184 (472)
144 KOG0305 Anaphase promoting com 98.1 6.4E-06 1.4E-10 65.0 6.5 67 14-83 259-330 (484)
145 KOG2055 WD40 repeat protein [G 98.1 1.2E-05 2.7E-10 62.5 7.7 64 15-79 344-408 (514)
146 KOG2445 Nuclear pore complex c 98.1 5.8E-05 1.3E-09 56.5 10.7 84 16-100 14-110 (361)
147 KOG2096 WD40 repeat protein [G 98.1 2.1E-05 4.5E-10 59.2 8.4 62 14-77 85-151 (420)
148 KOG0288 WD40 repeat protein Ti 98.1 2.8E-05 6E-10 59.9 9.1 64 15-79 341-408 (459)
149 KOG0300 WD40 repeat-containing 98.1 1.3E-05 2.8E-10 60.4 7.1 68 15-84 314-386 (481)
150 KOG1274 WD40 repeat protein [G 98.1 3.1E-05 6.7E-10 64.3 9.7 64 15-79 96-159 (933)
151 KOG4283 Transcription-coupled 98.1 2.1E-05 4.5E-10 58.7 7.8 69 14-82 100-217 (397)
152 KOG1063 RNA polymerase II elon 98.1 9.2E-06 2E-10 65.8 6.2 65 14-79 571-639 (764)
153 KOG1408 WD40 repeat protein [F 98.1 1.9E-05 4.1E-10 64.6 7.9 68 11-79 637-704 (1080)
154 PF00400 WD40: WD domain, G-be 98.0 1.2E-05 2.6E-10 41.5 4.3 31 49-79 2-32 (39)
155 KOG1445 Tumor-specific antigen 98.0 1E-05 2.3E-10 65.4 5.8 63 16-79 129-191 (1012)
156 KOG0646 WD40 repeat protein [G 98.0 5.9E-05 1.3E-09 58.7 9.4 66 13-79 172-238 (476)
157 KOG1523 Actin-related protein 98.0 7.7E-05 1.7E-09 56.0 9.4 98 15-113 10-122 (361)
158 KOG2106 Uncharacterized conser 98.0 4.9E-05 1.1E-09 60.0 8.3 64 15-79 447-512 (626)
159 KOG1408 WD40 repeat protein [F 98.0 2.1E-05 4.5E-10 64.4 6.2 62 15-77 78-141 (1080)
160 KOG2394 WD40 protein DMR-N9 [G 98.0 2.6E-05 5.6E-10 61.9 6.6 52 16-68 333-384 (636)
161 PF11768 DUF3312: Protein of u 98.0 3.3E-05 7.1E-10 61.5 7.1 66 11-79 255-320 (545)
162 KOG0307 Vesicle coat complex C 97.9 9.9E-06 2.1E-10 68.2 4.3 70 13-82 114-190 (1049)
163 TIGR03866 PQQ_ABC_repeats PQQ- 97.9 0.00019 4.1E-09 51.2 10.1 59 18-78 33-92 (300)
164 KOG1332 Vesicle coat complex C 97.9 2.4E-05 5.3E-10 57.0 5.3 73 13-86 9-90 (299)
165 KOG0301 Phospholipase A2-activ 97.9 4.3E-05 9.4E-10 61.9 7.2 80 13-97 138-226 (745)
166 KOG1009 Chromatin assembly com 97.9 8.4E-06 1.8E-10 62.5 3.0 66 14-80 122-187 (434)
167 KOG0290 Conserved WD40 repeat- 97.9 9.6E-05 2.1E-09 55.1 8.2 72 8-79 143-218 (364)
168 TIGR03866 PQQ_ABC_repeats PQQ- 97.9 0.00021 4.6E-09 50.9 10.0 58 19-78 210-268 (300)
169 KOG1036 Mitotic spindle checkp 97.9 0.00015 3.3E-09 54.0 9.2 86 13-101 52-146 (323)
170 KOG2055 WD40 repeat protein [G 97.9 9.7E-05 2.1E-09 57.7 8.5 66 12-78 210-278 (514)
171 KOG1538 Uncharacterized conser 97.9 1.2E-05 2.7E-10 65.4 3.7 60 17-79 55-114 (1081)
172 KOG0642 Cell-cycle nuclear pro 97.9 4.8E-05 1E-09 60.4 6.9 73 13-86 342-428 (577)
173 COG2319 FOG: WD40 repeat [Gene 97.9 0.00015 3.2E-09 52.1 9.0 65 14-79 154-220 (466)
174 KOG2048 WD40 repeat protein [G 97.9 0.00016 3.4E-09 58.5 9.8 63 15-79 69-131 (691)
175 KOG0301 Phospholipase A2-activ 97.9 6.1E-05 1.3E-09 61.1 7.4 68 14-84 178-249 (745)
176 KOG0299 U3 snoRNP-associated p 97.9 0.00014 3E-09 56.7 8.9 65 13-79 378-446 (479)
177 PRK01742 tolB translocation pr 97.8 0.00017 3.6E-09 55.9 9.1 62 15-78 203-267 (429)
178 KOG0639 Transducin-like enhanc 97.8 1.1E-05 2.4E-10 63.7 2.5 63 15-79 551-613 (705)
179 KOG0274 Cdc4 and related F-box 97.8 0.0001 2.2E-09 59.1 7.9 68 14-84 248-319 (537)
180 KOG0771 Prolactin regulatory e 97.8 7.6E-05 1.6E-09 57.3 6.7 62 17-79 283-345 (398)
181 smart00320 WD40 WD40 repeats. 97.8 5.5E-05 1.2E-09 36.6 4.1 29 15-44 12-40 (40)
182 KOG1188 WD40 repeat protein [G 97.8 0.00014 3.1E-09 54.9 7.5 57 14-70 164-223 (376)
183 PRK05137 tolB translocation pr 97.8 0.00045 9.7E-09 53.6 10.4 61 15-77 201-264 (435)
184 PF02239 Cytochrom_D1: Cytochr 97.8 0.00028 6.1E-09 54.1 9.2 59 19-79 40-98 (369)
185 KOG0321 WD40 repeat-containing 97.7 4.9E-05 1.1E-09 61.3 4.8 69 13-82 98-173 (720)
186 KOG0642 Cell-cycle nuclear pro 97.7 6.1E-05 1.3E-09 59.8 5.3 67 13-80 292-366 (577)
187 KOG2315 Predicted translation 97.7 0.00013 2.7E-09 58.0 6.9 61 16-79 312-375 (566)
188 KOG2445 Nuclear pore complex c 97.7 0.00015 3.3E-09 54.3 7.0 66 13-79 221-309 (361)
189 KOG1272 WD40-repeat-containing 97.7 3.2E-05 6.8E-10 60.5 3.4 66 16-82 252-321 (545)
190 KOG4640 Anaphase-promoting com 97.7 0.00027 5.8E-09 57.1 8.7 62 16-79 21-83 (665)
191 KOG1240 Protein kinase contain 97.7 0.00029 6.3E-09 60.5 9.3 66 15-80 1048-1120(1431)
192 KOG1963 WD40 repeat protein [G 97.7 0.00012 2.6E-09 60.4 6.7 73 12-85 202-282 (792)
193 KOG1523 Actin-related protein 97.7 0.00011 2.5E-09 55.1 5.9 66 13-79 53-121 (361)
194 KOG0321 WD40 repeat-containing 97.7 0.00036 7.8E-09 56.4 9.0 60 18-79 221-292 (720)
195 KOG0649 WD40 repeat protein [G 97.7 0.00022 4.7E-09 52.2 7.1 66 15-82 114-184 (325)
196 KOG4378 Nuclear protein COP1 [ 97.7 0.00018 3.9E-09 57.0 7.1 84 18-101 167-256 (673)
197 PRK02889 tolB translocation pr 97.7 0.0006 1.3E-08 52.9 10.0 62 15-78 195-259 (427)
198 KOG0270 WD40 repeat-containing 97.6 0.00081 1.7E-08 52.3 9.9 67 13-79 284-350 (463)
199 KOG2048 WD40 repeat protein [G 97.6 0.0011 2.3E-08 53.9 10.5 65 15-80 110-176 (691)
200 COG2319 FOG: WD40 repeat [Gene 97.6 0.0017 3.6E-08 46.6 10.4 64 14-79 197-262 (466)
201 KOG4714 Nucleoporin [Nuclear s 97.6 3.6E-05 7.8E-10 56.5 1.8 65 15-79 179-245 (319)
202 KOG4328 WD40 protein [Function 97.6 0.00058 1.3E-08 53.3 8.2 65 14-79 185-256 (498)
203 KOG2096 WD40 repeat protein [G 97.5 0.00044 9.6E-09 52.2 7.4 60 17-78 189-248 (420)
204 KOG4547 WD40 repeat-containing 97.5 0.00073 1.6E-08 53.8 8.7 67 12-79 99-165 (541)
205 KOG1524 WD40 repeat-containing 97.5 0.00016 3.5E-09 57.7 4.8 64 13-78 102-165 (737)
206 KOG0290 Conserved WD40 repeat- 97.5 0.00031 6.7E-09 52.4 6.0 65 14-79 286-357 (364)
207 TIGR02800 propeller_TolB tol-p 97.5 0.0015 3.3E-08 49.7 10.0 59 17-77 191-252 (417)
208 KOG2919 Guanine nucleotide-bin 97.5 0.00024 5.1E-09 53.7 5.1 58 21-79 303-361 (406)
209 PRK04922 tolB translocation pr 97.5 0.0011 2.3E-08 51.5 9.0 60 16-77 204-266 (433)
210 KOG0307 Vesicle coat complex C 97.5 0.00021 4.5E-09 60.5 5.1 70 13-82 251-321 (1049)
211 KOG0644 Uncharacterized conser 97.5 6.1E-05 1.3E-09 62.5 1.9 68 14-82 189-260 (1113)
212 KOG0280 Uncharacterized conser 97.4 0.00068 1.5E-08 50.6 7.1 68 13-80 163-233 (339)
213 PRK05137 tolB translocation pr 97.4 0.0017 3.8E-08 50.3 9.5 60 17-78 247-309 (435)
214 PRK00178 tolB translocation pr 97.4 0.0029 6.3E-08 48.8 10.4 60 16-77 199-261 (430)
215 PRK03629 tolB translocation pr 97.4 0.0023 5.1E-08 49.7 9.8 60 18-79 245-307 (429)
216 PRK01742 tolB translocation pr 97.4 0.0018 3.9E-08 50.2 9.1 58 19-78 251-311 (429)
217 KOG1587 Cytoplasmic dynein int 97.4 0.001 2.3E-08 53.6 7.8 65 15-79 242-314 (555)
218 PRK03629 tolB translocation pr 97.3 0.0035 7.6E-08 48.7 10.4 60 16-77 199-261 (429)
219 KOG0974 WD-repeat protein WDR6 97.3 0.0009 2E-08 56.3 7.4 63 14-79 174-237 (967)
220 KOG1034 Transcriptional repres 97.3 0.00061 1.3E-08 51.5 5.8 62 18-79 92-157 (385)
221 KOG0649 WD40 repeat protein [G 97.3 0.00066 1.4E-08 49.8 5.7 38 18-56 159-196 (325)
222 KOG3881 Uncharacterized conser 97.3 0.00092 2E-08 51.3 6.5 69 15-84 247-316 (412)
223 KOG4547 WD40 repeat-containing 97.3 0.0011 2.5E-08 52.8 7.1 55 18-75 147-206 (541)
224 KOG1007 WD repeat protein TSSC 97.3 0.001 2.2E-08 49.7 6.4 64 15-79 170-236 (370)
225 PRK04792 tolB translocation pr 97.3 0.0028 6.1E-08 49.6 9.2 59 17-77 219-280 (448)
226 PRK04922 tolB translocation pr 97.3 0.0035 7.6E-08 48.7 9.7 59 18-78 250-311 (433)
227 PF12894 Apc4_WD40: Anaphase-p 97.3 0.0013 2.7E-08 36.1 5.2 34 15-50 11-44 (47)
228 KOG4227 WD40 repeat protein [G 97.2 0.0015 3.2E-08 50.8 6.6 66 13-79 54-126 (609)
229 KOG0974 WD-repeat protein WDR6 97.2 0.0033 7.1E-08 53.1 9.0 63 16-79 134-196 (967)
230 PRK02889 tolB translocation pr 97.2 0.0032 6.9E-08 48.9 8.5 59 18-78 242-303 (427)
231 KOG4227 WD40 repeat protein [G 97.2 0.0062 1.3E-07 47.4 9.8 70 9-79 99-170 (609)
232 KOG1587 Cytoplasmic dynein int 97.1 0.0013 2.9E-08 53.0 6.2 71 13-84 396-472 (555)
233 PRK00178 tolB translocation pr 97.1 0.0072 1.6E-07 46.6 9.7 59 18-78 245-306 (430)
234 KOG0644 Uncharacterized conser 97.0 0.0013 2.8E-08 55.0 5.1 63 14-76 394-456 (1113)
235 PF08553 VID27: VID27 cytoplas 97.0 0.0039 8.4E-08 52.2 7.7 61 15-78 577-638 (794)
236 PRK01029 tolB translocation pr 97.0 0.011 2.4E-07 46.1 9.9 61 17-79 328-391 (428)
237 PRK11028 6-phosphogluconolacto 97.0 0.0074 1.6E-07 44.8 8.5 59 19-78 231-293 (330)
238 KOG2919 Guanine nucleotide-bin 96.9 0.0038 8.3E-08 47.3 6.7 65 15-79 207-271 (406)
239 KOG4497 Uncharacterized conser 96.9 0.0055 1.2E-07 46.7 7.5 62 16-79 92-154 (447)
240 PRK11028 6-phosphogluconolacto 96.9 0.011 2.5E-07 43.7 9.3 61 17-78 127-194 (330)
241 KOG2139 WD40 repeat protein [G 96.9 0.0067 1.5E-07 46.6 7.6 62 15-78 238-300 (445)
242 PRK04792 tolB translocation pr 96.8 0.016 3.4E-07 45.4 9.7 58 19-78 265-325 (448)
243 COG4946 Uncharacterized protei 96.8 0.018 4E-07 45.8 9.7 64 15-79 401-464 (668)
244 TIGR02800 propeller_TolB tol-p 96.8 0.02 4.4E-07 43.5 9.9 60 17-78 235-297 (417)
245 KOG1064 RAVE (regulator of V-A 96.7 0.0015 3.2E-08 58.4 3.5 55 14-79 2335-2389(2439)
246 KOG3914 WD repeat protein WDR4 96.7 0.0066 1.4E-07 46.7 6.4 64 14-79 150-214 (390)
247 KOG0322 G-protein beta subunit 96.5 0.0017 3.6E-08 48.0 2.3 32 13-45 291-322 (323)
248 PRK01029 tolB translocation pr 96.5 0.026 5.7E-07 44.0 8.9 60 19-79 284-347 (428)
249 KOG4532 WD40-like repeat conta 96.4 0.011 2.5E-07 43.9 5.9 51 19-70 207-262 (344)
250 KOG0650 WD40 repeat nucleolar 96.4 0.0066 1.4E-07 49.2 5.0 64 15-79 607-671 (733)
251 PF10282 Lactonase: Lactonase, 96.4 0.085 1.8E-06 39.8 10.8 62 17-79 246-312 (345)
252 KOG1188 WD40 repeat protein [G 96.3 0.021 4.6E-07 43.4 7.0 81 29-109 41-135 (376)
253 PF12894 Apc4_WD40: Anaphase-p 96.3 0.024 5.3E-07 31.0 5.5 32 57-99 10-41 (47)
254 PRK04043 tolB translocation pr 96.2 0.14 3.1E-06 39.9 11.6 60 17-78 189-252 (419)
255 KOG4497 Uncharacterized conser 96.2 0.021 4.6E-07 43.6 6.6 61 17-78 50-111 (447)
256 smart00320 WD40 WD40 repeats. 96.2 0.024 5.2E-07 26.6 4.9 31 49-79 3-33 (40)
257 KOG1645 RING-finger-containing 96.2 0.021 4.6E-07 44.4 6.6 61 15-77 193-254 (463)
258 PF04762 IKI3: IKI3 family; I 96.2 0.035 7.6E-07 47.5 8.4 63 15-79 75-141 (928)
259 PRK04043 tolB translocation pr 96.1 0.11 2.4E-06 40.5 10.5 72 18-99 235-309 (419)
260 KOG2321 WD40 repeat protein [G 96.1 0.04 8.7E-07 44.7 8.0 61 15-76 228-291 (703)
261 KOG3881 Uncharacterized conser 96.0 0.038 8.3E-07 42.7 7.1 62 17-79 204-268 (412)
262 TIGR02658 TTQ_MADH_Hv methylam 95.9 0.14 3.1E-06 39.3 9.9 88 23-111 53-168 (352)
263 COG0823 TolB Periplasmic compo 95.9 0.038 8.3E-07 43.3 6.9 71 20-100 242-315 (425)
264 KOG1517 Guanine nucleotide bin 95.9 0.027 5.7E-07 48.6 6.3 61 18-79 1259-1325(1387)
265 KOG1409 Uncharacterized conser 95.7 0.016 3.4E-07 44.3 4.1 66 13-79 195-261 (404)
266 KOG2695 WD40 repeat protein [G 95.7 0.012 2.6E-07 45.0 3.4 64 13-79 296-367 (425)
267 KOG1310 WD40 repeat protein [G 95.7 0.059 1.3E-06 43.7 7.4 62 18-79 626-687 (758)
268 TIGR02658 TTQ_MADH_Hv methylam 95.7 0.28 6.2E-06 37.6 10.7 57 19-77 251-318 (352)
269 KOG3617 WD40 and TPR repeat-co 95.6 0.0082 1.8E-07 50.7 2.5 63 15-78 57-121 (1416)
270 KOG4640 Anaphase-promoting com 95.6 0.03 6.5E-07 45.6 5.5 51 17-68 63-115 (665)
271 KOG2111 Uncharacterized conser 95.5 0.18 4E-06 38.2 9.0 58 22-79 141-202 (346)
272 KOG3621 WD40 repeat-containing 95.5 0.041 8.8E-07 45.3 5.9 62 17-79 78-145 (726)
273 KOG1832 HIV-1 Vpr-binding prot 95.5 0.052 1.1E-06 46.3 6.5 71 15-86 1101-1177(1516)
274 PF07433 DUF1513: Protein of u 95.4 0.09 1.9E-06 39.6 7.1 58 21-79 56-119 (305)
275 KOG1354 Serine/threonine prote 95.3 0.01 2.2E-07 45.4 1.9 60 17-76 215-290 (433)
276 KOG2314 Translation initiation 95.3 0.091 2E-06 42.6 7.0 61 18-79 252-326 (698)
277 COG2706 3-carboxymuconate cycl 95.2 0.56 1.2E-05 35.9 10.7 61 17-78 192-263 (346)
278 KOG2314 Translation initiation 95.1 0.062 1.3E-06 43.5 5.7 62 17-79 494-558 (698)
279 KOG1334 WD40 repeat protein [G 95.0 0.023 5E-07 45.1 3.0 66 13-79 140-208 (559)
280 PF08450 SGL: SMP-30/Gluconola 95.0 0.39 8.5E-06 34.1 9.2 58 18-77 186-244 (246)
281 KOG2315 Predicted translation 95.0 0.19 4E-06 40.5 7.9 61 15-79 270-332 (566)
282 KOG2079 Vacuolar assembly/sort 95.0 0.064 1.4E-06 46.2 5.6 51 13-64 128-178 (1206)
283 PLN02919 haloacid dehalogenase 94.9 0.29 6.4E-06 42.5 9.7 61 18-79 806-879 (1057)
284 KOG3914 WD repeat protein WDR4 94.9 0.03 6.4E-07 43.2 3.3 37 17-55 196-232 (390)
285 PF02897 Peptidase_S9_N: Proly 94.8 0.33 7.3E-06 37.1 9.0 80 17-98 125-209 (414)
286 PF08450 SGL: SMP-30/Gluconola 94.7 0.26 5.6E-06 35.0 7.7 62 15-79 85-154 (246)
287 KOG4190 Uncharacterized conser 94.7 0.027 5.9E-07 45.7 2.7 56 27-82 746-810 (1034)
288 PF04053 Coatomer_WDAD: Coatom 94.6 0.12 2.7E-06 40.8 6.1 49 28-79 117-165 (443)
289 KOG1334 WD40 repeat protein [G 94.4 0.026 5.6E-07 44.8 2.0 61 18-79 396-457 (559)
290 PF11768 DUF3312: Protein of u 94.4 0.12 2.6E-06 41.7 5.6 35 13-48 297-331 (545)
291 KOG1517 Guanine nucleotide bin 94.3 0.31 6.7E-06 42.4 8.2 63 17-79 1210-1278(1387)
292 PF02239 Cytochrom_D1: Cytochr 94.2 0.22 4.8E-06 38.2 6.7 53 29-81 6-59 (369)
293 COG5170 CDC55 Serine/threonine 94.0 0.04 8.8E-07 41.9 2.3 60 17-76 223-298 (460)
294 KOG2066 Vacuolar assembly/sort 94.0 0.22 4.7E-06 41.8 6.6 51 27-78 82-137 (846)
295 KOG0280 Uncharacterized conser 94.0 0.21 4.5E-06 37.7 5.9 58 11-69 206-264 (339)
296 KOG2395 Protein involved in va 94.0 0.11 2.4E-06 41.9 4.7 50 28-77 441-490 (644)
297 KOG1920 IkappaB kinase complex 93.9 0.42 9.2E-06 41.8 8.3 61 17-79 70-130 (1265)
298 KOG2041 WD40 repeat protein [G 93.7 0.2 4.4E-06 42.0 5.8 64 15-79 71-136 (1189)
299 PF14783 BBS2_Mid: Ciliary BBS 93.6 1.2 2.7E-05 28.7 10.5 58 18-79 2-62 (111)
300 PF06977 SdiA-regulated: SdiA- 93.6 0.54 1.2E-05 34.4 7.5 61 15-76 170-239 (248)
301 COG3490 Uncharacterized protei 93.4 0.37 7.9E-06 36.4 6.3 56 22-78 120-181 (366)
302 KOG0309 Conserved WD40 repeat- 93.3 0.12 2.6E-06 43.3 4.0 66 14-79 113-180 (1081)
303 PF10313 DUF2415: Uncharacteri 93.1 0.72 1.6E-05 24.7 5.6 31 17-47 2-34 (43)
304 COG4946 Uncharacterized protei 93.0 1.1 2.3E-05 36.1 8.7 59 18-78 362-421 (668)
305 KOG4714 Nucleoporin [Nuclear s 92.6 0.085 1.8E-06 39.2 2.1 34 14-47 222-255 (319)
306 PF04762 IKI3: IKI3 family; I 92.4 0.41 9E-06 41.1 6.2 59 18-78 212-276 (928)
307 PF10282 Lactonase: Lactonase, 92.4 1.3 2.7E-05 33.4 8.2 59 18-77 39-105 (345)
308 PLN02919 haloacid dehalogenase 92.2 2.3 5E-05 37.2 10.5 61 18-79 685-760 (1057)
309 COG2706 3-carboxymuconate cycl 91.9 1.7 3.6E-05 33.4 8.3 63 14-77 38-107 (346)
310 PF07569 Hira: TUP1-like enhan 91.9 1.4 2.9E-05 31.6 7.5 51 27-77 21-85 (219)
311 PF07676 PD40: WD40-like Beta 91.9 0.61 1.3E-05 23.6 4.3 24 56-79 6-29 (39)
312 TIGR02781 VirB9 P-type conjuga 91.8 0.87 1.9E-05 33.1 6.5 63 34-100 24-88 (243)
313 KOG4499 Ca2+-binding protein R 91.7 4.2 9.1E-05 30.1 10.2 62 20-82 216-278 (310)
314 PF00930 DPPIV_N: Dipeptidyl p 91.6 0.7 1.5E-05 34.9 6.1 62 16-79 43-121 (353)
315 KOG1240 Protein kinase contain 91.1 1.2 2.7E-05 39.3 7.6 63 15-78 1195-1261(1431)
316 PF00930 DPPIV_N: Dipeptidyl p 90.9 0.81 1.8E-05 34.6 5.8 41 37-78 22-62 (353)
317 KOG1645 RING-finger-containing 90.5 1 2.2E-05 35.4 6.0 64 16-79 236-308 (463)
318 PF15492 Nbas_N: Neuroblastoma 90.4 1 2.2E-05 33.6 5.7 40 15-55 229-268 (282)
319 PRK13861 type IV secretion sys 90.4 1.4 3.1E-05 33.0 6.6 62 35-100 29-92 (292)
320 PRK13885 conjugal transfer pro 90.2 1.5 3.3E-05 33.0 6.6 66 32-100 64-136 (299)
321 COG5354 Uncharacterized protei 90.1 1.2 2.5E-05 35.9 6.1 59 15-77 274-334 (561)
322 PRK13616 lipoprotein LpqB; Pro 89.7 1.2 2.5E-05 36.6 6.1 56 18-77 399-466 (591)
323 PF15492 Nbas_N: Neuroblastoma 89.7 1.6 3.4E-05 32.6 6.2 46 20-67 48-100 (282)
324 PF14761 HPS3_N: Hermansky-Pud 89.5 2.7 5.8E-05 30.2 7.1 46 29-75 29-76 (215)
325 KOG4649 PQQ (pyrrolo-quinoline 89.4 2.1 4.5E-05 32.2 6.7 53 22-75 100-153 (354)
326 PRK10115 protease 2; Provision 89.2 6.7 0.00015 32.7 10.3 61 16-79 127-192 (686)
327 smart00564 PQQ beta-propeller 89.2 1.5 3.2E-05 21.1 4.2 25 29-53 7-31 (33)
328 PF14870 PSII_BNR: Photosynthe 89.0 4.3 9.3E-05 30.6 8.2 61 17-79 188-253 (302)
329 COG3386 Gluconolactonase [Carb 88.9 2.2 4.7E-05 32.2 6.6 63 15-79 110-183 (307)
330 KOG2066 Vacuolar assembly/sort 88.5 1.7 3.8E-05 36.7 6.3 60 16-79 113-179 (846)
331 KOG2041 WD40 repeat protein [G 88.3 2 4.3E-05 36.4 6.4 65 14-79 13-92 (1189)
332 KOG1354 Serine/threonine prote 88.3 1.3 2.7E-05 34.3 5.0 68 10-79 159-235 (433)
333 PRK02888 nitrous-oxide reducta 88.3 2.9 6.3E-05 34.7 7.4 42 37-78 295-340 (635)
334 KOG1064 RAVE (regulator of V-A 88.2 1.1 2.4E-05 41.3 5.2 64 15-79 2208-2272(2439)
335 KOG3616 Selective LIM binding 88.0 1.5 3.3E-05 37.5 5.6 64 1-70 4-67 (1636)
336 PF01011 PQQ: PQQ enzyme repea 87.9 1.9 4.1E-05 21.9 4.2 27 30-56 2-28 (38)
337 COG5354 Uncharacterized protei 87.6 0.72 1.6E-05 37.1 3.5 60 14-77 31-90 (561)
338 PF15390 DUF4613: Domain of un 86.9 4.1 8.8E-05 33.7 7.4 64 20-84 117-186 (671)
339 TIGR02276 beta_rpt_yvtn 40-res 86.9 2.7 5.8E-05 21.1 5.7 39 27-66 2-41 (42)
340 KOG1275 PAB-dependent poly(A) 86.9 2.3 5E-05 36.7 6.2 55 18-77 180-234 (1118)
341 PF06977 SdiA-regulated: SdiA- 86.5 6.6 0.00014 28.7 7.8 58 17-77 23-82 (248)
342 PF14583 Pectate_lyase22: Olig 86.3 5.7 0.00012 31.0 7.7 31 62-100 354-384 (386)
343 KOG0882 Cyclophilin-related pe 86.3 2.7 5.9E-05 33.6 5.9 66 13-79 142-222 (558)
344 PF11715 Nup160: Nucleoporin N 86.1 2.3 5.1E-05 34.0 5.8 27 28-54 230-256 (547)
345 KOG4532 WD40-like repeat conta 85.7 8.6 0.00019 29.0 8.0 61 18-79 161-224 (344)
346 COG0823 TolB Periplasmic compo 85.4 5.8 0.00012 31.3 7.5 62 16-79 193-258 (425)
347 PF14870 PSII_BNR: Photosynthe 85.3 10 0.00022 28.6 8.5 60 16-76 145-204 (302)
348 KOG1920 IkappaB kinase complex 84.5 2.4 5.1E-05 37.5 5.2 56 19-76 199-259 (1265)
349 PF04841 Vps16_N: Vps16, N-ter 84.4 11 0.00024 29.4 8.6 54 16-70 217-271 (410)
350 KOG3621 WD40 repeat-containing 84.3 3.2 7E-05 34.6 5.8 81 18-100 36-121 (726)
351 TIGR03300 assembly_YfgL outer 84.1 3.4 7.3E-05 31.2 5.6 50 28-79 320-370 (377)
352 TIGR02171 Fb_sc_TIGR02171 Fibr 83.9 6.3 0.00014 34.0 7.4 58 37-100 328-386 (912)
353 PF03088 Str_synth: Strictosid 83.8 8 0.00017 23.8 7.5 42 35-77 34-75 (89)
354 KOG3630 Nuclear pore complex, 83.3 0.86 1.9E-05 40.0 2.2 63 17-79 157-219 (1405)
355 COG3391 Uncharacterized conser 83.0 19 0.00041 27.7 10.4 58 18-77 118-178 (381)
356 COG5167 VID27 Protein involved 82.9 3 6.4E-05 34.2 4.9 51 28-78 573-623 (776)
357 KOG2695 WD40 repeat protein [G 82.3 2 4.4E-05 33.2 3.7 44 23-67 354-401 (425)
358 COG5170 CDC55 Serine/threonine 82.3 3.5 7.7E-05 31.7 4.9 61 15-77 280-356 (460)
359 KOG2114 Vacuolar assembly/sort 81.6 14 0.0003 31.8 8.5 64 14-78 124-193 (933)
360 PF10647 Gmad1: Lipoprotein Lp 81.6 17 0.00038 26.3 9.2 61 17-78 67-131 (253)
361 PF08596 Lgl_C: Lethal giant l 81.3 9.7 0.00021 29.7 7.2 51 15-67 86-144 (395)
362 PRK13839 conjugal transfer pro 81.1 13 0.00027 27.8 7.4 66 31-100 52-125 (277)
363 KOG1275 PAB-dependent poly(A) 81.1 7.7 0.00017 33.7 6.9 67 19-85 269-343 (1118)
364 TIGR02604 Piru_Ver_Nterm putat 79.8 9.4 0.0002 29.1 6.7 60 16-77 124-202 (367)
365 KOG2444 WD40 repeat protein [G 79.5 9 0.00019 28.0 6.0 58 27-84 113-177 (238)
366 PF10647 Gmad1: Lipoprotein Lp 78.7 18 0.00039 26.2 7.6 62 17-79 113-186 (253)
367 PF08596 Lgl_C: Lethal giant l 78.6 26 0.00057 27.3 8.8 81 17-100 3-127 (395)
368 PF10214 Rrn6: RNA polymerase 78.3 14 0.0003 31.3 7.7 30 16-45 146-175 (765)
369 PF03022 MRJP: Major royal jel 77.5 19 0.00041 26.7 7.5 61 17-78 187-255 (287)
370 COG3204 Uncharacterized protei 77.5 22 0.00048 27.0 7.7 58 18-77 88-146 (316)
371 KOG2114 Vacuolar assembly/sort 77.3 23 0.0005 30.6 8.5 63 15-79 171-235 (933)
372 KOG2079 Vacuolar assembly/sort 77.3 4.1 8.8E-05 35.8 4.2 55 29-83 100-159 (1206)
373 TIGR02775 TrbG_Ti P-type conju 76.7 15 0.00033 25.9 6.5 51 50-100 10-67 (206)
374 PF05694 SBP56: 56kDa selenium 76.2 13 0.00028 29.7 6.5 64 18-82 314-399 (461)
375 PF01731 Arylesterase: Arylest 76.1 15 0.00033 22.4 6.7 50 37-99 35-84 (86)
376 KOG1912 WD40 repeat protein [G 75.6 5.7 0.00012 34.0 4.6 63 3-68 3-65 (1062)
377 PRK13684 Ycf48-like protein; P 75.1 28 0.00062 26.2 8.0 59 16-77 173-233 (334)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 74.5 7.6 0.00017 30.6 4.9 41 18-59 310-350 (415)
379 KOG4649 PQQ (pyrrolo-quinoline 74.5 13 0.00027 28.1 5.7 52 28-79 63-114 (354)
380 KOG3617 WD40 and TPR repeat-co 73.9 6.8 0.00015 34.0 4.7 58 13-71 99-162 (1416)
381 PF10168 Nup88: Nuclear pore c 73.7 11 0.00023 31.9 5.8 32 16-48 147-181 (717)
382 COG3386 Gluconolactonase [Carb 73.1 24 0.00053 26.6 7.2 57 20-78 217-275 (307)
383 TIGR03075 PQQ_enz_alc_DH PQQ-d 71.4 14 0.00031 29.8 5.9 45 29-73 473-518 (527)
384 PF13570 PQQ_3: PQQ-like domai 71.3 9.2 0.0002 19.3 3.3 19 29-47 22-40 (40)
385 PF07433 DUF1513: Protein of u 70.8 32 0.0007 26.1 7.3 50 18-70 219-269 (305)
386 PF00780 CNH: CNH domain; Int 70.7 36 0.00077 24.3 7.6 48 27-76 6-53 (275)
387 PRK02888 nitrous-oxide reducta 70.7 35 0.00076 28.5 7.9 59 19-78 378-451 (635)
388 KOG0309 Conserved WD40 repeat- 70.7 2.6 5.6E-05 35.8 1.5 58 14-71 200-258 (1081)
389 KOG0882 Cyclophilin-related pe 70.4 7.5 0.00016 31.2 4.0 36 18-54 204-239 (558)
390 TIGR03300 assembly_YfgL outer 69.3 39 0.00085 25.4 7.7 26 29-54 106-131 (377)
391 PRK13616 lipoprotein LpqB; Pro 69.3 35 0.00077 28.1 7.8 79 17-99 351-438 (591)
392 KOG1912 WD40 repeat protein [G 68.6 8.8 0.00019 32.9 4.2 50 30-79 439-488 (1062)
393 TIGR03606 non_repeat_PQQ dehyd 68.2 61 0.0013 26.0 9.3 70 28-97 369-450 (454)
394 PF14783 BBS2_Mid: Ciliary BBS 68.0 30 0.00064 22.3 7.4 58 17-79 44-105 (111)
395 cd00216 PQQ_DH Dehydrogenases 66.7 23 0.0005 28.1 6.2 44 28-72 406-451 (488)
396 TIGR03074 PQQ_membr_DH membran 66.6 24 0.00053 30.0 6.5 51 28-78 691-745 (764)
397 PF06433 Me-amine-dh_H: Methyl 66.4 21 0.00046 27.5 5.6 41 16-57 289-331 (342)
398 PF04841 Vps16_N: Vps16, N-ter 65.7 52 0.0011 25.7 7.8 22 58-79 216-237 (410)
399 KOG3522 Predicted guanine nucl 65.4 12 0.00026 32.1 4.4 61 15-79 626-689 (925)
400 KOG1409 Uncharacterized conser 65.0 22 0.00048 27.6 5.4 66 13-79 66-135 (404)
401 TIGR02608 delta_60_rpt delta-6 65.0 13 0.00027 20.9 3.2 20 60-79 2-21 (55)
402 PF13360 PQQ_2: PQQ-like domai 64.9 21 0.00045 24.6 5.1 25 27-51 211-235 (238)
403 KOG1008 Uncharacterized conser 63.8 7.5 0.00016 32.5 2.9 62 17-79 197-265 (783)
404 TIGR02604 Piru_Ver_Nterm putat 63.2 57 0.0012 24.8 7.5 61 15-77 13-89 (367)
405 PF13360 PQQ_2: PQQ-like domai 62.0 15 0.00033 25.2 4.0 29 28-56 36-64 (238)
406 PF12234 Rav1p_C: RAVE protein 61.8 69 0.0015 26.8 8.1 50 30-79 42-96 (631)
407 KOG4190 Uncharacterized conser 61.8 3 6.5E-05 34.4 0.3 40 17-57 878-917 (1034)
408 PF07995 GSDH: Glucose / Sorbo 61.4 67 0.0015 24.1 8.8 58 17-77 3-71 (331)
409 PRK13684 Ycf48-like protein; P 61.3 55 0.0012 24.7 7.1 60 16-77 215-278 (334)
410 KOG2109 WD40 repeat protein [G 61.3 13 0.00027 31.3 3.7 40 40-79 297-336 (788)
411 KOG2377 Uncharacterized conser 60.7 70 0.0015 26.2 7.6 60 18-79 25-87 (657)
412 KOG2377 Uncharacterized conser 59.7 32 0.00069 28.0 5.6 59 15-75 66-128 (657)
413 PF11635 Med16: Mediator compl 59.1 54 0.0012 27.8 7.3 63 16-79 260-341 (753)
414 PF14655 RAB3GAP2_N: Rab3 GTPa 58.7 21 0.00045 28.2 4.5 41 27-68 78-118 (415)
415 PF10584 Proteasome_A_N: Prote 58.4 2.2 4.8E-05 19.8 -0.6 9 65-73 7-15 (23)
416 PRK11138 outer membrane biogen 57.3 41 0.00089 25.6 5.9 27 29-55 336-362 (394)
417 PF12234 Rav1p_C: RAVE protein 56.3 1.1E+02 0.0025 25.6 8.4 62 15-77 72-147 (631)
418 PF03524 CagX: Conjugal transf 56.1 3.7 8.1E-05 29.0 0.0 46 53-100 16-63 (214)
419 PF12341 DUF3639: Protein of u 54.9 24 0.00052 16.9 3.7 23 18-43 4-26 (27)
420 COG3391 Uncharacterized conser 54.7 96 0.0021 23.8 8.0 62 19-81 163-229 (381)
421 PF01436 NHL: NHL repeat; Int 53.9 24 0.00051 16.5 3.6 22 19-41 5-26 (28)
422 PF05787 DUF839: Bacterial pro 53.6 74 0.0016 25.9 6.9 20 57-76 500-519 (524)
423 PLN00033 photosystem II stabil 53.1 83 0.0018 24.6 7.0 60 16-78 281-347 (398)
424 PF03178 CPSF_A: CPSF A subuni 51.5 79 0.0017 23.3 6.5 59 15-79 88-148 (321)
425 PF06739 SBBP: Beta-propeller 50.9 33 0.00072 17.4 3.4 21 17-38 14-34 (38)
426 PF12768 Rax2: Cortical protei 50.6 34 0.00073 25.5 4.3 39 39-77 17-55 (281)
427 KOG3630 Nuclear pore complex, 50.1 68 0.0015 29.0 6.4 59 15-75 198-260 (1405)
428 cd04970 Ig6_Contactin_like Six 49.9 50 0.0011 19.1 4.7 49 63-111 18-68 (85)
429 PF07995 GSDH: Glucose / Sorbo 48.6 1.1E+02 0.0024 23.0 6.9 62 16-77 253-324 (331)
430 TIGR03606 non_repeat_PQQ dehyd 48.6 1.4E+02 0.0031 23.9 8.9 55 15-70 29-90 (454)
431 PF02897 Peptidase_S9_N: Proly 48.3 1.2E+02 0.0026 23.1 10.8 58 21-79 175-247 (414)
432 COG3211 PhoX Predicted phospha 48.3 73 0.0016 26.5 6.1 59 18-77 502-572 (616)
433 PF08728 CRT10: CRT10; InterP 47.8 1.1E+02 0.0024 26.1 7.2 63 15-78 100-185 (717)
434 KOG1983 Tomosyn and related SN 46.8 23 0.0005 31.1 3.3 37 13-50 232-268 (993)
435 COG1770 PtrB Protease II [Amin 46.7 1.8E+02 0.0039 24.7 8.3 61 16-79 129-194 (682)
436 PLN00033 photosystem II stabil 46.2 1.4E+02 0.0031 23.3 8.1 59 16-77 328-389 (398)
437 PF10168 Nup88: Nuclear pore c 46.1 1.9E+02 0.0041 24.7 10.1 65 14-79 83-170 (717)
438 PF04053 Coatomer_WDAD: Coatom 45.6 1E+02 0.0022 24.5 6.5 47 18-71 35-81 (443)
439 PF08801 Nucleoporin_N: Nup133 44.1 55 0.0012 25.3 4.8 29 18-47 192-220 (422)
440 cd05848 Ig1_Contactin-5 First 43.0 45 0.00098 20.0 3.4 47 60-111 32-80 (94)
441 COG4246 Uncharacterized protei 42.8 1.1E+02 0.0024 23.2 5.8 54 48-101 63-124 (340)
442 PRK11138 outer membrane biogen 41.9 1.5E+02 0.0032 22.5 6.8 27 29-55 121-147 (394)
443 KOG4460 Nuclear pore complex, 41.8 49 0.0011 27.5 4.2 37 18-55 168-207 (741)
444 cd05853 Ig6_Contactin-4 Sixth 39.4 73 0.0016 19.1 3.9 51 62-112 17-69 (85)
445 KOG1916 Nuclear protein, conta 39.2 34 0.00074 30.1 3.1 35 23-58 243-282 (1283)
446 PF08954 DUF1900: Domain of un 38.3 1.2E+02 0.0026 20.1 6.2 53 15-68 10-66 (136)
447 KOG1008 Uncharacterized conser 37.4 7.6 0.00016 32.5 -0.9 65 16-82 155-223 (783)
448 cd05852 Ig5_Contactin-1 Fifth 36.3 50 0.0011 18.8 2.7 48 59-112 13-61 (73)
449 TIGR03032 conserved hypothetic 36.3 1.4E+02 0.0031 23.0 5.7 49 28-79 213-261 (335)
450 PF12566 DUF3748: Protein of u 35.0 1.1E+02 0.0024 20.0 4.3 18 62-79 71-88 (122)
451 smart00135 LY Low-density lipo 34.5 61 0.0013 15.7 3.8 31 16-47 9-40 (43)
452 TIGR03118 PEPCTERM_chp_1 conse 32.4 2.4E+02 0.0051 21.8 6.8 53 18-71 25-89 (336)
453 PF07250 Glyoxal_oxid_N: Glyox 31.9 1.9E+02 0.0041 21.1 5.7 38 21-61 175-212 (243)
454 PF14269 Arylsulfotran_2: Aryl 31.7 1.7E+02 0.0038 21.8 5.6 42 15-57 143-184 (299)
455 PF09142 TruB_C: tRNA Pseudour 31.5 63 0.0014 17.9 2.5 14 63-76 29-42 (56)
456 COG3504 VirB9 Type IV secretor 31.1 2.2E+02 0.0047 21.1 6.6 67 30-100 28-96 (265)
457 KOG1832 HIV-1 Vpr-binding prot 30.9 1.1E+02 0.0024 27.3 4.8 30 50-79 1093-1122(1516)
458 PF15390 DUF4613: Domain of un 30.8 3.3E+02 0.0072 23.0 8.9 58 21-79 344-405 (671)
459 PF13449 Phytase-like: Esteras 30.5 2.3E+02 0.005 21.2 7.6 61 17-79 86-167 (326)
460 PF12768 Rax2: Cortical protei 30.1 2.3E+02 0.0051 21.1 8.0 61 15-77 36-109 (281)
461 PF00780 CNH: CNH domain; Int 29.8 1.5E+02 0.0032 21.0 4.9 25 30-55 240-264 (275)
462 PF01344 Kelch_1: Kelch motif; 29.7 79 0.0017 15.9 2.6 22 28-49 12-39 (47)
463 COG4831 Roadblock/LC7 domain [ 29.7 67 0.0015 20.3 2.6 21 57-77 11-31 (109)
464 PF14583 Pectate_lyase22: Olig 29.6 1.2E+02 0.0026 23.9 4.5 53 22-75 42-97 (386)
465 KOG2109 WD40 repeat protein [G 29.4 52 0.0011 27.9 2.6 65 13-79 313-389 (788)
466 KOG1916 Nuclear protein, conta 29.3 27 0.00058 30.7 1.0 62 18-80 183-257 (1283)
467 PF14779 BBS1: Ciliary BBSome 27.8 2.6E+02 0.0055 20.8 7.7 33 29-61 196-228 (257)
468 COG4257 Vgb Streptogramin lyas 27.8 2.6E+02 0.0056 21.5 5.8 56 18-74 64-119 (353)
469 PF13418 Kelch_4: Galactose ox 27.5 67 0.0015 16.5 2.1 23 27-49 12-40 (49)
470 PF12657 TFIIIC_delta: Transcr 27.4 58 0.0013 22.0 2.3 17 61-77 7-23 (173)
471 PF06433 Me-amine-dh_H: Methyl 27.0 1.2E+02 0.0026 23.4 4.1 40 38-79 17-56 (342)
472 KOG1897 Damage-specific DNA bi 26.7 2.2E+02 0.0048 25.4 5.9 44 34-77 844-887 (1096)
473 PF13964 Kelch_6: Kelch motif 26.6 85 0.0018 16.2 2.4 21 29-49 13-39 (50)
474 cd00216 PQQ_DH Dehydrogenases 26.6 3.1E+02 0.0067 21.8 6.5 28 29-56 111-138 (488)
475 KOG1520 Predicted alkaloid syn 26.5 71 0.0015 25.0 2.8 43 34-77 195-237 (376)
476 TIGR03074 PQQ_membr_DH membran 25.4 2.6E+02 0.0056 24.1 6.1 19 37-55 335-353 (764)
477 cd05750 Ig_Pro_neuregulin Immu 25.4 82 0.0018 17.3 2.4 51 60-110 12-63 (75)
478 KOG4460 Nuclear pore complex, 25.1 2.9E+02 0.0063 23.2 6.0 29 14-43 102-130 (741)
479 PRK14751 tetracycline resistan 25.0 49 0.0011 15.6 1.1 11 36-46 13-23 (28)
480 PF13449 Phytase-like: Esteras 25.0 3E+02 0.0064 20.6 8.6 63 12-75 143-231 (326)
481 PF14727 PHTB1_N: PTHB1 N-term 24.9 2.9E+02 0.0062 21.9 5.9 47 29-78 146-194 (418)
482 PF08728 CRT10: CRT10; InterP 24.7 2.9E+02 0.0062 23.7 6.1 52 17-69 165-221 (717)
483 KOG2467 Glycine/serine hydroxy 24.0 69 0.0015 25.4 2.3 21 27-47 340-360 (477)
484 cd05854 Ig6_Contactin-2 Sixth 23.9 1.6E+02 0.0035 17.1 3.8 20 92-111 48-68 (85)
485 cd04967 Ig1_Contactin First Ig 23.6 1.3E+02 0.0028 17.5 3.1 46 61-111 33-80 (91)
486 PF14157 YmzC: YmzC-like prote 22.2 1.3E+02 0.0029 17.4 2.7 19 28-46 29-47 (63)
487 cd05892 Ig_Myotilin_C C-termin 21.3 58 0.0013 18.8 1.2 51 60-111 11-62 (75)
488 PF14727 PHTB1_N: PTHB1 N-term 21.2 4.3E+02 0.0092 21.0 7.3 38 29-67 38-80 (418)
489 cd05875 Ig6_hNeurofascin_like 20.9 1.8E+02 0.0039 16.5 3.6 51 58-111 9-64 (77)
490 cd04978 Ig4_L1-NrCAM_like Four 20.5 1.1E+02 0.0024 16.8 2.3 45 63-111 17-62 (76)
No 1
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.87 E-value=3e-22 Score=146.59 Aligned_cols=99 Identities=24% Similarity=0.512 Sum_probs=91.2
Q ss_pred CceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 1 MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 1 ~~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
+|||||+++.....+|+||+|+|+| ....|+|+|.||++.+||-+.+..++..+.++.+|++++|+.+|.++|.+.+++
T Consensus 237 tFkCHR~~~~~~~~VYaVNsi~FhP-~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 237 TFKCHRSTNSVNDDVYAVNSIAFHP-VHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred eEEEeccCCCCCCceEEecceEeec-ccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 6999999776444699999999999 889999999999999999999988888889999999999999999999999999
Q ss_pred ccccccc---CCCCcEEEEEcCc
Q 033677 81 YQEATVI---EEPPQIFIIRIDD 100 (114)
Q Consensus 81 ~~~~~~~---~~~~~i~i~~~~~ 100 (114)
|..|+|. +.+++||||.+..
T Consensus 316 WSkGhe~~n~~~~~~I~l~~~~~ 338 (347)
T KOG0647|consen 316 WSKGHEGNNPQYKPQIFLHPVST 338 (347)
T ss_pred cccccccCCCCCCCeEEEeeccc
Confidence 9999885 8888999999974
No 2
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=2.5e-20 Score=136.49 Aligned_cols=100 Identities=39% Similarity=0.719 Sum_probs=92.8
Q ss_pred CceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 1 MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 1 ~~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
+|||||+..++....+|||+|+|+| -..+|+||+.||.|.+||+.+++.+..+......|.+++|+-||..||+|+++.
T Consensus 218 aFkCHr~~~~~~~~~yPVNai~Fhp-~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~sy~ 296 (323)
T KOG1036|consen 218 AFKCHRLSEKDTEIIYPVNAIAFHP-IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASSYQ 296 (323)
T ss_pred eEEeeecccCCceEEEEeceeEecc-ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEechh
Confidence 6999999999999999999999999 888999999999999999999999998888888899999999999999999999
Q ss_pred cccccc-cCCCCcEEEEEcCcc
Q 033677 81 YQEATV-IEEPPQIFIIRIDDI 101 (114)
Q Consensus 81 ~~~~~~-~~~~~~i~i~~~~~~ 101 (114)
++++.. ....++||||.+.+-
T Consensus 297 ye~~~~~~~~~~~i~I~~l~d~ 318 (323)
T KOG1036|consen 297 YERADTPTHERNAIFIRDLTDY 318 (323)
T ss_pred hhcCCCCCCCCCceEEEecccc
Confidence 998877 577788999999774
No 3
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.43 E-value=5.9e-13 Score=106.74 Aligned_cols=86 Identities=21% Similarity=0.346 Sum_probs=73.9
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccccc---
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEATV--- 86 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~~--- 86 (114)
|...|.++.||| +.+++++||.|.++++||+.++..++.|.+|..+|++++|||+|++||+|+.| .|+.+..
T Consensus 534 hlsDV~cv~FHP-Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v 612 (707)
T KOG0263|consen 534 HLSDVDCVSFHP-NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV 612 (707)
T ss_pred cccccceEEECC-cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch
Confidence 466688999999 99999999999999999999999999999999999999999999999999998 6886652
Q ss_pred ---cCCCCcEEEEEcCc
Q 033677 87 ---IEEPPQIFIIRIDD 100 (114)
Q Consensus 87 ---~~~~~~i~i~~~~~ 100 (114)
..++..|+-.+.+-
T Consensus 613 ~~l~~Ht~ti~SlsFS~ 629 (707)
T KOG0263|consen 613 KQLKGHTGTIYSLSFSR 629 (707)
T ss_pred hhhhcccCceeEEEEec
Confidence 24455566555543
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.37 E-value=2.2e-12 Score=97.65 Aligned_cols=73 Identities=26% Similarity=0.387 Sum_probs=67.0
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc--cccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ--EATV 86 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~--~~~~ 86 (114)
-|..+|.+++|+| ++..|++|+.|.++++||+.+...+++.++|..-|.+++|+|||+.||+|+.| .|+ .|.+
T Consensus 113 GH~e~Vl~~~fsp-~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~ 191 (480)
T KOG0271|consen 113 GHGEAVLSVQFSP-TGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ 191 (480)
T ss_pred CCCCcEEEEEecC-CCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence 3577899999999 99999999999999999999999999999999999999999999999999988 576 5544
No 5
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.37 E-value=3.2e-12 Score=99.66 Aligned_cols=70 Identities=29% Similarity=0.509 Sum_probs=63.8
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
|...|++++|+| +++++++|+.|++|++||+++++++..+.+|...|++++|+++|.+|++++.| .|+..
T Consensus 245 H~~~v~~~~f~p-~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 245 HSTYVTSVAFSP-DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred CCCceEEEEecC-CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence 356689999999 88999999999999999999999999999999999999999999999999877 46633
No 6
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.36 E-value=1.2e-12 Score=99.65 Aligned_cols=68 Identities=24% Similarity=0.368 Sum_probs=64.6
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
|..+|.+|+|+| ++.+++|||.|..-++||++++.++..+.+|..+|.+|+|+|+|..||+|++| .|+
T Consensus 302 Hs~~v~~iaf~~-DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWD 373 (459)
T KOG0272|consen 302 HSKGVFSIAFQP-DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWD 373 (459)
T ss_pred cccccceeEecC-CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEee
Confidence 467899999999 99999999999999999999999999999999999999999999999999999 576
No 7
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.28 E-value=1.3e-11 Score=89.68 Aligned_cols=69 Identities=28% Similarity=0.414 Sum_probs=63.6
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~ 82 (114)
+|.....+|.|.| ++..|++|+.|..+.+||++...|++.+..++.||..++||-||++||+||.|.++
T Consensus 187 AH~snCicI~f~p-~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 187 AHPSNCICIEFDP-DGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred cCCcceEEEEECC-CCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceE
Confidence 4555667889999 99999999999999999999999999999999999999999999999999999665
No 8
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.27 E-value=3e-11 Score=92.25 Aligned_cols=88 Identities=22% Similarity=0.347 Sum_probs=72.0
Q ss_pred CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Ccccc-
Q 033677 12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TYQEA- 84 (114)
Q Consensus 12 ~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~~~~- 84 (114)
..|..+|++++|+|.+...|||||.|++|.+||+|+. +++..+.+|...|..|.|||.- .+||+++.| .|+..
T Consensus 269 ~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ 348 (422)
T KOG0264|consen 269 KAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSR 348 (422)
T ss_pred cccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccc
Confidence 3678899999999977789999999999999999984 5778889999999999999975 588888888 57633
Q ss_pred --ccc-------CCCCcEEEEEcC
Q 033677 85 --TVI-------EEPPQIFIIRID 99 (114)
Q Consensus 85 --~~~-------~~~~~i~i~~~~ 99 (114)
+++ .+|.-+|+|--.
T Consensus 349 ig~eq~~eda~dgppEllF~HgGH 372 (422)
T KOG0264|consen 349 IGEEQSPEDAEDGPPELLFIHGGH 372 (422)
T ss_pred cccccChhhhccCCcceeEEecCc
Confidence 222 566678888653
No 9
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=99.27 E-value=1.4e-11 Score=93.89 Aligned_cols=65 Identities=31% Similarity=0.541 Sum_probs=61.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d 79 (114)
|..+|.+|+|+| ++..|+|||.|+++++||++...+++.+++|.+.|+.|+|+| .|.+|++++-|
T Consensus 344 H~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD 409 (459)
T KOG0272|consen 344 HIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYD 409 (459)
T ss_pred cccceeeEeECC-CceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccC
Confidence 689999999999 999999999999999999999999999999999999999999 67888888877
No 10
>PTZ00421 coronin; Provisional
Probab=99.22 E-value=2.1e-10 Score=90.52 Aligned_cols=65 Identities=26% Similarity=0.410 Sum_probs=60.2
Q ss_pred eecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|..+|.+|+|+| ++ ++|++++.|+.|++||+++++.+..+..|...|.+++|+|+|.+||+++.|
T Consensus 124 H~~~V~~l~f~P-~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~D 189 (493)
T PTZ00421 124 HTKKVGIVSFHP-SAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKD 189 (493)
T ss_pred CCCcEEEEEeCc-CCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCC
Confidence 567899999999 65 799999999999999999998888888899999999999999999999988
No 11
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=99.22 E-value=3.5e-11 Score=96.66 Aligned_cols=71 Identities=21% Similarity=0.292 Sum_probs=66.3
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
-|..||..+.|+| +.++|+++|.|+++++|.+++..++..+++|..||..+.|+|-|.+||+++.| .|..-
T Consensus 449 GH~GPVyg~sFsP-d~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 449 GHSGPVYGCSFSP-DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred cCCCceeeeeecc-cccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 4588999999999 99999999999999999999999999999999999999999999999999988 67633
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.21 E-value=2.1e-10 Score=89.53 Aligned_cols=71 Identities=28% Similarity=0.464 Sum_probs=64.2
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeC-CCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDA-QSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~-~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
.|...|++++|+| ++..+++++.|++|++||+ ..+.+++.+.+|...|++++|+|+|+++++|+.| .|+..
T Consensus 201 ~h~~~v~~~~fs~-d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~ 276 (456)
T KOG0266|consen 201 GHTRGVSDVAFSP-DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR 276 (456)
T ss_pred ccccceeeeEECC-CCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence 4577899999999 9999999999999999999 5568899999999999999999999999999998 57644
No 13
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.18 E-value=9e-11 Score=86.38 Aligned_cols=66 Identities=21% Similarity=0.350 Sum_probs=62.3
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...|.+|++.|.++++|++|+.|+..++||++.+.+.+.|.+|...|++|+|.|+|.-||+|+.|
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD 250 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDD 250 (343)
T ss_pred CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCC
Confidence 566799999999667999999999999999999999999999999999999999999999999988
No 14
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.17 E-value=8.4e-11 Score=90.14 Aligned_cols=64 Identities=27% Similarity=0.505 Sum_probs=61.0
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC----cc
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT----YQ 82 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~----~~ 82 (114)
+++++||| |+.+|.+|..||.+++||+.++..+..|++|.++|.+|+|+.+|.+||+++.|. |+
T Consensus 350 ~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWD 417 (506)
T ss_pred eEEeeEcC-CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEE
Confidence 78999999 999999999999999999999999999999999999999999999999999884 76
No 15
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.15 E-value=1.3e-10 Score=85.02 Aligned_cols=67 Identities=19% Similarity=0.217 Sum_probs=61.3
Q ss_pred ecCeEEEEECCCC--CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 15 LVPVNDVVFSPLS--RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 15 ~~~V~~v~f~p~~--~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
...|+++.|+| + ...|+++|.|+++++||+++.+....+.+|...++.+++||||.++|+|..| .|+
T Consensus 148 ~~WVscvrfsP-~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 148 REWVSCVRFSP-NESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred cCcEEEEEEcC-CCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEE
Confidence 56799999999 6 4689999999999999999999888899999999999999999999999988 566
No 16
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.13 E-value=6.1e-10 Score=90.02 Aligned_cols=97 Identities=19% Similarity=0.357 Sum_probs=80.9
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc----
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA---- 84 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~---- 84 (114)
-|...+++++++| |+++++||++||.|++||..++-|+.+|..|...|+.+.|+..|+.|.+++-| .|+.-
T Consensus 348 gH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN 426 (893)
T KOG0291|consen 348 GHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN 426 (893)
T ss_pred ccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce
Confidence 4578899999999 99999999999999999999999999999999999999999999999999988 57633
Q ss_pred -cccCCCCcEEEEEcCcc-cccceeeec
Q 033677 85 -TVIEEPPQIFIIRIDDI-QQQSACVGS 110 (114)
Q Consensus 85 -~~~~~~~~i~i~~~~~~-~~~~~~~~~ 110 (114)
..+..|..+..-.+..+ .+...|.|.
T Consensus 427 fRTft~P~p~QfscvavD~sGelV~AG~ 454 (893)
T KOG0291|consen 427 FRTFTSPEPIQFSCVAVDPSGELVCAGA 454 (893)
T ss_pred eeeecCCCceeeeEEEEcCCCCEEEeec
Confidence 23566666666666555 455666654
No 17
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.10 E-value=1.2e-10 Score=88.72 Aligned_cols=66 Identities=27% Similarity=0.450 Sum_probs=63.2
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-|.+.|.++.||| ...+|++||.|..|++||.++++|+.++..|...|..+.|+|++.+|++++.|
T Consensus 220 GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD 285 (464)
T KOG0284|consen 220 GHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKD 285 (464)
T ss_pred cCCCCcceeccCC-ccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCC
Confidence 4578899999999 88999999999999999999999999999999999999999999999999998
No 18
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.10 E-value=8.1e-10 Score=86.40 Aligned_cols=69 Identities=23% Similarity=0.355 Sum_probs=63.7
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
.|..-|+++.|+| ++++|++++.||.|.+||-.+++.+..+. +|.+.|.+++|+||++.|++++.| .|+
T Consensus 188 ~HskFV~~VRysP-DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWd 263 (603)
T KOG0318|consen 188 EHSKFVNCVRYSP-DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWD 263 (603)
T ss_pred ccccceeeEEECC-CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEE
Confidence 4566799999999 99999999999999999999999998887 789999999999999999999998 576
No 19
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=99.09 E-value=3.7e-10 Score=82.65 Aligned_cols=68 Identities=18% Similarity=0.276 Sum_probs=64.1
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
|.+.|+.+...+ +++++++++.|+++++||+.+++..+.|.+|...|.+++|+||.+.+++|+.| .|+
T Consensus 62 HsH~v~dv~~s~-dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwn 133 (315)
T KOG0279|consen 62 HSHFVSDVVLSS-DGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWN 133 (315)
T ss_pred cceEecceEEcc-CCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeee
Confidence 466799999999 99999999999999999999999999999999999999999999999999999 576
No 20
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=2.8e-10 Score=86.39 Aligned_cols=65 Identities=22% Similarity=0.463 Sum_probs=62.0
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|+.+|+.|+|+. |.++|++|+.|.++++||+++.+....+++|.+.|.++.|+|||..+++|..|
T Consensus 408 Hv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 408 HVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKD 472 (480)
T ss_pred ccceeEEEEecc-CccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCc
Confidence 577899999999 99999999999999999999999888999999999999999999999999888
No 21
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.08 E-value=3.1e-10 Score=82.39 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=66.0
Q ss_pred CCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe-cCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 10 DGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL-PRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 10 ~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~-~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
++......|++.+++| +.+.|++|+.|+.++.||+.++..+..+ ++|.++|.++.|+|||++.|+||.| .|+.+
T Consensus 219 Ks~k~P~nV~SASL~P-~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 219 KSYKMPCNVESASLHP-KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred eeccCccccccccccC-CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEec
Confidence 4455567789999999 8899999999999999999999988876 7999999999999999999999999 58755
No 22
>PTZ00421 coronin; Provisional
Probab=99.08 E-value=2.4e-09 Score=84.59 Aligned_cols=70 Identities=20% Similarity=0.424 Sum_probs=59.1
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Cc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TY 81 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~ 81 (114)
|..+|++|+|+|.++++|++|+.||+|++||+.++ ..+..+.+|...|.+++|+|++ .+||+++.| .|
T Consensus 74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 46789999999955689999999999999999764 2456778899999999999986 689999888 57
Q ss_pred cc
Q 033677 82 QE 83 (114)
Q Consensus 82 ~~ 83 (114)
+.
T Consensus 154 Dl 155 (493)
T PTZ00421 154 DV 155 (493)
T ss_pred EC
Confidence 63
No 23
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=99.05 E-value=7.8e-10 Score=81.49 Aligned_cols=67 Identities=22% Similarity=0.395 Sum_probs=58.1
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC--CCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR--FSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~--~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
...||+|+|.| ++.-|++|++|+++++||++..+.+..+.. ...+|++++||..|++|.+|..| .|+
T Consensus 229 esDINsv~ffP-~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWD 301 (343)
T KOG0286|consen 229 ESDINSVRFFP-SGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWD 301 (343)
T ss_pred ccccceEEEcc-CCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEee
Confidence 34599999999 999999999999999999999877776653 35689999999999999998777 576
No 24
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.04 E-value=8.6e-10 Score=85.26 Aligned_cols=88 Identities=18% Similarity=0.276 Sum_probs=69.1
Q ss_pred CeecCeEEEEECC--------CCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----C
Q 033677 13 HHLVPVNDVVFSP--------LSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----T 80 (114)
Q Consensus 13 ~~~~~V~~v~f~p--------~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~ 80 (114)
.|...|..+.|+| ..+.++++++.|++|++||+..+.++..|-+|..||.+++|||+|+++|+|+.| .
T Consensus 399 ~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~i 478 (524)
T KOG0273|consen 399 AHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHI 478 (524)
T ss_pred hhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEe
Confidence 4555677777665 224589999999999999999999999999999999999999999999999998 4
Q ss_pred cc--cc---cccCCCCcEEEEEcCc
Q 033677 81 YQ--EA---TVIEEPPQIFIIRIDD 100 (114)
Q Consensus 81 ~~--~~---~~~~~~~~i~i~~~~~ 100 (114)
|. .+ ++.++...||--.-+.
T Consensus 479 ws~~~~~l~~s~~~~~~Ifel~Wn~ 503 (524)
T KOG0273|consen 479 WSTKTGKLVKSYQGTGGIFELCWNA 503 (524)
T ss_pred ccccchheeEeecCCCeEEEEEEcC
Confidence 65 22 3456666655444433
No 25
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.04 E-value=1e-09 Score=88.75 Aligned_cols=67 Identities=18% Similarity=0.354 Sum_probs=58.4
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
.|..=|++|+|+|.|.++|++|+-||.|++|++...+.+. +.+...-|++++|+|||++.++|+-+.
T Consensus 407 ~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G 473 (712)
T KOG0283|consen 407 SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD-WNDLRDLITAVCYSPDGKGAVIGTFNG 473 (712)
T ss_pred ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe-ehhhhhhheeEEeccCCceEEEEEecc
Confidence 4566699999999777999999999999999999887655 556678999999999999999999773
No 26
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.02 E-value=1.5e-09 Score=82.16 Aligned_cols=85 Identities=13% Similarity=0.281 Sum_probs=66.5
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC---CeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Ccccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS---RRRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TYQEA 84 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~---~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~~~~ 84 (114)
.|..-||.|+|+. .-.+|++|++||++++||+++ ++.+..|+.|..+|++|.|+|.. ..||+++.| .|+..
T Consensus 300 Ah~sDVNVISWnr-~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 300 AHNSDVNVISWNR-REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred ccCCceeeEEccC-CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 5566799999998 666999999999999999986 45677888999999999999954 567777777 57633
Q ss_pred ---c--c-------c---CCCCcEEEEEc
Q 033677 85 ---T--V-------I---EEPPQIFIIRI 98 (114)
Q Consensus 85 ---~--~-------~---~~~~~i~i~~~ 98 (114)
+ | . .+|+-+|+|--
T Consensus 379 vE~D~ee~~~~a~~~L~dlPpQLLFVHqG 407 (440)
T KOG0302|consen 379 VEADEEEIDQEAAEGLQDLPPQLLFVHQG 407 (440)
T ss_pred ccCChhhhccccccchhcCCceeEEEecc
Confidence 1 1 0 55667888843
No 27
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.01 E-value=5.5e-10 Score=87.60 Aligned_cols=64 Identities=14% Similarity=0.328 Sum_probs=58.8
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
.+|+..+|+| |+.+|++.+.||.++++|+.+.+.+-.++...+.+.+++|||||+|+++|..||
T Consensus 291 g~in~f~FS~-DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDD 354 (636)
T KOG2394|consen 291 GSINEFAFSP-DGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDD 354 (636)
T ss_pred ccccceeEcC-CCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEecCCcc
Confidence 3689999999 999999999999999999999887777777788899999999999999999994
No 28
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.01 E-value=1e-09 Score=85.88 Aligned_cols=95 Identities=16% Similarity=0.269 Sum_probs=68.4
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEec-----CCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELP-----RFSNSVASLSYNHGGQLLAVASSC----TYQE 83 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~-----~~~~~v~~v~fspdg~~la~~s~d----~~~~ 83 (114)
|+..+++.+|+|++.+.|+|++.||++++||+.+.+.- ..++ +..-++++++|+|||.+||+|+.| .|+.
T Consensus 267 Hia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~ 346 (641)
T KOG0772|consen 267 HIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDK 346 (641)
T ss_pred ceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeec
Confidence 47789999999955689999999999999999875322 2221 335689999999999999999988 6887
Q ss_pred ccccCCCCcEEEEEcCcccccceeee
Q 033677 84 ATVIEEPPQIFIIRIDDIQQQSACVG 109 (114)
Q Consensus 84 ~~~~~~~~~i~i~~~~~~~~~~~~~~ 109 (114)
+.... .+.++++..........|+.
T Consensus 347 ~~~~v-~p~~~vk~AH~~g~~Itsi~ 371 (641)
T KOG0772|consen 347 GSRTV-RPVMKVKDAHLPGQDITSIS 371 (641)
T ss_pred CCccc-ccceEeeeccCCCCceeEEE
Confidence 65432 23455555544433344554
No 29
>PTZ00420 coronin; Provisional
Probab=99.00 E-value=7.8e-09 Score=82.85 Aligned_cols=64 Identities=20% Similarity=0.442 Sum_probs=55.3
Q ss_pred eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...|++|+|+| ++. +|++++.|+.|++||+++++.+..+. +...|.+++|+|+|.+||+++.|
T Consensus 124 H~~~V~sVaf~P-~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D 188 (568)
T PTZ00420 124 HKKKISIIDWNP-MNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG 188 (568)
T ss_pred CCCcEEEEEECC-CCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC
Confidence 456799999999 775 56799999999999999988776664 56789999999999999998877
No 30
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.00 E-value=5e-09 Score=76.58 Aligned_cols=66 Identities=21% Similarity=0.326 Sum_probs=59.8
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC--CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS--RRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~--~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|...|..|+|.| .+++|++||-|+++.+|.-.. .+++..+.+|...|.+++||++|++||+++.|
T Consensus 59 ~hkrsVRsvAwsp-~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD 126 (312)
T KOG0645|consen 59 GHKRSVRSVAWSP-HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRD 126 (312)
T ss_pred cchheeeeeeecC-CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC
Confidence 4566799999999 999999999999999997654 37888889999999999999999999999999
No 31
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.99 E-value=7.4e-10 Score=82.53 Aligned_cols=64 Identities=20% Similarity=0.236 Sum_probs=59.9
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
.+++.|++ -+..|+.|..||.|.+||+.+....+.+.+|-.||++++||+||+.|.++|.| .|+
T Consensus 26 a~~~~Fs~-~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD 93 (405)
T KOG1273|consen 26 AECCQFSR-WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD 93 (405)
T ss_pred cceEEecc-CcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence 78999999 99999999999999999999998888888999999999999999999999988 565
No 32
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.98 E-value=1.1e-09 Score=88.45 Aligned_cols=79 Identities=23% Similarity=0.348 Sum_probs=69.7
Q ss_pred eeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----
Q 033677 4 CHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC---- 79 (114)
Q Consensus 4 ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d---- 79 (114)
||++.. +|-..|.+|.|.| ...+|.++|.|+.|+.||.+..+.+..+.+|...|.+++.+|+|.++++++.|
T Consensus 584 CHKS~f---AHdDSvm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIR 659 (888)
T KOG0306|consen 584 CHKSFF---AHDDSVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIR 659 (888)
T ss_pred hhhhhh---cccCceeEEEEcc-cceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeE
Confidence 888521 3345699999999 88899999999999999999999999999999999999999999999999998
Q ss_pred Ccccccc
Q 033677 80 TYQEATV 86 (114)
Q Consensus 80 ~~~~~~~ 86 (114)
.|++++|
T Consensus 660 lwE~tde 666 (888)
T KOG0306|consen 660 LWERTDE 666 (888)
T ss_pred eeeccCc
Confidence 7887764
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.98 E-value=1.1e-08 Score=70.96 Aligned_cols=65 Identities=29% Similarity=0.420 Sum_probs=58.6
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|..+|++++|+| +++.|++++.||.|.+||+.+++....+..+...+..+.|+|++++|++++.+
T Consensus 8 h~~~i~~~~~~~-~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 72 (289)
T cd00200 8 HTGGVTCVAFSP-DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD 72 (289)
T ss_pred cCCCEEEEEEcC-CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCC
Confidence 356799999999 89999999999999999999888777788888899999999999999988876
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.96 E-value=2.5e-10 Score=85.53 Aligned_cols=64 Identities=19% Similarity=0.291 Sum_probs=59.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-.+|.+++|+. +.+++++|+.||.|++|.++++.|++.|. .|...|+++.||.|+..+.+++.|
T Consensus 263 d~aVlci~FSR-DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD 327 (508)
T KOG0275|consen 263 DDAVLCISFSR-DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFD 327 (508)
T ss_pred ccceEEEeecc-cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhccccc
Confidence 45799999999 99999999999999999999999999997 889999999999999999888877
No 35
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=98.94 E-value=2.6e-09 Score=81.82 Aligned_cols=73 Identities=22% Similarity=0.348 Sum_probs=60.6
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC--CCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCC----Cccccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ--SRRRLFELPRFSNSVASLSYNHG-GQLLAVASSC----TYQEAT 85 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~--~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d----~~~~~~ 85 (114)
.|...|++++|+|+...+|+++++|+.+.+||+| +.+.....++|..+|++++|+|- +.+||+|+.| .|+.-+
T Consensus 225 ~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRn 304 (422)
T KOG0264|consen 225 GHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRN 304 (422)
T ss_pred cCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechh
Confidence 3567799999999666899999999999999999 45555666789999999999995 5689999988 566443
No 36
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.92 E-value=3.9e-09 Score=85.03 Aligned_cols=69 Identities=26% Similarity=0.359 Sum_probs=64.1
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
.|-..||+|+++| +..+|+|||.|.+.++|++.+...+..+.+|...|.+|.|+|..++||++|+| .|.
T Consensus 461 aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~ 533 (775)
T KOG0319|consen 461 AHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWS 533 (775)
T ss_pred hhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEE
Confidence 4566799999999 88999999999999999999989889999999999999999999999999999 465
No 37
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.92 E-value=1.1e-08 Score=77.18 Aligned_cols=66 Identities=27% Similarity=0.398 Sum_probs=62.1
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|..+|.+|+.+| +.++++|||.|-.-.+|++.++..+..+.+|..+|+++.||.||.+||+|.-+
T Consensus 62 ~H~~svFavsl~P-~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdms 127 (399)
T KOG0296|consen 62 KHTDSVFAVSLHP-NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMS 127 (399)
T ss_pred hcCCceEEEEeCC-CCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCC
Confidence 5678899999999 99999999999999999999999999999999999999999999999998765
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.91 E-value=3e-09 Score=76.77 Aligned_cols=68 Identities=18% Similarity=0.258 Sum_probs=63.9
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
|.+.|.+++... ++..|++|+.|..+.+||+.+++.++.+.+|..+|++++|+.+...+++|+-| .|+
T Consensus 58 hG~EVlD~~~s~-Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wD 129 (307)
T KOG0316|consen 58 HGHEVLDAALSS-DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWD 129 (307)
T ss_pred CCceeeeccccc-cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEE
Confidence 477899999998 88999999999999999999999999999999999999999999999999988 587
No 39
>PTZ00420 coronin; Provisional
Probab=98.91 E-value=1.1e-08 Score=81.92 Aligned_cols=70 Identities=11% Similarity=0.237 Sum_probs=56.2
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--------eeEEecCCCCCeEEEEECCCCCE-EEEEeCC----C
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--------RLFELPRFSNSVASLSYNHGGQL-LAVASSC----T 80 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--------~~~~~~~~~~~v~~v~fspdg~~-la~~s~d----~ 80 (114)
|..+|++|+|+|.++++|++|+.||.|++||+.++. .+..+.+|...|.+++|+|++.. ||+++.| .
T Consensus 73 H~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 73 HTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred CCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEE
Confidence 467899999999336899999999999999997642 23356788999999999999875 5677777 5
Q ss_pred ccc
Q 033677 81 YQE 83 (114)
Q Consensus 81 ~~~ 83 (114)
|+.
T Consensus 153 WDl 155 (568)
T PTZ00420 153 WDI 155 (568)
T ss_pred EEC
Confidence 763
No 40
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.90 E-value=1.1e-08 Score=83.46 Aligned_cols=64 Identities=22% Similarity=0.379 Sum_probs=57.8
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...|++++|+| ++..|++++.|++|++||+-++.++-.+ ..+.++++++|||+|.+||++..|
T Consensus 575 h~nritd~~FS~-DgrWlisasmD~tIr~wDlpt~~lID~~-~vd~~~~sls~SPngD~LAT~Hvd 638 (910)
T KOG1539|consen 575 HGNRITDMTFSP-DGRWLISASMDSTIRTWDLPTGTLIDGL-LVDSPCTSLSFSPNGDFLATVHVD 638 (910)
T ss_pred cccceeeeEeCC-CCcEEEEeecCCcEEEEeccCcceeeeE-ecCCcceeeEECCCCCEEEEEEec
Confidence 456699999999 9999999999999999999999877655 467889999999999999999887
No 41
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=98.89 E-value=2e-09 Score=82.07 Aligned_cols=69 Identities=25% Similarity=0.427 Sum_probs=62.6
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
+|.-.|.+++|+| +...|+++++||+|++||....+....+.+|...|.++.|.|.-.++|+|+.| .|+
T Consensus 178 hh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 178 HHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 4456799999999 88899999999999999999988888889999999999999999999999998 566
No 42
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.89 E-value=4.4e-09 Score=78.46 Aligned_cols=83 Identities=17% Similarity=0.396 Sum_probs=72.4
Q ss_pred CceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCC-CCeEEEEECCCCCEEEEEeC
Q 033677 1 MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFS-NSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 1 ~~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~-~~v~~v~fspdg~~la~~s~ 78 (114)
|+.|.-+.+-+.+|...|++|.+++ .+++.+||+.||.|++||--+++|+.++. .|+ ..|.+..|..+|+++.+++.
T Consensus 247 T~QcfvsanPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~ 325 (430)
T KOG0640|consen 247 TYQCFVSANPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK 325 (430)
T ss_pred ceeEeeecCcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC
Confidence 4667777777888999999999999 99999999999999999999999998885 554 47999999999999998888
Q ss_pred C----Ccccc
Q 033677 79 C----TYQEA 84 (114)
Q Consensus 79 d----~~~~~ 84 (114)
| .|+.+
T Consensus 326 DS~vkLWEi~ 335 (430)
T KOG0640|consen 326 DSTVKLWEIS 335 (430)
T ss_pred cceeeeeeec
Confidence 7 68733
No 43
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=98.89 E-value=1.3e-08 Score=78.83 Aligned_cols=100 Identities=12% Similarity=0.234 Sum_probs=78.8
Q ss_pred CCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc--
Q 033677 10 DGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE-- 83 (114)
Q Consensus 10 ~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~-- 83 (114)
++......|++|+|+. ++.+|++|+.||.+++|+.. +..+..+..|.+||.+++|+..|.+|++++.| .|+-
T Consensus 230 ~s~~~nkdVT~L~Wn~-~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~ 307 (524)
T KOG0273|consen 230 KSVPSNKDVTSLDWNN-DGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT 307 (524)
T ss_pred ccCCccCCcceEEecC-CCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccC
Confidence 4444566799999999 99999999999999999976 55677888999999999999999999999988 5662
Q ss_pred c---------------------ccc---CCCCcEEEEEcCcccccceeeecC
Q 033677 84 A---------------------TVI---EEPPQIFIIRIDDIQQQSACVGSS 111 (114)
Q Consensus 84 ~---------------------~~~---~~~~~i~i~~~~~~~~~~~~~~~~ 111 (114)
| +++ .....||+-.+-...|...=.||.
T Consensus 308 g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~ 359 (524)
T KOG0273|consen 308 GTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHH 359 (524)
T ss_pred ceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeeccc
Confidence 2 111 455568888887776666655553
No 44
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=98.89 E-value=1.2e-08 Score=79.97 Aligned_cols=66 Identities=21% Similarity=0.338 Sum_probs=58.5
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|..+|++|+|+| ++.+|+++...+.+.+||+.+++.. ..+.-|...|.+++|||+.+++|+|+-|
T Consensus 485 ~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 485 EHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred cccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence 5678999999999 9999999999999999999987652 2334588899999999999999999999
No 45
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.88 E-value=3e-09 Score=81.49 Aligned_cols=68 Identities=19% Similarity=0.321 Sum_probs=60.8
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
|..||..|.|+| |.+.+++++.|..+.+||+.++.+...+. ++...+++++|.|||..|++|+.| +|+
T Consensus 268 h~~~V~yi~wSP-DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wd 340 (519)
T KOG0293|consen 268 HSQPVSYIMWSP-DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWD 340 (519)
T ss_pred ccCceEEEEECC-CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEec
Confidence 477899999999 99999999999999999999998887775 446889999999999999999998 566
No 46
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.88 E-value=1.6e-09 Score=86.70 Aligned_cols=68 Identities=13% Similarity=0.304 Sum_probs=62.7
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
.|.-.|+.|.|||+-.+.|++++.|.+|++||+++++....+.+|.+.|..++|||||+.+|+.+.|.
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg 742 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDG 742 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCc
Confidence 45677999999996678999999999999999999998888999999999999999999999999983
No 47
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.87 E-value=2.2e-08 Score=70.22 Aligned_cols=61 Identities=20% Similarity=0.460 Sum_probs=50.4
Q ss_pred cCeEEEEECCCCCCEEEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.+++.|.|+| ++++|++++. .|.|.+||.++.+.+.... + ..++.++|||||++|++++..
T Consensus 101 ~~~n~i~wsP-~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~ 164 (194)
T PF08662_consen 101 QPRNTISWSP-DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTS 164 (194)
T ss_pred CCceEEEECC-CCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEec
Confidence 4688999999 9999998874 4679999999888776654 3 347899999999999988764
No 48
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=98.87 E-value=6.3e-09 Score=77.78 Aligned_cols=67 Identities=16% Similarity=0.264 Sum_probs=60.9
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|...|+.|.|+|...++++++|.|-.|++|++++..|+..+- +|.+.|.++.|+++|.++|+++-|
T Consensus 133 ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmD 202 (385)
T KOG1034|consen 133 GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMD 202 (385)
T ss_pred ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCc
Confidence 5678899999999556899999999999999999999988764 789999999999999999999888
No 49
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=98.87 E-value=9.4e-09 Score=77.95 Aligned_cols=84 Identities=23% Similarity=0.355 Sum_probs=63.1
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc-c
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA-T 85 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~-~ 85 (114)
|...|.+|+|+|....+|++||.||+|++||+|.+ .++. .+.|..-|+.|+|+..-.+||+|..| .|+.- .
T Consensus 256 H~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~ 334 (440)
T KOG0302|consen 256 HTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQF 334 (440)
T ss_pred cccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCceeeEEccCCcceeeecCCCceEEEEEhhhc
Confidence 56778899999944589999999999999999987 4443 37899999999999987789988877 35422 2
Q ss_pred ccCCCCcEEEEEc
Q 033677 86 VIEEPPQIFIIRI 98 (114)
Q Consensus 86 ~~~~~~~i~i~~~ 98 (114)
....|.+-|-++.
T Consensus 335 ~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 335 KSGQPVATFKYHK 347 (440)
T ss_pred cCCCcceeEEecc
Confidence 2234444554444
No 50
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.87 E-value=5.3e-09 Score=84.73 Aligned_cols=70 Identities=23% Similarity=0.382 Sum_probs=62.0
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccccc
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEAT 85 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~ 85 (114)
-.|.+|.|+|..++.|+++.+.|.+++||++. .++.+++..|.++|.++.|+|++.+||+|+.| .|+.+.
T Consensus 177 ESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~ 251 (839)
T KOG0269|consen 177 ESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD 251 (839)
T ss_pred hhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence 35789999997779999999999999999986 46677788999999999999999999999999 688663
No 51
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.86 E-value=8.3e-09 Score=78.03 Aligned_cols=66 Identities=27% Similarity=0.464 Sum_probs=61.1
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
|..+|..|.+.| .+..+++|+.|++|++||++.++.+..+..|...|.+++.+|....||+++.|+
T Consensus 276 H~~~V~~V~~~~-~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn 341 (460)
T KOG0285|consen 276 HTNPVASVMCQP-TDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN 341 (460)
T ss_pred CCCcceeEEeec-CCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc
Confidence 466799999999 777899999999999999999999999999999999999999999999999994
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1.5e-08 Score=74.19 Aligned_cols=64 Identities=23% Similarity=0.227 Sum_probs=53.5
Q ss_pred ecCeEEEEECCCC-CCEEEEEeCCCcEEEEeCCCC---eeeEEe-cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLS-RGAFVTGDNEGYVAAWDAQSR---RRLFEL-PRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~-~~~~~t~s~Dg~I~iwD~~~~---~~~~~~-~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...+..++||| - +..|++||.|..|++|+...+ .+...+ .+|...|.+++|+|.|++||+||-|
T Consensus 14 ~~r~W~~awhp-~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD 82 (312)
T KOG0645|consen 14 KDRVWSVAWHP-GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFD 82 (312)
T ss_pred CCcEEEEEecc-CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeecc
Confidence 44699999999 5 678999999999999999842 333223 2688999999999999999999988
No 53
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.84 E-value=9.5e-09 Score=82.84 Aligned_cols=67 Identities=19% Similarity=0.202 Sum_probs=62.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
.-.|.+|.|+| ..+.++|+|.|++|++|.+.+..|++++.+|...|..+.|-.+|+.|.++++| .|+
T Consensus 505 ~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWn 575 (775)
T KOG0319|consen 505 TRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWN 575 (775)
T ss_pred ccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEe
Confidence 34599999999 88899999999999999999999999999999999999999999999999988 576
No 54
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.84 E-value=2.1e-08 Score=75.74 Aligned_cols=72 Identities=21% Similarity=0.410 Sum_probs=62.1
Q ss_pred CeecCeEEEEECCCC---------C-----CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 13 HHLVPVNDVVFSPLS---------R-----GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~---------~-----~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
.|.+||.+++|-|.. + +.+.+++.|++|++||+.++.++.++.+|..-|..++|+|-|+||+++..
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaD 354 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCAD 354 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEec
Confidence 567788899887621 1 47889999999999999999999999999999999999999999999988
Q ss_pred C----Ccccc
Q 033677 79 C----TYQEA 84 (114)
Q Consensus 79 d----~~~~~ 84 (114)
| .|+.-
T Consensus 355 Dktlrvwdl~ 364 (406)
T KOG0295|consen 355 DKTLRVWDLK 364 (406)
T ss_pred CCcEEEEEec
Confidence 7 57633
No 55
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=98.84 E-value=1.2e-08 Score=77.08 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=63.7
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE 83 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~ 83 (114)
-|++.|.+|+.+| .-..|++|+.|.++++||++++..+..+.+|..+|..+.+.|-.-.+.+|+-| .|++
T Consensus 233 GHlS~V~~L~lhP-Tldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl 306 (460)
T KOG0285|consen 233 GHLSGVYCLDLHP-TLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL 306 (460)
T ss_pred cccceeEEEeccc-cceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence 4688999999999 88999999999999999999999999999999999999999866678889988 5773
No 56
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=98.83 E-value=4.4e-08 Score=67.82 Aligned_cols=65 Identities=32% Similarity=0.505 Sum_probs=58.1
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+..+|.+++|+| ++.++++++.||.|++||+.++.....+..+...|.+++|+|++.+|++++.|
T Consensus 218 ~~~~i~~~~~~~-~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 282 (289)
T cd00200 218 HENGVNSVAFSP-DGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSAD 282 (289)
T ss_pred cCCceEEEEEcC-CCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCC
Confidence 345799999999 88888888889999999999888888888888899999999999999998877
No 57
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.83 E-value=2e-08 Score=81.47 Aligned_cols=65 Identities=29% Similarity=0.412 Sum_probs=56.0
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|..||.+++|+| .++.|+++|.|.+|++||+-.......-..+...+++++|+|||+.||+++.|
T Consensus 477 HEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTld 541 (893)
T KOG0291|consen 477 HEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLD 541 (893)
T ss_pred CCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEec
Confidence 478999999999 99999999999999999997653333333567789999999999999999988
No 58
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.82 E-value=1.6e-08 Score=77.27 Aligned_cols=64 Identities=27% Similarity=0.333 Sum_probs=56.1
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC--CeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN--SVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~--~v~~v~fspdg~~la~~s~d 79 (114)
.+..+.+.|+| ++.++++||.||.|++|++.++++.+.+..... .|++++|+|.|..|++++.+
T Consensus 387 asDwtrvvfSp-d~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~ 452 (459)
T KOG0288|consen 387 ASDWTRVVFSP-DGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQ 452 (459)
T ss_pred ccccceeEECC-CCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCC
Confidence 44578999999 999999999999999999999998888775544 59999999999999888765
No 59
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.82 E-value=3.3e-08 Score=71.87 Aligned_cols=65 Identities=20% Similarity=0.245 Sum_probs=57.8
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|..-+..+.++| ++.+|+++|.|.++++|+.++. +....+++|..-+..++||.||+||++|+.|
T Consensus 214 h~~~il~C~lSP-d~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd 279 (311)
T KOG0315|consen 214 HNGHILRCLLSP-DVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSD 279 (311)
T ss_pred ccceEEEEEECC-CCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCC
Confidence 444488899999 9999999999999999999987 5455677888899999999999999999999
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=4.1e-08 Score=72.68 Aligned_cols=62 Identities=19% Similarity=0.303 Sum_probs=52.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...|+.|+.+| .++.|++++.|++|++||++..++...+.....+ .++|.|.|-++|++...
T Consensus 100 ~~~V~sL~~sP-~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~ 161 (311)
T KOG1446|consen 100 KKRVNSLSVSP-KDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGS 161 (311)
T ss_pred CceEEEEEecC-CCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCC
Confidence 45699999999 8899999999999999999988877666544444 48999999999998876
No 61
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.82 E-value=1.3e-08 Score=75.37 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=57.1
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eee-EEecCCCCCeEEEEECCCCCEEEEEeCC----Cccccc
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRL-FELPRFSNSVASLSYNHGGQLLAVASSC----TYQEAT 85 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~-~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~ 85 (114)
..|.+|+|+|+...+|+++|.||+|++|+++.. ... +....+.+||.+++|+.||..+++|+.| .|+...
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence 458899999954578889999999999999873 322 3445789999999999999999999988 677554
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.81 E-value=1e-08 Score=84.98 Aligned_cols=63 Identities=25% Similarity=0.303 Sum_probs=60.0
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..|.+|+|+| ++.+|++++.|++|.+|+.++.+.+..+.+|...|..++|.|-|++||+-+.|
T Consensus 130 ~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdD 192 (942)
T KOG0973|consen 130 SDVLDVNWSP-DDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDD 192 (942)
T ss_pred CccceeccCC-CccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCC
Confidence 3488999999 99999999999999999999999999999999999999999999999999988
No 63
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.80 E-value=6.3e-08 Score=73.18 Aligned_cols=65 Identities=28% Similarity=0.472 Sum_probs=54.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCC-cEEEEeCCCCeeeEEecCC--CCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEG-YVAAWDAQSRRRLFELPRF--SNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg-~I~iwD~~~~~~~~~~~~~--~~~v~~v~fspdg~~la~~s~d 79 (114)
|-.++-+++|+| +|.+|+|+|+.| .|+++.+.+++.+++|..- ...|-+++|+||+.+|++.+..
T Consensus 172 H~~~lAalafs~-~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 172 HKGPLAALAFSP-DGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred cCCceeEEEECC-CCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence 445688999999 999999999999 5678999999999999743 4567799999999988876643
No 64
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=1.1e-08 Score=82.85 Aligned_cols=63 Identities=14% Similarity=0.256 Sum_probs=57.2
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d 79 (114)
|+..|.+|+|+. +++|++++.|.+|++|++....|++.| .|.+-||+|+|+| |.++|++|+-|
T Consensus 368 Ht~DILDlSWSK--n~fLLSSSMDKTVRLWh~~~~~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD 431 (712)
T KOG0283|consen 368 HTADILDLSWSK--NNFLLSSSMDKTVRLWHPGRKECLKVF-SHNDFVTCVAFNPVDDRYFISGSLD 431 (712)
T ss_pred cchhheeccccc--CCeeEeccccccEEeecCCCcceeeEE-ecCCeeEEEEecccCCCcEeecccc
Confidence 567799999996 568999999999999999999999877 5889999999999 67899999998
No 65
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=98.78 E-value=3.5e-08 Score=71.73 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=57.7
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
..-|++|.|.- ++..++|||+||++++||++...+-+.+ .+..+|+++..+|+...|.+|..+ .|+.+
T Consensus 83 ~kNVtaVgF~~-dgrWMyTgseDgt~kIWdlR~~~~qR~~-~~~spVn~vvlhpnQteLis~dqsg~irvWDl~ 154 (311)
T KOG0315|consen 83 TKNVTAVGFQC-DGRWMYTGSEDGTVKIWDLRSLSCQRNY-QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLG 154 (311)
T ss_pred CCceEEEEEee-cCeEEEecCCCceEEEEeccCcccchhc-cCCCCcceEEecCCcceEEeecCCCcEEEEEcc
Confidence 56689999999 9999999999999999999996655555 567999999999988778777665 68766
No 66
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.77 E-value=5.7e-08 Score=71.89 Aligned_cols=69 Identities=16% Similarity=0.328 Sum_probs=61.5
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC-CCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ-SRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~-~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
.|...|+.+.|+| ++..|++||.|..|.+|+.. ..+....+++|.+.|..+.|.+|+..+.+++.| .|+
T Consensus 45 gh~geI~~~~F~P-~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 45 GHKGEIYTIKFHP-DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred CCcceEEEEEECC-CCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence 4577899999999 99999999999999999954 456677788999999999999999999999998 576
No 67
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.75 E-value=6.6e-08 Score=79.82 Aligned_cols=68 Identities=19% Similarity=0.345 Sum_probs=59.8
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC----Cccc
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC----TYQE 83 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d----~~~~ 83 (114)
.+|.+++|+|..+..|++++.||.|++||+.+++.+..+..|...|++++|+| ++.+|++|+.| .|+.
T Consensus 533 ~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~ 605 (793)
T PLN00181 533 SKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSI 605 (793)
T ss_pred CceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEEC
Confidence 46889999983468999999999999999999988888999999999999997 78999999988 4663
No 68
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=98.75 E-value=1e-07 Score=74.71 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=63.0
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEE
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIF 94 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~ 94 (114)
.+|+.++.|+| .+ .++.|...|...+.|.++...+ ++.....+++.++|+|+|.+||+|+.| +.||
T Consensus 407 ~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d~e~~~lv-~~~~d~~~ls~v~ysp~G~~lAvgs~d-----------~~iy 472 (626)
T KOG2106|consen 407 EDPAECADFHP-SG-VVAVGTATGRWFVLDTETQDLV-TIHTDNEQLSVVRYSPDGAFLAVGSHD-----------NHIY 472 (626)
T ss_pred cCceeEeeccC-cc-eEEEeeccceEEEEecccceeE-EEEecCCceEEEEEcCCCCEEEEecCC-----------CeEE
Confidence 45677888888 66 7788888888888888775433 333337899999999999999999988 8999
Q ss_pred EEEcCccc----ccceeee
Q 033677 95 IIRIDDIQ----QQSACVG 109 (114)
Q Consensus 95 i~~~~~~~----~~~~~~~ 109 (114)
|..+++.. +.++|.|
T Consensus 473 iy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 473 IYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred EEEECCCCcEEEEeeeecC
Confidence 99998863 4455766
No 69
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.75 E-value=3.8e-08 Score=75.56 Aligned_cols=76 Identities=13% Similarity=0.099 Sum_probs=63.3
Q ss_pred eeeeecCCC------CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---eEEecCCCCCeEEEEECCCCCEE
Q 033677 3 RCHPKSKDG------RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---LFELPRFSNSVASLSYNHGGQLL 73 (114)
Q Consensus 3 ~ch~~~~~~------~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---~~~~~~~~~~v~~v~fspdg~~l 73 (114)
.|||..... ..|...|.-+.|++ ++.+||+++.|.+..+|++..... .+++.+|..+|..+.||||.++|
T Consensus 206 ~c~~~qip~qt~qil~~htdEVWfl~FS~-nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryL 284 (519)
T KOG0293|consen 206 FCGRLQIPSQTWQILQDHTDEVWFLQFSH-NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYL 284 (519)
T ss_pred ccCcccCCchhhhhHhhCCCcEEEEEEcC-CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeE
Confidence 477774433 36788999999999 999999999999999999876543 56677999999999999999988
Q ss_pred EEEeCC
Q 033677 74 AVASSC 79 (114)
Q Consensus 74 a~~s~d 79 (114)
.+++.+
T Consensus 285 laCg~~ 290 (519)
T KOG0293|consen 285 LACGFD 290 (519)
T ss_pred EecCch
Confidence 877766
No 70
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=98.74 E-value=8.2e-08 Score=73.97 Aligned_cols=65 Identities=28% Similarity=0.436 Sum_probs=58.0
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-CCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-FSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-~~~~v~~v~fspdg~~la~~s~d 79 (114)
|..||..|+|+. +|-+|+++.+|+.|++||+|.-+..++++. ...++.++.|.+.|.+|++++.|
T Consensus 388 ht~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~ 453 (506)
T KOG0289|consen 388 HTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD 453 (506)
T ss_pred CCCceeEEEecc-CceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecce
Confidence 688999999999 999999999999999999998887777763 34479999999999999999876
No 71
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.74 E-value=6e-09 Score=84.00 Aligned_cols=66 Identities=20% Similarity=0.408 Sum_probs=61.7
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-|..||.+|.|++ ...+|++|+.+|+|++||++.++.++.+.+|...+.++.|+|-|.++|.|+.|
T Consensus 68 ~hespIeSl~f~~-~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStd 133 (825)
T KOG0267|consen 68 GHESPIESLTFDT-SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTD 133 (825)
T ss_pred ccCCcceeeecCc-chhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEecccccc
Confidence 4567899999999 88999999999999999999999999999999999999999999999999988
No 72
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=5.3e-08 Score=70.90 Aligned_cols=67 Identities=16% Similarity=0.343 Sum_probs=56.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-GQLLAVASSCT 80 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d~ 80 (114)
|.+.|....|+|+.+++|+++|.||.+++||++..-....+..|..+|.++.|+.- ..+||+|+.|.
T Consensus 146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~ 213 (311)
T KOG0277|consen 146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDN 213 (311)
T ss_pred CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCc
Confidence 46679999999977899999999999999999875444448889999999999984 46888888883
No 73
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.73 E-value=2.2e-07 Score=69.23 Aligned_cols=65 Identities=20% Similarity=0.266 Sum_probs=56.5
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCc-EEEEeCCCCeeeEEecC--CCCCeEEEEECCCCCEEEEEeC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGY-VAAWDAQSRRRLFELPR--FSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~-I~iwD~~~~~~~~~~~~--~~~~v~~v~fspdg~~la~~s~ 78 (114)
+|-.+|.+++++- ++.++||+|..|+ |++||..+++.+.++.. ....|-+|+|||++.+||++|.
T Consensus 179 AH~s~Iacv~Ln~-~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSd 246 (346)
T KOG2111|consen 179 AHDSDIACVALNL-QGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSD 246 (346)
T ss_pred cccCceeEEEEcC-CccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcC
Confidence 4667799999998 9999999999994 67999999999998873 2457899999999999998774
No 74
>PLN00181 protein SPA1-RELATED; Provisional
Probab=98.73 E-value=2.5e-07 Score=76.47 Aligned_cols=65 Identities=17% Similarity=0.322 Sum_probs=55.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEEC-CCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYN-HGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fs-pdg~~la~~s~d 79 (114)
|..+|++|+|+|.++.+|++|+.||.|++||++++..+..+.. ...|.++.|+ ++|.+||+|+.|
T Consensus 574 H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~-~~~v~~v~~~~~~g~~latgs~d 639 (793)
T PLN00181 574 HEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT-KANICCVQFPSESGRSLAFGSAD 639 (793)
T ss_pred CCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec-CCCeEEEEEeCCCCCEEEEEeCC
Confidence 5677999999973568999999999999999999888877764 4678999994 579999999988
No 75
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.71 E-value=5.6e-09 Score=80.85 Aligned_cols=69 Identities=23% Similarity=0.360 Sum_probs=63.2
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
|...|++|.|.|..+.+|++++.|+.|++|++.. +.+++++.+|..+|.+++|+++|..|.+++-| .|+
T Consensus 213 H~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwD 286 (503)
T KOG0282|consen 213 HTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWD 286 (503)
T ss_pred CccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeec
Confidence 4677999999996678999999999999999987 89999999999999999999999999999988 566
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=98.70 E-value=1.1e-07 Score=79.09 Aligned_cols=66 Identities=23% Similarity=0.331 Sum_probs=58.6
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC------------------CeeeEEecCCCCCeEEEEECCCCCEEE
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS------------------RRRLFELPRFSNSVASLSYNHGGQLLA 74 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~------------------~~~~~~~~~~~~~v~~v~fspdg~~la 74 (114)
.|..+|+++.|+| ++.+||+|++|+.|.+|+... .++...+.+|+..|..++|+|++.+||
T Consensus 67 ~h~~sv~CVR~S~-dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv 145 (942)
T KOG0973|consen 67 DHDGSVNCVRFSP-DGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV 145 (942)
T ss_pred cccCceeEEEECC-CCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence 4678899999999 999999999999999999872 135566778999999999999999999
Q ss_pred EEeCC
Q 033677 75 VASSC 79 (114)
Q Consensus 75 ~~s~d 79 (114)
+++-|
T Consensus 146 S~s~D 150 (942)
T KOG0973|consen 146 SVSLD 150 (942)
T ss_pred Eeccc
Confidence 99988
No 77
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1e-07 Score=74.95 Aligned_cols=66 Identities=24% Similarity=0.407 Sum_probs=58.9
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d 79 (114)
.|.-.|-.+.|++ ++.+|++|+.|+.+.+||......+..+..|...|.+++|+| ...+||+|.+-
T Consensus 299 ~H~qeVCgLkws~-d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs 365 (484)
T KOG0305|consen 299 GHRQEVCGLKWSP-DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGS 365 (484)
T ss_pred cccceeeeeEECC-CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCC
Confidence 3566788999999 999999999999999999988888888999999999999999 45699997763
No 78
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=98.69 E-value=2e-08 Score=73.44 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=58.2
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|+.+.+-| |+..|+|+|.|+.|++|.-++.+.+..++.|...|++++|+|+..+||+++.|
T Consensus 253 Gv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD 314 (323)
T KOG0322|consen 253 GVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKD 314 (323)
T ss_pred CccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCC
Confidence 467889999 99999999999999999999999888888999999999999999999999998
No 79
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.67 E-value=1e-07 Score=72.06 Aligned_cols=65 Identities=20% Similarity=0.286 Sum_probs=60.7
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...|.+++|+| -|++|+++.+|+++++||+++++|++.+..|..-|+++.|..+.-++.+|+-|
T Consensus 333 hdnwVr~~af~p-~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVd 397 (406)
T KOG0295|consen 333 HDNWVRGVAFSP-GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVD 397 (406)
T ss_pred ccceeeeeEEcC-CCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEecccc
Confidence 356799999999 89999999999999999999999999999999999999999988899999877
No 80
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=98.67 E-value=3e-07 Score=67.24 Aligned_cols=67 Identities=16% Similarity=0.358 Sum_probs=55.8
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
-|...|..++|+|....+|++++.|..|++||++.+++........+. ..++|+|+|++++++..|+
T Consensus 62 gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD 128 (313)
T KOG1407|consen 62 GHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGEN-INITWSPDGEYIAVGNKDD 128 (313)
T ss_pred CCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcc
Confidence 446678899999955689999999999999999999998877644443 4689999999999999873
No 81
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=98.66 E-value=3e-08 Score=77.75 Aligned_cols=67 Identities=19% Similarity=0.311 Sum_probs=54.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe---eeEEecCCCC--CeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR---RLFELPRFSN--SVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~---~~~~~~~~~~--~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
.-+++.++|+| ++.+|++|..||.|.+||..+.. ..+.-+.|.. .|++|+||+||++|++=+.| .|+
T Consensus 317 Rv~~tsC~~nr-dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWD 392 (641)
T KOG0772|consen 317 RVPVTSCAWNR-DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWD 392 (641)
T ss_pred ccCceeeecCC-CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeee
Confidence 45788999999 99999999999999999986542 2223346655 89999999999999997777 577
No 82
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=1.3e-07 Score=68.97 Aligned_cols=84 Identities=17% Similarity=0.203 Sum_probs=65.9
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC----CcccccccC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC----TYQEATVIE 88 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d----~~~~~~~~~ 88 (114)
|.-.|.+|.|++.....|+++|.|++|++||..-.+.+.++.+|..-|-..+||| .+.+||++|+| .|+ ..+..
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwd-vr~~g 181 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWD-VRSPG 181 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEE-ecCCC
Confidence 3456899999994457789999999999999998999999999999999999999 56899999999 466 33332
Q ss_pred CCCcEEEEEc
Q 033677 89 EPPQIFIIRI 98 (114)
Q Consensus 89 ~~~~i~i~~~ 98 (114)
.+..|-+|..
T Consensus 182 k~~~i~ah~~ 191 (311)
T KOG0277|consen 182 KFMSIEAHNS 191 (311)
T ss_pred ceeEEEeccc
Confidence 2223444443
No 83
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=1.8e-07 Score=74.51 Aligned_cols=63 Identities=24% Similarity=0.403 Sum_probs=54.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC--EEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ--LLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~--~la~~s~d 79 (114)
...|.+|+..| .++.|++|+.||++++|.+.++.|++.++ ..+.|.+|+|+|.+. +||++...
T Consensus 400 tg~Vr~iSvdp-~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~ 464 (733)
T KOG0650|consen 400 TGLVRSISVDP-SGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGE 464 (733)
T ss_pred CCeEEEEEecC-CcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecC
Confidence 44599999999 99999999999999999999999999886 456899999999875 56766655
No 84
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.63 E-value=1.3e-07 Score=78.08 Aligned_cols=66 Identities=29% Similarity=0.467 Sum_probs=62.3
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|-+||.+|.||| ++.+|++||+|-.|++|+..+++|+.++.+|.+-|..+.|.+.--++.++|.|
T Consensus 49 eHdGpVRgv~FH~-~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDD 114 (1202)
T KOG0292|consen 49 EHDGPVRGVDFHP-TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDD 114 (1202)
T ss_pred ccCCccceeeecC-CCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEccCC
Confidence 3578999999999 99999999999999999999999999999999999999999988899999988
No 85
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.62 E-value=1.8e-07 Score=69.68 Aligned_cols=71 Identities=21% Similarity=0.360 Sum_probs=61.8
Q ss_pred CeecCeEEEEECCCCC--CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 13 HHLVPVNDVVFSPLSR--GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~--~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
.|...|+++.|.| .. +.|++|++||.|.+||.....++..+++|...|+.++..|.|++-.+.++| .|+..
T Consensus 81 ~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV 157 (362)
T KOG0294|consen 81 SHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLV 157 (362)
T ss_pred ccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhh
Confidence 5678899999988 55 379999999999999999999999999999999999999999876666666 68733
No 86
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=98.62 E-value=3.8e-08 Score=76.31 Aligned_cols=63 Identities=19% Similarity=0.373 Sum_probs=58.6
Q ss_pred cCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..++++.|+| ++ ++|++|+.|+.|+.||+++++.+..+..|-++|.++.|-++|+.+++++.|
T Consensus 300 ~~~~cvkf~p-d~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDd 363 (503)
T KOG0282|consen 300 KVPTCVKFHP-DNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDD 363 (503)
T ss_pred CCceeeecCC-CCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccC
Confidence 4578999999 66 899999999999999999999999898999999999999999999999887
No 87
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.60 E-value=1e-07 Score=49.59 Aligned_cols=30 Identities=27% Similarity=0.727 Sum_probs=27.7
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEe
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWD 44 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD 44 (114)
|..+|++|+|+| +++.|++++.|+.|++||
T Consensus 10 h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 10 HSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp SSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 456799999999 899999999999999997
No 88
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.60 E-value=1.5e-07 Score=75.28 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=58.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC--CEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG--QLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg--~~la~~s~d 79 (114)
.+=|..|+|+|+|.+.|++++-|++|++|.+.+..+.+++++|...|+++.|-+-| -+|.+|+.|
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD 206 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD 206 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence 44599999999888999999999999999999998999999999999999998855 388888887
No 89
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=98.59 E-value=1.8e-07 Score=75.70 Aligned_cols=86 Identities=16% Similarity=0.271 Sum_probs=70.6
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccccc----c
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEATV----I 87 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~~----~ 87 (114)
+.|+.++|-| ++..++.+. +..+.+||..++..+..+++|.+.|.+++|+.||+.||+|+.| .|..-.| .
T Consensus 13 hci~d~afkP-DGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY 90 (1081)
T KOG1538|consen 13 HCINDIAFKP-DGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY 90 (1081)
T ss_pred cchheeEECC-CCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee
Confidence 3699999999 986665554 4578999999999999999999999999999999999999999 6874433 3
Q ss_pred CCCCcEEEEEcCcccc
Q 033677 88 EEPPQIFIIRIDDIQQ 103 (114)
Q Consensus 88 ~~~~~i~i~~~~~~~~ 103 (114)
.+.-.|.-++.+++..
T Consensus 91 SH~D~IQCMsFNP~~h 106 (1081)
T KOG1538|consen 91 SHNDAIQCMSFNPITH 106 (1081)
T ss_pred ccCCeeeEeecCchHH
Confidence 6666777777777643
No 90
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=98.59 E-value=2.4e-07 Score=70.03 Aligned_cols=65 Identities=17% Similarity=0.258 Sum_probs=59.0
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
|..+|..+.|-+ + ..|++++.||.|++||.++++++..+.+|...|..++++|+++++++++.|.
T Consensus 326 he~~V~~l~w~~-t-~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~ 390 (399)
T KOG0296|consen 326 HEDGVTKLKWLN-T-DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDN 390 (399)
T ss_pred CCCceEEEEEcC-c-chheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCC
Confidence 455699999998 4 5788999999999999999999999999999999999999999999999873
No 91
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.58 E-value=3.4e-07 Score=67.14 Aligned_cols=64 Identities=17% Similarity=0.312 Sum_probs=56.7
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...|+++..+. +...++||+.|.++++||+.+++++.+++ .+.+|..+.|+++|.++++.+.+
T Consensus 51 HtGavW~~Did~-~s~~liTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 51 HTGAVWCCDIDW-DSKHLITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred CCceEEEEEecC-CcceeeeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehh
Confidence 466799999998 88999999999999999999999998875 57889999999999988776644
No 92
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.58 E-value=1.5e-07 Score=68.07 Aligned_cols=66 Identities=11% Similarity=0.142 Sum_probs=62.1
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
.+|.++.|+- ++++.++++.|.+|++|+...+.+++++.+|...|..++.+.|...||++..| .|+
T Consensus 18 gaV~avryN~-dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD 87 (307)
T KOG0316|consen 18 GAVRAVRYNV-DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD 87 (307)
T ss_pred cceEEEEEcc-CCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence 4599999999 99999999999999999999999999999999999999999999999999998 565
No 93
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=5.9e-08 Score=80.10 Aligned_cols=66 Identities=15% Similarity=0.300 Sum_probs=61.2
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
..|.+|+||| ..-.++++-..|.|++||.+.+.++..|..|++||..+.|.|++-+|++|+.| .|+
T Consensus 10 sRvKglsFHP-~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 10 SRVKGLSFHP-KRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWN 79 (1202)
T ss_pred ccccceecCC-CCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEe
Confidence 4588999999 88899999999999999999999999999999999999999999999998877 566
No 94
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=98.57 E-value=2.1e-07 Score=76.21 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=61.2
Q ss_pred cCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-----------------------------------
Q 033677 8 SKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF----------------------------------- 52 (114)
Q Consensus 8 ~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~----------------------------------- 52 (114)
..++.+|-.+|.+|+... .++.+++++.+|.+++||+.....+.
T Consensus 486 f~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 486 FGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred cccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 446667889999999998 88899999999999999988754222
Q ss_pred ------EecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 53 ------ELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 53 ------~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
.+.+|.+.|++++|||||++|++++-| .|+
T Consensus 565 t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 565 TRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD 604 (910)
T ss_pred hhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence 223467899999999999999999988 566
No 95
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.56 E-value=2.3e-07 Score=74.34 Aligned_cols=71 Identities=20% Similarity=0.318 Sum_probs=65.6
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEATV 86 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~~ 86 (114)
..+|++++.+| .+..|++|+.++.|++||-++++.+-.+++|...|..+-.++||..+.++++| .|+.|.+
T Consensus 171 k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ 245 (735)
T KOG0308|consen 171 KDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ 245 (735)
T ss_pred ccceeeeecCC-cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc
Confidence 46799999999 88899999999999999999999888899999999999999999999999999 7987754
No 96
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.54 E-value=2.3e-07 Score=74.69 Aligned_cols=66 Identities=20% Similarity=0.296 Sum_probs=60.3
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCC-----CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNE-----GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~D-----g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-|.|.|.+++.+| ++++++++... ..|++|...+......++.|.-.|+.++|||||++|++.+.|
T Consensus 523 GHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 523 GHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred cCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 4688999999999 99999998765 478899999988888899999999999999999999999999
No 97
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.54 E-value=4.1e-07 Score=70.36 Aligned_cols=96 Identities=19% Similarity=0.304 Sum_probs=74.4
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc----
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA---- 84 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~---- 84 (114)
.|...+.+++.+| ++.+|++|+.|..|.+||.++.+.++.+.+|.+.|.+++|......|.+++.| .|+.-
T Consensus 200 ~h~keil~~avS~-Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~ 278 (479)
T KOG0299|consen 200 GHVKEILTLAVSS-DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY 278 (479)
T ss_pred cccceeEEEEEcC-CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH
Confidence 5788899999999 99999999999999999999999999999999999999998766677778877 67622
Q ss_pred -cccCCCCcEEEEEcCcc-cccceeeec
Q 033677 85 -TVIEEPPQIFIIRIDDI-QQQSACVGS 110 (114)
Q Consensus 85 -~~~~~~~~i~i~~~~~~-~~~~~~~~~ 110 (114)
+.+.+-+. -|..+.++ ++.+.|||+
T Consensus 279 vetlyGHqd-~v~~IdaL~reR~vtVGg 305 (479)
T KOG0299|consen 279 VETLYGHQD-GVLGIDALSRERCVTVGG 305 (479)
T ss_pred HHHHhCCcc-ceeeechhcccceEEecc
Confidence 22222222 23344554 455667774
No 98
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.54 E-value=9.6e-08 Score=77.22 Aligned_cols=68 Identities=18% Similarity=0.326 Sum_probs=61.2
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE 83 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~ 83 (114)
...+..|.|+| -+.+++.|+.|+.+.+||.+...|.+.+.+|...|..+.|+|+|++++.+..| .|+.
T Consensus 112 ~~~~~sv~f~P-~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~ 183 (825)
T KOG0267|consen 112 LLNITSVDFHP-YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDL 183 (825)
T ss_pred ccCcceeeecc-ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecc
Confidence 34577889999 89999999999999999999888999999999999999999999999999986 5763
No 99
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.52 E-value=4.4e-07 Score=68.98 Aligned_cols=65 Identities=26% Similarity=0.480 Sum_probs=57.0
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-RLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...|.++.|+|.+..+|++|+.|+++++||+|+.. .++.+.+|.+-|.++.|+. |.++++|+.|
T Consensus 344 H~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD 409 (423)
T KOG0313|consen 344 HKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGAD 409 (423)
T ss_pred chhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCc
Confidence 345789999999444789999999999999999876 8899999999999999985 6689999988
No 100
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.52 E-value=5e-07 Score=71.68 Aligned_cols=65 Identities=12% Similarity=0.270 Sum_probs=58.1
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECC--CCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNH--GGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fsp--dg~~la~~s~d 79 (114)
|.+.||++.|+. ++.+|++|++|-.+.+||.-..+.+..+. +|...|.+++|-| +.+++++|..|
T Consensus 49 H~GCVN~LeWn~-dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD 116 (758)
T KOG1310|consen 49 HTGCVNCLEWNA-DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD 116 (758)
T ss_pred ccceecceeecC-CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc
Confidence 477899999999 99999999999999999999888777764 8899999999988 45789999988
No 101
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.51 E-value=1.6e-06 Score=62.78 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=62.7
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~ 82 (114)
.-.+.|.+|+..| .+++|++|-.|....+||++.++.++.+..|...|.++.|||...||.+++-|+-+
T Consensus 229 lessavaav~vdp-sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~i 297 (350)
T KOG0641|consen 229 LESSAVAAVAVDP-SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKI 297 (350)
T ss_pred cccceeEEEEECC-CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceE
Confidence 3456799999999 99999999999999999999999999999999999999999999999999877544
No 102
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=98.51 E-value=2.4e-07 Score=68.63 Aligned_cols=67 Identities=31% Similarity=0.451 Sum_probs=56.0
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGG-QLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d 79 (114)
+|...|.++.|+|+.+..|++|++||.|++||.+.. ..+..+.+|..-|.+|.|+|.- +++.+|++|
T Consensus 212 AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SD 280 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSD 280 (370)
T ss_pred hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCC
Confidence 456779999999955578999999999999999864 4567788999999999999954 577777777
No 103
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.50 E-value=2.4e-07 Score=70.83 Aligned_cols=64 Identities=22% Similarity=0.393 Sum_probs=57.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...|.-|+|||.-.+.|+++|.|.+|.+|++.+++.+..+. |++.|.+++|+.||.+|++.+.|
T Consensus 131 ~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckD 194 (472)
T KOG0303|consen 131 QRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKD 194 (472)
T ss_pred ceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeeccc
Confidence 45688899999334889999999999999999999888876 99999999999999999999999
No 104
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.50 E-value=1.3e-07 Score=72.76 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=59.7
Q ss_pred CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCC
Q 033677 11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-GQLLAVASSC 79 (114)
Q Consensus 11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d 79 (114)
...|...|.+++|+....+.|++||.|.+|++||+.++++...+..|.+.|.++.|+|. +.+|.+|+-|
T Consensus 239 ~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D 308 (463)
T KOG0270|consen 239 ASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYD 308 (463)
T ss_pred cccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEecccc
Confidence 34678889999999844589999999999999999999999999889999999999995 5678888744
No 105
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.49 E-value=4.4e-07 Score=74.84 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=44.4
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC--------CCCeEEEEECCCCCEE
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF--------SNSVASLSYNHGGQLL 73 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~--------~~~v~~v~fspdg~~l 73 (114)
|-.||.+|.|+| .+++|++.+.||.|++||++++.+...+.+. ...+..++|+|+|..|
T Consensus 137 h~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~l 203 (933)
T KOG1274|consen 137 HDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTL 203 (933)
T ss_pred cCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeE
Confidence 467899999999 9999999999999999999998766655422 2334555666664333
No 106
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=98.49 E-value=1.3e-06 Score=61.26 Aligned_cols=60 Identities=23% Similarity=0.519 Sum_probs=47.2
Q ss_pred cCeEEEEECCCCCCEEEE--EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVT--GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t--~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.+|.+++|+| +++.|++ |..++.|.+||++ .+.+..+. ..+++.|.|||+|++||+++..
T Consensus 60 ~~I~~~~WsP-~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~ 121 (194)
T PF08662_consen 60 GPIHDVAWSP-NGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFG 121 (194)
T ss_pred CceEEEEECc-CCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEcc
Confidence 4699999999 8887654 4457899999997 55555553 4677899999999999988743
No 107
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=2e-07 Score=71.08 Aligned_cols=63 Identities=21% Similarity=0.378 Sum_probs=55.2
Q ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC---Ccc
Q 033677 19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC---TYQ 82 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d---~~~ 82 (114)
..++|++ ++..+++++.||++++|+.-+...+.....|...|.++.|||||+.||+-+.| .|+
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~ 213 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWS 213 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEE
Confidence 5789999 99999999999999999966666566667889999999999999999998887 576
No 108
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.48 E-value=1.2e-06 Score=71.42 Aligned_cols=68 Identities=19% Similarity=0.210 Sum_probs=62.2
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
.+|+++.-+| +.-+|+.|..||.|++|+..+...+..+.+|...|+.+.|+..|..||+|+.| .|+..
T Consensus 66 ~evt~l~~~~-d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV 137 (888)
T KOG0306|consen 66 AEVTCLRSSD-DILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV 137 (888)
T ss_pred ceEEEeeccC-CcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec
Confidence 4789999899 88889999999999999999888888999999999999999999999999999 58743
No 109
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=98.48 E-value=8.9e-07 Score=66.32 Aligned_cols=69 Identities=17% Similarity=0.371 Sum_probs=61.0
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
+...||.+|+||| .+++|+.|.+-.++++||+.+.++...-. .|.+.|+.+.||+.|++.++|+.| .|+
T Consensus 214 qd~~~vrsiSfHP-sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwD 289 (430)
T KOG0640|consen 214 QDTEPVRSISFHP-SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWD 289 (430)
T ss_pred hccceeeeEeecC-CCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeec
Confidence 4477899999999 99999999999999999999998876553 567899999999999999999998 576
No 110
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=3.3e-07 Score=70.91 Aligned_cols=69 Identities=19% Similarity=0.227 Sum_probs=62.7
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
..+|.+|+-+| .+.+++.|+..|.|++|.+.+|..+..+.+|..+|+++.|+.||.+|.+|+.| .|...
T Consensus 81 Pg~v~al~s~n-~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~ 153 (476)
T KOG0646|consen 81 PGPVHALASSN-LGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLT 153 (476)
T ss_pred ccceeeeecCC-CceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEE
Confidence 45699999999 89888888899999999999999998889999999999999999999999999 57644
No 111
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=98.46 E-value=1.5e-06 Score=64.52 Aligned_cols=65 Identities=20% Similarity=0.232 Sum_probs=55.9
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEE-EEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLA-VASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la-~~s~d 79 (114)
|..+|..|.|.+ +++.|+++|.|.+|+.||++++++.++++.|..-|+++.-+.-|-.|+ +++.|
T Consensus 89 HsgAVM~l~~~~-d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD 154 (338)
T KOG0265|consen 89 HSGAVMELHGMR-DGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDD 154 (338)
T ss_pred ccceeEeeeecc-CCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCC
Confidence 466799999999 999999999999999999999999999999999999998665665555 45444
No 112
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.45 E-value=1.2e-06 Score=70.28 Aligned_cols=66 Identities=14% Similarity=0.151 Sum_probs=61.2
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-|..-|..|-.++ ++..++++|.||+|++||+...+|+.++..|...|.++.-+|+-..+.+|+.|
T Consensus 211 GHTdNVr~ll~~d-DGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd 276 (735)
T KOG0308|consen 211 GHTDNVRVLLVND-DGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRD 276 (735)
T ss_pred ccccceEEEEEcC-CCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCC
Confidence 3466688999999 99999999999999999999999999999999999999999999999999888
No 113
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=98.44 E-value=1.7e-06 Score=63.21 Aligned_cols=64 Identities=20% Similarity=0.427 Sum_probs=55.0
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...|..+-|.. ..+.|++.+.|++|++||.+++..++.+. ...+|+++.+++||++|.++...
T Consensus 142 htg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gs 205 (334)
T KOG0278|consen 142 HTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGS 205 (334)
T ss_pred CCCcceeEEEec-cCceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCc
Confidence 466788999988 77888898999999999999999888875 56789999999999998776554
No 114
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=98.43 E-value=4e-07 Score=70.81 Aligned_cols=61 Identities=21% Similarity=0.308 Sum_probs=52.1
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
++|.+|++.| ++++++|.|.|..++|||+++...+.++.. +-+...++||.-| +||.+.++
T Consensus 294 g~V~siAv~~-~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg-lLA~~~G~ 354 (545)
T KOG1272|consen 294 GPVSSIAVDR-GGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG-LLALSYGD 354 (545)
T ss_pred CCcceEEECC-CCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc-ceeeecCC
Confidence 4588999999 999999999999999999998877766654 6678899999877 67777776
No 115
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=98.42 E-value=2.6e-07 Score=72.60 Aligned_cols=66 Identities=12% Similarity=0.259 Sum_probs=60.5
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
..+++.+| |.++.+++..||.|.+||+.+...++.|++|.+.+.+|.+++||..|.+|+-| .|+.-
T Consensus 512 CyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlr 581 (705)
T KOG0639|consen 512 CYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLR 581 (705)
T ss_pred hhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhh
Confidence 56789999 99998899999999999999999999999999999999999999999999988 58733
No 116
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.41 E-value=1.2e-06 Score=65.48 Aligned_cols=64 Identities=17% Similarity=0.209 Sum_probs=56.5
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC--EEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ--LLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~--~la~~s~d 79 (114)
.|..+|++|+.+. .++++||.|-+|++||++.+..+..+-.|.+.|+++.|.++-. .|.+|+.|
T Consensus 41 aH~~sitavAVs~---~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdD 106 (362)
T KOG0294|consen 41 AHAGSITALAVSG---PYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDD 106 (362)
T ss_pred ccccceeEEEecc---eeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCC
Confidence 5688999999886 6999999999999999999988888888999999999999764 67778777
No 117
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.40 E-value=4.4e-06 Score=63.35 Aligned_cols=97 Identities=16% Similarity=0.201 Sum_probs=70.4
Q ss_pred eecCeEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC-----Ccc--cc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGD--NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC-----TYQ--EA 84 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s--~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d-----~~~--~~ 84 (114)
+...+.++++++ .+.+++--+ ..|.|.+||..+-+....+..|.+++.+++|+|+|.+||+||.- .+. .|
T Consensus 128 n~~gl~AlS~n~-~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 128 NPKGLCALSPNN-ANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CccceEeeccCC-CCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 344466667776 555665532 35899999999999899999999999999999999999999865 222 22
Q ss_pred c---cc---CCCCcEEEEEcCcccccceeeecC
Q 033677 85 T---VI---EEPPQIFIIRIDDIQQQSACVGSS 111 (114)
Q Consensus 85 ~---~~---~~~~~i~i~~~~~~~~~~~~~~~~ 111 (114)
+ |+ ..+..||--..+.+.+..+|.+.|
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~T 239 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNT 239 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCCCCeEEEecCC
Confidence 2 22 335557766677777777777654
No 118
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.40 E-value=3.7e-07 Score=73.19 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=59.9
Q ss_pred eecCeEEEEECCCCC--CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSR--GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~--~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...||+|.|-| -+ ..|++|++|.+|++||.++..|+.++.+|...|+.+.|.|.--++++|+.|
T Consensus 182 HekGVN~Vdyy~-~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsED 248 (794)
T KOG0276|consen 182 HEKGVNCVDYYT-GGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSED 248 (794)
T ss_pred cccCcceEEecc-CCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCC
Confidence 467799999987 44 489999999999999999999999999999999999999998999999998
No 119
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=8.7e-07 Score=64.38 Aligned_cols=66 Identities=32% Similarity=0.437 Sum_probs=55.4
Q ss_pred eecCeEEEEE-CCCCCCEEEEEeCCCcEEEEeCCCCe--eeEEecCCCCCeEEEEECCC--CCEEEEEeCC
Q 033677 14 HLVPVNDVVF-SPLSRGAFVTGDNEGYVAAWDAQSRR--RLFELPRFSNSVASLSYNHG--GQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f-~p~~~~~~~t~s~Dg~I~iwD~~~~~--~~~~~~~~~~~v~~v~fspd--g~~la~~s~d 79 (114)
|..||..++| ||+-+++|++++-||.|.+|.-.+++ .......|...|++|+|.|. |-+||++++|
T Consensus 55 h~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 55 HSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred CCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCC
Confidence 4789999998 77667999999999999999988773 33445678999999999996 4688999988
No 120
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=65.27 Aligned_cols=59 Identities=15% Similarity=0.289 Sum_probs=51.5
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEE
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLL 73 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~l 73 (114)
.|..||.+|+|++ +++.|+|+|.|..|.+||+..+.+++.+. .+.+|..+.|.|-..-.
T Consensus 63 aH~~pi~sl~WS~-dgr~LltsS~D~si~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 63 AHVRPITSLCWSR-DGRKLLTSSRDWSIKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNK 121 (405)
T ss_pred ccccceeEEEecC-CCCEeeeecCCceeEEEeccCCCceeEEE-ccCccceeeeccccCCe
Confidence 5788999999999 99999999999999999999999888774 57889999998855433
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.38 E-value=9.6e-07 Score=66.41 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=59.0
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-..|..++-.. .+..+.+++.|.+..+|.++++.|+.++.+|.+.|++|+|+|.+.+++++++|
T Consensus 148 kDGiW~Vaa~~-tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD 211 (481)
T KOG0300|consen 148 KDGIWHVAADS-TQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGD 211 (481)
T ss_pred ccceeeehhhc-CCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCC
Confidence 44588888777 67789999999999999999999999999999999999999999999999998
No 122
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=98.36 E-value=1.8e-06 Score=68.49 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=54.4
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+|-.-|.++.|+| .++++++||.|-..++||.. +..++.-..|..+|++++|+|+ +.+|.++-.
T Consensus 184 AHDGiiL~~~W~~-~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n 247 (737)
T KOG1524|consen 184 AHDGLVLSLSWST-QSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYAITSVAFNPE-KDYLLWSYN 247 (737)
T ss_pred ccCcEEEEeecCc-cccceeecCCceeEEeeccc-CcccccCChhccceeeeeeccc-cceeeeeee
Confidence 3445599999999 89999999999999999987 4556667789999999999999 788887754
No 123
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.36 E-value=1.9e-06 Score=67.08 Aligned_cols=69 Identities=29% Similarity=0.331 Sum_probs=57.9
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC---Ccccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC---TYQEA 84 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d---~~~~~ 84 (114)
..-|-+.+|+|-++.+++|||-||.|++||.+.. ..+.++ .|..||-.+.|=|.|.++|++++. .|+..
T Consensus 153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~ 225 (487)
T KOG0310|consen 153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAGGNSVKVWDLT 225 (487)
T ss_pred cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcCCCeEEEEEec
Confidence 4558899999944569999999999999999987 444444 689999999999999999999887 68854
No 124
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=1.5e-06 Score=64.49 Aligned_cols=60 Identities=18% Similarity=0.398 Sum_probs=53.9
Q ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-CCCCeEEEEECCCCCEEEEEeCC
Q 033677 19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-FSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-~~~~v~~v~fspdg~~la~~s~d 79 (114)
...+|.| +++.+++|+.||+|.+|+++++..+..+.+ +..+++++.|+|--..+|++++.
T Consensus 236 ~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~s~ 296 (311)
T KOG1446|consen 236 LSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSASSN 296 (311)
T ss_pred eeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecCce
Confidence 4788999 999999999999999999999998888887 68899999999988788887765
No 125
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=2.8e-06 Score=67.67 Aligned_cols=64 Identities=27% Similarity=0.440 Sum_probs=53.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec------CCC-----CCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP------RFS-----NSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~------~~~-----~~v~~v~fspdg~~la~~s~d 79 (114)
..++|.|..+| ...+|++|+.||.|.+||.++...+..+. .++ ..|++++|+.||-.||+|++.
T Consensus 175 ~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~ 249 (703)
T KOG2321|consen 175 SGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST 249 (703)
T ss_pred cccceeeeecC-ccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC
Confidence 46799999999 88999999999999999999876555543 122 349999999999999999987
No 126
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=98.32 E-value=2.9e-06 Score=64.54 Aligned_cols=64 Identities=17% Similarity=0.326 Sum_probs=54.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.-+|+.+.|++ ++..+++++- |..|.+||.+++..+.......+.++-+.|||||.+|.+++-|
T Consensus 195 h~pVtsmqwn~-dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~d 259 (445)
T KOG2139|consen 195 HNPVTSMQWNE-DGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCD 259 (445)
T ss_pred CceeeEEEEcC-CCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEeccc
Confidence 36899999999 9988888876 5799999999988766555556778999999999998888877
No 127
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=98.32 E-value=2.8e-06 Score=66.88 Aligned_cols=66 Identities=21% Similarity=0.408 Sum_probs=56.2
Q ss_pred CCeecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 12 RHHLVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 12 ~~~~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.+|..|..+|+|+| .+ .+|++.|.|..|.+||.+.......+ ....|.++++|+++|.+|++|++.
T Consensus 205 ~~HsAP~~gicfsp-sne~l~vsVG~Dkki~~yD~~s~~s~~~l-~y~~Plstvaf~~~G~~L~aG~s~ 271 (673)
T KOG4378|consen 205 EAHSAPCRGICFSP-SNEALLVSVGYDKKINIYDIRSQASTDRL-TYSHPLSTVAFSECGTYLCAGNSK 271 (673)
T ss_pred hhccCCcCcceecC-CccceEEEecccceEEEeeccccccccee-eecCCcceeeecCCceEEEeecCC
Confidence 35778899999999 66 57899999999999999987765555 356789999999999999999876
No 128
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.32 E-value=9.9e-06 Score=63.13 Aligned_cols=67 Identities=22% Similarity=0.325 Sum_probs=57.6
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-GQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d 79 (114)
.|..||..+.|+|.++.+|++|++|+.+++||+.+......+.+|.+-|.+.+|+|- +.++++|+=|
T Consensus 108 ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYD 175 (487)
T KOG0310|consen 108 AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYD 175 (487)
T ss_pred hccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCC
Confidence 467899999999966678999999999999999998876678899999999999995 4577777766
No 129
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=98.31 E-value=3.3e-06 Score=64.68 Aligned_cols=66 Identities=23% Similarity=0.309 Sum_probs=55.4
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC--------C--------CeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ--------S--------RRRLFELPRFSNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~--------~--------~~~~~~~~~~~~~v~~v~fspdg~~la~~ 76 (114)
.|.-+||.|.|+| +++++++|+++|.|.+|-.. + ....+.+.+|...|-.++|+||+..++++
T Consensus 63 ~H~~aVN~vRf~p-~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~ 141 (434)
T KOG1009|consen 63 RHTRAVNVVRFSP-DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSG 141 (434)
T ss_pred CCcceeEEEEEcC-CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeee
Confidence 4567899999999 99999999999999999765 2 12233445788999999999999999999
Q ss_pred eCC
Q 033677 77 SSC 79 (114)
Q Consensus 77 s~d 79 (114)
+-|
T Consensus 142 s~d 144 (434)
T KOG1009|consen 142 SVD 144 (434)
T ss_pred ecc
Confidence 988
No 130
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.31 E-value=1.7e-06 Score=65.72 Aligned_cols=61 Identities=23% Similarity=0.339 Sum_probs=55.4
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|..+||.|.|.. .+|++++.|.+|++|++.+.+.++.+.+|...|.++.|. |+++++|++|
T Consensus 319 HrAaVNvVdfd~---kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr--~rlvVSGSSD 379 (499)
T KOG0281|consen 319 HRAAVNVVDFDD---KYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSD 379 (499)
T ss_pred hhhheeeecccc---ceEEEecCCceEEEEeccceeeehhhhcccccceehhcc--CeEEEecCCC
Confidence 456799999987 599999999999999999999999999999999988885 8899999999
No 131
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.30 E-value=1.3e-06 Score=65.08 Aligned_cols=68 Identities=24% Similarity=0.366 Sum_probs=53.8
Q ss_pred eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCC-eeeEEe--------------cCCCCCeEEEEECCCCCEEEEEe
Q 033677 14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSR-RRLFEL--------------PRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~-~~~~~~--------------~~~~~~v~~v~fspdg~~la~~s 77 (114)
|...|.+|.|+| ..+ .|++|+.||.|++||++.. .++..+ ..|.+.|+.++|+.||.++++.+
T Consensus 187 Hr~~vlaV~Wsp-~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~g 265 (397)
T KOG4283|consen 187 HRDGVLAVEWSP-SSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCG 265 (397)
T ss_pred ccCceEEEEecc-CceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhcc
Confidence 356799999999 664 6899999999999999864 333322 24567889999999999999888
Q ss_pred CC----Ccc
Q 033677 78 SC----TYQ 82 (114)
Q Consensus 78 ~d----~~~ 82 (114)
.| .|+
T Consensus 266 td~r~r~wn 274 (397)
T KOG4283|consen 266 TDDRIRVWN 274 (397)
T ss_pred CccceEEee
Confidence 87 476
No 132
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=98.30 E-value=3.9e-06 Score=68.89 Aligned_cols=75 Identities=23% Similarity=0.431 Sum_probs=65.0
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcE
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQI 93 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i 93 (114)
|..+|++++|++ ++..|++||.+|.+.+|.+.+++ .+-++....+|..+.+|||+.+.+....| ++|
T Consensus 250 H~~~V~~L~fS~-~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~D-----------NqI 316 (792)
T KOG1963|consen 250 HHDEVNSLSFSS-DGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLED-----------NQI 316 (792)
T ss_pred cccccceeEEec-CCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecC-----------ceE
Confidence 456899999999 99999999999999999999987 44567788999999999999999999988 677
Q ss_pred EEEEcCcc
Q 033677 94 FIIRIDDI 101 (114)
Q Consensus 94 ~i~~~~~~ 101 (114)
.+.++.++
T Consensus 317 ~li~~~dl 324 (792)
T KOG1963|consen 317 HLIKASDL 324 (792)
T ss_pred EEEeccch
Confidence 77766443
No 133
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=98.29 E-value=1.6e-06 Score=65.85 Aligned_cols=64 Identities=19% Similarity=0.343 Sum_probs=56.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
|.+.|.++.|.. ..|++|+.|.+|++||.++++++..+..|-..|..+.|+. .+|++++.| .|+
T Consensus 236 HtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWd 303 (499)
T KOG0281|consen 236 HTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWD 303 (499)
T ss_pred CCCcEEeeeccc---eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEe
Confidence 467789999887 5999999999999999999999999999999999999984 388888888 576
No 134
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=98.28 E-value=8.3e-07 Score=66.91 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=64.9
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
+|...|+++.|+. ++..+++++.|-++++.-+.++++++.+.+|..-|+...|.+||..+.++++| .|.
T Consensus 304 AHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~ 376 (508)
T KOG0275|consen 304 AHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWH 376 (508)
T ss_pred hhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEec
Confidence 5678899999999 99999999999999999999999999999999999999999999999999998 576
No 135
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=1.5e-05 Score=57.69 Aligned_cols=68 Identities=21% Similarity=0.338 Sum_probs=53.6
Q ss_pred CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee-----eEEecCCCCCeEEEEECC----CCCEEEEEeCC
Q 033677 11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR-----LFELPRFSNSVASLSYNH----GGQLLAVASSC 79 (114)
Q Consensus 11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~-----~~~~~~~~~~v~~v~fsp----dg~~la~~s~d 79 (114)
..+|-..|.+.+|+| .+++|++|+.|.+|++..++...+ ..++.-|++.|..++|-. .|.+||++..-
T Consensus 85 ~khhkgsiyc~~ws~-~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gag 161 (350)
T KOG0641|consen 85 NKHHKGSIYCTAWSP-CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAG 161 (350)
T ss_pred ccccCccEEEEEecC-ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCC
Confidence 567788999999999 999999999999999977665432 234667899999999943 35678876654
No 136
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.27 E-value=1.9e-06 Score=70.27 Aligned_cols=66 Identities=21% Similarity=0.427 Sum_probs=55.8
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-CCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-GQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-g~~la~~s~d 79 (114)
|.-.|+.+.|++...++|++||.||.|+.||++......++......|..|+|+|. +.+||++...
T Consensus 132 H~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 132 HERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred hccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCC
Confidence 34558999999955589999999999999999998888888888889999999994 6678876643
No 137
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=98.26 E-value=8.1e-06 Score=60.06 Aligned_cols=68 Identities=12% Similarity=0.207 Sum_probs=63.7
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
|.-|++.|.++. ++.+|.+++.|.+..+|-..+++.+-++.+|.+.|.++..+.+.+.|.+|+.| .|+
T Consensus 9 HERplTqiKyN~-eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 9 HERPLTQIKYNR-EGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred CccccceEEecC-CCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEE
Confidence 456789999999 99999999999999999998999999999999999999999999999999999 576
No 138
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.24 E-value=1.1e-06 Score=66.79 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=54.4
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..|.|+|+| ....|++|+.|..++.||++.. ..+...++|-..|.++.|||.|+.|++|+-|
T Consensus 231 RTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 231 RTNTICWNP-EAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD 293 (433)
T ss_pred cccceecCc-cccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence 357899999 8888999999999999999874 4455567899999999999999999999877
No 139
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=98.23 E-value=2.7e-06 Score=64.77 Aligned_cols=67 Identities=18% Similarity=0.264 Sum_probs=56.2
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECCCCC-EEEEEeCC----Ccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNHGGQ-LLAVASSC----TYQ 82 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fspdg~-~la~~s~d----~~~ 82 (114)
.+++++|.++| ...+|++|+.|..|++||.+++ -...++.+|..-|.++.|+|... +|++++-| .|+
T Consensus 300 ~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 300 NKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred CcceeEeeccc-ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 56789999999 8999999999999999999975 23456779999999999999765 67777777 565
No 140
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=98.20 E-value=1.8e-06 Score=65.55 Aligned_cols=66 Identities=20% Similarity=0.273 Sum_probs=54.4
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|+++|.+|.|+| .|+.|++||-|.+|++|..+.+..-..+. .--..|.++.||-|.+++.+||.|
T Consensus 270 dhvsAV~dVdfsp-tG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd 336 (433)
T KOG0268|consen 270 DHVSAVMDVDFSP-TGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDD 336 (433)
T ss_pred ccceeEEEeccCC-CcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCC
Confidence 5788999999999 99999999999999999998765322111 112468999999999999999988
No 141
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=98.19 E-value=8.2e-06 Score=65.32 Aligned_cols=67 Identities=27% Similarity=0.349 Sum_probs=59.6
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
|..+|+++.++. .++++|+.||+|++||+.++++++.+.+|...|.++.+.+. ..+.+|+-| .|+..
T Consensus 330 h~~~V~~v~~~~---~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~ 400 (537)
T KOG0274|consen 330 HTGPVNCVQLDE---PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLR 400 (537)
T ss_pred ccccEEEEEecC---CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCC
Confidence 788999999985 69999999999999999999999999999999999998765 688889888 57633
No 142
>KOG4328 consensus WD40 protein [Function unknown]
Probab=98.17 E-value=1.2e-05 Score=62.51 Aligned_cols=65 Identities=17% Similarity=0.245 Sum_probs=51.7
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee----eEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR----LFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~----~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
..|+.|+++|-...+|+|+|.|++.++||++.-.. +...-.|..+|.+..|||+|-.|++.+.|.
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~ 391 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDN 391 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCC
Confidence 36999999993347899999999999999986321 223347889999999999887788887773
No 143
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=98.16 E-value=4.8e-06 Score=63.89 Aligned_cols=88 Identities=18% Similarity=0.383 Sum_probs=70.0
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Cc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TY 81 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~ 81 (114)
|..+|.++.|+|++.+.|++||+|.+|.+|++=.+ +.+..+.+|...|-.|.|.|.- ..|++++.| .|
T Consensus 80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iW 159 (472)
T KOG0303|consen 80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIW 159 (472)
T ss_pred ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceEEEE
Confidence 47889999999988899999999999999998543 3456677899999999999975 467777777 68
Q ss_pred cccc--c---cCCCCcEEEEEcCcc
Q 033677 82 QEAT--V---IEEPPQIFIIRIDDI 101 (114)
Q Consensus 82 ~~~~--~---~~~~~~i~i~~~~~~ 101 (114)
+.+. . ..++-.||-++.+.+
T Consensus 160 nv~tgeali~l~hpd~i~S~sfn~d 184 (472)
T KOG0303|consen 160 NVGTGEALITLDHPDMVYSMSFNRD 184 (472)
T ss_pred eccCCceeeecCCCCeEEEEEeccC
Confidence 8553 2 366777888877665
No 144
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=6.4e-06 Score=64.97 Aligned_cols=67 Identities=16% Similarity=0.350 Sum_probs=58.7
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEE-ecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFE-LPRFSNSVASLSYNHGGQLLAVASSC----TYQE 83 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~-~~~~~~~v~~v~fspdg~~la~~s~d----~~~~ 83 (114)
|..-|-+++|+. ..+.+|+.||.|..+|++..+.... +..|...|-.++|++|+.+||+|+.| .|+.
T Consensus 259 h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~ 330 (484)
T KOG0305|consen 259 HASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDG 330 (484)
T ss_pred cCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccC
Confidence 566799999997 6899999999999999998776655 77899999999999999999999998 4654
No 145
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=98.13 E-value=1.2e-05 Score=62.52 Aligned_cols=64 Identities=22% Similarity=0.287 Sum_probs=54.7
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC-CeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN-SVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~-~v~~v~fspdg~~la~~s~d 79 (114)
...|.+++|+. ++..|++.+.+|.|.+||++...+++.+.+... .-++++.|++|.|||+|+..
T Consensus 344 eG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~ 408 (514)
T KOG2055|consen 344 EGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS 408 (514)
T ss_pred ccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence 44588999998 999999999999999999999999999976543 34688889999999999865
No 146
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.12 E-value=5.8e-05 Score=56.46 Aligned_cols=84 Identities=19% Similarity=0.189 Sum_probs=63.7
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC----eeeEEecCCCCCeEEEEECC--CCCEEEEEeCC----Cccccc
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR----RRLFELPRFSNSVASLSYNH--GGQLLAVASSC----TYQEAT 85 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~----~~~~~~~~~~~~v~~v~fsp--dg~~la~~s~d----~~~~~~ 85 (114)
.-|.++.|++ -|+.+++|+.|+++++||.++. .+...++.|.+.|..|.|-+ -|+.+|+++-| .|++-+
T Consensus 14 DlihdVs~D~-~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~ 92 (361)
T KOG2445|consen 14 DLIHDVSFDF-YGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQE 92 (361)
T ss_pred ceeeeeeecc-cCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecc
Confidence 4489999999 9999999999999999997543 45567789999999999965 48999999988 577631
Q ss_pred ---ccCCCCcEEEEEcCc
Q 033677 86 ---VIEEPPQIFIIRIDD 100 (114)
Q Consensus 86 ---~~~~~~~i~i~~~~~ 100 (114)
+..+..=+....+++
T Consensus 93 ~~~~~~~~~Wv~~ttl~D 110 (361)
T KOG2445|consen 93 KSEEAHGRRWVRRTTLVD 110 (361)
T ss_pred cccccccceeEEEEEeec
Confidence 223333344444444
No 147
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=98.12 E-value=2.1e-05 Score=59.23 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=47.7
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-----eeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-----RLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-----~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
|...|++++|+. ++..|+|++.|+.|++||+++.+ +++.- -..+..+.+.|+||.+-+++..
T Consensus 85 H~~~vt~~~FsS-dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~ 151 (420)
T KOG2096|consen 85 HKKEVTDVAFSS-DGKKLATISGDRSIRLWDVRDFENKEHRCIRQN-VEYDHPTRVVFAPDCKSVVVSV 151 (420)
T ss_pred cCCceeeeEEcC-CCceeEEEeCCceEEEEecchhhhhhhhHhhcc-ccCCCceEEEECCCcceEEEEE
Confidence 356799999999 99999999999999999998742 22211 2234678999999988665544
No 148
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=98.11 E-value=2.8e-05 Score=59.92 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=54.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC----CCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF----SNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~----~~~v~~v~fspdg~~la~~s~d 79 (114)
...|++|..++ ++..+.+++-|.++.+.|+++.+....+... ....+.+.|||+++|+|+|+.|
T Consensus 341 gg~vtSl~ls~-~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~d 408 (459)
T KOG0288|consen 341 GGRVTSLDLSM-DGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSAD 408 (459)
T ss_pred CcceeeEeecc-CCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCC
Confidence 44699999999 9988999999999999999998766665422 3348899999999999999998
No 149
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=98.10 E-value=1.3e-05 Score=60.45 Aligned_cols=68 Identities=13% Similarity=0.245 Sum_probs=54.7
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
-...+-++-+| .+.++++.+.|-++++||++.. ..+..|++|...|+++.|+.|.+ +++|+.| .|+.-
T Consensus 314 d~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLr 386 (481)
T KOG0300|consen 314 DSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLR 386 (481)
T ss_pred chhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeec
Confidence 34567778899 8999999999999999999854 34456789999999999998664 6678877 57643
No 150
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=98.10 E-value=3.1e-05 Score=64.26 Aligned_cols=64 Identities=25% Similarity=0.332 Sum_probs=60.6
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..|+..++|+. ++++++.||+|-.|++-+..+....+.+.+|..+|.++.|+|.+++||+.+.|
T Consensus 96 tlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d 159 (933)
T KOG1274|consen 96 TLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD 159 (933)
T ss_pred eccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC
Confidence 56889999999 99999999999999999999998888999999999999999999999999988
No 151
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=98.09 E-value=2.1e-05 Score=58.75 Aligned_cols=69 Identities=16% Similarity=0.419 Sum_probs=53.3
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-----------------------------------------
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF----------------------------------------- 52 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~----------------------------------------- 52 (114)
|-|.|.++-|-|.+..+|.+++-|.++++||..+-+...
T Consensus 100 Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs 179 (397)
T KOG4283|consen 100 HKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGS 179 (397)
T ss_pred ceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCc
Confidence 478888999988777888889889999999977643332
Q ss_pred ---EecCCCCCeEEEEECCCCC-EEEEEeCC----Ccc
Q 033677 53 ---ELPRFSNSVASLSYNHGGQ-LLAVASSC----TYQ 82 (114)
Q Consensus 53 ---~~~~~~~~v~~v~fspdg~-~la~~s~d----~~~ 82 (114)
.+.+|...|.++.|+|..+ .||+|+.| .|+
T Consensus 180 ~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWD 217 (397)
T KOG4283|consen 180 FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWD 217 (397)
T ss_pred ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEE
Confidence 2334668899999999876 57788888 576
No 152
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=98.08 E-value=9.2e-06 Score=65.75 Aligned_cols=65 Identities=20% Similarity=0.271 Sum_probs=55.3
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe----eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR----RLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~----~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|..-|+.|+|+| ++.+|++.+.|.++.+|...... .....+.|..-|.++.|+|++++||++|.|
T Consensus 571 HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRD 639 (764)
T KOG1063|consen 571 HSLTVTRLAFSP-DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRD 639 (764)
T ss_pred cceEEEEEEECC-CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCC
Confidence 456799999999 99999999999999999875432 122256788899999999999999999999
No 153
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=98.07 E-value=1.9e-05 Score=64.63 Aligned_cols=68 Identities=18% Similarity=0.157 Sum_probs=61.9
Q ss_pred CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+..|......|...| .+.++++...|.++.++|+.+++++.+..+|...|+.+.|.+|-+.|.+.++|
T Consensus 637 s~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgD 704 (1080)
T KOG1408|consen 637 SRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGD 704 (1080)
T ss_pred cccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCC
Confidence 344555577889999 99999999999999999999999999999999999999999999999999988
No 154
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.05 E-value=1.2e-05 Score=41.52 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=28.8
Q ss_pred eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 49 RRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 49 ~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+++..+.+|..+|++|+|+|++.+||+++.|
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D 32 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSD 32 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETT
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCC
Confidence 5678899999999999999999999999988
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=98.04 E-value=1e-05 Score=65.43 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=55.6
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-+|.++.||| ...-|+..+..|.+++||+.+++.+..+.+|.+.|.+..|+.||.+||+++.|
T Consensus 129 ~~vE~l~fHp-TaDgil~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKd 191 (1012)
T KOG1445|consen 129 VIVECLRFHP-TADGILASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKD 191 (1012)
T ss_pred eEEEEeeccc-CcCceEEeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecCC
Confidence 4588999999 76555555568999999999999999999999999999999999999999887
No 156
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=98.02 E-value=5.9e-05 Score=58.68 Aligned_cols=66 Identities=12% Similarity=0.324 Sum_probs=55.8
Q ss_pred CeecCeEEEEECCC-CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPL-SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~-~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+|.-+|+++...+- ....++|+|.|.++++||+..+..+.++ ..+.++++++.+|-++.+.+|+.+
T Consensus 172 ~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti-~fp~si~av~lDpae~~~yiGt~~ 238 (476)
T KOG0646|consen 172 DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTI-TFPSSIKAVALDPAERVVYIGTEE 238 (476)
T ss_pred cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEE-ecCCcceeEEEcccccEEEecCCc
Confidence 46678998887661 3468999999999999999999877665 467889999999999999999988
No 157
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=98.00 E-value=7.7e-05 Score=56.00 Aligned_cols=98 Identities=13% Similarity=0.192 Sum_probs=73.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccccccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEATVI 87 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~~~ 87 (114)
..||++-+|++ +...++.+-....|.+|..... +...++..|+..|+.|.|+|.+..|++++.| .|...+..
T Consensus 10 ~~pitchAwn~-drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~ 88 (361)
T KOG1523|consen 10 LEPITCHAWNS-DRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG 88 (361)
T ss_pred cCceeeeeecC-CCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC
Confidence 45899999999 9999999999999999987754 4667788999999999999999899999988 57654322
Q ss_pred -CCCCcEEEEEcCcc-----cccce--eeecCCC
Q 033677 88 -EEPPQIFIIRIDDI-----QQQSA--CVGSSSR 113 (114)
Q Consensus 88 -~~~~~i~i~~~~~~-----~~~~~--~~~~~~~ 113 (114)
-.|+-+.+|..-+. .+... .+||++|
T Consensus 89 ~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar 122 (361)
T KOG1523|consen 89 TWKPTLVLLRINRAATCVKWSPKENKFAVGSGAR 122 (361)
T ss_pred eeccceeEEEeccceeeEeecCcCceEEeccCcc
Confidence 33344444444332 23232 7888876
No 158
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=97.97 E-value=4.9e-05 Score=60.00 Aligned_cols=64 Identities=14% Similarity=0.236 Sum_probs=53.0
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee-eEEe-cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR-LFEL-PRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~-~~~~-~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..+++.++|+| ++.+|+.|+.|+.|++|.+..... .... +-+..+|+.+.||+|+++|.+-+.|
T Consensus 447 ~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d 512 (626)
T KOG2106|consen 447 NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGD 512 (626)
T ss_pred CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCc
Confidence 56799999999 999999999999999998875432 2222 2344899999999999999988887
No 159
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=97.96 E-value=2.1e-05 Score=64.42 Aligned_cols=62 Identities=16% Similarity=0.278 Sum_probs=54.4
Q ss_pred ecCeEEEEECCCCCCEEEEEe--CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 15 LVPVNDVVFSPLSRGAFVTGD--NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s--~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
..++++|+|+| ++.++++|- ..-.+++|++.....+..+..|...|++++|+|.++|+++.+
T Consensus 78 Rk~~t~vAfS~-~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vtcvaFsp~~kyvvSVG 141 (1080)
T KOG1408|consen 78 RKPLTCVAFSQ-NGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVTCVAFSPGNKYVVSVG 141 (1080)
T ss_pred CcceeEEEEcC-CCcEEEecccCCCccceeeeeccccchhhhhhccccceeeeecCCCcEEEeec
Confidence 45899999999 999999875 456899999999888889999999999999999999988544
No 160
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=97.96 E-value=2.6e-05 Score=61.86 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=48.9
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH 68 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp 68 (114)
....+|+|+| |+.+|++|++|-.|.+|.+..++.+..-++|..-|+.|+|.|
T Consensus 333 GGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 333 GGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEEEcC-CccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence 3578999999 999999999999999999999999988899999999999986
No 161
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.95 E-value=3.3e-05 Score=61.51 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=53.5
Q ss_pred CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+......|.+++++| +...|+.|..||.|.+||...+... +....-.++-++|+|+|.++++|+.-
T Consensus 255 sipL~s~v~~ca~sp-~E~kLvlGC~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~q 320 (545)
T PF11768_consen 255 SIPLPSQVICCARSP-SEDKLVLGCEDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQ 320 (545)
T ss_pred EEecCCcceEEecCc-ccceEEEEecCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCC
Confidence 344556789999999 9999999999999999999766432 33445667899999999999999874
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.94 E-value=9.9e-06 Score=68.17 Aligned_cols=70 Identities=23% Similarity=0.449 Sum_probs=55.0
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCC-CCEEEEEeCC----Ccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHG-GQLLAVASSC----TYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspd-g~~la~~s~d----~~~ 82 (114)
.|.++|.+|.|+++.+++|++|+.||.|.|||+.+-+...... ...+.|.+++|+.. .++||+++.+ .|+
T Consensus 114 ~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWD 190 (1049)
T KOG0307|consen 114 KHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWD 190 (1049)
T ss_pred ccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecc
Confidence 4677899999999555799999999999999998755444432 24678999999874 5688888776 466
No 163
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.92 E-value=0.00019 Score=51.23 Aligned_cols=59 Identities=14% Similarity=0.215 Sum_probs=46.0
Q ss_pred eEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 18 VNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 18 V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
+..++|+| ++..+ ++++.++.|.+||..+++....+..+.. +..++|+|+|+.+++++.
T Consensus 33 ~~~l~~~~-dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~ 92 (300)
T TIGR03866 33 PRGITLSK-DGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANE 92 (300)
T ss_pred CCceEECC-CCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcC
Confidence 56799999 88765 6778899999999998887766654433 567899999997776654
No 164
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=2.4e-05 Score=56.96 Aligned_cols=73 Identities=22% Similarity=0.283 Sum_probs=57.6
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEecCCCCCeEEEEECC--CCCEEEEEeCC----Cccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFELPRFSNSVASLSYNH--GGQLLAVASSC----TYQE 83 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~~~~~~~v~~v~fsp--dg~~la~~s~d----~~~~ 83 (114)
+|...|-++.+.- -+.+|+|++.|++|+++..++. +.+.++.+|.+||..++|-. .|.+||+++-| .|.+
T Consensus 9 ~H~D~IHda~lDy-ygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 9 QHEDMIHDAQLDY-YGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhHhhhhh-hcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 3445566666665 6789999999999999999874 45677889999999999965 79999998877 5665
Q ss_pred ccc
Q 033677 84 ATV 86 (114)
Q Consensus 84 ~~~ 86 (114)
.+.
T Consensus 88 ~~g 90 (299)
T KOG1332|consen 88 ENG 90 (299)
T ss_pred CCC
Confidence 543
No 165
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.91 E-value=4.3e-05 Score=61.93 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=64.4
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc-ccc-
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE-ATV- 86 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~-~~~- 86 (114)
.|..+|+++.+-| .+ .++||+.|.+|++|.- ++.++++.+|.+-|..+++=|++. |++++-| .|+. |+-
T Consensus 138 gH~asVWAv~~l~-e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l 212 (745)
T KOG0301|consen 138 GHTASVWAVASLP-EN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVL 212 (745)
T ss_pred CcchheeeeeecC-CC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCcee
Confidence 4678899999999 65 8999999999999976 778889999999999999988765 5567777 6886 332
Q ss_pred ---cCCCCcEEEEE
Q 033677 87 ---IEEPPQIFIIR 97 (114)
Q Consensus 87 ---~~~~~~i~i~~ 97 (114)
..+.+.||...
T Consensus 213 ~~~~ghtn~vYsis 226 (745)
T KOG0301|consen 213 LEMHGHTNFVYSIS 226 (745)
T ss_pred eeeeccceEEEEEE
Confidence 25566777777
No 166
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=97.91 E-value=8.4e-06 Score=62.50 Aligned_cols=66 Identities=24% Similarity=0.355 Sum_probs=60.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
|...|..++|.| +++.+++++.|..+++||+..+.....+.+|..-+..++|.|-++++++-+.|.
T Consensus 122 h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr 187 (434)
T KOG1009|consen 122 HRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDR 187 (434)
T ss_pred cccchhhhhccC-CCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCc
Confidence 456688999999 999999999999999999999999988889999999999999999999888774
No 167
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.89 E-value=9.6e-05 Score=55.10 Aligned_cols=72 Identities=11% Similarity=0.219 Sum_probs=59.6
Q ss_pred cCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe---eeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677 8 SKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR---RLFELPRFSNSVASLSYNHGG-QLLAVASSC 79 (114)
Q Consensus 8 ~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~---~~~~~~~~~~~v~~v~fspdg-~~la~~s~d 79 (114)
+++..++..|+++..|+..+.++|.+.+.|-+..+||++++. ...++..|+.+|..|+|...| ..||+.+.|
T Consensus 143 ~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaD 218 (364)
T KOG0290|consen 143 NNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGAD 218 (364)
T ss_pred cCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCC
Confidence 334556788999999998666999999999999999999863 345567999999999999976 478888777
No 168
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=97.89 E-value=0.00021 Score=50.95 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=44.5
Q ss_pred EEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 19 NDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 19 ~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
..++|+| +++.+ ++.+.++.+.+||.++++....+ .+...+..++|+|+|++|+++..
T Consensus 210 ~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~ 268 (300)
T TIGR03866 210 VGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYL-LVGQRVWQLAFTPDEKYLLTTNG 268 (300)
T ss_pred cceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEE-EeCCCcceEEECCCCCEEEEEcC
Confidence 4688999 88764 44556778999999988766544 34457889999999999887654
No 169
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.00015 Score=54.02 Aligned_cols=86 Identities=14% Similarity=0.271 Sum_probs=65.4
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc----
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA---- 84 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~---- 84 (114)
.|..|+.+++|.+ . ..+++|+.||.|+.+|+.+++.. .+..|..+|++|.+++-...+.+|+-| .|+--
T Consensus 52 ~~~~plL~c~F~d-~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~ 128 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-E-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVV 128 (323)
T ss_pred ecCCceeeeeccC-C-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccc
Confidence 4577899999997 4 57899999999999999988754 466899999999999866677788877 56622
Q ss_pred -cccCCCCcEEEEEcCcc
Q 033677 85 -TVIEEPPQIFIIRIDDI 101 (114)
Q Consensus 85 -~~~~~~~~i~i~~~~~~ 101 (114)
..+..+..||-..+...
T Consensus 129 ~~~~d~~kkVy~~~v~g~ 146 (323)
T KOG1036|consen 129 VGTFDQGKKVYCMDVSGN 146 (323)
T ss_pred ccccccCceEEEEeccCC
Confidence 11344447777766554
No 170
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=97.89 E-value=9.7e-05 Score=57.67 Aligned_cols=66 Identities=9% Similarity=0.218 Sum_probs=52.8
Q ss_pred CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC--eeeEEecCCCCCeEEEEECCCCC-EEEEEeC
Q 033677 12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR--RRLFELPRFSNSVASLSYNHGGQ-LLAVASS 78 (114)
Q Consensus 12 ~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~--~~~~~~~~~~~~v~~v~fspdg~-~la~~s~ 78 (114)
++...+|++|.||| ...++++++.||.+++|.++.. ..+..+.....||.+.+|.|+|+ .+++++.
T Consensus 210 ~ps~~~I~sv~FHp-~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r 278 (514)
T KOG2055|consen 210 HPSHGGITSVQFHP-TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR 278 (514)
T ss_pred CcCcCCceEEEecC-CCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEeccc
Confidence 45567899999999 8899999999999999987643 34445555678999999999998 5555554
No 171
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.88 E-value=1.2e-05 Score=65.35 Aligned_cols=60 Identities=20% Similarity=0.289 Sum_probs=46.8
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-|++|+|+. ++.+|++|+.|..|.+|..+-...++ -.|.+.|.++.|+|-...||+++-.
T Consensus 55 tVycVAys~-dGkrFASG~aDK~VI~W~~klEG~Lk--YSH~D~IQCMsFNP~~h~LasCsLs 114 (1081)
T KOG1538|consen 55 TVYCVAYAK-DGKRFASGSADKSVIIWTSKLEGILK--YSHNDAIQCMSFNPITHQLASCSLS 114 (1081)
T ss_pred eEEEEEEcc-CCceeccCCCceeEEEecccccceee--eccCCeeeEeecCchHHHhhhcchh
Confidence 399999999 99999999999999999875433222 2577778888888877777776543
No 172
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.88 E-value=4.8e-05 Score=60.35 Aligned_cols=73 Identities=19% Similarity=0.185 Sum_probs=58.0
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeC------CCC----eeeEEecCCCCCeEEEEECCCCCEEEEEeCC---
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDA------QSR----RRLFELPRFSNSVASLSYNHGGQLLAVASSC--- 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~------~~~----~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--- 79 (114)
.|..||.++++.+ .++.+++||.||+|+.|++ .+. .....+.+|.+.|..+++|+....|++++.|
T Consensus 342 aH~gPVl~v~v~~-n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTv 420 (577)
T KOG0642|consen 342 AHEGPVLCVVVPS-NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTV 420 (577)
T ss_pred cccCceEEEEecC-CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceE
Confidence 3567899999999 8999999999999999933 221 2223467899999999999988889999888
Q ss_pred -Ccccccc
Q 033677 80 -TYQEATV 86 (114)
Q Consensus 80 -~~~~~~~ 86 (114)
.|+..++
T Consensus 421 r~w~~~~~ 428 (577)
T KOG0642|consen 421 RLWEPTEE 428 (577)
T ss_pred EeeccCCc
Confidence 5775543
No 173
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.88 E-value=0.00015 Score=52.05 Aligned_cols=65 Identities=29% Similarity=0.541 Sum_probs=53.8
Q ss_pred eecCeEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC-EEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ-LLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~-~la~~s~d 79 (114)
|...|..++|+| ++..++.++. |+.+++|+......+..+..|...|..++|+|++. +++.++.|
T Consensus 154 ~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d 220 (466)
T COG2319 154 HSESVTSLAFSP-DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD 220 (466)
T ss_pred CcccEEEEEECC-CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence 455688999999 8888888885 99999999998777888888899999999999998 44443545
No 174
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.88 E-value=0.00016 Score=58.54 Aligned_cols=63 Identities=13% Similarity=0.348 Sum_probs=56.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...|.+|+|.+ . ..|++.+.+|.|..||+.+.+..+......++|.+++.+|.+..+++|+.|
T Consensus 69 drsIE~L~W~e-~-~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcdd 131 (691)
T KOG2048|consen 69 DRSIESLAWAE-G-GRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDD 131 (691)
T ss_pred CCceeeEEEcc-C-CeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCC
Confidence 34589999997 4 566788889999999999999999998889999999999999999999887
No 175
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=97.87 E-value=6.1e-05 Score=61.09 Aligned_cols=68 Identities=21% Similarity=0.328 Sum_probs=58.9
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
|...|.++++-| + ..|++++.||.|++||+ +++++....+|..-|-+++..+++..+++++.| .|..+
T Consensus 178 HtD~VRgL~vl~-~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 178 HTDCVRGLAVLD-D-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred chhheeeeEEec-C-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 566799999998 4 46889999999999999 688888999999999999988888899999888 58765
No 176
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=97.86 E-value=0.00014 Score=56.66 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=52.7
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC----eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR----RRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~----~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.+.+.|++|+..| ..+++++|+.+|.|++|-+.++ +.+..+ ...+-|++++|+++|+.+.+|.+-
T Consensus 378 ~~~~Witsla~i~-~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~l-s~~GfVNsl~f~~sgk~ivagiGk 446 (479)
T KOG0299|consen 378 NGNFWITSLAVIP-GSDLLASGSWSGCVRLWKIEDGLRAINLLYSL-SLVGFVNSLAFSNSGKRIVAGIGK 446 (479)
T ss_pred ccccceeeeEecc-cCceEEecCCCCceEEEEecCCccccceeeec-ccccEEEEEEEccCCCEEEEeccc
Confidence 3346899999999 8899999999999999999887 233333 356779999999999977777665
No 177
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.83 E-value=0.00017 Score=55.94 Aligned_cols=62 Identities=23% Similarity=0.278 Sum_probs=44.4
Q ss_pred ecCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
..++...+|+| +++.|+..+.+ ..|.+||+++++... +.........++|+|||+.|+.++.
T Consensus 203 ~~~v~~p~wSP-DG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~~~~~~wSPDG~~La~~~~ 267 (429)
T PRK01742 203 SQPLMSPAWSP-DGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGHNGAPAFSPDGSRLAFASS 267 (429)
T ss_pred CCccccceEcC-CCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCccCceeECCCCCEEEEEEe
Confidence 34688999999 99888776643 369999998875322 2222333457899999999888653
No 178
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=97.83 E-value=1.1e-05 Score=63.72 Aligned_cols=63 Identities=27% Similarity=0.340 Sum_probs=54.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...+.+|.+++ ++..|.||+-|.+|+-||++++..+.+. +...+|.++.++|++++||+|-..
T Consensus 551 tDGascIdis~-dGtklWTGGlDntvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMen 613 (705)
T KOG0639|consen 551 TDGASCIDISK-DGTKLWTGGLDNTVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMEN 613 (705)
T ss_pred CCCceeEEecC-CCceeecCCCccceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeeccc
Confidence 45578999999 9999999999999999999998765433 346789999999999999998766
No 179
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=97.82 E-value=0.0001 Score=59.14 Aligned_cols=68 Identities=21% Similarity=0.317 Sum_probs=57.6
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEA 84 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~ 84 (114)
|...|.+++|.. -+..+++|+.|.++++||..++.|...+.+|...|.++..-+ .++++|+.| .|+.-
T Consensus 248 H~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~ 319 (537)
T KOG0274|consen 248 HFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVT 319 (537)
T ss_pred CCCCceeEEEec-CCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEecc
Confidence 467799999986 678999999999999999999999999999999999988754 467777888 56533
No 180
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.81 E-value=7.6e-05 Score=57.28 Aligned_cols=62 Identities=26% Similarity=0.320 Sum_probs=55.3
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|.+++.++ ++++++.|+.||.|-+++..+.+.++..+ .|...|+.+.|+||.++++.-+.+
T Consensus 283 siSsl~VS~-dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~ 345 (398)
T KOG0771|consen 283 SISSLAVSD-DGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSD 345 (398)
T ss_pred cceeEEEcC-CCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccC
Confidence 588999999 99999999999999999999888776665 788899999999999999986655
No 181
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.80 E-value=5.5e-05 Score=36.57 Aligned_cols=29 Identities=31% Similarity=0.673 Sum_probs=26.2
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEe
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWD 44 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD 44 (114)
..+|+++.|+| ...++++++.|+.+++||
T Consensus 12 ~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 12 TGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred CCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 45699999999 888999999999999996
No 182
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=97.77 E-value=0.00014 Score=54.90 Aligned_cols=57 Identities=18% Similarity=0.345 Sum_probs=45.7
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---eEEecCCCCCeEEEEECCCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---LFELPRFSNSVASLSYNHGG 70 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---~~~~~~~~~~v~~v~fspdg 70 (114)
|...|+.|.|+|.+.++|++||.||.|.++|+..... +.....+...|..+.|..++
T Consensus 164 H~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 164 HNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred ccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCC
Confidence 5667999999996679999999999999999976421 22233567789999999888
No 183
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.76 E-value=0.00045 Score=53.59 Aligned_cols=61 Identities=16% Similarity=0.147 Sum_probs=46.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
..++...+|+| +++.|+..+. +..|.+||+.+++.. .+......+...+|||||+.|+...
T Consensus 201 ~~~v~~p~wSp-DG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~ 264 (435)
T PRK05137 201 SSLVLTPRFSP-NRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSL 264 (435)
T ss_pred CCCeEeeEECC-CCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEE
Confidence 34688999999 9987776553 468999999887643 3445566777899999999887554
No 184
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=97.76 E-value=0.00028 Score=54.07 Aligned_cols=59 Identities=15% Similarity=0.245 Sum_probs=45.8
Q ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..+.|+| +++.+++++.||.|.++|+.+++.+.+++. ......+++|+||++++++...
T Consensus 40 ~~~~~s~-Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~-G~~~~~i~~s~DG~~~~v~n~~ 98 (369)
T PF02239_consen 40 AGLKFSP-DGRYLYVANRDGTVSVIDLATGKVVATIKV-GGNPRGIAVSPDGKYVYVANYE 98 (369)
T ss_dssp EEEE-TT--SSEEEEEETTSEEEEEETTSSSEEEEEE--SSEEEEEEE--TTTEEEEEEEE
T ss_pred eEEEecC-CCCEEEEEcCCCeEEEEECCcccEEEEEec-CCCcceEEEcCCCCEEEEEecC
Confidence 3578999 999988889999999999999998888864 4456789999999999887643
No 185
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.74 E-value=4.9e-05 Score=61.27 Aligned_cols=69 Identities=14% Similarity=0.278 Sum_probs=59.3
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEE--ecCCCCCeEEEEECCCC-CEEEEEeCC----Ccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFE--LPRFSNSVASLSYNHGG-QLLAVASSC----TYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~--~~~~~~~v~~v~fspdg-~~la~~s~d----~~~ 82 (114)
.|-..|.++.|-| -...|++++.|.++++||+.+.++... +.+|...|.+++|.|+. ..|++|+.| .|+
T Consensus 98 aH~nAifDl~wap-ge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD 173 (720)
T KOG0321|consen 98 AHKNAIFDLKWAP-GESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWD 173 (720)
T ss_pred cccceeEeeccCC-CceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEE
Confidence 3455699999999 778899999999999999999887765 78999999999999965 578889888 576
No 186
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=97.73 E-value=6.1e-05 Score=59.79 Aligned_cols=67 Identities=15% Similarity=0.264 Sum_probs=58.8
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC--------CeeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS--------RRRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~--------~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
.|...|..+.|+| ....|++++.||.|++|.++. -+.+.+|.+|.+||.++++.++++.+.+|+.|.
T Consensus 292 s~~d~ir~l~~~~-sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 292 SHDDCIRALAFHP-SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred cchhhhhhhhcCC-CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 4566788999999 888999999999999999932 256788899999999999999999999999983
No 187
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=97.72 E-value=0.00013 Score=58.03 Aligned_cols=61 Identities=16% Similarity=0.388 Sum_probs=49.8
Q ss_pred cCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|-|++-|+| .++.|+.+|-+ |.+.+||+.+.+++..+.... -+-+.|+|||++|.+++.-
T Consensus 312 gpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTa 375 (566)
T KOG2315|consen 312 GPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTA 375 (566)
T ss_pred CCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEecc
Confidence 4578999999 89988887764 899999999988877766443 3568999999999988864
No 188
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.72 E-value=0.00015 Score=54.25 Aligned_cols=66 Identities=18% Similarity=0.361 Sum_probs=53.6
Q ss_pred CeecCeEEEEECCCCC---CEEEEEeCCCcEEEEeCCCC--------------------eeeEEecCCCCCeEEEEECCC
Q 033677 13 HHLVPVNDVVFSPLSR---GAFVTGDNEGYVAAWDAQSR--------------------RRLFELPRFSNSVASLSYNHG 69 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~---~~~~t~s~Dg~I~iwD~~~~--------------------~~~~~~~~~~~~v~~v~fspd 69 (114)
.|..||.+|+|.|.-+ .+|++++.|| |+||.++.. +.+..+.+|..+|..+.|+=.
T Consensus 221 d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmt 299 (361)
T KOG2445|consen 221 DHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMT 299 (361)
T ss_pred CCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeee
Confidence 5688999999999334 5799999999 999998731 123345578899999999999
Q ss_pred CCEEEEEeCC
Q 033677 70 GQLLAVASSC 79 (114)
Q Consensus 70 g~~la~~s~d 79 (114)
|.+|++.+.|
T Consensus 300 GtiLsStGdD 309 (361)
T KOG2445|consen 300 GTILSSTGDD 309 (361)
T ss_pred eeEEeecCCC
Confidence 9999988877
No 189
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=97.72 E-value=3.2e-05 Score=60.47 Aligned_cols=66 Identities=18% Similarity=0.359 Sum_probs=59.2
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
.++..++-+| -+..+-+|...|+|.+|.....+.+.++..|.++|.+|++.++|+|||+++-| .|+
T Consensus 252 G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 252 GRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD 321 (545)
T ss_pred CccchhhcCC-ccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence 3466778899 77889999999999999999999888888999999999999999999999988 576
No 190
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.00027 Score=57.06 Aligned_cols=62 Identities=23% Similarity=0.388 Sum_probs=54.2
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeE-EEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVA-SLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~-~v~fspdg~~la~~s~d 79 (114)
-.|.-+.|+| .-.+||.+..+|.|.++.+. .+.+..++-++.+++ +++|.|||++||+|-.|
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kd 83 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKD 83 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecC
Confidence 3467889999 88899999999999999988 666778876777777 99999999999999988
No 191
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=97.71 E-value=0.00029 Score=60.46 Aligned_cols=66 Identities=20% Similarity=0.312 Sum_probs=50.1
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
...|+.++.++..+.+|++||.||+|++||.+.- +...++......+..+...+.|..+|+++.|.
T Consensus 1048 s~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1048 SSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred cccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 3447788887724489999999999999998752 22233334567888999999999999998883
No 192
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=97.70 E-value=0.00012 Score=60.38 Aligned_cols=73 Identities=25% Similarity=0.379 Sum_probs=58.5
Q ss_pred CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC--C--eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677 12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS--R--RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE 83 (114)
Q Consensus 12 ~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~--~--~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~ 83 (114)
.+|..++++.+++| .++.+++|..||.|.+|.--. . .....+.=|..+|++++|++||.+|.+|+.. .|..
T Consensus 202 ~~Htf~~t~~~~sp-n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~ 280 (792)
T KOG1963|consen 202 VHHTFNITCVALSP-NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQL 280 (792)
T ss_pred hhhcccceeEEecc-ccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEee
Confidence 47888899999999 999999999999999994322 1 1122344467899999999999999999887 6886
Q ss_pred cc
Q 033677 84 AT 85 (114)
Q Consensus 84 ~~ 85 (114)
+.
T Consensus 281 ~T 282 (792)
T KOG1963|consen 281 ET 282 (792)
T ss_pred cC
Confidence 64
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=97.69 E-value=0.00011 Score=55.10 Aligned_cols=66 Identities=18% Similarity=0.278 Sum_probs=54.0
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC-CCe--eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ-SRR--RLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~-~~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|-..|++|.|+| ..+.|++++.|..-++|... .++ ....+..+...+++|.|+|.+..||+|++-
T Consensus 53 ~Hd~~vtgvdWap-~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 53 EHDKIVTGVDWAP-KSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred hhCcceeEEeecC-CCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCc
Confidence 4567799999999 88899999999999999884 332 223344677889999999999999999874
No 194
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=97.68 E-value=0.00036 Score=56.41 Aligned_cols=60 Identities=15% Similarity=0.307 Sum_probs=41.4
Q ss_pred eEEEEECCCCCCEEEEEeC-CCcEEEEeCCCCeeeEEec--------CC---CCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSRRRLFELP--------RF---SNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~~~~~~~~--------~~---~~~v~~v~fspdg~~la~~s~d 79 (114)
|+.+.|- |..+|+++|. |+.|++||++......... .+ ...++++.....|.+|.+.+.|
T Consensus 221 vTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD 292 (720)
T KOG0321|consen 221 VTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD 292 (720)
T ss_pred eEEEEEe--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence 5555554 6778888888 9999999999865544332 12 2246677777778877766667
No 195
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.68 E-value=0.00022 Score=52.21 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=54.9
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEE-CCCCCEEEEEeCC----Ccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSY-NHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~f-spdg~~la~~s~d----~~~ 82 (114)
+-.||++.+.| ..+-++.++.|+.++.||+++++....+++|.+-|.++.- +.++ .+.+|+.| .|+
T Consensus 114 vPeINam~ldP-~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~-qilsG~EDGtvRvWd 184 (325)
T KOG0649|consen 114 VPEINAMWLDP-SENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG-QILSGAEDGTVRVWD 184 (325)
T ss_pred CCccceeEecc-CCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc-ceeecCCCccEEEEe
Confidence 44689999999 6666667778999999999999999999999999999998 4455 45678888 576
No 196
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=97.68 E-value=0.00018 Score=56.97 Aligned_cols=84 Identities=17% Similarity=0.296 Sum_probs=59.4
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe-cCCCCCeEEEEECCCCCEEEEEeCC-----CcccccccCCCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL-PRFSNSVASLSYNHGGQLLAVASSC-----TYQEATVIEEPP 91 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~-~~~~~~v~~v~fspdg~~la~~s~d-----~~~~~~~~~~~~ 91 (114)
|.-|.|+|....+|.+++.+|.|.+||+........+ ..|..|...|+|+|..+.|.+.-++ .|+.+.....+.
T Consensus 167 vRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~ 246 (673)
T KOG4378|consen 167 VRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR 246 (673)
T ss_pred EEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce
Confidence 4578899933467889999999999999987766554 4788999999999987655444444 344443334444
Q ss_pred cEEEEEcCcc
Q 033677 92 QIFIIRIDDI 101 (114)
Q Consensus 92 ~i~i~~~~~~ 101 (114)
-.|-++++.+
T Consensus 247 l~y~~Plstv 256 (673)
T KOG4378|consen 247 LTYSHPLSTV 256 (673)
T ss_pred eeecCCccee
Confidence 5666666665
No 197
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.67 E-value=0.0006 Score=52.86 Aligned_cols=62 Identities=26% Similarity=0.296 Sum_probs=45.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
..++...+|+| +++.|+..+.+ ..|.+||+.+++... +......+...+|+|||+.||....
T Consensus 195 ~~~v~~p~wSP-DG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~ 259 (427)
T PRK02889 195 PEPIISPAWSP-DGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALS 259 (427)
T ss_pred CCCcccceEcC-CCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEc
Confidence 34678899999 99887766543 369999999886433 3334455678999999998886543
No 198
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=97.63 E-value=0.00081 Score=52.31 Aligned_cols=67 Identities=18% Similarity=0.243 Sum_probs=51.4
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+|..+|.++.|+|.....|++|+.|+++.+.|.+...+....-...+.|-.++|.|.....+.++.|
T Consensus 284 ~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 284 HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred hcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 5788999999999667899999999999999999643332222456779999999987655444444
No 199
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.0011 Score=53.93 Aligned_cols=65 Identities=20% Similarity=0.258 Sum_probs=53.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEE--ecCCCCCeEEEEECCCCCEEEEEeCCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFE--LPRFSNSVASLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~--~~~~~~~v~~v~fspdg~~la~~s~d~ 80 (114)
..+|++++.+| .+..++.|++||.+...+...+...+. +....+.|.+++|+|++..+|.|+.|.
T Consensus 110 gg~IWsiai~p-~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg 176 (691)
T KOG2048|consen 110 GGAIWSIAINP-ENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDG 176 (691)
T ss_pred CcceeEEEeCC-ccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCc
Confidence 56799999999 889999999999887777776654432 224457899999999999999999994
No 200
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=97.57 E-value=0.0017 Score=46.56 Aligned_cols=64 Identities=36% Similarity=0.584 Sum_probs=51.2
Q ss_pred eecCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeE-EecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLF-ELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~-~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|..+|..++|.| ++. .+++++.|+.|++||...+..+. .+..+.... ...|+|++.++++++.|
T Consensus 197 ~~~~v~~~~~~~-~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d 262 (466)
T COG2319 197 HTDPVSSLAFSP-DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSD 262 (466)
T ss_pred CCCceEEEEEcC-CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCC
Confidence 567899999999 876 56666999999999998777776 577776664 44899999888877776
No 201
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=97.56 E-value=3.6e-05 Score=56.54 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=52.5
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELPRFSNSVASLSYNH-GGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~~~~~~v~~v~fsp-dg~~la~~s~d 79 (114)
...|.+++-+|..++++++|+.||.+.+||.++.... ..+..|..++..+-|.| +++.|.+++.|
T Consensus 179 ~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 179 LDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence 4458899999955578889999999999999987433 34567899999999999 56778888887
No 202
>KOG4328 consensus WD40 protein [Function unknown]
Probab=97.55 E-value=0.00058 Score=53.35 Aligned_cols=65 Identities=17% Similarity=0.340 Sum_probs=49.0
Q ss_pred eecCeEEEEECCCCC--CEEEEEeCCCcEEEEeCCCC----eeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSR--GAFVTGDNEGYVAAWDAQSR----RRLFELPRFSNSVASLSYNHGG-QLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~--~~~~t~s~Dg~I~iwD~~~~----~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d 79 (114)
+..+|++++||| .. .++++|..-|.|-+||+.+. .-+..+..|..+|+++.|+|.. ..+.+.|-|
T Consensus 185 ~~~Rit~l~fHP-t~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyD 256 (498)
T KOG4328|consen 185 TDRRITSLAFHP-TENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYD 256 (498)
T ss_pred cccceEEEEecc-cCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccC
Confidence 355699999999 65 57888888999999999632 3455677899999999999965 344444444
No 203
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=97.55 E-value=0.00044 Score=52.24 Aligned_cols=60 Identities=12% Similarity=0.205 Sum_probs=48.7
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
+|..+-... .+.+|++++.|..|.+||++ ++.+..+..........+.||+|+.+|++.-
T Consensus 189 ~~i~iGiA~-~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gF 248 (420)
T KOG2096|consen 189 DIINIGIAG-NAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGF 248 (420)
T ss_pred ceEEEeecC-CceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecC
Confidence 445566665 66899999999999999999 7778877766666778899999999987664
No 204
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.53 E-value=0.00073 Score=53.84 Aligned_cols=67 Identities=18% Similarity=0.121 Sum_probs=60.5
Q ss_pred CCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 12 RHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 12 ~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.-|-.+|+++.++. +-.-|.+++.|+.+..|+......++.++.....+.+++++|||.++++|+..
T Consensus 99 ~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~as~~ 165 (541)
T KOG4547|consen 99 DKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTASRQ 165 (541)
T ss_pred CCCCCcceeeeccc-ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEeccce
Confidence 34567799999998 77889999999999999999999999999888999999999999999998876
No 205
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=97.51 E-value=0.00016 Score=57.67 Aligned_cols=64 Identities=13% Similarity=0.266 Sum_probs=50.3
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
+|..+|.+-.|+| ++.-|+++|.||.|++|.. ++-....+.....+|.+++|.|+.+-+..+-+
T Consensus 102 AH~~A~~~gRW~~-dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g 165 (737)
T KOG1524|consen 102 AHAAAISSGRWSP-DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQG 165 (737)
T ss_pred hhhhhhhhcccCC-CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEecC
Confidence 5678899999999 9999999999999999974 44433344455778999999999876655443
No 206
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=97.51 E-value=0.00031 Score=52.45 Aligned_cols=65 Identities=18% Similarity=0.356 Sum_probs=50.4
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee------eEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR------LFELPRFSNSVASLSYNH-GGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~------~~~~~~~~~~v~~v~fsp-dg~~la~~s~d 79 (114)
|...||+|+|.|.....|.|+|+|..+-+||+..... +..+ .....|+.+.|++ .+.++|++...
T Consensus 286 H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a~~EVNqi~Ws~~~~Dwiai~~~k 357 (364)
T KOG0290|consen 286 HQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TAGGEVNQIQWSSSQPDWIAICFGK 357 (364)
T ss_pred CcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hccceeeeeeecccCCCEEEEEecC
Confidence 4667999999996678999999999999999976422 1112 2467899999996 46789988754
No 207
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=97.50 E-value=0.0015 Score=49.74 Aligned_cols=59 Identities=19% Similarity=0.221 Sum_probs=43.5
Q ss_pred CeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 17 PVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
++...+|+| +++.|+....+ ..|++||+.+++... +......+.+++|+|||+.|+...
T Consensus 191 ~~~~p~~Sp-dg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~ 252 (417)
T TIGR02800 191 PILSPAWSP-DGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSL 252 (417)
T ss_pred ceecccCCC-CCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEE
Confidence 477888999 99887776543 479999998875432 334455667899999999887654
No 208
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=97.48 E-value=0.00024 Score=53.70 Aligned_cols=58 Identities=24% Similarity=0.391 Sum_probs=48.5
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 21 VVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 21 v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
....| +++.|++|+.||.|++||+++ +.....+..+...++.++++|-=-++|++++.
T Consensus 303 FDld~-~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 303 FDLDP-KGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EecCC-CCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence 34468 789999999999999999998 56566677888999999999986678887765
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.47 E-value=0.0011 Score=51.48 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=43.5
Q ss_pred cCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
.++...+|+| +++.|+..+.+ ..|.+||+.+++.. .+..........+|+|||+.|+...
T Consensus 204 ~~v~~p~wSp-Dg~~la~~s~~~~~~~l~~~dl~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~ 266 (433)
T PRK04922 204 EPILSPAWSP-DGKKLAYVSFERGRSAIYVQDLATGQRE-LVASFRGINGAPSFSPDGRRLALTL 266 (433)
T ss_pred CccccccCCC-CCCEEEEEecCCCCcEEEEEECCCCCEE-EeccCCCCccCceECCCCCEEEEEE
Confidence 3577889999 99888776643 46999999887643 3333444556889999999887543
No 210
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.00021 Score=60.48 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=60.6
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCCCcc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG-QLLAVASSCTYQ 82 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d~~~ 82 (114)
.|...|.++.|++.|..++++++.|+.|..|+.++++.+..+.....-+..+.|+|.. .+||+++-|.+.
T Consensus 251 ~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI 321 (1049)
T KOG0307|consen 251 GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKI 321 (1049)
T ss_pred ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccce
Confidence 3456799999999555899999999999999999999999998878889999999954 589988888654
No 211
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.45 E-value=6.1e-05 Score=62.50 Aligned_cols=68 Identities=21% Similarity=0.364 Sum_probs=62.1
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Ccc
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQ 82 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~ 82 (114)
|..+|.++.|.. .+..+++|++|..+++|...++.++....+|...|+.++.+.+...+|+++-| .|.
T Consensus 189 H~naVyca~fDr-tg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWr 260 (1113)
T KOG0644|consen 189 HRNAVYCAIFDR-TGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWR 260 (1113)
T ss_pred hhhheeeeeecc-ccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEe
Confidence 355699999999 99999999999999999999999999999999999999999888889999888 576
No 212
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=97.45 E-value=0.00068 Score=50.59 Aligned_cols=68 Identities=18% Similarity=0.238 Sum_probs=53.2
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEE-ecCCCCCeEEEEECC-CCCEEEEEeCCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFE-LPRFSNSVASLSYNH-GGQLLAVASSCT 80 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~-~~~~~~~v~~v~fsp-dg~~la~~s~d~ 80 (114)
.|-+++..+.|+-++.+++++||+||.+..||++. ++.+.. .+.|...|.+|.=|| .+.++|+|+=|+
T Consensus 163 ~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe 233 (339)
T KOG0280|consen 163 VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDE 233 (339)
T ss_pred ccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecccc
Confidence 46788889999875568999999999999999993 344433 346777888888777 578999998773
No 213
>PRK05137 tolB translocation protein TolB; Provisional
Probab=97.41 E-value=0.0017 Score=50.31 Aligned_cols=60 Identities=20% Similarity=0.179 Sum_probs=43.8
Q ss_pred CeEEEEECCCCCCEE-EEEeCCCc--EEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 17 PVNDVVFSPLSRGAF-VTGDNEGY--VAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~-~t~s~Dg~--I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
.+...+|+| ++..| ++.+.+|. |.+||+.++.. ..+..+........|+|||+.|+..+.
T Consensus 247 ~~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~ 309 (435)
T PRK05137 247 MTFAPRFSP-DGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESD 309 (435)
T ss_pred cccCcEECC-CCCEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEEC
Confidence 456789999 98765 46666664 77789887764 445555555678999999999987764
No 214
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.39 E-value=0.0029 Score=48.77 Aligned_cols=60 Identities=17% Similarity=0.203 Sum_probs=42.9
Q ss_pred cCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
.++...+|+| +++.|+..+.+ ..|.+||+.+++.. .+......+...+|+|||+.||...
T Consensus 199 ~~~~~p~wSp-DG~~la~~s~~~~~~~l~~~~l~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~ 261 (430)
T PRK00178 199 EPILSPRWSP-DGKRIAYVSFEQKRPRIFVQNLDTGRRE-QITNFEGLNGAPAWSPDGSKLAFVL 261 (430)
T ss_pred CceeeeeECC-CCCEEEEEEcCCCCCEEEEEECCCCCEE-EccCCCCCcCCeEECCCCCEEEEEE
Confidence 3567889999 99887665543 36889999887643 3333344556789999999888654
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.38 E-value=0.0023 Score=49.72 Aligned_cols=60 Identities=17% Similarity=0.104 Sum_probs=43.7
Q ss_pred eEEEEECCCCCCEEEE-EeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPLSRGAFVT-GDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t-~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+..+.|+| +++.|+. .+.+| .|.+||+.+++.. .+......+....|+|||+.|+..+.+
T Consensus 245 ~~~~~~SP-DG~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 245 NGAPAFSP-DGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred cCCeEECC-CCCEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCC
Confidence 34679999 9976664 44455 5888999887644 344444567889999999998877754
No 216
>PRK01742 tolB translocation protein TolB; Provisional
Probab=97.37 E-value=0.0018 Score=50.25 Aligned_cols=58 Identities=17% Similarity=0.255 Sum_probs=42.1
Q ss_pred EEEEECCCCCCEEEEEe-CCCcEEEE--eCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 19 NDVVFSPLSRGAFVTGD-NEGYVAAW--DAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s-~Dg~I~iw--D~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
..++|+| +++.|+.++ .+|.+.+| |+.++. ...+..+...+...+|+|||+.|+.++.
T Consensus 251 ~~~~wSP-DG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 251 GAPAFSP-DGSRLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred CceeECC-CCCEEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 4689999 998777654 67866554 666555 4445556667889999999998877653
No 217
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.35 E-value=0.001 Score=53.58 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=51.6
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee--eEE----ecCCCCCeEEEEECCCC--CEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR--LFE----LPRFSNSVASLSYNHGG--QLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~--~~~----~~~~~~~v~~v~fspdg--~~la~~s~d 79 (114)
..+|.++.|+|++.++++.|..+|.|.+||++.+.. ... ...|..+++.+.|-++- .-|++++.|
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence 456999999997778999999999999999997654 211 12678999999996654 448888888
No 218
>PRK03629 tolB translocation protein TolB; Provisional
Probab=97.34 E-value=0.0035 Score=48.73 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=42.8
Q ss_pred cCeEEEEECCCCCCEEEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 16 VPVNDVVFSPLSRGAFVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
.++...+|+| +++.|+..+. +..|.+||+.+++.. .+......+...+|||||+.||...
T Consensus 199 ~~~~~p~wSP-DG~~la~~s~~~g~~~i~i~dl~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~ 261 (429)
T PRK03629 199 QPLMSPAWSP-DGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFAL 261 (429)
T ss_pred CceeeeEEcC-CCCEEEEEEecCCCcEEEEEECCCCCeE-EccCCCCCcCCeEECCCCCEEEEEE
Confidence 3578999999 9987765432 357899999887532 2333334456789999999888654
No 219
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.34 E-value=0.0009 Score=56.33 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=55.9
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-EecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-ELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...|.++.++- ++.++++.|+|.++++|++++++... ...+|...|..++|.|+ .+++++.|
T Consensus 174 HeG~iF~i~~s~-dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~ged 237 (967)
T KOG0974|consen 174 HEGSIFSIVTSL-DGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGED 237 (967)
T ss_pred cCCceEEEEEcc-CCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccc
Confidence 356689999998 99999999999999999999988765 55689999999999998 78888888
No 220
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=97.33 E-value=0.00061 Score=51.51 Aligned_cols=62 Identities=16% Similarity=0.137 Sum_probs=50.7
Q ss_pred eEEEEECC--CC-CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC
Q 033677 18 VNDVVFSP--LS-RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG-QLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p--~~-~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d 79 (114)
...++|.- .+ +-+++.||.-|.|++.|+.++++...+.+|...|+.+.|.|+. +++.++|.|
T Consensus 92 fytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD 157 (385)
T KOG1034|consen 92 FYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKD 157 (385)
T ss_pred eEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCC
Confidence 44555543 01 2367888899999999999999999999999999999999975 688889988
No 221
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=97.33 E-value=0.00066 Score=49.76 Aligned_cols=38 Identities=24% Similarity=0.535 Sum_probs=30.0
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR 56 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~ 56 (114)
|-++.--. ....+++|+.||++++||.++++++..+..
T Consensus 159 vH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~ 196 (325)
T KOG0649|consen 159 VHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEP 196 (325)
T ss_pred eeeeeecc-cCcceeecCCCccEEEEeccccceeEEecc
Confidence 55666533 445789999999999999999998887753
No 222
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.00092 Score=51.33 Aligned_cols=69 Identities=22% Similarity=0.293 Sum_probs=61.9
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEE-ecCCCCCeEEEEECCCCCEEEEEeCCCcccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFE-LPRFSNSVASLSYNHGGQLLAVASSCTYQEA 84 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~-~~~~~~~v~~v~fspdg~~la~~s~d~~~~~ 84 (114)
.++|.++...| .++++++|..-|.+..+|.+.+..... +++..+.|++|-..|.+.++|+++-|.|-+.
T Consensus 247 E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRI 316 (412)
T KOG3881|consen 247 ENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRI 316 (412)
T ss_pred cCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEE
Confidence 56788999999 999999999999999999999987765 7788999999999999999999999977644
No 223
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.28 E-value=0.0011 Score=52.77 Aligned_cols=55 Identities=16% Similarity=0.331 Sum_probs=48.5
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-----CCEEEE
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-----GQLLAV 75 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-----g~~la~ 75 (114)
+..++..| ++.++++++ +.|++||+++.+.+..|.+|..+|++++|-.+ |.++.+
T Consensus 147 ~~sl~is~-D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 147 VSSLCISP-DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred cceEEEcC-CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeee
Confidence 56889999 899999886 68999999999999999999999999999776 666654
No 224
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=97.28 E-value=0.001 Score=49.73 Aligned_cols=64 Identities=16% Similarity=0.246 Sum_probs=48.7
Q ss_pred ecCeEEEEECC-CCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCE-EEEEeCC
Q 033677 15 LVPVNDVVFSP-LSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQL-LAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p-~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~-la~~s~d 79 (114)
....++-+|+| ++++++++.+ |+++..||+++..+...+. .|...|..+.|+|+-++ ||+++.|
T Consensus 170 ~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDd 236 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDD 236 (370)
T ss_pred cceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCC
Confidence 34456778888 4567777764 7899999999988777775 67788999999999764 5555555
No 225
>PRK04792 tolB translocation protein TolB; Provisional
Probab=97.27 E-value=0.0028 Score=49.62 Aligned_cols=59 Identities=15% Similarity=0.201 Sum_probs=40.9
Q ss_pred CeEEEEECCCCCCEEEEEeC-CC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 17 PVNDVVFSPLSRGAFVTGDN-EG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~-Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
++....|+| +++.|+..+. ++ .|.+||+.+++.. .+..........+|+|||+.||...
T Consensus 219 ~~~~p~wSP-DG~~La~~s~~~g~~~L~~~dl~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~ 280 (448)
T PRK04792 219 PLMSPAWSP-DGRKLAYVSFENRKAEIFVQDIYTQVRE-KVTSFPGINGAPRFSPDGKKLALVL 280 (448)
T ss_pred cccCceECC-CCCEEEEEEecCCCcEEEEEECCCCCeE-EecCCCCCcCCeeECCCCCEEEEEE
Confidence 566889999 9987766543 33 6888999877642 2333333445789999999888654
No 226
>PRK04922 tolB translocation protein TolB; Provisional
Probab=97.27 E-value=0.0035 Score=48.65 Aligned_cols=59 Identities=19% Similarity=0.205 Sum_probs=42.8
Q ss_pred eEEEEECCCCCCEE-EEEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 18 VNDVVFSPLSRGAF-VTGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 18 V~~v~f~p~~~~~~-~t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
...++|+| +++.| ++.+.+| .|.+||+.+++. ..+..+.......+|+|||+.|+..+.
T Consensus 250 ~~~~~~Sp-DG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd 311 (433)
T PRK04922 250 NGAPSFSP-DGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSD 311 (433)
T ss_pred ccCceECC-CCCEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEEC
Confidence 34679999 88765 4555565 699999988764 344444445567899999999987764
No 227
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.26 E-value=0.0013 Score=36.14 Aligned_cols=34 Identities=18% Similarity=0.313 Sum_probs=29.7
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR 50 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~ 50 (114)
..+|..++|+| ...+|+.+..||.|.+|++ +++.
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcC
Confidence 45699999999 8999999999999999998 4443
No 228
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.19 E-value=0.0015 Score=50.78 Aligned_cols=66 Identities=14% Similarity=0.247 Sum_probs=50.1
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC------eeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR------RRLFELP-RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~------~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-|...|++|.|+. +++.|++|+.|..+.+|.++.. +.+.... .|...|.+++|+-..+.+.+|..+
T Consensus 54 ~H~GCiNAlqFS~-N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 54 EHTGCINALQFSH-NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhccccceeeecc-CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 4578899999999 8899999999999999998652 2222222 356789999998766667666544
No 229
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=97.18 E-value=0.0033 Score=53.09 Aligned_cols=63 Identities=16% Similarity=0.163 Sum_probs=50.7
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
++..-+-+.+ +.-++++|+.-+.|.+|+....+....+.+|.+.|.++.|+-||+++|+.|.|
T Consensus 134 ~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdD 196 (967)
T KOG0974|consen 134 YSSLIIGDSA-EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDD 196 (967)
T ss_pred EeEEEEeccC-cEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecC
Confidence 3344455566 55678999999999999987544444678999999999999999999999988
No 230
>PRK02889 tolB translocation protein TolB; Provisional
Probab=97.17 E-value=0.0032 Score=48.87 Aligned_cols=59 Identities=15% Similarity=0.203 Sum_probs=40.9
Q ss_pred eEEEEECCCCCCEEE-EEeCCCcEEEE--eCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 18 VNDVVFSPLSRGAFV-TGDNEGYVAAW--DAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 18 V~~v~f~p~~~~~~~-t~s~Dg~I~iw--D~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
+...+|+| +++.|+ +.+.+|...+| |+..+. ...+..+........|+|||+.|+..+.
T Consensus 242 ~~~~~~SP-DG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~ 303 (427)
T PRK02889 242 NSAPAWSP-DGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSD 303 (427)
T ss_pred ccceEECC-CCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEec
Confidence 45789999 987765 56778876666 454443 4445444455667899999999887653
No 231
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=97.16 E-value=0.0062 Score=47.42 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=59.0
Q ss_pred CCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 9 KDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 9 ~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+.+.+|.+-|.+++|+- .+..+++|+.+++|...|+++.+.+..+. ...+.|..+..+|....|++.+.+
T Consensus 99 ~~~~~H~SNIF~L~F~~-~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~ 170 (609)
T KOG4227|consen 99 VMEHPHRSNIFSLEFDL-ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA 170 (609)
T ss_pred eccCccccceEEEEEcc-CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC
Confidence 35567888999999998 77889999999999999999988777664 234589999999998899988877
No 232
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=97.13 E-value=0.0013 Score=52.98 Aligned_cols=71 Identities=17% Similarity=0.277 Sum_probs=55.0
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC-CCeeeEEecCCCCCeEEEEECCCC-CEEEEEeCC----Ccccc
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ-SRRRLFELPRFSNSVASLSYNHGG-QLLAVASSC----TYQEA 84 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~-~~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d----~~~~~ 84 (114)
-|..+|+++.++|+-...|++++ |-++++|.-. ....+..+..+...|++++|||.- .+||++..| .|+.-
T Consensus 396 ~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl 472 (555)
T KOG1587|consen 396 THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLL 472 (555)
T ss_pred ccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence 35788999999995445666666 8999999887 666777777788889999999964 577777655 57733
No 233
>PRK00178 tolB translocation protein TolB; Provisional
Probab=97.08 E-value=0.0072 Score=46.57 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=42.0
Q ss_pred eEEEEECCCCCCEEE-EEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 18 VNDVVFSPLSRGAFV-TGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 18 V~~v~f~p~~~~~~~-t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
+...+|+| +++.|+ +...+| .|.+||+.+++. ..+...........|+|||+.|+..+.
T Consensus 245 ~~~~~~Sp-DG~~la~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~~spDg~~i~f~s~ 306 (430)
T PRK00178 245 NGAPAWSP-DGSKLAFVLSKDGNPEIYVMDLASRQL-SRVTNHPAIDTEPFWGKDGRTLYFTSD 306 (430)
T ss_pred cCCeEECC-CCCEEEEEEccCCCceEEEEECCCCCe-EEcccCCCCcCCeEECCCCCEEEEEEC
Confidence 34689999 987665 555555 688889988764 334444455667899999998887653
No 234
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=97.00 E-value=0.0013 Score=54.99 Aligned_cols=63 Identities=13% Similarity=0.161 Sum_probs=51.9
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~ 76 (114)
|..++..+.+||++....++++-||.+.+||+-.+..++.+......+...+||+||..++..
T Consensus 394 hsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 394 HSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred cccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence 466788999999766777899999999999999988777665335567789999999988754
No 235
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.98 E-value=0.0039 Score=52.21 Aligned_cols=61 Identities=15% Similarity=0.294 Sum_probs=45.2
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-EecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-ELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
.....+++-.. + ..||.|+.+|.|++||.- +...+ .+++...||..|..+.||+++.+.+.
T Consensus 577 ~~~Fs~~aTt~-~-G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 577 KNNFSCFATTE-D-GYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred CCCceEEEecC-C-ceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 33455666665 4 589999999999999954 33333 45677899999999999998765443
No 236
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.98 E-value=0.011 Score=46.12 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=43.4
Q ss_pred CeEEEEECCCCCCEEEEEeCC---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.+....|+| +++.|+..+.+ ..|.+||+.+++... +......+....|+|||+.|+....+
T Consensus 328 ~~~~p~wSP-DG~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 328 NSSCPAWSP-DGKKIAFCSVIKGVRQICVYDLATGRDYQ-LTTSPENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred CccceeECC-CCCEEEEEEcCCCCcEEEEEECCCCCeEE-ccCCCCCccceEECCCCCEEEEEECC
Confidence 355788999 99877665443 368999999886543 33334456789999999988866543
No 237
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.96 E-value=0.0074 Score=44.78 Aligned_cols=59 Identities=12% Similarity=0.297 Sum_probs=41.2
Q ss_pred EEEEECCCCCCEEEEEe-CCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCCCCEEEEEeC
Q 033677 19 NDVVFSPLSRGAFVTGD-NEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s-~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspdg~~la~~s~ 78 (114)
..+.|+| ++++++++. .++.|.+|+++......++. ........+.|+|||++|+++..
T Consensus 231 ~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~ 293 (330)
T PRK11028 231 ADIHITP-DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ 293 (330)
T ss_pred eeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc
Confidence 3688999 998887775 47899999986533211121 12234568999999999988765
No 238
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=96.94 E-value=0.0038 Score=47.33 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=56.2
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...|.+++|+|.+..+++.|+-...+-+|.-..+..+..+.+|.+-|+-+.|.+||+.|.+|+.-
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk 271 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK 271 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC
Confidence 55688999999555689999988888898888888888888999999999999999999988763
No 239
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.93 E-value=0.0055 Score=46.69 Aligned_cols=62 Identities=18% Similarity=0.408 Sum_probs=48.6
Q ss_pred cCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.++.+++|+| ++ ..|.+..-|-.|.+|.+.+.+... ++-....+..++|+|||+++|+.+..
T Consensus 92 agls~~~WSP-dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr 154 (447)
T KOG4497|consen 92 AGLSSISWSP-DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR 154 (447)
T ss_pred CcceeeeECC-CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc
Confidence 4688999999 98 556667779999999999877543 33333456889999999999998763
No 240
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.92 E-value=0.011 Score=43.74 Aligned_cols=61 Identities=8% Similarity=0.102 Sum_probs=42.3
Q ss_pred CeEEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeEE-----ec-CCCCCeEEEEECCCCCEEEEEeC
Q 033677 17 PVNDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLFE-----LP-RFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~~-----~~-~~~~~v~~v~fspdg~~la~~s~ 78 (114)
....++++| +++.+ ++...++.|.+||+++...+.. .. ........++|+|||++++++..
T Consensus 127 ~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~ 194 (330)
T PRK11028 127 GCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE 194 (330)
T ss_pred cccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence 356788999 88766 4555679999999986332211 11 12344678999999999988765
No 241
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=96.87 E-value=0.0067 Score=46.61 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=46.7
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeC-CCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDA-QSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~-~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
...+.-+.|+| ++..|+++.-|+..++|.. ++....+.. ...+.|...+|+|+|+.|..++.
T Consensus 238 lgg~slLkwSP-dgd~lfaAt~davfrlw~e~q~wt~erw~-lgsgrvqtacWspcGsfLLf~~s 300 (445)
T KOG2139|consen 238 LGGFSLLKWSP-DGDVLFAATCDAVFRLWQENQSWTKERWI-LGSGRVQTACWSPCGSFLLFACS 300 (445)
T ss_pred CCceeeEEEcC-CCCEEEEecccceeeeehhcccceeccee-ccCCceeeeeecCCCCEEEEEEc
Confidence 34567899999 9999999999999999954 344444333 34458999999999986655443
No 242
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.82 E-value=0.016 Score=45.42 Aligned_cols=58 Identities=17% Similarity=0.226 Sum_probs=41.5
Q ss_pred EEEEECCCCCCEEE-EEeCCCc--EEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 19 NDVVFSPLSRGAFV-TGDNEGY--VAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 19 ~~v~f~p~~~~~~~-t~s~Dg~--I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
...+|+| +++.|+ +.+.+|. |.+||+.+++. ..+..+.......+|+|||+.|+..+.
T Consensus 265 ~~~~wSP-DG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSpDG~~I~f~s~ 325 (448)
T PRK04792 265 GAPRFSP-DGKKLALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHPDGKSLIFTSE 325 (448)
T ss_pred CCeeECC-CCCEEEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEEC
Confidence 4678999 887665 4566674 77789887753 344444455678899999998887664
No 243
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=96.81 E-value=0.018 Score=45.80 Aligned_cols=64 Identities=13% Similarity=0.064 Sum_probs=53.4
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..-|.++..+| ++..++.+.....|-+.|+++++....-+...+.|+...|+|+++++|.+--+
T Consensus 401 lg~I~av~vs~-dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~ 464 (668)
T COG4946 401 LGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPE 464 (668)
T ss_pred ccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCc
Confidence 55688999999 99989898888899999999997544334556789999999999999988765
No 244
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=96.78 E-value=0.02 Score=43.53 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=41.5
Q ss_pred CeEEEEECCCCCCEEE-EEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 17 PVNDVVFSPLSRGAFV-TGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~-t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
.+..++|+| +++.|+ +.+.++ .|.+||+.++.. ..+..+........|+|||+.|+..+.
T Consensus 235 ~~~~~~~sp-Dg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~ 297 (417)
T TIGR02800 235 MNGAPAFSP-DGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSD 297 (417)
T ss_pred CccceEECC-CCCEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEEC
Confidence 355689999 887654 555554 588899987653 334444444557799999998887664
No 245
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=96.73 E-value=0.0015 Score=58.40 Aligned_cols=55 Identities=16% Similarity=0.294 Sum_probs=44.3
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|...++.+++-| ..++|++||.+|.|++||++.++..+.++. +. ..++|.+|+..
T Consensus 2335 H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2335 HDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSE 2389 (2439)
T ss_pred cCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcc
Confidence 445589999999 889999999999999999999888777765 22 34567777665
No 246
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=96.68 E-value=0.0066 Score=46.70 Aligned_cols=64 Identities=19% Similarity=0.178 Sum_probs=52.4
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|++.+++|+++| |++.|+++..|..|++-.+-.--.+..|. +|..-|..++.-++ +.|++|++|
T Consensus 150 hvSml~dVavS~-D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD 214 (390)
T KOG3914|consen 150 HVSMLLDVAVSP-DDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGD 214 (390)
T ss_pred hhhhhheeeecC-CCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCC
Confidence 577899999999 99999999999999996665555555555 68889999998764 568889888
No 247
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=96.54 E-value=0.0017 Score=48.01 Aligned_cols=32 Identities=25% Similarity=0.477 Sum_probs=29.6
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDA 45 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~ 45 (114)
+|...|++++|+| +.++++.++.|+.|.+|++
T Consensus 291 yHsagvn~vAfsp-d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 291 YHSAGVNAVAFSP-DCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhcceeEEEeCC-CCchhhhccCCceEEeeec
Confidence 5678899999999 8899999999999999986
No 248
>PRK01029 tolB translocation protein TolB; Provisional
Probab=96.50 E-value=0.026 Score=43.99 Aligned_cols=60 Identities=15% Similarity=0.197 Sum_probs=39.1
Q ss_pred EEEEECCCCCCEEEEEe-CCCcEEEE--eCCC-CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 19 NDVVFSPLSRGAFVTGD-NEGYVAAW--DAQS-RRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s-~Dg~I~iw--D~~~-~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...+|+| +++.|+..+ .+|...+| ++.. +.....+......+....|||||+.||..+.+
T Consensus 284 ~~p~wSP-DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~ 347 (428)
T PRK01029 284 GNPSFSP-DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI 347 (428)
T ss_pred CCeEECC-CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcC
Confidence 4679999 998766554 46655555 4432 22234444444566788999999999876643
No 249
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=96.40 E-value=0.011 Score=43.88 Aligned_cols=51 Identities=16% Similarity=0.161 Sum_probs=40.4
Q ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-----EecCCCCCeEEEEECCCC
Q 033677 19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-----ELPRFSNSVASLSYNHGG 70 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-----~~~~~~~~v~~v~fspdg 70 (114)
.+.+|+. ....|+++..||++.+||++...... +-+.|.+.+..+.|++-|
T Consensus 207 F~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 207 FYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred eeeeecc-CcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCC
Confidence 3678888 78899999999999999999753222 223578899999999865
No 250
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0066 Score=49.18 Aligned_cols=64 Identities=14% Similarity=0.189 Sum_probs=55.0
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...|..++.+| .+..|+.|+.|+.+..+|+.-. +..+.+..|...+++|+|.+.=-+||+|+.|
T Consensus 607 ~kwiS~msihp-~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 607 SKWISSMSIHP-NGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred CeeeeeeeecC-CCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 34688999999 9989999999999999999754 4556677889999999999988899999987
No 251
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=96.38 E-value=0.085 Score=39.79 Aligned_cols=62 Identities=13% Similarity=0.223 Sum_probs=42.9
Q ss_pred CeEEEEECCCCCCEEEEE-eCCCcEEEEeCCC--Ce--eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTG-DNEGYVAAWDAQS--RR--RLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~-s~Dg~I~iwD~~~--~~--~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
....|.++| +++.|+++ ..+..|.+|+++. ++ .+..+.........++++|+|++|+++..+
T Consensus 246 ~~~~i~isp-dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~ 312 (345)
T PF10282_consen 246 APAEIAISP-DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQD 312 (345)
T ss_dssp SEEEEEE-T-TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETT
T ss_pred CceeEEEec-CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecC
Confidence 467899999 99766554 4567899999843 32 223333334558999999999999998865
No 252
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=96.31 E-value=0.021 Score=43.44 Aligned_cols=81 Identities=15% Similarity=0.122 Sum_probs=58.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC--CCCEEEEEeCC----Cccc-cc-c---c---CCCCcEE
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH--GGQLLAVASSC----TYQE-AT-V---I---EEPPQIF 94 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp--dg~~la~~s~d----~~~~-~~-~---~---~~~~~i~ 94 (114)
..++++...|.|++||..+++.+..+++++..++.+.|.. .+..+.++++| .|+. .. + + +++...|
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f 120 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF 120 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence 4688999999999999999999999999999999999976 45778888888 5661 11 1 1 3333455
Q ss_pred EEEcCcccccceeee
Q 033677 95 IIRIDDIQQQSACVG 109 (114)
Q Consensus 95 i~~~~~~~~~~~~~~ 109 (114)
+--.-.++.+..|.|
T Consensus 121 ~~ld~nck~~ii~~G 135 (376)
T KOG1188|consen 121 ICLDLNCKKNIIACG 135 (376)
T ss_pred eEeeccCcCCeEEec
Confidence 544444455555544
No 253
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.28 E-value=0.024 Score=30.95 Aligned_cols=32 Identities=16% Similarity=0.392 Sum_probs=26.7
Q ss_pred CCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcC
Q 033677 57 FSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRID 99 (114)
Q Consensus 57 ~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~ 99 (114)
....|..++|+|...+||.++.+ +.|.|++++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~-----------g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTED-----------GEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECC-----------CeEEEEECC
Confidence 35679999999999999999987 667777773
No 254
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.24 E-value=0.14 Score=39.91 Aligned_cols=60 Identities=5% Similarity=-0.001 Sum_probs=41.5
Q ss_pred CeEEEEECCCCCCE-EEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 17 PVNDVVFSPLSRGA-FVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 17 ~V~~v~f~p~~~~~-~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
++..-.|+| +++. ++..+. +..|.++|+.+++... +....+......|||||+.++....
T Consensus 189 ~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~-lt~~~g~~~~~~~SPDG~~la~~~~ 252 (419)
T PRK04043 189 LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEK-IASSQGMLVVSDVSKDGSKLLLTMA 252 (419)
T ss_pred CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEE-EecCCCcEEeeEECCCCCEEEEEEc
Confidence 466789999 8863 543333 3578899998876443 3334555667889999998876654
No 255
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=96.21 E-value=0.021 Score=43.58 Aligned_cols=61 Identities=10% Similarity=0.208 Sum_probs=46.9
Q ss_pred CeEEEEECCCCCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 17 PVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 17 ~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
.|..|.|.- +.. .|...+.|+.|.+|++...+--.++.....++.+++|||||+.+...++
T Consensus 50 ki~yieW~a-ds~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tse 111 (447)
T KOG4497|consen 50 KIVYIEWKA-DSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSE 111 (447)
T ss_pred Hhhheeeec-cceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeec
Confidence 355677877 664 4566778999999999987766677777888999999999976555444
No 256
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.20 E-value=0.024 Score=26.56 Aligned_cols=31 Identities=29% Similarity=0.355 Sum_probs=25.1
Q ss_pred eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 49 RRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 49 ~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+....+..+...|.++.|+|++.++++++.|
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d 33 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDD 33 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCC
Confidence 3445566778889999999999999988877
No 257
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.021 Score=44.36 Aligned_cols=61 Identities=15% Similarity=0.155 Sum_probs=50.2
Q ss_pred ecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 15 LVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 15 ~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
...|.+++|+| .+ .++..++-+..|++.|+++..++..+..+ .++.+++|.-|...+..|+
T Consensus 193 g~~IrdlafSp-~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaG 254 (463)
T KOG1645|consen 193 GSFIRDLAFSP-FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAG 254 (463)
T ss_pred chhhhhhccCc-cccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEe
Confidence 44578999999 55 48899999999999999999888777655 8899999998876555554
No 258
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=96.16 E-value=0.035 Score=47.48 Aligned_cols=63 Identities=10% Similarity=0.118 Sum_probs=49.3
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEE----eCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAW----DAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iw----D~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...|.++.|-+ +.+.++.+..+|.|.+. |..+.. +...-..+..|.+++||||+++||..+++
T Consensus 75 ~~~ivs~~yl~-d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E~VG~vd~GI~a~~WSPD~Ella~vT~~ 141 (928)
T PF04762_consen 75 NDKIVSFQYLA-DSESLCIALASGDIILVREDPDPDEDE-IEIVGSVDSGILAASWSPDEELLALVTGE 141 (928)
T ss_pred CCcEEEEEecc-CCCcEEEEECCceEEEEEccCCCCCce-eEEEEEEcCcEEEEEECCCcCEEEEEeCC
Confidence 34688999999 88889999999999998 554433 22222446789999999999999998866
No 259
>PRK04043 tolB translocation protein TolB; Provisional
Probab=96.13 E-value=0.11 Score=40.51 Aligned_cols=72 Identities=11% Similarity=0.181 Sum_probs=44.9
Q ss_pred eEEEEECCCCCCEE-EEEeCC--CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEE
Q 033677 18 VNDVVFSPLSRGAF-VTGDNE--GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIF 94 (114)
Q Consensus 18 V~~v~f~p~~~~~~-~t~s~D--g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~ 94 (114)
.....|+| ++..+ ++.+.+ ..|.++|+.++. ...+...........|+|||+.|+..+.. .+...||
T Consensus 235 ~~~~~~SP-DG~~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr--------~g~~~Iy 304 (419)
T PRK04043 235 LVVSDVSK-DGSKLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDR--------LGYPNIF 304 (419)
T ss_pred EEeeEECC-CCCEEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECC--------CCCceEE
Confidence 44577999 88654 444444 467778987775 33444333333456899999988887743 1234566
Q ss_pred EEEcC
Q 033677 95 IIRID 99 (114)
Q Consensus 95 i~~~~ 99 (114)
+.++.
T Consensus 305 ~~dl~ 309 (419)
T PRK04043 305 MKKLN 309 (419)
T ss_pred EEECC
Confidence 66554
No 260
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=96.11 E-value=0.04 Score=44.65 Aligned_cols=61 Identities=13% Similarity=0.222 Sum_probs=46.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCC--CEEEEE
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGG--QLLAVA 76 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg--~~la~~ 76 (114)
.-.|++|.|.. ++-.+++|..+|.+.+||+++.+.+.... ...-+|..+.|.+.+ ..+++.
T Consensus 228 ~~svTal~F~d-~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 228 APSVTALKFRD-DGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred cCcceEEEecC-CceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence 33599999998 88889999999999999999987665332 335689999997763 344433
No 261
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.038 Score=42.66 Aligned_cols=62 Identities=16% Similarity=0.235 Sum_probs=51.7
Q ss_pred CeEEEEECCCC--CCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLS--RGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~--~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.++++.|-| . ...|+++..-+.+++||.+.+ +.+.++.....+++++..-|+|+.+.+|..-
T Consensus 204 W~tdi~Fl~-g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~ 268 (412)
T KOG3881|consen 204 WITDIRFLE-GSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTK 268 (412)
T ss_pred eeccceecC-CCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEeccc
Confidence 456899998 6 689999999999999999965 5566676678899999999999988877653
No 262
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.89 E-value=0.14 Score=39.29 Aligned_cols=88 Identities=13% Similarity=0.108 Sum_probs=56.4
Q ss_pred ECCCCCCEEEEEeC----------CCcEEEEeCCCCeeeEEecCCC-------CCeEEEEECCCCCEEEEEeCC-C----
Q 033677 23 FSPLSRGAFVTGDN----------EGYVAAWDAQSRRRLFELPRFS-------NSVASLSYNHGGQLLAVASSC-T---- 80 (114)
Q Consensus 23 f~p~~~~~~~t~s~----------Dg~I~iwD~~~~~~~~~~~~~~-------~~v~~v~fspdg~~la~~s~d-~---- 80 (114)
++| ++..|+.+.. +..|.+||..+.+.+..+.-.. .....++++|||++|.++..+ +
T Consensus 53 ~sp-Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VAS-DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECC-CCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEE
Confidence 899 8876655554 7899999999999887776322 223478999999988876644 1
Q ss_pred -ccc-----ccccCCCCcEEEEEcCcccccceeeecC
Q 033677 81 -YQE-----ATVIEEPPQIFIIRIDDIQQQSACVGSS 111 (114)
Q Consensus 81 -~~~-----~~~~~~~~~i~i~~~~~~~~~~~~~~~~ 111 (114)
.+. -.|...+....+....+.....-|.+++
T Consensus 132 VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~ 168 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGS 168 (352)
T ss_pred EEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCc
Confidence 111 1223334444555555555555566554
No 263
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.87 E-value=0.038 Score=43.31 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=46.4
Q ss_pred EEEECCCCCCE-EEEEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEE
Q 033677 20 DVVFSPLSRGA-FVTGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFII 96 (114)
Q Consensus 20 ~v~f~p~~~~~-~~t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~ 96 (114)
.-+|+| +++. +++...|| .|.+.|+..+. +..+......-+.=.|+|||+.++..+.. .+.++||++
T Consensus 242 ~P~fsp-DG~~l~f~~~rdg~~~iy~~dl~~~~-~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr--------~G~p~I~~~ 311 (425)
T COG0823 242 APAFSP-DGSKLAFSSSRDGSPDIYLMDLDGKN-LPRLTNGFGINTSPSWSPDGSKIVFTSDR--------GGRPQIYLY 311 (425)
T ss_pred CccCCC-CCCEEEEEECCCCCccEEEEcCCCCc-ceecccCCccccCccCCCCCCEEEEEeCC--------CCCcceEEE
Confidence 457899 8854 56666677 45566887766 33344333333466899999999988755 444567776
Q ss_pred EcCc
Q 033677 97 RIDD 100 (114)
Q Consensus 97 ~~~~ 100 (114)
+.+.
T Consensus 312 ~~~g 315 (425)
T COG0823 312 DLEG 315 (425)
T ss_pred CCCC
Confidence 6644
No 264
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=95.87 E-value=0.027 Score=48.55 Aligned_cols=61 Identities=13% Similarity=0.307 Sum_probs=47.4
Q ss_pred eEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeee--EEecCC---CCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRL--FELPRF---SNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~--~~~~~~---~~~v~~v~fspdg~~la~~s~d 79 (114)
|..+.+.+ .+ ..|++|+.||.|++||++..... .....+ .+.++++..+++..++|+|+..
T Consensus 1259 Iv~~slq~-~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q 1325 (1387)
T KOG1517|consen 1259 IVHLSLQR-QGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSAQ 1325 (1387)
T ss_pred ceeEEeec-CCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCcc
Confidence 99999998 66 46999999999999999974211 122222 3359999999999999999864
No 265
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=95.73 E-value=0.016 Score=44.31 Aligned_cols=66 Identities=23% Similarity=0.398 Sum_probs=53.9
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-RLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|..++.+++|.| .+.++++|+.|-.+.+||+--++ ....+++|...|..+.+-+--+.+.++..|
T Consensus 195 ~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~ed 261 (404)
T KOG1409|consen 195 GHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGED 261 (404)
T ss_pred CcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCC
Confidence 4578899999999 88999999999999999997543 345677888888888887766777777766
No 266
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=95.71 E-value=0.012 Score=45.05 Aligned_cols=64 Identities=13% Similarity=0.167 Sum_probs=42.8
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---eEEecCCCCCeEEEEEC-----CCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---LFELPRFSNSVASLSYN-----HGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---~~~~~~~~~~v~~v~fs-----pdg~~la~~s~d 79 (114)
.|.+.|+++..-..+++.|++.+.+|+|++||.+.-++ +.++.+| |+..++. +....+++++.|
T Consensus 296 yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGH---vN~~a~l~~~v~~eeg~I~s~GdD 367 (425)
T KOG2695|consen 296 YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGH---VNLSAYLPAHVKEEEGSIFSVGDD 367 (425)
T ss_pred EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecc---cccccccccccccccceEEEccCe
Confidence 45556777766553557889999999999999998777 6666666 3333333 333455555555
No 267
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.71 E-value=0.059 Score=43.66 Aligned_cols=62 Identities=15% Similarity=0.159 Sum_probs=53.4
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|..+.|-.+.++++++|++||...+|+-.++..+..+.+....|+++.=.|..-.+|++..|
T Consensus 626 IKeanFlGqrgeyiasgSddgr~fiwek~tg~i~av~~gdssivnciqghP~~~~latSgiD 687 (758)
T KOG1310|consen 626 IKEANFLGQRGEYIASGSDDGRFFIWEKLTGSILAVIHGDSSIVNCIQGHPRCPTLATSGID 687 (758)
T ss_pred cccccccccCCCeeeEecCCCceEEeecCCcceEEEeeCchhheeeccCCCCCceeeeccCc
Confidence 45556655467999999999999999999999888888888889999999988889998888
No 268
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=95.65 E-value=0.28 Score=37.64 Aligned_cols=57 Identities=18% Similarity=0.309 Sum_probs=43.7
Q ss_pred EEEEECCCCCCEEEEEe----------CCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC-EEEEEe
Q 033677 19 NDVVFSPLSRGAFVTGD----------NEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ-LLAVAS 77 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s----------~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~-~la~~s 77 (114)
.-++++| +++.++... ..+.|-++|..+++.+..+. ....+..++|+|||+ +|.+..
T Consensus 251 q~ia~~~-dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~-vG~~~~~iavS~Dgkp~lyvtn 318 (352)
T TIGR02658 251 QQVAYHR-ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE-LGHEIDSINVSQDAKPLLYALS 318 (352)
T ss_pred eeEEEcC-CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe-CCCceeeEEECCCCCeEEEEeC
Confidence 3499999 887666642 12479999999999888775 356788999999999 666555
No 269
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=95.64 E-value=0.0082 Score=50.70 Aligned_cols=63 Identities=14% Similarity=0.274 Sum_probs=50.9
Q ss_pred ecCe--EEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 15 LVPV--NDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 15 ~~~V--~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
.+|| ++++||| ..-.|+.|-.-|.+.+|...+.+.-.....|+.+|..+.|||+|..|.++..
T Consensus 57 t~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~ 121 (1416)
T KOG3617|consen 57 TYPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDN 121 (1416)
T ss_pred ccceehhhhccCh-HHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCC
Confidence 4454 5799999 7777888988999999998877644444578999999999999999987643
No 270
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.03 Score=45.61 Aligned_cols=51 Identities=14% Similarity=0.301 Sum_probs=42.2
Q ss_pred CeE-EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECC
Q 033677 17 PVN-DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNH 68 (114)
Q Consensus 17 ~V~-~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fsp 68 (114)
+++ +++|.| |+++|+.|-.||+|++.|+.++..+..+. .....|+.+-|+|
T Consensus 63 ~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 63 NVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred ccceeeeecC-CCCEEEEEecCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 344 999999 99999999999999999999988776643 3356788888874
No 271
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=95.53 E-value=0.18 Score=38.16 Aligned_cols=58 Identities=24% Similarity=0.260 Sum_probs=42.6
Q ss_pred EECCCCCC-EEEE-EeCCCcEEEEeCCCCee--eEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 22 VFSPLSRG-AFVT-GDNEGYVAAWDAQSRRR--LFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 22 ~f~p~~~~-~~~t-~s~Dg~I~iwD~~~~~~--~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
++.|..+. +|+. |-.-|.|++-|+...+. ...+.+|...|.+++++.+|.++|++|.-
T Consensus 141 ~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStk 202 (346)
T KOG2111|consen 141 SLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTK 202 (346)
T ss_pred eecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccC
Confidence 34452233 3433 33458999999876543 35678999999999999999999999976
No 272
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.50 E-value=0.041 Score=45.31 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=46.8
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee---EEe---cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL---FEL---PRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~---~~~---~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.+..++.++ +..+++.|+..|.|.++-+..+..- ..- +.|...|++++|++|+..+.+|..-
T Consensus 78 ~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~ 145 (726)
T KOG3621|consen 78 ITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQ 145 (726)
T ss_pred eEEEEEecc-hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCC
Confidence 466778898 7788899999999999988764211 111 2357889999999999999887644
No 273
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.47 E-value=0.052 Score=46.34 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=60.0
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC------Ccccccc
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC------TYQEATV 86 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d------~~~~~~~ 86 (114)
....++++|+- ..+.|+.|+..|.|+++++.+|.-......|..+|+.+.=+.||..+.+.++- .|..+..
T Consensus 1101 ~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1101 TALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASST 1177 (1516)
T ss_pred ccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccc
Confidence 35678999999 88999999999999999999998888888999999999999999877665443 5876654
No 274
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=95.41 E-value=0.09 Score=39.62 Aligned_cols=58 Identities=29% Similarity=0.383 Sum_probs=46.6
Q ss_pred EEECCCCCCEEEEE-----eCCCcEEEEeCC-CCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 21 VVFSPLSRGAFVTG-----DNEGYVAAWDAQ-SRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 21 v~f~p~~~~~~~t~-----s~Dg~I~iwD~~-~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-.|+| ++++|++. ...|.|-+||.. +-+.+.++..+.--...+.+.|||+.|+++-.-
T Consensus 56 g~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGG 119 (305)
T PF07433_consen 56 GVFSP-DGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGG 119 (305)
T ss_pred EEEcC-CCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCC
Confidence 47899 99888774 335899999999 567777888777778899999999888877654
No 275
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=95.32 E-value=0.01 Score=45.39 Aligned_cols=60 Identities=15% Similarity=0.288 Sum_probs=43.2
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-ee---EEec------------CCCCCeEEEEECCCCCEEEEE
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-RL---FELP------------RFSNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~~---~~~~------------~~~~~v~~v~fspdg~~la~~ 76 (114)
.|++..|||..-++|+-.+..|+|++.|++... |. +.+. ..-..|..+.|+++|+||++=
T Consensus 215 VITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsR 290 (433)
T KOG1354|consen 215 VITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSR 290 (433)
T ss_pred HHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEe
Confidence 367889999434889999999999999998431 11 1111 112568899999999999853
No 276
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.26 E-value=0.091 Score=42.57 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=46.4
Q ss_pred eEEEEECCCCCCEEEEEeCC-----------CcEEEEeCCCCeeeEEecC--CCCCe-EEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNE-----------GYVAAWDAQSRRRLFELPR--FSNSV-ASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~D-----------g~I~iwD~~~~~~~~~~~~--~~~~v-~~v~fspdg~~la~~s~d 79 (114)
|.-+.|+| ..++|+|-+.. ..+.+||+++|...+.|.. ...++ .-..||.|++++|--..+
T Consensus 252 Vq~idfSP-~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~ 326 (698)
T KOG2314|consen 252 VQFIDFSP-NEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN 326 (698)
T ss_pred ceeeecCC-ccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc
Confidence 56889999 88888886542 3789999999988887765 23333 257999999999977665
No 277
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=95.19 E-value=0.56 Score=35.91 Aligned_cols=61 Identities=16% Similarity=0.197 Sum_probs=42.9
Q ss_pred CeEEEEECCCCCCEEEEEeC-CCcEEEEeCCCC-eeeEEecC---------CCCCeEEEEECCCCCEEEEEeC
Q 033677 17 PVNDVVFSPLSRGAFVTGDN-EGYVAAWDAQSR-RRLFELPR---------FSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~-Dg~I~iwD~~~~-~~~~~~~~---------~~~~v~~v~fspdg~~la~~s~ 78 (114)
...-|.||| ++.......+ +++|.+|..+.. ..+..++. -.....+|..+|||++|.++-.
T Consensus 192 GPRHi~FHp-n~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNR 263 (346)
T COG2706 192 GPRHIVFHP-NGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNR 263 (346)
T ss_pred CcceEEEcC-CCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecC
Confidence 345689999 8887666555 899999998873 22333331 1345678999999998876543
No 278
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.12 E-value=0.062 Score=43.50 Aligned_cols=62 Identities=16% Similarity=0.188 Sum_probs=43.3
Q ss_pred CeEEEEECCCCCCEEEEE---eCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTG---DNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~---s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-.|.|.|+| .|+.++.+ |..|.+.++|..-..+...-.......+.+.|.|.|+|+.++++-
T Consensus 494 ~~N~vfwsP-kG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~ss~ 558 (698)
T KOG2314|consen 494 FANTVFWSP-KGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTSSSS 558 (698)
T ss_pred ccceEEEcC-CCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECCCCCEEEEeeeh
Confidence 367899999 88876654 447899999987533222111222346789999999999887753
No 279
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=95.00 E-value=0.023 Score=45.09 Aligned_cols=66 Identities=20% Similarity=0.229 Sum_probs=52.8
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCC--CCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHG--GQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspd--g~~la~~s~d 79 (114)
.|...|+.|.|+. .+..+++|+.|..|.+||-..+.....+. +|...|--.+|-|. .+.++..+.|
T Consensus 140 ~H~GcVntV~FN~-~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d 208 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQ-RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD 208 (559)
T ss_pred CCCCccceeeecc-cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecccc
Confidence 4567899999999 99999999999999999998887766665 67777777778773 3456666666
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.97 E-value=0.39 Score=34.10 Aligned_cols=58 Identities=14% Similarity=0.219 Sum_probs=44.0
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEE-CCCCCEEEEEe
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSY-NHGGQLLAVAS 77 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~f-spdg~~la~~s 77 (114)
.-.+++.. +++++++....+.|.++|.+ ++.+..+......+++++| .|+.+.|.+.+
T Consensus 186 pDG~~vD~-~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 186 PDGLAVDS-DGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEBT-TS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCcceEcC-CCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 56799999 89988888889999999988 7777767644468999999 46766555443
No 281
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=94.95 E-value=0.19 Score=40.52 Aligned_cols=61 Identities=23% Similarity=0.373 Sum_probs=47.2
Q ss_pred ecCeEEEEECCCCCCEEEE--EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVT--GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t--~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.+||.++.|+| ++..|++ |-.-..+.++|++.. .+..+ ..++=+++-|||.|++++.++-+
T Consensus 270 ~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr~~-~v~df--~egpRN~~~fnp~g~ii~lAGFG 332 (566)
T KOG2315|consen 270 EGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLRGK-PVFDF--PEGPRNTAFFNPHGNIILLAGFG 332 (566)
T ss_pred CCCceEEEECC-CCCEEEEEEecccceEEEEcCCCC-EeEeC--CCCCccceEECCCCCEEEEeecC
Confidence 57899999999 8877655 555679999999843 44444 35666789999999999887755
No 282
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.064 Score=46.22 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=42.6
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEE
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASL 64 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v 64 (114)
...+||++++|+. ++.+++.|-.+|.|.+||...++.++.+..+..|.+++
T Consensus 128 ~v~~~Vtsvafn~-dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~v 178 (1206)
T KOG2079|consen 128 RVQGPVTSVAFNQ-DGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGV 178 (1206)
T ss_pred ccCCcceeeEecC-CCceeccccCCCcEEEEEccCCcceeeeeecCCccceE
Confidence 3368899999999 99999999999999999999988888877665555444
No 283
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.90 E-value=0.29 Score=42.53 Aligned_cols=61 Identities=13% Similarity=0.141 Sum_probs=45.1
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-------------CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-------------RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-------------~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..+|++.| +++++++-+.++.|++||..++....... ........|+++++|+++++-+.+
T Consensus 806 P~Gvavd~-dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~N 879 (1057)
T PLN02919 806 PLGVLCAK-DGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNN 879 (1057)
T ss_pred CceeeEeC-CCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCC
Confidence 45899999 88899999999999999998876442221 112356789999999977655444
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=94.90 E-value=0.03 Score=43.21 Aligned_cols=37 Identities=16% Similarity=0.272 Sum_probs=30.2
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP 55 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~ 55 (114)
=|..++..+ +..|+++|.|+++++||+++++++.++.
T Consensus 196 FVS~isl~~--~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 196 FVSTISLTD--NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred heeeeeecc--CceeeecCCCCcEEEEecccCCcccccc
Confidence 356777776 3568999999999999999999887664
No 285
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.82 E-value=0.33 Score=37.14 Aligned_cols=80 Identities=14% Similarity=0.183 Sum_probs=48.0
Q ss_pred CeEEEEECCCCCCEEEEE-eCCC----cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCC
Q 033677 17 PVNDVVFSPLSRGAFVTG-DNEG----YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPP 91 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~-s~Dg----~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~ 91 (114)
.+...+++| ++++++-+ +..| .|+++|+.+++.+........ ...+.|.+||+.|.....+.-.++.....+.
T Consensus 125 ~~~~~~~Sp-dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~-~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 125 SLGGFSVSP-DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPK-FSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEEETT-TSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEE-SEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred EeeeeeECC-CCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccc-cceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence 345788999 99876643 3344 699999999976543211111 1239999999988776655322211223344
Q ss_pred cEEEEEc
Q 033677 92 QIFIIRI 98 (114)
Q Consensus 92 ~i~i~~~ 98 (114)
.||.|.+
T Consensus 203 ~v~~~~~ 209 (414)
T PF02897_consen 203 QVYRHKL 209 (414)
T ss_dssp EEEEEET
T ss_pred EEEEEEC
Confidence 5555555
No 286
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=94.72 E-value=0.26 Score=35.04 Aligned_cols=62 Identities=23% Similarity=0.246 Sum_probs=42.1
Q ss_pred ecCeEEEEECCCCCCEEEEEeCC--------CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNE--------GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~D--------g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
....|++++.| +++++++.... |.|..++.. ++..... ..-...+.|+|+||++.|.++.+.
T Consensus 85 ~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 85 FNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp TEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEETT
T ss_pred cCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecccc
Confidence 45689999999 99988886654 557777777 4433333 234557899999999977765543
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.67 E-value=0.027 Score=45.74 Aligned_cols=56 Identities=9% Similarity=0.278 Sum_probs=45.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-------eeeEEecCCCCCeEEEEECCCCCEEEEEeCC--Ccc
Q 033677 27 SRGAFVTGDNEGYVAAWDAQSR-------RRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQ 82 (114)
Q Consensus 27 ~~~~~~t~s~Dg~I~iwD~~~~-------~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~ 82 (114)
+.+-|++++.|.+|++|.++.. .|..+++.|..+|..+.|-.+-+++|++.+- .|+
T Consensus 746 NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWD 810 (1034)
T KOG4190|consen 746 NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWD 810 (1034)
T ss_pred cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeec
Confidence 3467999999999999998752 3666778999999999999988888876554 677
No 288
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.57 E-value=0.12 Score=40.76 Aligned_cols=49 Identities=10% Similarity=0.247 Sum_probs=32.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|.+|...+.+ .|.+||..+++.+..+.-. +|..|.||++|+++|..+.+
T Consensus 117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~ 165 (443)
T PF04053_consen 117 GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD 165 (443)
T ss_dssp SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-
T ss_pred CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC
Confidence 3456555544 7999999999988887633 38999999999999999876
No 289
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=94.40 E-value=0.026 Score=44.81 Aligned_cols=61 Identities=21% Similarity=0.252 Sum_probs=49.6
Q ss_pred eEEEE-ECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVV-FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~-f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|.++- |.| ..+++++|++=|.|-|||-.+++.+..+.+....|+++.=.|---+||+++-|
T Consensus 396 VKgVNFfGP-rsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSGid 457 (559)
T KOG1334|consen 396 VKGVNFFGP-RSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSGID 457 (559)
T ss_pred cceeeeccC-ccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccCCc
Confidence 44444 578 77899999988999999999999888887777788899878876788887766
No 290
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=94.36 E-value=0.12 Score=41.73 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=30.0
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR 48 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~ 48 (114)
+....++.++||| ++..|++|+..|.+.+||+.-.
T Consensus 297 ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 297 KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecC
Confidence 3456678899999 9999999999999999998643
No 291
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=0.31 Score=42.37 Aligned_cols=63 Identities=16% Similarity=0.170 Sum_probs=46.8
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe---eeEEecCCCCC--eEEEEECCCCC-EEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR---RLFELPRFSNS--VASLSYNHGGQ-LLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~---~~~~~~~~~~~--v~~v~fspdg~-~la~~s~d 79 (114)
.|++++-+...+++|++|-.||.|++||.+... .+..++.|... |..+.+.+.|. .|++|+.+
T Consensus 1210 ~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1210 LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred cceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccC
Confidence 466666554235899999999999999998743 34455666655 99999998774 47788877
No 292
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=94.20 E-value=0.22 Score=38.24 Aligned_cols=53 Identities=25% Similarity=0.322 Sum_probs=38.1
Q ss_pred CEE-EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCc
Q 033677 29 GAF-VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTY 81 (114)
Q Consensus 29 ~~~-~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~ 81 (114)
+++ ++-..+|.|.+.|..+.+.+..+......-..+.|+|||+++.+++.|.+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~ 59 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGT 59 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCe
Confidence 455 56667899999999999988888755444456789999999988887743
No 293
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=94.04 E-value=0.04 Score=41.92 Aligned_cols=60 Identities=18% Similarity=0.368 Sum_probs=42.6
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-e-----eEEe----------cCCCCCeEEEEECCCCCEEEEE
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-R-----LFEL----------PRFSNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~-----~~~~----------~~~~~~v~~v~fspdg~~la~~ 76 (114)
.|++..|+|..-+.|+-.+..|.|++-|++... | +... ...-..|..+.|+|+|+++++-
T Consensus 223 VItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsR 298 (460)
T COG5170 223 VITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSR 298 (460)
T ss_pred HHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEe
Confidence 467788999444788888899999999998421 1 1111 1123578899999999998753
No 294
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.02 E-value=0.22 Score=41.83 Aligned_cols=51 Identities=8% Similarity=0.147 Sum_probs=39.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCC-----CCEEEEEeC
Q 033677 27 SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHG-----GQLLAVASS 78 (114)
Q Consensus 27 ~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspd-----g~~la~~s~ 78 (114)
.+..+++|+.||.|.+-.+-+.....++ ....++.+|+++|| .+.+++|+.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ 137 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGM 137 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCc
Confidence 4789999999999999888777655544 45688999999998 455666553
No 295
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=94.01 E-value=0.21 Score=37.66 Aligned_cols=58 Identities=17% Similarity=0.250 Sum_probs=43.9
Q ss_pred CCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC-CeeeEEecCCCCCeEEEEECCC
Q 033677 11 GRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS-RRRLFELPRFSNSVASLSYNHG 69 (114)
Q Consensus 11 ~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~-~~~~~~~~~~~~~v~~v~fspd 69 (114)
+.-|...|.+|.-+|.....|+||+-|-.|++||.++ ++.+..- ...+.|.-++++|.
T Consensus 206 ~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~-~v~GGVWRi~~~p~ 264 (339)
T KOG0280|consen 206 SKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKA-KVGGGVWRIKHHPE 264 (339)
T ss_pred ceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccC-ccccceEEEEecch
Confidence 3456677888888874567999999999999999995 4444322 34577899999884
No 296
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.98 E-value=0.11 Score=41.91 Aligned_cols=50 Identities=20% Similarity=0.400 Sum_probs=39.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
...|++||.+|.|++||.-.......+++...+|+-|..+.||+++...+
T Consensus 441 sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc 490 (644)
T KOG2395|consen 441 SGYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC 490 (644)
T ss_pred CceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec
Confidence 35899999999999999844343345678899999999999999776433
No 297
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.92 E-value=0.42 Score=41.80 Aligned_cols=61 Identities=16% Similarity=0.204 Sum_probs=49.5
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|.++.|.. +.+.++.+..+|.|.+-|..+.. +...-.....|.+++||||++++|..+..
T Consensus 70 ~i~s~~fl~-d~~~i~v~~~~G~iilvd~et~~-~eivg~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 70 EIVSVQFLA-DTNSICVITALGDIILVDPETLE-LEIVGNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred ceEEEEEec-ccceEEEEecCCcEEEEcccccc-eeeeeeccCceEEEeecCCCcEEEEEeCC
Confidence 588999998 88888899999999999887654 22233456789999999999999988774
No 298
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.67 E-value=0.2 Score=42.03 Aligned_cols=64 Identities=20% Similarity=0.275 Sum_probs=50.9
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe--cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL--PRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~--~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
...|..+.|+. .++.|-|...+|.|.+|-+-.+.=.... ......|.+++|+.||..+++...|
T Consensus 71 ~~sV~vvTWNe-~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeD 136 (1189)
T KOG2041|consen 71 NASVMVVTWNE-NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYED 136 (1189)
T ss_pred cceEEEEEecc-ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEcc
Confidence 66789999998 7888989999999999998776522222 1335678899999999999888777
No 299
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=93.63 E-value=1.2 Score=28.72 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=39.3
Q ss_pred eEEEEECCC--CC-CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPL--SR-GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~--~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
|+++++... ++ +.|++|+.|..|++|+-. +.+.++. ....|+.++-... ..||.+...
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~N 62 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT-ETDKVTSLCSLGG-GRFAYALAN 62 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe-cccceEEEEEcCC-CEEEEEecC
Confidence 556665432 33 689999999999999754 4555554 4566777776655 467777665
No 300
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=93.62 E-value=0.54 Score=34.40 Aligned_cols=61 Identities=13% Similarity=0.266 Sum_probs=35.5
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCC---------CCeEEEEECCCCCEEEEE
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS---------NSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~---------~~v~~v~fspdg~~la~~ 76 (114)
...+.+|+++|.++++++....+..|..+| .+++.+..+.-.. .+.-.|+|.++|+++.++
T Consensus 170 ~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 170 VRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred eccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 445789999995567777777788999999 4565554443221 356799999999866544
No 301
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.40 E-value=0.37 Score=36.45 Aligned_cols=56 Identities=25% Similarity=0.422 Sum_probs=43.4
Q ss_pred EECCCCCCEEEEEeCC-----CcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 22 VFSPLSRGAFVTGDNE-----GYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 22 ~f~p~~~~~~~t~s~D-----g~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
.|+| ++.+|+..=.| |.|-+||.+.+ +.+-++..+.--...+.|.+||+.|+++..
T Consensus 120 vfs~-dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 120 VFSP-DGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred ccCC-CCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 5788 88877664333 79999999854 445566777777889999999999998776
No 302
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=93.30 E-value=0.12 Score=43.33 Aligned_cols=66 Identities=23% Similarity=0.461 Sum_probs=49.4
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECC-CCCEEEEEeCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNH-GGQLLAVASSC 79 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d 79 (114)
|...|+++-|+|+....+++++.|-.+..||+++. ..+..+..-....+.|+|+- ++..+|+.-+.
T Consensus 113 hsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~ 180 (1081)
T KOG0309|consen 113 HSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGN 180 (1081)
T ss_pred CccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCC
Confidence 45679999999955588999999999999999985 34444544455667888875 66777765543
No 303
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.08 E-value=0.72 Score=24.75 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=24.5
Q ss_pred CeEEEEECCCCC--CEEEEEeCCCcEEEEeCCC
Q 033677 17 PVNDVVFSPLSR--GAFVTGDNEGYVAAWDAQS 47 (114)
Q Consensus 17 ~V~~v~f~p~~~--~~~~t~s~Dg~I~iwD~~~ 47 (114)
+|-++.|+|... .+|+-+-..|.|.++|+++
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999998333 4777777789999999995
No 304
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=92.98 E-value=1.1 Score=36.12 Aligned_cols=59 Identities=15% Similarity=0.232 Sum_probs=47.5
Q ss_pred eEEEEECCCCCCEEEEEeCCC-cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEG-YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg-~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
|....+.- +++-++.|..|| .+.+||.++++ ++.+...-+.|-+++.+|||+.++++-.
T Consensus 362 VrY~r~~~-~~e~~vigt~dgD~l~iyd~~~~e-~kr~e~~lg~I~av~vs~dGK~~vvaNd 421 (668)
T COG4946 362 VRYRRIQV-DPEGDVIGTNDGDKLGIYDKDGGE-VKRIEKDLGNIEAVKVSPDGKKVVVAND 421 (668)
T ss_pred eEEEEEcc-CCcceEEeccCCceEEEEecCCce-EEEeeCCccceEEEEEcCCCcEEEEEcC
Confidence 55566666 667889999999 89999999876 5556677788999999999998887653
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=92.64 E-value=0.085 Score=39.16 Aligned_cols=34 Identities=26% Similarity=0.487 Sum_probs=29.8
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS 47 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~ 47 (114)
|-.+++.|-|||+++..|++++.||.+-.||..+
T Consensus 222 hk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 222 HKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 4567899999997778999999999999999875
No 306
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=92.42 E-value=0.41 Score=41.13 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=44.0
Q ss_pred eEEEEECCCCCCEEEEEeC---C---CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 18 VNDVVFSPLSRGAFVTGDN---E---GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~---D---g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
-..|+|-. |+++|++.+. + ..|++|+.+ |..........+.-.+++|.|.|.++|+.-.
T Consensus 212 ~~~ISWRG-DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 212 RVRISWRG-DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred ceEEEECC-CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 45789999 9999998775 3 478999865 6544444444455568999999999998765
No 307
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.39 E-value=1.3 Score=33.45 Aligned_cols=59 Identities=19% Similarity=0.250 Sum_probs=41.4
Q ss_pred eEEEEECCCCCCEEEEEeC----CCcEEEEeCCCC--e--eeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 18 VNDVVFSPLSRGAFVTGDN----EGYVAAWDAQSR--R--RLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~----Dg~I~iwD~~~~--~--~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
...|+++| ++++|++... +|.|..|++... + .+............++++|++++|+++.
T Consensus 39 Ps~l~~~~-~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van 105 (345)
T PF10282_consen 39 PSWLAVSP-DGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN 105 (345)
T ss_dssp ECCEEE-T-TSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE
T ss_pred CceEEEEe-CCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE
Confidence 45688999 8888888766 568888887764 2 2233333455667899999999888765
No 308
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.21 E-value=2.3 Score=37.17 Aligned_cols=61 Identities=13% Similarity=0.131 Sum_probs=41.6
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC---------------CCCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR---------------FSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~---------------~~~~v~~v~fspdg~~la~~s~d 79 (114)
..+|+|+|.++.++++.+.++.|.+||..++... .+.+ .....+.|+|+|+|..|.++..+
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~ 760 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE 760 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Confidence 4589999933456777777899999999876532 2211 11345679999999866666554
No 309
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=91.91 E-value=1.7 Score=33.37 Aligned_cols=63 Identities=19% Similarity=0.227 Sum_probs=42.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCC---CcEEEEeCCC--CeeeE--EecCCCCCeEEEEECCCCCEEEEEe
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNE---GYVAAWDAQS--RRRLF--ELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~D---g~I~iwD~~~--~~~~~--~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
....++-|+|+| +++.|.++..+ |.|-.|.++. ++.-. .......+...++++++|++++++.
T Consensus 38 ~~~nptyl~~~~-~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~An 107 (346)
T COG2706 38 ELGNPTYLAVNP-DQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVAN 107 (346)
T ss_pred ccCCCceEEECC-CCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEE
Confidence 355577899999 88777776654 6677665553 54222 2223345558999999999888764
No 310
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.88 E-value=1.4 Score=31.57 Aligned_cols=51 Identities=14% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEe-------c-------CCCCCeEEEEECCCCCEEEEEe
Q 033677 27 SRGAFVTGDNEGYVAAWDAQSRRRLFEL-------P-------RFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 27 ~~~~~~t~s~Dg~I~iwD~~~~~~~~~~-------~-------~~~~~v~~v~fspdg~~la~~s 77 (114)
.++.+++-..+|.+++||+.+++.+..- . .....|+.+.++.+|..+++-+
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls 85 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS 85 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe
Confidence 4578999999999999999998765432 1 1345788999999998776543
No 311
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.85 E-value=0.61 Score=23.60 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=16.9
Q ss_pred CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 56 RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 56 ~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.....-...+|||||+.|+..+..
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~ 29 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNR 29 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEEC
T ss_pred cCCccccCEEEecCCCEEEEEecC
Confidence 344556788999999999887744
No 312
>TIGR02781 VirB9 P-type conjugative transfer protein VirB9. The VirB9 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in a type IV secretion system. VirB9 is a homolog of the F-type conjugative transfer system TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the Ti system TrbG protein.
Probab=91.80 E-value=0.87 Score=33.11 Aligned_cols=63 Identities=6% Similarity=0.107 Sum_probs=46.1
Q ss_pred EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC--CcccccccCCCCcEEEEEcCc
Q 033677 34 GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVIEEPPQIFIIRIDD 100 (114)
Q Consensus 34 ~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~~~~~~i~i~~~~~ 100 (114)
+..|..|+........ +..+....+.++.|.|.|+.++...+.+| .|+.... .+.|||++...
T Consensus 24 ~~~D~Ri~~~~Y~p~~-v~~V~~~~g~~T~I~f~~gE~I~~v~~GDt~~W~v~~~---~n~i~IKP~~~ 88 (243)
T TIGR02781 24 SSYDSRIRTVVYNPDD-VVRVVTSYGYSTTIEFADDETIKTVAVGDSKAWEVTPN---GNKLFIKPTEK 88 (243)
T ss_pred CCCCCceEEEEcCCCC-EEEEEEECCEEEEEEeCCCCEEEEecccCCcceEEEcC---CCEEEEEECCC
Confidence 3458888888776555 44566677889999999988776666666 7986643 47799998755
No 313
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=91.74 E-value=4.2 Score=30.15 Aligned_cols=62 Identities=16% Similarity=0.264 Sum_probs=47.4
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCCCcc
Q 033677 20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSCTYQ 82 (114)
Q Consensus 20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d~~~ 82 (114)
.+++.. .++++++.-..|+|...|..+++.+.+++-....|++++|-- +=.+|.+.+.-..+
T Consensus 216 Gm~ID~-eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~aa~~~ 278 (310)
T KOG4499|consen 216 GMTIDT-EGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTTAAKFD 278 (310)
T ss_pred cceEcc-CCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEehhccc
Confidence 345566 778999998899999999999999999987788999999953 33456555444333
No 314
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=91.60 E-value=0.7 Score=34.93 Aligned_cols=62 Identities=10% Similarity=0.012 Sum_probs=42.0
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-----------------CCCeEEEEECCCCCEEEEEeC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-----------------SNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-----------------~~~v~~v~fspdg~~la~~s~ 78 (114)
..+....|+| +++.++-.. ++.|.+++..++...+...+- ...-.++-|||||++||....
T Consensus 43 ~~~~~~~~sP-~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 43 PKLQDAKWSP-DGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp TTBSEEEE-S-SSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceeec-CCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 4577899999 898877665 578999988776433222211 123367899999999998776
Q ss_pred C
Q 033677 79 C 79 (114)
Q Consensus 79 d 79 (114)
|
T Consensus 121 d 121 (353)
T PF00930_consen 121 D 121 (353)
T ss_dssp E
T ss_pred C
Confidence 6
No 315
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.14 E-value=1.2 Score=39.28 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=48.5
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCC---CEEEEEeC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGG---QLLAVASS 78 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg---~~la~~s~ 78 (114)
-+.|++++.+| -++.+++|...|.+.+||++=+..+..+. .+..+++.+..+|-. ...++++.
T Consensus 1195 hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~ 1261 (1431)
T KOG1240|consen 1195 HGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGS 1261 (1431)
T ss_pred ccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecc
Confidence 34599999999 88999999999999999999887777765 445778888777632 34444443
No 316
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=90.90 E-value=0.81 Score=34.58 Aligned_cols=41 Identities=12% Similarity=0.179 Sum_probs=30.0
Q ss_pred CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 37 EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 37 Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
.+.+.+||+.+++... +......+....|||+|+.+|....
T Consensus 22 ~~~y~i~d~~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~~ 62 (353)
T PF00930_consen 22 KGDYYIYDIETGEITP-LTPPPPKLQDAKWSPDGKYIAFVRD 62 (353)
T ss_dssp EEEEEEEETTTTEEEE-SS-EETTBSEEEE-SSSTEEEEEET
T ss_pred ceeEEEEecCCCceEE-CcCCccccccceeecCCCeeEEEec
Confidence 3678899999876433 3333567889999999999998764
No 317
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.52 E-value=1 Score=35.39 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=42.4
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee-EEecC--CCCCeEEEE------ECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL-FELPR--FSNSVASLS------YNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~-~~~~~--~~~~v~~v~------fspdg~~la~~s~d 79 (114)
.++++++|.-++.+.|+.|-..|.|.+||++..+.. ..+.+ ...||..++ ..+.|.+++.++.+
T Consensus 236 ~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~ 308 (463)
T KOG1645|consen 236 NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV 308 (463)
T ss_pred CCceeeeeccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh
Confidence 679999999834478899999999999999975432 22222 234444433 33456677666655
No 318
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=90.42 E-value=1 Score=33.65 Aligned_cols=40 Identities=15% Similarity=0.160 Sum_probs=33.5
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP 55 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~ 55 (114)
...|..++++| ++..|++...+|.|.+|++=+-.....+.
T Consensus 229 ~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 229 QDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 34588999999 99999999999999999997766555554
No 319
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=90.37 E-value=1.4 Score=33.01 Aligned_cols=62 Identities=10% Similarity=0.052 Sum_probs=45.5
Q ss_pred eCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC--CcccccccCCCCcEEEEEcCc
Q 033677 35 DNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVIEEPPQIFIIRIDD 100 (114)
Q Consensus 35 s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~~~~~~i~i~~~~~ 100 (114)
..|..|+........ +..+....+.++.|.|.++.++..++.+| .|+.... .+.|||++.+.
T Consensus 29 ~~D~RIr~v~Y~p~~-V~~V~~~~G~~T~I~f~~gE~I~~va~GDt~sW~v~~~---~N~lfIKP~~~ 92 (292)
T PRK13861 29 KLDPRMRYLAYNPDQ-VVRLSTAVGATLVVTFGANETVTAVAVSNSKDLAALPR---GNYLFFKASKV 92 (292)
T ss_pred CCCCceEEEEeCCCC-EEEEEEECCcEEEEEECCCCEEEEeccccccceEEecC---CcEEEEEECCC
Confidence 358888887776555 45566777889999999998877666666 7876432 45689998754
No 320
>PRK13885 conjugal transfer protein TrbG; Provisional
Probab=90.17 E-value=1.5 Score=32.97 Aligned_cols=66 Identities=12% Similarity=0.120 Sum_probs=45.7
Q ss_pred EEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC--Cccccccc-----CCCCcEEEEEcCc
Q 033677 32 VTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVI-----EEPPQIFIIRIDD 100 (114)
Q Consensus 32 ~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~-----~~~~~i~i~~~~~ 100 (114)
..-+.||.|++- . +.....+......++.|.|.|+.++..++.+| .|...... ...+.|||++...
T Consensus 64 p~~g~DgrV~~~-Y--g~~~~~I~~apg~vt~I~L~pgE~I~~v~~GDt~~W~v~~~~sG~g~~~~~~i~IKP~~~ 136 (299)
T PRK13885 64 PVAGSDGSIKFV-Y--GAQQPSIVCAVLQVCDIALQPGEQVNSINLGDTARWTVEPAITGSGANEVQHLIIKPMDV 136 (299)
T ss_pred ceECCCCcEEEE-C--CCCeEEEEEeCCcEEEEEECCCCEEeeeccCCCcceEEeccccCCCCCceeEEEEEecCC
Confidence 345678888765 4 44455566667889999999988776556666 79866432 2234899999765
No 321
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=90.14 E-value=1.2 Score=35.95 Aligned_cols=59 Identities=19% Similarity=0.340 Sum_probs=38.3
Q ss_pred ecCeEEEEECCCCCCEEEE--EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 15 LVPVNDVVFSPLSRGAFVT--GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t--~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
-.||.+.+|.| .++.|++ |..+..+.++|++.. ....++ ...=+.+-|||.++++.++.
T Consensus 274 ~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~P--e~~rNT~~fsp~~r~il~ag 334 (561)
T COG5354 274 KDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFYFP--EQKRNTIFFSPHERYILFAG 334 (561)
T ss_pred cccceeeeecc-cCCceeEEecccccceeecccccc-eEEecC--CcccccccccCcccEEEEec
Confidence 56899999999 7766654 457889999999865 233222 22234566666666655543
No 322
>PRK13616 lipoprotein LpqB; Provisional
Probab=89.74 E-value=1.2 Score=36.57 Aligned_cols=56 Identities=14% Similarity=0.102 Sum_probs=34.3
Q ss_pred eEEEEECCCCCCEEEEEeCC------------CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 18 VNDVVFSPLSRGAFVTGDNE------------GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~D------------g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
...-.|+| ++..|++.... +.+.+.+++.+.... .....|..+.|||||..+|.-.
T Consensus 399 ~t~PsWsp-DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~ 466 (591)
T PRK13616 399 LTRPSWSL-DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII 466 (591)
T ss_pred CCCceECC-CCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE
Confidence 44567899 87766665432 233333443332211 2356799999999999888655
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=89.69 E-value=1.6 Score=32.60 Aligned_cols=46 Identities=22% Similarity=0.481 Sum_probs=33.3
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC-------CCCCeEEEEEC
Q 033677 20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR-------FSNSVASLSYN 67 (114)
Q Consensus 20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~-------~~~~v~~v~fs 67 (114)
-++|+| |+.+|+.+...|+|+++|+... .+..+.. ....|..+.|-
T Consensus 48 kl~WSp-D~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl 100 (282)
T PF15492_consen 48 KLAWSP-DCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFL 100 (282)
T ss_pred EEEECC-CCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEee
Confidence 689999 9999999999999999999753 3444432 12445555553
No 324
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.47 E-value=2.7 Score=30.25 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=33.1
Q ss_pred CEEEEEeCCCcEEEEeCCC--CeeeEEecCCCCCeEEEEECCCCCEEEE
Q 033677 29 GAFVTGDNEGYVAAWDAQS--RRRLFELPRFSNSVASLSYNHGGQLLAV 75 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~--~~~~~~~~~~~~~v~~v~fspdg~~la~ 75 (114)
..|+.+.....|.+||+.+ .+.+..|... +.|..+.++..|+++++
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvT 76 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVT 76 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEE
Confidence 3443435567899999983 3444555444 78999999999999987
No 325
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.44 E-value=2.1 Score=32.15 Aligned_cols=53 Identities=17% Similarity=0.179 Sum_probs=37.7
Q ss_pred EECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEE
Q 033677 22 VFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAV 75 (114)
Q Consensus 22 ~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~ 75 (114)
...+ ++.++..|+.|+..+..|.++..++.+.+-......+=+..| ++.++|+
T Consensus 100 ~~d~-~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a 153 (354)
T KOG4649|consen 100 QCDF-DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAA 153 (354)
T ss_pred EEcC-CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEE
Confidence 3466 789999999999999999999999988764333333334445 4554443
No 326
>PRK10115 protease 2; Provisional
Probab=89.23 E-value=6.7 Score=32.70 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=39.8
Q ss_pred cCeEEEEECCCCCCEEEEEeC-CC----cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDN-EG----YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~-Dg----~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+.+..+.++| ++++|+-+-+ +| .|++-|+.++..+.... ...-..++|.+|++.|+....+
T Consensus 127 ~~l~~~~~Sp-dg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~ 192 (686)
T PRK10115 127 YTLGGMAITP-DNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKH 192 (686)
T ss_pred EEEeEEEECC-CCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEec
Confidence 5577889999 8887665433 33 67788888775332211 1111469999999877776654
No 327
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=89.20 E-value=1.5 Score=21.10 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=20.7
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEE
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRRLFE 53 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~~~~ 53 (114)
.+++.++.+|.+..+|.++++.+.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEEEE
Confidence 4678888999999999999886654
No 328
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=88.95 E-value=4.3 Score=30.59 Aligned_cols=61 Identities=20% Similarity=0.323 Sum_probs=36.4
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeC-CCCeeeEE--ec--CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDA-QSRRRLFE--LP--RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~-~~~~~~~~--~~--~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|..+.|.| ++.+++.+ ..|.|++=+. .+...... .+ .....+..++|.++++++|+|...
T Consensus 188 riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 188 RIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp -EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred eehhceecC-CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 489999999 88776655 7888888772 22222111 11 123357899999999999887763
No 329
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=88.88 E-value=2.2 Score=32.18 Aligned_cols=63 Identities=21% Similarity=0.154 Sum_probs=41.5
Q ss_pred ecCeEEEEECCCCCCEEEEEeC-----------CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDN-----------EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~-----------Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
....|++...| ++.+.++-.. -|.++.+|. .+...+.+..+-...+.|+|||||+.|..+-+.
T Consensus 110 ~~r~ND~~v~p-dG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 110 LNRPNDGVVDP-DGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCceeEcC-CCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 45678889999 8877665443 133444443 455555555545556799999999888777664
No 330
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.53 E-value=1.7 Score=36.68 Aligned_cols=60 Identities=20% Similarity=0.375 Sum_probs=42.8
Q ss_pred cCeEEEEECCCC-----CCEEEEEeCCCcEEEEeCCC--CeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLS-----RGAFVTGDNEGYVAAWDAQS--RRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~-----~~~~~t~s~Dg~I~iwD~~~--~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-|+.+|+++| + ..+|++||..| +.++.-+= .+....+..-.++|.+++|. |.++|-++.+
T Consensus 113 rpiksial~P-d~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~ 179 (846)
T KOG2066|consen 113 RPIKSIALHP-DFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDD 179 (846)
T ss_pred CcceeEEecc-chhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCC
Confidence 4788999999 6 36899999999 66654321 11111344567899999997 7799887765
No 331
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=88.29 E-value=2 Score=36.44 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=49.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---------------eEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---------------LFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---------------~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
......+++|+. .+.+|++||.||.+++..+.+... -.++.+|..+|.-+.|+.+.+.|-++..
T Consensus 13 nnvkL~c~~WNk-e~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNK-ESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCceEEEEEEcc-cCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 344578999999 889999999999999987665211 1234578899999999988777766555
Q ss_pred C
Q 033677 79 C 79 (114)
Q Consensus 79 d 79 (114)
+
T Consensus 92 ~ 92 (1189)
T KOG2041|consen 92 S 92 (1189)
T ss_pred C
Confidence 4
No 332
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=88.28 E-value=1.3 Score=34.34 Aligned_cols=68 Identities=12% Similarity=0.293 Sum_probs=47.3
Q ss_pred CCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE---EecCC-----CCCeEEEEECCC-CCEEEEEeCC
Q 033677 10 DGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF---ELPRF-----SNSVASLSYNHG-GQLLAVASSC 79 (114)
Q Consensus 10 ~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~---~~~~~-----~~~v~~v~fspd-g~~la~~s~d 79 (114)
-.-.|.+-||+|+++. +++.|+++ +|=.|.+|.++--..-. -++.+ ..-|++..|+|. ..+|+.+++-
T Consensus 159 ~aNaHtyhiNSIS~Ns-D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSK 235 (433)
T KOG1354|consen 159 YANAHTYHINSISVNS-DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSK 235 (433)
T ss_pred ccccceeEeeeeeecC-ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCC
Confidence 3446789999999999 98888877 57789999987432222 22222 356889999995 4567666553
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=88.26 E-value=2.9 Score=34.65 Aligned_cols=42 Identities=10% Similarity=0.109 Sum_probs=30.9
Q ss_pred CCcEEEEeCCC----CeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 37 EGYVAAWDAQS----RRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 37 Dg~I~iwD~~~----~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
++.|.+.|.++ +..+..+...+.....+.+||||+++.++..
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank 340 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK 340 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC
Confidence 46788999887 3233333356777889999999999887665
No 334
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=88.24 E-value=1.1 Score=41.27 Aligned_cols=64 Identities=17% Similarity=0.297 Sum_probs=51.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+..|..+.=|| .....+||+.||.+++|--..+..+..+. .....|+.+.|+-.|..++++..|
T Consensus 2208 v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~d 2272 (2439)
T KOG1064|consen 2208 VENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGD 2272 (2439)
T ss_pred cCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccC
Confidence 44455666788 67788999999999999887777777665 234789999999999999998887
No 335
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.96 E-value=1.5 Score=37.47 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=42.1
Q ss_pred CceeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC
Q 033677 1 MFRCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG 70 (114)
Q Consensus 1 ~~~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg 70 (114)
||+|-|-..++- -+++|.-+| .++.|+.+..||.|++|+...++..+.. ....|--.+.|...|
T Consensus 4 t~~~s~~~k~~e----~~~aiqshp-~~~s~v~~~~d~si~lfn~~~r~qski~-~~~~p~~nlv~tnhg 67 (1636)
T KOG3616|consen 4 TFDCSRDPKEDE----FTTAIQSHP-GGQSFVLAHQDGSIILFNFIPRRQSKIC-EEAKPKENLVFTNHG 67 (1636)
T ss_pred cccccCCccccc----eeeeeeecC-CCceEEEEecCCcEEEEeecccchhhhh-hhcCCccceeeeccc
Confidence 578877544433 367889999 8899999999999999988765532211 222333345555444
No 336
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=87.86 E-value=1.9 Score=21.90 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=22.4
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEecC
Q 033677 30 AFVTGDNEGYVAAWDAQSRRRLFELPR 56 (114)
Q Consensus 30 ~~~t~s~Dg~I~iwD~~~~~~~~~~~~ 56 (114)
.++.+..||.|...|.++++.+..++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 456668999999999999998877763
No 337
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=87.60 E-value=0.72 Score=37.06 Aligned_cols=60 Identities=22% Similarity=0.270 Sum_probs=45.1
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
-..|+..++++| .+..|++.-.. -|.+|+-.....+..+. ...|..+.|||.++||.+=+
T Consensus 31 ~~~p~~~~~~SP-~G~~l~~~~~~-~V~~~~g~~~~~l~~~~--~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 31 ENWPVAYVSESP-LGTYLFSEHAA-GVECWGGPSKAKLVRFR--HPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred cCcchhheeecC-cchheehhhcc-ceEEccccchhheeeee--cCCceecccCcccceeeeec
Confidence 367899999999 88877776554 47899987766444443 34588999999999997643
No 338
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=86.92 E-value=4.1 Score=33.65 Aligned_cols=64 Identities=16% Similarity=0.188 Sum_probs=41.4
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC-----Ccccc
Q 033677 20 DVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC-----TYQEA 84 (114)
Q Consensus 20 ~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d-----~~~~~ 84 (114)
++.||| ....|+.-.....-.+++++.. ..++.-....+-|.+.+|.+||..|+++-+. .|+..
T Consensus 117 GCVWHP-k~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 117 GCVWHP-KKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred cccccC-CCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence 688999 7666655544444345666533 2233223556789999999999877665543 68755
No 339
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.91 E-value=2.7 Score=21.15 Aligned_cols=39 Identities=13% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCC-EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEE
Q 033677 27 SRG-AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSY 66 (114)
Q Consensus 27 ~~~-~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~f 66 (114)
+++ ++++...++.|.++|..+++.+..+.. ......++|
T Consensus 2 d~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 2 DGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 454 455555688999999988887776654 333345554
No 340
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=86.85 E-value=2.3 Score=36.67 Aligned_cols=55 Identities=22% Similarity=0.344 Sum_probs=44.3
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
|.-+..+ +..+.+|...|+|.+-|.++.+.++++..|.+.|..+... |.+|++++
T Consensus 180 v~imR~N---nr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfDv~--GNlLitCG 234 (1118)
T KOG1275|consen 180 VTIMRYN---NRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFDVQ--GNLLITCG 234 (1118)
T ss_pred eEEEEec---CcEEEeecccceEEeecCCcCceeeeeeccccceeeeecc--CCeEEEee
Confidence 4444444 3788999999999999999999999999999999877764 77776654
No 341
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=86.49 E-value=6.6 Score=28.72 Aligned_cols=58 Identities=14% Similarity=0.304 Sum_probs=37.7
Q ss_pred CeEEEEECCCCC-CEEEEEeCCCcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCCCEEEEEe
Q 033677 17 PVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 17 ~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg~~la~~s 77 (114)
.+.+|+|+| +. .+|++....+.|..++.+ ++.+..++-. ..-.-.|++-.++.+ +...
T Consensus 23 e~SGLTy~p-d~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~-vl~~ 82 (248)
T PF06977_consen 23 ELSGLTYNP-DTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRY-VLSE 82 (248)
T ss_dssp -EEEEEEET-TTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEE-EEEE
T ss_pred CccccEEcC-CCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEE-EEEE
Confidence 488999999 65 567777778888888875 6777776532 345678888776644 4444
No 342
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=86.31 E-value=5.7 Score=31.04 Aligned_cols=31 Identities=26% Similarity=0.588 Sum_probs=19.0
Q ss_pred EEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcCc
Q 033677 62 ASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDD 100 (114)
Q Consensus 62 ~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~~ 100 (114)
....|+|||+++...|.. .++.+||+-.+-+
T Consensus 354 Php~FSPDgk~VlF~Sd~--------~G~~~vY~v~i~~ 384 (386)
T PF14583_consen 354 PHPSFSPDGKWVLFRSDM--------EGPPAVYLVEIPD 384 (386)
T ss_dssp ---EE-TTSSEEEEEE-T--------TSS-EEEEEE--C
T ss_pred CCCccCCCCCEEEEECCC--------CCCccEEEEeCcc
Confidence 368999999999888744 6678899887643
No 343
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=86.27 E-value=2.7 Score=33.60 Aligned_cols=66 Identities=20% Similarity=0.422 Sum_probs=50.8
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCC------Cee---------eEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQS------RRR---------LFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~------~~~---------~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
.|..||..+.++| .+..+++....|.|.-|.... .+. +..+.......+++.|+|+|..+++-.
T Consensus 142 lH~sPV~~i~y~q-a~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~ 220 (558)
T KOG0882|consen 142 LHFSPVKKIRYNQ-AGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLN 220 (558)
T ss_pred cccCceEEEEeec-cccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccC
Confidence 5688999999999 999999998899999998873 111 111223345678999999999998877
Q ss_pred CC
Q 033677 78 SC 79 (114)
Q Consensus 78 ~d 79 (114)
.|
T Consensus 221 ~D 222 (558)
T KOG0882|consen 221 PD 222 (558)
T ss_pred cc
Confidence 66
No 344
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.12 E-value=2.3 Score=33.96 Aligned_cols=27 Identities=11% Similarity=0.206 Sum_probs=23.6
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEe
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRRRLFEL 54 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~ 54 (114)
..++++.+.|+.+++||+.++.++...
T Consensus 230 ~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 230 DTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp TTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 468899999999999999999986654
No 345
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=85.69 E-value=8.6 Score=29.02 Aligned_cols=61 Identities=11% Similarity=-0.067 Sum_probs=47.0
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe--eeE-EecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR--RLF-ELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~--~~~-~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
++.++++| ++.++++.+....|-+|.+.... .+. ......+.=-+.+||.....+|+++.|
T Consensus 161 ~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 161 QNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQD 224 (344)
T ss_pred eeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecC
Confidence 78899999 99999999999999999887532 222 122334445688999999999999988
No 346
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=85.45 E-value=5.8 Score=31.26 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=39.0
Q ss_pred cCeEEEEECCCCCCEEEE--EeCC--CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVT--GDNE--GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t--~s~D--g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..+..-.|.| ++..++- -... ..+.++|+.+++...... ....-..-+|||||+.||.....
T Consensus 193 ~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~r 258 (425)
T COG0823 193 SLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSR 258 (425)
T ss_pred cceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECC
Confidence 3455667888 7654322 2222 358889999876544333 23334467999999998877654
No 347
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=85.27 E-value=10 Score=28.57 Aligned_cols=60 Identities=17% Similarity=0.276 Sum_probs=31.3
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~ 76 (114)
..++++...+ ++.++++++.-..+.-||--...=...-......|.+|.|+|++.+..++
T Consensus 145 gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~ 204 (302)
T PF14870_consen 145 GSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA 204 (302)
T ss_dssp --EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE
T ss_pred ceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe
Confidence 4578888888 88877666544444568754321111112346789999999999876544
No 348
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=84.51 E-value=2.4 Score=37.45 Aligned_cols=56 Identities=14% Similarity=0.171 Sum_probs=38.8
Q ss_pred EEEEECCCCCCEEEE-----EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677 19 NDVVFSPLSRGAFVT-----GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t-----~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~ 76 (114)
+.|+|-. ++++|++ ......|++||.+ +..-..-......=.+++|-|.|.++|+-
T Consensus 199 ~~IsWRg-Dg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~i 259 (1265)
T KOG1920|consen 199 TSISWRG-DGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAI 259 (1265)
T ss_pred ceEEEcc-CCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeee
Confidence 3689998 9999888 3223799999987 43222222333444689999999999873
No 349
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=84.36 E-value=11 Score=29.41 Aligned_cols=54 Identities=11% Similarity=0.146 Sum_probs=39.2
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGG 70 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg 70 (114)
.++..++++| +++.++.-..+|.+.+...+-.+.+..+... ..+...+.|.-+.
T Consensus 217 ~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 217 GPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred CCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence 4799999999 9999999989999988876555555555422 3455677776544
No 350
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.34 E-value=3.2 Score=34.62 Aligned_cols=81 Identities=11% Similarity=0.077 Sum_probs=55.7
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--CCCCCeEEEEECCCCCEEEEEeCC---CcccccccCCCCc
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--RFSNSVASLSYNHGGQLLAVASSC---TYQEATVIEEPPQ 92 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~~~~~v~~v~fspdg~~la~~s~d---~~~~~~~~~~~~~ 92 (114)
|.--++.- ....++.|+.-|.+++|....+.. ...+ +-...+..++.|++.+++|+|+.. .|.--++.+.+..
T Consensus 36 v~lTc~ds-t~~~l~~GsS~G~lyl~~R~~~~~-~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDA-TEEYLAMGSSAGSVYLYNRHTGEM-RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeec-CCceEEEecccceEEEEecCchhh-hcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 33344555 568899999999999998776553 3333 244567788899999888888765 3433344577777
Q ss_pred EEEEEcCc
Q 033677 93 IFIIRIDD 100 (114)
Q Consensus 93 i~i~~~~~ 100 (114)
+|+.+...
T Consensus 114 ~~~t~~d~ 121 (726)
T KOG3621|consen 114 DYVTPCDK 121 (726)
T ss_pred eeeccccc
Confidence 88877654
No 351
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=84.09 E-value=3.4 Score=31.15 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=32.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeE-EEEECCCCCEEEEEeCC
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVA-SLSYNHGGQLLAVASSC 79 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~-~v~fspdg~~la~~s~d 79 (114)
++.+++++.+|.|.++|.++++.+.+++.....+. +-.+. +++ |.+++.|
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~~~-l~v~~~d 370 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-GDG-LLVQTRD 370 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-CCE-EEEEeCC
Confidence 35788888999999999999988877765443332 22222 333 4455555
No 352
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=83.89 E-value=6.3 Score=34.04 Aligned_cols=58 Identities=12% Similarity=0.115 Sum_probs=40.2
Q ss_pred CCcEEEEeCCCCeeeEEe-cCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcCc
Q 033677 37 EGYVAAWDAQSRRRLFEL-PRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDD 100 (114)
Q Consensus 37 Dg~I~iwD~~~~~~~~~~-~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~~ 100 (114)
.+.|.+=|........ + .....+|-+=+|||||+.||.+.+.. ...++..||++++..
T Consensus 328 ~~~L~~~D~dG~n~~~-ve~~~~~~i~sP~~SPDG~~vAY~ts~e-----~~~g~s~vYv~~L~t 386 (912)
T TIGR02171 328 TGNLAYIDYTKGASRA-VEIEDTISVYHPDISPDGKKVAFCTGIE-----GLPGKSSVYVRNLNA 386 (912)
T ss_pred CCeEEEEecCCCCceE-EEecCCCceecCcCCCCCCEEEEEEeec-----CCCCCceEEEEehhc
Confidence 3577777777654332 3 34567888889999999999866541 123567799999865
No 353
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=83.75 E-value=8 Score=23.85 Aligned_cols=42 Identities=12% Similarity=0.180 Sum_probs=27.3
Q ss_pred eCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 35 DNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 35 s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
..+|.+..||..+++......+. .-.+.|+++||++.+.++=
T Consensus 34 ~~~GRll~ydp~t~~~~vl~~~L-~fpNGVals~d~~~vlv~E 75 (89)
T PF03088_consen 34 RPTGRLLRYDPSTKETTVLLDGL-YFPNGVALSPDESFVLVAE 75 (89)
T ss_dssp ---EEEEEEETTTTEEEEEEEEE-SSEEEEEE-TTSSEEEEEE
T ss_pred CCCcCEEEEECCCCeEEEehhCC-CccCeEEEcCCCCEEEEEe
Confidence 34578888999988754444332 3468999999999776653
No 354
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.35 E-value=0.86 Score=40.00 Aligned_cols=63 Identities=11% Similarity=0.025 Sum_probs=45.4
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-..++.|+|.....++....|+.|.+..+........-.......++++|+|-|+.+++|-..
T Consensus 157 f~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nn 219 (1405)
T KOG3630|consen 157 FQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNN 219 (1405)
T ss_pred ccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCC
Confidence 355788999445677888889999987765433222222456678999999999999998654
No 355
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=83.04 E-value=19 Score=27.65 Aligned_cols=58 Identities=12% Similarity=0.177 Sum_probs=42.7
Q ss_pred eEEEEECCCCCCEEEEEeC---CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 18 VNDVVFSPLSRGAFVTGDN---EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~---Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
...+++.| ++..+..+.. ++.+.+.|..+.+.......-..+ ..++++|+|..+....
T Consensus 118 P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~ 178 (381)
T COG3391 118 PVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN 178 (381)
T ss_pred CceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe
Confidence 45789999 7765555444 689999999988877775433334 8999999999666555
No 356
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.93 E-value=3 Score=34.16 Aligned_cols=51 Identities=14% Similarity=0.345 Sum_probs=39.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeC
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~ 78 (114)
+..++.+|..|.|++||.-.-+....+++....|.-|..+.+|+++.+.+.
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk 623 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK 623 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec
Confidence 468999999999999996544433456777888999999999987665543
No 357
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=82.34 E-value=2 Score=33.24 Aligned_cols=44 Identities=16% Similarity=0.391 Sum_probs=32.4
Q ss_pred ECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC----CCCeEEEEEC
Q 033677 23 FSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF----SNSVASLSYN 67 (114)
Q Consensus 23 f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~----~~~v~~v~fs 67 (114)
.+| ....++++|+|-..++|.++.+..+.+++.. ...+.+++|.
T Consensus 354 v~~-eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 354 VKE-EEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred ccc-ccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehh
Confidence 445 4567888999999999999999988877532 2245566664
No 358
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=82.25 E-value=3.5 Score=31.69 Aligned_cols=61 Identities=16% Similarity=0.311 Sum_probs=42.1
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC-eeeEEecCC------------CCCe---EEEEECCCCCEEEEEe
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR-RRLFELPRF------------SNSV---ASLSYNHGGQLLAVAS 77 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~-~~~~~~~~~------------~~~v---~~v~fspdg~~la~~s 77 (114)
+..|.++.|.| ++++|++-. =-++++||.+.. .++++++-| ...| ..+.||-|.+.+.+|+
T Consensus 280 vsSISD~kFs~-ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgs 356 (460)
T COG5170 280 VSSISDFKFSD-NGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGS 356 (460)
T ss_pred hhhhcceEEcC-CCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccc
Confidence 56788999999 888877654 358999999864 455665432 1222 3678887777776665
No 359
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.64 E-value=14 Score=31.84 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=45.4
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC---CC-eeeEEecCCCCCeEEEEECCCCCE--EEEEeC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ---SR-RRLFELPRFSNSVASLSYNHGGQL--LAVASS 78 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~---~~-~~~~~~~~~~~~v~~v~fspdg~~--la~~s~ 78 (114)
..+|+..|+.+. +-..+++|-.||.|..+.-+ ++ ....-......+||.++|..+++. ||+...
T Consensus 124 ~~~p~s~l~Vs~-~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~ 193 (933)
T KOG2114|consen 124 NPSPASSLAVSE-DLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTE 193 (933)
T ss_pred CCCcceEEEEEc-cccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecc
Confidence 367899999998 88899999999999988432 22 211112244689999999999876 444433
No 360
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=81.64 E-value=17 Score=26.25 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=38.3
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEe-CCCCee-eEEec--CCCCCeEEEEECCCCCEEEEEeC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWD-AQSRRR-LFELP--RFSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD-~~~~~~-~~~~~--~~~~~v~~v~fspdg~~la~~s~ 78 (114)
.+..-+|.+ ++.+++....+....++. ..++.. ..... .....|+++.+||||..+|.-..
T Consensus 67 ~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~ 131 (253)
T PF10647_consen 67 SLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVE 131 (253)
T ss_pred ccccccccC-CCCEEEEEcCCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEe
Confidence 455668888 777666666566666663 233321 11222 12228999999999998887663
No 361
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=81.29 E-value=9.7 Score=29.72 Aligned_cols=51 Identities=20% Similarity=0.248 Sum_probs=36.1
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec--C------CCCCeEEEEEC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP--R------FSNSVASLSYN 67 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~--~------~~~~v~~v~fs 67 (114)
..+|++++.+. - .+++.|+.+|.+.+.|+|....++.-. . ....|+++.|+
T Consensus 86 ~g~vtal~~S~-i-GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~ 144 (395)
T PF08596_consen 86 QGPVTALKNSD-I-GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFS 144 (395)
T ss_dssp S-SEEEEEE-B-T-SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEE
T ss_pred CCcEeEEecCC-C-cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEE
Confidence 46799999875 4 589999999999999999887776522 2 23467888886
No 362
>PRK13839 conjugal transfer protein TrbG; Provisional
Probab=81.14 E-value=13 Score=27.85 Aligned_cols=66 Identities=11% Similarity=0.128 Sum_probs=41.8
Q ss_pred EEEEeCCCcEEE-EeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC--Cccccccc-----CCCCcEEEEEcCc
Q 033677 31 FVTGDNEGYVAA-WDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVI-----EEPPQIFIIRIDD 100 (114)
Q Consensus 31 ~~t~s~Dg~I~i-wD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~-----~~~~~i~i~~~~~ 100 (114)
+...+.||.+.+ |.-.. . ++......++.|.|.|+..+...+.+| .|...... ...+.|||++.+.
T Consensus 52 ~~~~~~dg~v~f~yg~~~-p---~v~~apg~vt~I~L~pgE~I~~va~GDt~~W~v~p~~~G~~~~~~~~lfIKP~~~ 125 (277)
T PRK13839 52 LVTKGPDGKVIFLFGETQ-P---SVVCSPLQVCDIELQGGEVVRDVLVGDTVRWKVEPATSGAAGGQAIHLIVKPSEP 125 (277)
T ss_pred ceEEcCCCCEEEEcCCCC-c---EEEEeCCcEEEEEECCCCEEEeeccCCCcceEEecccCCCCccceeEEEEeCCCC
Confidence 346667776554 43222 1 333456779999999988766555556 79855332 2236799998765
No 363
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=81.14 E-value=7.7 Score=33.71 Aligned_cols=67 Identities=10% Similarity=0.138 Sum_probs=48.4
Q ss_pred EEEEECCCCCCEEEEEeCCCcEEEEe---CCCC-eeeEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccccc
Q 033677 19 NDVVFSPLSRGAFVTGDNEGYVAAWD---AQSR-RRLFELPRFSNSVASLSYNHGGQLLAVASSC----TYQEAT 85 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD---~~~~-~~~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~~~ 85 (114)
.-+.|+|.-...+++++..|.+.+-| +.+. .-++.+......+.++.+|++|..||.|-.+ .|..-+
T Consensus 269 ~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~ 343 (1118)
T KOG1275|consen 269 QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRP 343 (1118)
T ss_pred hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCC
Confidence 35678994457899999999999999 4333 2223334445569999999999999998776 576443
No 364
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=79.84 E-value=9.4 Score=29.08 Aligned_cols=60 Identities=10% Similarity=0.134 Sum_probs=37.9
Q ss_pred cCeEEEEECCCCCCEEEEEeCC-------------------CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNE-------------------GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~D-------------------g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~ 76 (114)
...+.++|.| ++.+.++-+.. |.|..+|...++. ..+..-......++|+|+|+++++-
T Consensus 124 ~~~~~l~~gp-DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~td 201 (367)
T TIGR02604 124 HSLNSLAWGP-DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCD 201 (367)
T ss_pred ccccCceECC-CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEc
Confidence 4477899999 88876665521 4455566655442 2222223345689999999988754
Q ss_pred e
Q 033677 77 S 77 (114)
Q Consensus 77 s 77 (114)
.
T Consensus 202 n 202 (367)
T TIGR02604 202 N 202 (367)
T ss_pred c
Confidence 3
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=79.49 E-value=9 Score=27.96 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=43.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCC-CCeEEEEECCCCCEEEEE--eCC----Ccccc
Q 033677 27 SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFS-NSVASLSYNHGGQLLAVA--SSC----TYQEA 84 (114)
Q Consensus 27 ~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~-~~v~~v~fspdg~~la~~--s~d----~~~~~ 84 (114)
++.+..+++.||.|+.|.+.-.+.+-..-.|. .++.....+..++.++++ |.| .|+..
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 44578899999999999998777665555555 567777777778888887 655 57754
No 366
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=78.72 E-value=18 Score=26.16 Aligned_cols=62 Identities=15% Similarity=0.171 Sum_probs=39.6
Q ss_pred CeEEEEECCCCCCEEEEEe---CCCcEEEEeCC---CC--e----eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGD---NEGYVAAWDAQ---SR--R----RLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s---~Dg~I~iwD~~---~~--~----~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.|..+.++| ++..++... .++.|.+=-+. .+ . ...........++.++|.+++.+++.+...
T Consensus 113 ~I~~l~vSp-DG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 113 RITALRVSP-DGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred ceEEEEECC-CCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCC
Confidence 799999999 997655544 35677665432 22 1 111112335688999999999877765543
No 367
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=78.58 E-value=26 Score=27.34 Aligned_cols=81 Identities=19% Similarity=0.232 Sum_probs=47.5
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeE-------------------------------------------E
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLF-------------------------------------------E 53 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~-------------------------------------------~ 53 (114)
.|+.++|.+ ....|++|...|.|.+|.....+... .
T Consensus 3 ~v~~vs~a~-~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAP-ETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEET-TTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecC-CCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 488999999 77889999999998887543221110 0
Q ss_pred ecCCCCCeEEEEECCCCCEEEEEeCCCcc-cccccCCCCcEEEEEcCc
Q 033677 54 LPRFSNSVASLSYNHGGQLLAVASSCTYQ-EATVIEEPPQIFIIRIDD 100 (114)
Q Consensus 54 ~~~~~~~v~~v~fspdg~~la~~s~d~~~-~~~~~~~~~~i~i~~~~~ 100 (114)
+....++|++++.|.-| .+|+|..+..- ..+. .+|.-||-.++.+
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~-RGPavI~~~~i~~ 127 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDL-RGPAVIYNENIRE 127 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEET-TTTEEEEEEEGGG
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEEC-CCCeEEeeccccc
Confidence 11124789999998766 78889877432 1122 4444455555544
No 368
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=78.30 E-value=14 Score=31.26 Aligned_cols=30 Identities=33% Similarity=0.679 Sum_probs=26.5
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDA 45 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~ 45 (114)
++.-+|+|+|-+...||.....|...+||+
T Consensus 146 ~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i 175 (765)
T PF10214_consen 146 FPHADVAFNPWDQRQFAIVDEKGNWSVWDI 175 (765)
T ss_pred CccceEEeccCccceEEEEeccCcEEEEEe
Confidence 456799999956689999999999999999
No 369
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=77.50 E-value=19 Score=26.71 Aligned_cols=61 Identities=13% Similarity=0.255 Sum_probs=40.8
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCC---eeeEEe-cCC--CCCeEEEEECC--CCCEEEEEeC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR---RRLFEL-PRF--SNSVASLSYNH--GGQLLAVASS 78 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~---~~~~~~-~~~--~~~v~~v~fsp--dg~~la~~s~ 78 (114)
...++++.+ ++.++++--..+.|..||.... +....+ +.. -.-+..+++.+ +|.+.+.+..
T Consensus 187 ~s~g~~~D~-~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 187 QSDGMAIDP-NGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp SECEEEEET-TTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred CCceEEECC-CCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEECc
Confidence 345788899 8999999999999999999861 112222 222 24568999999 8877665543
No 370
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.46 E-value=22 Score=27.01 Aligned_cols=58 Identities=12% Similarity=0.212 Sum_probs=37.9
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC-CCCeEEEEECCCCCEEEEEe
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF-SNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~-~~~v~~v~fspdg~~la~~s 77 (114)
|.+++|+| +.++|++......-.+|=..+|..+.+++.. ....-+|.|..+|. ++++.
T Consensus 88 vS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~-fvi~d 146 (316)
T COG3204 88 VSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQ-FVIVD 146 (316)
T ss_pred ccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCE-EEEEe
Confidence 78999999 7777766666666666655668888877632 22334667766554 44444
No 371
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.31 E-value=23 Score=30.61 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=42.8
Q ss_pred ecCeEEEEECCCCCCE-EEEEeCCCcEEEEeCCCCee-eEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGA-FVTGDNEGYVAAWDAQSRRR-LFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~-~~t~s~Dg~I~iwD~~~~~~-~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..||+++++.. ++.. +.++. -..|.+|.+..+.. ...+..++.++++.+|++....|.++.+.
T Consensus 171 ~~pITgL~~~~-d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e 235 (933)
T KOG2114|consen 171 KEPITGLALRS-DGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSE 235 (933)
T ss_pred CCCceeeEEec-CCceeEEEEe-cceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCc
Confidence 57899999988 7755 33332 35788998886552 33356778899999999865535444443
No 372
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.28 E-value=4.1 Score=35.77 Aligned_cols=55 Identities=24% Similarity=0.315 Sum_probs=40.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCee-eEEecCCCCCeEEEEECCCCCEEEEEeCC----Cccc
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRR-LFELPRFSNSVASLSYNHGGQLLAVASSC----TYQE 83 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~-~~~~~~~~~~v~~v~fspdg~~la~~s~d----~~~~ 83 (114)
..++.|++.|.+-..|...... +..-.....+|++++|+.||+.++.|-.+ .|+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~ 159 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDM 159 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEc
Confidence 4688888888888888775422 12222346899999999999999998887 5763
No 373
>TIGR02775 TrbG_Ti P-type conjugative transfer protein TrbG. The TrbG protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbG is a homolog of the F-type TraK protein (which is believed to be an outer membrane pore-forming secretin, TIGR02756) as well as the vir system VirB9 protein .
Probab=76.69 E-value=15 Score=25.95 Aligned_cols=51 Identities=12% Similarity=0.153 Sum_probs=35.6
Q ss_pred eeEEecCCCCCeEEEEECCCCCEEEEEeCC--Cccccccc-----CCCCcEEEEEcCc
Q 033677 50 RLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVI-----EEPPQIFIIRIDD 100 (114)
Q Consensus 50 ~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~-----~~~~~i~i~~~~~ 100 (114)
.+..+......++.|.|.|+.++...+.+| .|...... ...+.|||++...
T Consensus 10 ~~~~v~~~~g~~T~I~l~~gE~i~~v~~GD~~~W~v~~~~~g~~~~~~~~i~IKP~~~ 67 (206)
T TIGR02775 10 ALPSIVCAPLQVCDIALQPGEQLNNILAGDTVRWKVEPTLSGSGDNARTHVIVKPSDV 67 (206)
T ss_pred cEEEEEEeCCcEEEEEeCCCCEEeeeccCCCCceEEeccccCCCCcceeEEEEEECCC
Confidence 445566667889999999988877666666 79865432 2234799998765
No 374
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=76.21 E-value=13 Score=29.71 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=33.0
Q ss_pred eEEEEECCCCCCE-EEEEeCCCcEEEEeCCCCeeeEEe---c----------------CCCCCeEEEEECCCCCEEEEEe
Q 033677 18 VNDVVFSPLSRGA-FVTGDNEGYVAAWDAQSRRRLFEL---P----------------RFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 18 V~~v~f~p~~~~~-~~t~s~Dg~I~iwD~~~~~~~~~~---~----------------~~~~~v~~v~fspdg~~la~~s 77 (114)
|++|.++. |.++ .+++-.+|.|+.||+.+....+.. . ...+...-|.+|.||+.|.+.+
T Consensus 314 itDI~iSl-DDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn 392 (461)
T PF05694_consen 314 ITDILISL-DDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN 392 (461)
T ss_dssp ---EEE-T-TS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred eEeEEEcc-CCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence 68899998 7665 466667999999999875333221 1 0112346788999998776554
Q ss_pred C-C-Ccc
Q 033677 78 S-C-TYQ 82 (114)
Q Consensus 78 ~-d-~~~ 82 (114)
+ + .|+
T Consensus 393 SLys~WD 399 (461)
T PF05694_consen 393 SLYSAWD 399 (461)
T ss_dssp ---HHHH
T ss_pred ecccccc
Confidence 4 3 566
No 375
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=76.07 E-value=15 Score=22.43 Aligned_cols=50 Identities=18% Similarity=0.168 Sum_probs=31.4
Q ss_pred CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcC
Q 033677 37 EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRID 99 (114)
Q Consensus 37 Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~ 99 (114)
-|.|..||..+-+ ....--...+.|.++|++++|.+++.-. ..|++....
T Consensus 35 ~~~Vvyyd~~~~~---~va~g~~~aNGI~~s~~~k~lyVa~~~~----------~~I~vy~~~ 84 (86)
T PF01731_consen 35 WGNVVYYDGKEVK---VVASGFSFANGIAISPDKKYLYVASSLA----------HSIHVYKRH 84 (86)
T ss_pred CceEEEEeCCEeE---EeeccCCCCceEEEcCCCCEEEEEeccC----------CeEEEEEec
Confidence 3567778764322 2222234567899999999988887542 556665543
No 376
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=75.59 E-value=5.7 Score=33.96 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=48.6
Q ss_pred eeeeecCCCCCeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC
Q 033677 3 RCHPKSKDGRHHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH 68 (114)
Q Consensus 3 ~ch~~~~~~~~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp 68 (114)
|--..+..|..+.+--+++.|+| . .+|+-|+ ...|.+-|.++-+.+..+..|...|+.+.|.|
T Consensus 3 ~~s~~tlpG~l~~sN~~A~Dw~~-~-GLiAygs-hslV~VVDs~s~q~iqsie~h~s~V~~VrWap 65 (1062)
T KOG1912|consen 3 KVSDHTLPGPLSRSNRNAADWSP-S-GLIAYGS-HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAP 65 (1062)
T ss_pred ccccccCCCCCCcccccccccCc-c-ceEEEec-CceEEEEehhhhhhhhccccCccceeEEEecc
Confidence 33344566666666678899999 4 4666665 45778889999998888989999999999987
No 377
>PRK13684 Ycf48-like protein; Provisional
Probab=75.12 E-value=28 Score=26.24 Aligned_cols=59 Identities=17% Similarity=0.257 Sum_probs=35.7
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEE-EeCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEe
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAA-WDAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~i-wD~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s 77 (114)
..++++.+.| ++..+ ..+..|.+.. +|- .++...... .....++++.+.|++++++++.
T Consensus 173 g~~~~i~~~~-~g~~v-~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 173 GVVRNLRRSP-DGKYV-AVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred ceEEEEEECC-CCeEE-EEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcCCCCEEEEec
Confidence 4578899999 76444 5555675553 222 222222222 3456788999999998776543
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=74.52 E-value=7.6 Score=30.61 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=33.5
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSN 59 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~ 59 (114)
+..|+.+| .+.+.++...=|.|.++|+.++..++.+++..+
T Consensus 310 ~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 310 GESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred EEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 67899999 877766665558999999999998888887644
No 379
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=74.52 E-value=13 Score=28.11 Aligned_cols=52 Identities=12% Similarity=0.103 Sum_probs=36.3
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+++++.|...|.+++.+++++.....+...+.--......+++.++..|+.|
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd 114 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHD 114 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCC
Confidence 4568888999999999999997776665332211123335678888888877
No 380
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=73.93 E-value=6.8 Score=34.03 Aligned_cols=58 Identities=16% Similarity=0.281 Sum_probs=41.0
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec----CCCCCeEEEEE--CCCCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP----RFSNSVASLSY--NHGGQ 71 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~----~~~~~v~~v~f--spdg~ 71 (114)
.|..+|..+.|+| +++.++|+..=|.+.+|...-...+.... .....++-++| +++++
T Consensus 99 th~a~i~~l~wS~-~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~E 162 (1416)
T KOG3617|consen 99 THPAPIQGLDWSH-DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDRE 162 (1416)
T ss_pred CCCCCceeEEecC-CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChH
Confidence 5688999999999 99999999999999999876332222221 22455665555 66654
No 381
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=73.73 E-value=11 Score=31.86 Aligned_cols=32 Identities=13% Similarity=0.266 Sum_probs=26.9
Q ss_pred cCeEEEEECCCC---CCEEEEEeCCCcEEEEeCCCC
Q 033677 16 VPVNDVVFSPLS---RGAFVTGDNEGYVAAWDAQSR 48 (114)
Q Consensus 16 ~~V~~v~f~p~~---~~~~~t~s~Dg~I~iwD~~~~ 48 (114)
..|..+.||| . +..|+.-..|+++++||+...
T Consensus 147 ~~i~qv~WhP-~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 147 LEIKQVRWHP-WSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred ceEEEEEEcC-CCCCCCeEEEEecCCEEEEEecCCC
Confidence 4588999999 5 368888889999999999764
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=73.12 E-value=24 Score=26.56 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=38.7
Q ss_pred EEEECCCCCCEEEEEeCCC-cEEEEeCCCCeeeEEecCCCCCeEEEEE-CCCCCEEEEEeC
Q 033677 20 DVVFSPLSRGAFVTGDNEG-YVAAWDAQSRRRLFELPRFSNSVASLSY-NHGGQLLAVASS 78 (114)
Q Consensus 20 ~v~f~p~~~~~~~t~s~Dg-~I~iwD~~~~~~~~~~~~~~~~v~~v~f-spdg~~la~~s~ 78 (114)
.++... ++++++++..+| .|.+|+.+ ++.+..+......+++++| .|+.+.|.+.+.
T Consensus 217 G~~vDa-dG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 217 GMAVDA-DGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ceEEeC-CCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 455566 677776555554 89999988 7777777655577888998 455565555443
No 383
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=71.41 E-value=14 Score=29.76 Aligned_cols=45 Identities=24% Similarity=0.431 Sum_probs=30.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEecCCCC-CeEEEEECCCCCEE
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRRLFELPRFSN-SVASLSYNHGGQLL 73 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~-~v~~v~fspdg~~l 73 (114)
.+++.+..||.++.+|.++++.+.+++.... .-.=+.|.-+|++.
T Consensus 473 ~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~~~~a~P~ty~~~G~qY 518 (527)
T TIGR03075 473 DLVFYGTLEGYFKAFDAKTGEELWKFKTGSGIVGPPVTYEQDGKQY 518 (527)
T ss_pred cEEEEECCCCeEEEEECCCCCEeEEEeCCCCceecCEEEEeCCEEE
Confidence 5777788899999999999999887753211 11123444567643
No 384
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=71.32 E-value=9.2 Score=19.28 Aligned_cols=19 Identities=32% Similarity=0.520 Sum_probs=14.7
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 033677 29 GAFVTGDNEGYVAAWDAQS 47 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~ 47 (114)
..++.++.||.++.+|.++
T Consensus 22 g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 22 GRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp SEEEEE-TTSEEEEEETT-
T ss_pred CEEEEEcCCCEEEEEeCCC
Confidence 5788888999999999764
No 385
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=70.85 E-value=32 Score=26.10 Aligned_cols=50 Identities=20% Similarity=0.342 Sum_probs=34.8
Q ss_pred eEEEEECCCCCCEEEE-EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCC
Q 033677 18 VNDVVFSPLSRGAFVT-GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGG 70 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t-~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg 70 (114)
|-+|++++ ++.++++ +-..|.+.+||..+++.+..... ..+-.++-.+++
T Consensus 219 ~gSIa~~~-~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~ 269 (305)
T PF07433_consen 219 IGSIAADR-DGRLIAVTSPRGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG 269 (305)
T ss_pred eEEEEEeC-CCCEEEEECCCCCEEEEEECCCCCEeecccc--CceeeeeecCCc
Confidence 67899999 8877644 54567999999999987655432 223455655566
No 386
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=70.69 E-value=36 Score=24.27 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=30.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEE
Q 033677 27 SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 27 ~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~ 76 (114)
.++.|+.|..+| +.+++........... ...+|..+..-|+-..|.+-
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~~~llvL 53 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPELNLLLVL 53 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEecccCEEEEE
Confidence 357888998888 8888884333222222 22348889888876555443
No 387
>PRK02888 nitrous-oxide reductase; Validated
Probab=70.67 E-value=35 Score=28.54 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=39.6
Q ss_pred EEEEECCCCCCEEEEEeCCCcEEEEeCCC----------CeeeEEecCCCCCeEEE-----EECCCCCEEEEEeC
Q 033677 19 NDVVFSPLSRGAFVTGDNEGYVAAWDAQS----------RRRLFELPRFSNSVASL-----SYNHGGQLLAVASS 78 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~----------~~~~~~~~~~~~~v~~v-----~fspdg~~la~~s~ 78 (114)
...+|.+ +++.+.|--.|..|..||+.. ...+.++.-|..+-... +-.|||++|++...
T Consensus 378 LHTaFDg-~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 378 LHTAFDG-RGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred ceEEECC-CCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEccc
Confidence 3568899 888888888999999999876 23334343333332222 23689999987654
No 388
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=70.66 E-value=2.6 Score=35.80 Aligned_cols=58 Identities=19% Similarity=0.262 Sum_probs=42.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee-eEEecCCCCCeEEEEECCCCC
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR-LFELPRFSNSVASLSYNHGGQ 71 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~-~~~~~~~~~~v~~v~fspdg~ 71 (114)
|+..|+.+.|+......+++++.||+|++||...... .........+|..-.|-|-|+
T Consensus 200 ~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 200 HVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGE 258 (1081)
T ss_pred cceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCc
Confidence 5777999999874457899999999999999875432 222334566777778878654
No 389
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=70.37 E-value=7.5 Score=31.20 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=31.1
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL 54 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~ 54 (114)
..++.|+| ++..|.+-+.|..|+++++++++.++.+
T Consensus 204 pts~Efsp-~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 204 PTSFEFSP-DGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred ccceEEcc-ccCcccccCcccEEEEEEeccchhhhhh
Confidence 46899999 9999999999999999999998765544
No 390
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=69.27 E-value=39 Score=25.36 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=17.8
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEe
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRRLFEL 54 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~ 54 (114)
..++.++.+|.+..+|.++++.+.+.
T Consensus 106 ~~v~v~~~~g~l~ald~~tG~~~W~~ 131 (377)
T TIGR03300 106 GLVFVGTEKGEVIALDAEDGKELWRA 131 (377)
T ss_pred CEEEEEcCCCEEEEEECCCCcEeeee
Confidence 45666777777777777777765544
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=69.25 E-value=35 Score=28.12 Aligned_cols=79 Identities=9% Similarity=-0.017 Sum_probs=43.4
Q ss_pred CeEEEEECCCCCCEEEEEe------CCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCCCcc-ccccc
Q 033677 17 PVNDVVFSPLSRGAFVTGD------NEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSCTYQ-EATVI 87 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s------~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d~~~-~~~~~ 87 (114)
.+...+++| +++.++..- .|+ .|.+++... .. ..+.. ....+.-+|+|||..|++.+..... +....
T Consensus 351 ~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~ 426 (591)
T PRK13616 351 NITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLGG-VA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNTVVRVIRD 426 (591)
T ss_pred CcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCCC-cc-eeeec-CCCCCCceECCCCCceEEEecCcceEEEecc
Confidence 466888999 887765544 244 444445422 22 22221 2247788999999888876532110 01111
Q ss_pred CCCCcEEEEEcC
Q 033677 88 EEPPQIFIIRID 99 (114)
Q Consensus 88 ~~~~~i~i~~~~ 99 (114)
.....+|+..+.
T Consensus 427 ~~~gql~~~~vd 438 (591)
T PRK13616 427 PATGQLARTPVD 438 (591)
T ss_pred CCCceEEEEecc
Confidence 234566666664
No 392
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=68.56 E-value=8.8 Score=32.91 Aligned_cols=50 Identities=18% Similarity=0.214 Sum_probs=41.8
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 30 AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 30 ~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+++.|...|+|.++|+.++.....+.-|...|.++.|--...++-.+.+.
T Consensus 439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSfsys~ 488 (1062)
T KOG1912|consen 439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSFSYSH 488 (1062)
T ss_pred eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEeeecc
Confidence 67889999999999999998888888899999999998766666555543
No 393
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=68.17 E-value=61 Score=25.97 Aligned_cols=70 Identities=10% Similarity=0.144 Sum_probs=42.5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCe--e---eEEecCCCCCeEEEEECCCC-CEEEEEeCCCcc------cccccCCCCcEEE
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRR--R---LFELPRFSNSVASLSYNHGG-QLLAVASSCTYQ------EATVIEEPPQIFI 95 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~--~---~~~~~~~~~~v~~v~fspdg-~~la~~s~d~~~------~~~~~~~~~~i~i 95 (114)
+++|+++-..+.|....++... . ...+......|..|..+||| .+.++.....-. -..+++.|.+|+.
T Consensus 369 g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~~~RiRdv~~~pDg~~iy~~td~~g~~~~~~~~~~~~~~~~~~~~~ 448 (454)
T TIGR03606 369 NSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKTNNRYRDVIASPDGNVLYVATDNFGNVQKDDGSVTNTLENPGSIIV 448 (454)
T ss_pred CCEEEEEcCCCeEEEEEecCCcceecceeEEeecCCCeeEEEEECCCCCEEEEEEcCCCccccCCCCceeEecCCCeEEE
Confidence 4677777777788877775441 1 12222225789999999998 444433322222 2245678888876
Q ss_pred EE
Q 033677 96 IR 97 (114)
Q Consensus 96 ~~ 97 (114)
..
T Consensus 449 ~~ 450 (454)
T TIGR03606 449 FT 450 (454)
T ss_pred EE
Confidence 54
No 394
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=67.99 E-value=30 Score=22.32 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=35.9
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC---CCC-EEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH---GGQ-LLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp---dg~-~la~~s~d 79 (114)
.|+.++-.. ...|+.+-.+|+|-+|+-.. .+...+ ....++++.+.. ||. .|.+|.++
T Consensus 44 ~v~~L~~~~--~~~F~Y~l~NGTVGvY~~~~--RlWRiK-SK~~~~~~~~~D~~gdG~~eLI~Gwsn 105 (111)
T PF14783_consen 44 KVTSLCSLG--GGRFAYALANGTVGVYDRSQ--RLWRIK-SKNQVTSMAFYDINGDGVPELIVGWSN 105 (111)
T ss_pred ceEEEEEcC--CCEEEEEecCCEEEEEeCcc--eeeeec-cCCCeEEEEEEcCCCCCceEEEEEecC
Confidence 467776665 36899999999999998643 333343 333455555433 332 56666554
No 395
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=66.69 E-value=23 Score=28.10 Aligned_cols=44 Identities=20% Similarity=0.538 Sum_probs=30.7
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeE--EEEECCCCCE
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVA--SLSYNHGGQL 72 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~--~v~fspdg~~ 72 (114)
+..++.++.||.|+.+|.++++.+.+++. ...+. =+.|..+|++
T Consensus 406 g~~v~~g~~dG~l~ald~~tG~~lW~~~~-~~~~~a~P~~~~~~g~~ 451 (488)
T cd00216 406 GNLVFAGAADGYFRAFDATTGKELWKFRT-PSGIQATPMTYEVNGKQ 451 (488)
T ss_pred CCeEEEECCCCeEEEEECCCCceeeEEEC-CCCceEcCEEEEeCCEE
Confidence 36788888999999999999998877653 23322 2334446653
No 396
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=66.56 E-value=24 Score=30.03 Aligned_cols=51 Identities=14% Similarity=0.393 Sum_probs=33.5
Q ss_pred CCEEEE-EeCCCcEEEEeCCCCeeeEEecCCC-CCeEEEEEC-CCCC-EEEEEeC
Q 033677 28 RGAFVT-GDNEGYVAAWDAQSRRRLFELPRFS-NSVASLSYN-HGGQ-LLAVASS 78 (114)
Q Consensus 28 ~~~~~t-~s~Dg~I~iwD~~~~~~~~~~~~~~-~~v~~v~fs-pdg~-~la~~s~ 78 (114)
+.+++. |..|+.++.+|.++++.+.+.+... ..-+=++|. -+|+ |+++.+.
T Consensus 691 gglvF~~gt~d~~l~A~D~~tGk~lW~~~l~~~~~a~P~tY~~~~GkQYVvi~aG 745 (764)
T TIGR03074 691 GGLVFIGATQDNYLRAYDLSTGKELWKARLPAGGQATPMTYMGKDGKQYVVIVAG 745 (764)
T ss_pred CCEEEEEeCCCCEEEEEECCCCceeeEeeCCCCcccCCEEEEecCCEEEEEEEeC
Confidence 355555 7789999999999999887775321 112234555 5775 6666554
No 397
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=66.42 E-value=21 Score=27.50 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=27.9
Q ss_pred cCeEEEEECCCCCC-EEEEE-eCCCcEEEEeCCCCeeeEEecCC
Q 033677 16 VPVNDVVFSPLSRG-AFVTG-DNEGYVAAWDAQSRRRLFELPRF 57 (114)
Q Consensus 16 ~~V~~v~f~p~~~~-~~~t~-s~Dg~I~iwD~~~~~~~~~~~~~ 57 (114)
.++.+|+.+. +.. +|++. ..++.+.+||..+++.+......
T Consensus 289 ~~~~Si~Vsq-d~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 289 HPIDSIAVSQ-DDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEESEEEEES-SSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CccceEEEcc-CCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 4577899988 553 55554 45899999999999988887644
No 398
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=65.65 E-value=52 Score=25.68 Aligned_cols=22 Identities=9% Similarity=0.359 Sum_probs=18.5
Q ss_pred CCCeEEEEECCCCCEEEEEeCC
Q 033677 58 SNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 58 ~~~v~~v~fspdg~~la~~s~d 79 (114)
.+++..|++||+|+.+|.-..+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~ 237 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDS 237 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECC
Confidence 4689999999999999876654
No 399
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=65.39 E-value=12 Score=32.15 Aligned_cols=61 Identities=26% Similarity=0.359 Sum_probs=45.4
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe---cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL---PRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~---~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
.-||..++|.. -++-++.+|.|.++...+....... +.+...|+.+.+..+|=++|.+++|
T Consensus 626 ~lPvrsla~~e----d~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwvafasG~ 689 (925)
T KOG3522|consen 626 SLPVRSLAFQE----DFVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVAFASGD 689 (925)
T ss_pred Cccccchhhhh----ceeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEEEcCCC
Confidence 45667666655 3567778999999998875544433 3456789999999999888888887
No 400
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=65.05 E-value=22 Score=27.63 Aligned_cols=66 Identities=9% Similarity=0.149 Sum_probs=53.3
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC----CCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ----SRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~----~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+...++.++++.+ ....|++|=..|.+.-+.+. ....++.+..|...+..+-|+-.-+++.+.+.|
T Consensus 66 ~mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~d 135 (404)
T KOG1409|consen 66 YMPSPCSAMEYVS-ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKD 135 (404)
T ss_pred hCCCCceEeeeec-cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccc
Confidence 3467889999999 88889999999999887543 345556666888999999999888888888877
No 401
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=65.00 E-value=13 Score=20.89 Aligned_cols=20 Identities=10% Similarity=0.180 Sum_probs=16.6
Q ss_pred CeEEEEECCCCCEEEEEeCC
Q 033677 60 SVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 60 ~v~~v~fspdg~~la~~s~d 79 (114)
.+.++++-|||++|++|...
T Consensus 2 ~~~~~~~q~DGkIlv~G~~~ 21 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYVD 21 (55)
T ss_pred ceEEEEECCCCcEEEEEEee
Confidence 35688999999999998764
No 402
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=64.93 E-value=21 Score=24.57 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeee
Q 033677 27 SRGAFVTGDNEGYVAAWDAQSRRRL 51 (114)
Q Consensus 27 ~~~~~~t~s~Dg~I~iwD~~~~~~~ 51 (114)
.+..++.++.++.|..||+++++.+
T Consensus 211 ~~~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 211 DGGTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp CCTEEEEEETTTEEEEEETTTTEEE
T ss_pred eCCEEEEEeCCCEEEEEECCCCCEE
Confidence 3455555556777777777777654
No 403
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=63.84 E-value=7.5 Score=32.52 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=39.8
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEe-CCCCe-eeEEec----CCCCCeEEEEECCCC-CEEEEEeCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWD-AQSRR-RLFELP----RFSNSVASLSYNHGG-QLLAVASSC 79 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD-~~~~~-~~~~~~----~~~~~v~~v~fspdg-~~la~~s~d 79 (114)
-+.++...|...++|++-. ||.|-+|| .++-+ .+..+. .-+..+..++|.|.. .++|+.+.|
T Consensus 197 ~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~Rd 265 (783)
T KOG1008|consen 197 YVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRD 265 (783)
T ss_pred hcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccC
Confidence 3567788885567776665 99999999 43322 222222 223458999999954 367766665
No 404
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=63.16 E-value=57 Score=24.80 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=37.5
Q ss_pred ecCeEEEEECCCCCCEEEEEe-----------CCC-cEEEEeCCC--Cee--eEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 15 LVPVNDVVFSPLSRGAFVTGD-----------NEG-YVAAWDAQS--RRR--LFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s-----------~Dg-~I~iwD~~~--~~~--~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
+.....|+|.+ +++++++-. ..+ .|.+++-.+ +.. ...+.......+.+++.++| ++++..
T Consensus 13 ~~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~~~ 89 (367)
T TIGR02604 13 LRNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVATP 89 (367)
T ss_pred cCCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEeCC
Confidence 44567899999 898887753 223 677775443 221 22333333456889999998 665533
No 405
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=61.97 E-value=15 Score=25.23 Aligned_cols=29 Identities=21% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEecC
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRRRLFELPR 56 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~ 56 (114)
+..+++++.++.|..||..+++.+..+..
T Consensus 36 ~~~v~~~~~~~~l~~~d~~tG~~~W~~~~ 64 (238)
T PF13360_consen 36 GGRVYVASGDGNLYALDAKTGKVLWRFDL 64 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSEEEEEEEC
T ss_pred CCEEEEEcCCCEEEEEECCCCCEEEEeec
Confidence 45777778999999999999998876653
No 406
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=61.84 E-value=69 Score=26.83 Aligned_cols=50 Identities=22% Similarity=0.353 Sum_probs=32.6
Q ss_pred EEEEEeCC-CcEEEEeCCCCeeeEEec-CCCCCeEEEEE--CCCCC-EEEEEeCC
Q 033677 30 AFVTGDNE-GYVAAWDAQSRRRLFELP-RFSNSVASLSY--NHGGQ-LLAVASSC 79 (114)
Q Consensus 30 ~~~t~s~D-g~I~iwD~~~~~~~~~~~-~~~~~v~~v~f--spdg~-~la~~s~d 79 (114)
.++....+ ..+.+||.+.+.....-. ...++|..+.| .|||+ +||+|-..
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 34444444 488999999876443322 45788999988 46775 66666654
No 407
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.77 E-value=3 Score=34.42 Aligned_cols=40 Identities=10% Similarity=0.167 Sum_probs=34.5
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF 57 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~ 57 (114)
-+.+++..| .++.++.+-.+|.|.+.|.++++.+..+..-
T Consensus 878 ~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 878 LTRAIAVAD-KGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred heeEEEecc-CcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 366889999 8999999999999999999999988766543
No 408
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=61.44 E-value=67 Score=24.14 Aligned_cols=58 Identities=16% Similarity=0.272 Sum_probs=36.5
Q ss_pred CeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee---eEEec----CCCCCeEEEEECCC----CCEEEEEe
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR---LFELP----RFSNSVASLSYNHG----GQLLAVAS 77 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~---~~~~~----~~~~~v~~v~fspd----g~~la~~s 77 (114)
...+|+|.| ++.+|++- ..|.|.+++ .++.. +.... .....+..++|.|+ +.+.++.+
T Consensus 3 ~P~~~a~~p-dG~l~v~e-~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t 71 (331)
T PF07995_consen 3 NPRSMAFLP-DGRLLVAE-RSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYT 71 (331)
T ss_dssp SEEEEEEET-TSCEEEEE-TTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEE
T ss_pred CceEEEEeC-CCcEEEEe-CCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEE
Confidence 357899999 88777664 499999999 44433 22221 23456789999994 55444444
No 409
>PRK13684 Ycf48-like protein; Provisional
Probab=61.33 E-value=55 Score=24.67 Aligned_cols=60 Identities=13% Similarity=0.159 Sum_probs=36.8
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC----CCCCeEEEEECCCCCEEEEEe
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR----FSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~----~~~~v~~v~fspdg~~la~~s 77 (114)
..++++.+.| ++..++.+ ..|.+.+=..+.+........ ....+.++.|.|++.+++++.
T Consensus 215 ~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~ 278 (334)
T PRK13684 215 RRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGG 278 (334)
T ss_pred ccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcC
Confidence 4578889998 77766554 567765323344443222221 123478899999888777654
No 410
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=61.26 E-value=13 Score=31.33 Aligned_cols=40 Identities=23% Similarity=0.356 Sum_probs=34.8
Q ss_pred EEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 40 VAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 40 I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+.+-|+.+...+..++.|..++..++|.+.|.++++++-.
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~ 336 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASIT 336 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeec
Confidence 5566888888888899999999999999999999998855
No 411
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.74 E-value=70 Score=26.19 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=35.0
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCC--eeeEEec-CCCCCeEEEEECCCCCEEEEEeCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSR--RRLFELP-RFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~--~~~~~~~-~~~~~v~~v~fspdg~~la~~s~d 79 (114)
-+++-|.. .+.++++.-. |.+.-|-.... ...-.+. ...++|.++.||+|.+.+|+--++
T Consensus 25 sngvFfDD-aNkqlfavrS-ggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~ 87 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLFAVRS-GGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTS 87 (657)
T ss_pred ccceeecc-CcceEEEEec-CCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecC
Confidence 45677765 4444433322 33334444321 1122232 345699999999999999997766
No 412
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.71 E-value=32 Score=28.03 Aligned_cols=59 Identities=8% Similarity=0.048 Sum_probs=41.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeee----EEecCCCCCeEEEEECCCCCEEEE
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRL----FELPRFSNSVASLSYNHGGQLLAV 75 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~----~~~~~~~~~v~~v~fspdg~~la~ 75 (114)
.++|.+|.|++ |++.++..-.|.+|.+.+....+.. .+.+.-...|....|+.+. -+|.
T Consensus 66 ~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s~-e~A~ 128 (657)
T KOG2377|consen 66 KGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSST-EIAF 128 (657)
T ss_pred CCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecCe-eEEE
Confidence 45899999999 9999999999999999988432211 1122234458888887663 4444
No 413
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=59.15 E-value=54 Score=27.80 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=42.4
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEe----cC-----------C----CCCeEEEEECCCCCEEEEE
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFEL----PR-----------F----SNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~----~~-----------~----~~~v~~v~fspdg~~la~~ 76 (114)
..|.+|.... -+..++..-.||+|.++|..+.+.+... .. . ..++.-++|||++-.++.-
T Consensus 260 ~~V~si~~~~-~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPE-LDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecc-cCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 4577888777 6678899999999999998876444333 10 0 1133457899988766655
Q ss_pred eCC
Q 033677 77 SSC 79 (114)
Q Consensus 77 s~d 79 (114)
..+
T Consensus 339 ~~~ 341 (753)
T PF11635_consen 339 DED 341 (753)
T ss_pred ecC
Confidence 444
No 414
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=58.65 E-value=21 Score=28.22 Aligned_cols=41 Identities=15% Similarity=0.230 Sum_probs=31.7
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC
Q 033677 27 SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH 68 (114)
Q Consensus 27 ~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp 68 (114)
+...++.|..+|.|++|.. ++..+..-.-|..+|..+....
T Consensus 78 dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 78 DWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred CcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 3467899999999999976 5655555556888999888854
No 415
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=58.36 E-value=2.2 Score=19.76 Aligned_cols=9 Identities=22% Similarity=0.763 Sum_probs=6.6
Q ss_pred EECCCCCEE
Q 033677 65 SYNHGGQLL 73 (114)
Q Consensus 65 ~fspdg~~l 73 (114)
.|||+|+++
T Consensus 7 ~FSp~Grl~ 15 (23)
T PF10584_consen 7 TFSPDGRLF 15 (23)
T ss_dssp SBBTTSSBH
T ss_pred eECCCCeEE
Confidence 488988764
No 416
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=57.29 E-value=41 Score=25.61 Aligned_cols=27 Identities=30% Similarity=0.481 Sum_probs=20.4
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEec
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRRLFELP 55 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~ 55 (114)
..|+.++.||.+.+.|..+++.+.+.+
T Consensus 336 g~l~v~~~~G~l~~ld~~tG~~~~~~~ 362 (394)
T PRK11138 336 GYLVVGDSEGYLHWINREDGRFVAQQK 362 (394)
T ss_pred CEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 567777888888888888887766554
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=56.26 E-value=1.1e+02 Score=25.61 Aligned_cols=62 Identities=10% Similarity=0.208 Sum_probs=40.7
Q ss_pred ecCeEEEEEC--CCCCCEEEEEeCCCcEEEEeC-----CCC----eeeEEe--cCC-CCCeEEEEECCCCCEEEEEe
Q 033677 15 LVPVNDVVFS--PLSRGAFVTGDNEGYVAAWDA-----QSR----RRLFEL--PRF-SNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 15 ~~~V~~v~f~--p~~~~~~~t~s~Dg~I~iwD~-----~~~----~~~~~~--~~~-~~~v~~v~fspdg~~la~~s 77 (114)
..+|.++.|. | +++.+++.|-...|.+|-- .+. ..++.+ ..+ +.+|.+..|-++|.+++.++
T Consensus 72 ~~~I~dLDWtst~-d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG 147 (631)
T PF12234_consen 72 DDPIRDLDWTSTP-DGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG 147 (631)
T ss_pred CCceeeceeeecC-CCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC
Confidence 3468888875 6 6678888888888888743 111 222322 223 46899999999997665444
No 418
>PF03524 CagX: Conjugal transfer protein; InterPro: IPR010258 Several bacterial pathogens utilise conjugation machines to export effector molecules during infection. Such systems are members of the type IV or 'adapted conjugation' secretion family. The prototypical type IV system is the Agrobacterium tumefaciens T-DNA transfer machine, which delivers oncogenic nucleoprotein particles to plant cells. Other pathogens, including Bordetella pertussis, Legionella pneumophila, Brucella spp. and Helicobacter pylori (Campylobacter pylori), use type IV machines to export effector proteins to the extracellular milieu or the mammalian cell cytosol. Conjugation machines of Gram-negative bacteria consist of two surface structures, the mating channel through which the DNA transfer intermediate and proteins are translocated and the conjugal pilus for contacting recipient cells. Various conjugative pili have been visualised, but to date there is no ultrastructural information about the mating channel. Recent work on the A. tumefaciens T-DNA transfer system has focused on identifying interactions among the VirB protein subunits and defining steps in the transporter assembly pathway. There are three functional groups of VirB proteins: proteins localised exocellularly forming the T-pilus or other adhesive structures; mating-channel components; and cytoplasmic membrane ATPases. Although all of these proteins probably assemble as a supramolecular complex, as yet there is no direct evidence for a physical association between the conjugative pilus and the mating channel. Several lines of evidence suggest that VirB6-VirB10 are probable channel subunits. VirB6, a highly hydrophobic protein, is thought to span the cytoplasmic membrane several times and presently is the best candidate for a channel-forming protein. VirB7, an outer membrane lipoprotein, interacts with itself and with VirB9 via disulphide bonds between unique reactive cysteines present in each protein. The VirB7-VirB9 heterodimer localises at the outer membrane and plays a critical role in stabilising other VirB proteins during assembly of the transfer machine. VirB9 is also required for formation of chemically crosslinked VirB10 oligomers probably corresponding to homotrimers [].; PDB: 3JQO_i 2OFQ_A.
Probab=56.13 E-value=3.7 Score=28.96 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=0.0
Q ss_pred EecCCCCCeEEEEECCCCCEEEE--EeCCCcccccccCCCCcEEEEEcCc
Q 033677 53 ELPRFSNSVASLSYNHGGQLLAV--ASSCTYQEATVIEEPPQIFIIRIDD 100 (114)
Q Consensus 53 ~~~~~~~~v~~v~fspdg~~la~--~s~d~~~~~~~~~~~~~i~i~~~~~ 100 (114)
.+......++.|.|.|+..+.-. |.+..|..... ..+.|||++...
T Consensus 16 ~I~t~~g~~T~I~l~~gE~i~~~~~Gd~~~W~v~~~--~~n~i~iKP~~~ 63 (214)
T PF03524_consen 16 RIYTRPGYVTDIELGPGEKIKSVAIGDSVRWQVEPA--RGNHIFIKPKEA 63 (214)
T ss_dssp --------------------------------------------------
T ss_pred EEEEEcCcEEEEEECCCCEEEEeeccCCCcEEEeec--CCCEEEEEECCC
Confidence 34455667888999887665434 44447886553 667888888754
No 419
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=54.90 E-value=24 Score=16.88 Aligned_cols=23 Identities=9% Similarity=0.307 Sum_probs=18.7
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEE
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAW 43 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iw 43 (114)
|.+|+..+ .+++.+...+.+++|
T Consensus 4 i~aia~g~---~~vavaTS~~~lRif 26 (27)
T PF12341_consen 4 IEAIAAGD---SWVAVATSAGYLRIF 26 (27)
T ss_pred EEEEEccC---CEEEEEeCCCeEEec
Confidence 77888877 588888888888887
No 420
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=54.68 E-value=96 Score=23.79 Aligned_cols=62 Identities=18% Similarity=0.231 Sum_probs=41.9
Q ss_pred EEEEECCCCCCEE-EEEeCCCcEEEEeCCCCeeeE-E---ecCCCCCeEEEEECCCCCEEEEEeCCCc
Q 033677 19 NDVVFSPLSRGAF-VTGDNEGYVAAWDAQSRRRLF-E---LPRFSNSVASLSYNHGGQLLAVASSCTY 81 (114)
Q Consensus 19 ~~v~f~p~~~~~~-~t~s~Dg~I~iwD~~~~~~~~-~---~~~~~~~v~~v~fspdg~~la~~s~d~~ 81 (114)
..+++.| +++.+ ++-..++.|.+.|........ . ..........+.++|+|..+.+.-...|
T Consensus 163 ~~~a~~p-~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~ 229 (381)
T COG3391 163 TGVAVDP-DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSG 229 (381)
T ss_pred ceEEECC-CCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCC
Confidence 7899999 88754 445578899999987665442 1 1122333457899999987666555544
No 421
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=53.86 E-value=24 Score=16.51 Aligned_cols=22 Identities=14% Similarity=0.243 Sum_probs=10.1
Q ss_pred EEEEECCCCCCEEEEEeCCCcEE
Q 033677 19 NDVVFSPLSRGAFVTGDNEGYVA 41 (114)
Q Consensus 19 ~~v~f~p~~~~~~~t~s~Dg~I~ 41 (114)
.+|++.+ +++++++=.....|.
T Consensus 5 ~gvav~~-~g~i~VaD~~n~rV~ 26 (28)
T PF01436_consen 5 HGVAVDS-DGNIYVADSGNHRVQ 26 (28)
T ss_dssp EEEEEET-TSEEEEEECCCTEEE
T ss_pred cEEEEeC-CCCEEEEECCCCEEE
Confidence 4555555 444444443344443
No 422
>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function.
Probab=53.64 E-value=74 Score=25.90 Aligned_cols=20 Identities=15% Similarity=0.263 Sum_probs=16.6
Q ss_pred CCCCeEEEEECCCCCEEEEE
Q 033677 57 FSNSVASLSYNHGGQLLAVA 76 (114)
Q Consensus 57 ~~~~v~~v~fspdg~~la~~ 76 (114)
....++.++|+||++.|.+.
T Consensus 500 ~gaE~tG~~fspDg~tlFvn 519 (524)
T PF05787_consen 500 NGAEITGPCFSPDGRTLFVN 519 (524)
T ss_pred CCcccccceECCCCCEEEEE
Confidence 46789999999999987664
No 423
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=53.13 E-value=83 Score=24.64 Aligned_cols=60 Identities=10% Similarity=0.096 Sum_probs=37.8
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-----eeEEecC--CCCCeEEEEECCCCCEEEEEeC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-----RLFELPR--FSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-----~~~~~~~--~~~~v~~v~fspdg~~la~~s~ 78 (114)
..++++.+.+ ++.+++++ .+|.+. |....++ .+..... ....+.++.|.++++.+++|-.
T Consensus 281 ~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~ 347 (398)
T PLN00033 281 RRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGS 347 (398)
T ss_pred cceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECC
Confidence 3477888988 77776655 556644 4444443 2222221 2235889999999998887764
No 424
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=51.45 E-value=79 Score=23.31 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=34.2
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCe-eeEEe-cCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRR-RLFEL-PRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~-~~~~~-~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..+|++|+--. ..|+.+. .+.|.+|++...+ ....- ......++++... +.++++|...
T Consensus 88 ~g~V~ai~~~~---~~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~ 148 (321)
T PF03178_consen 88 KGPVTAICSFN---GRLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAM 148 (321)
T ss_dssp SS-EEEEEEET---TEEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESS
T ss_pred cCcceEhhhhC---CEEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcc
Confidence 45588877554 2344433 4789999988776 33222 2233466666654 5588877654
No 425
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=50.91 E-value=33 Score=17.39 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=18.1
Q ss_pred CeEEEEECCCCCCEEEEEeCCC
Q 033677 17 PVNDVVFSPLSRGAFVTGDNEG 38 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~Dg 38 (114)
..++|++.+ +++.+++|..++
T Consensus 14 ~~~~IavD~-~GNiYv~G~T~~ 34 (38)
T PF06739_consen 14 YGNGIAVDS-NGNIYVTGYTNG 34 (38)
T ss_pred eEEEEEECC-CCCEEEEEeecC
Confidence 478999999 999999998776
No 426
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=50.59 E-value=34 Score=25.53 Aligned_cols=39 Identities=18% Similarity=0.202 Sum_probs=26.0
Q ss_pred cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 39 YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 39 ~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
.|.+||..+.+=..--....+.|+++.|..+.++++.|.
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ 55 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGN 55 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEe
Confidence 588899876542111124567899999986667777664
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.12 E-value=68 Score=28.99 Aligned_cols=59 Identities=20% Similarity=0.299 Sum_probs=41.8
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecC----CCCCeEEEEECCCCCEEEE
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPR----FSNSVASLSYNHGGQLLAV 75 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~----~~~~v~~v~fspdg~~la~ 75 (114)
...+++|+|+| .+..++.|-..|++..|-..- +....+.. ....|.+|+|-..-.++++
T Consensus 198 t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~l-eik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 198 TNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPSL-EIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred ccceeeEEecc-ccceeeEecCCCeEEEeeccc-ceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 34578999999 999999999999999986643 22222321 2467899999765555543
No 428
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=49.91 E-value=50 Score=19.10 Aligned_cols=49 Identities=8% Similarity=0.214 Sum_probs=25.2
Q ss_pred EEEECCCCCEEEEEeCC-CcccccccCCCCcEEEEEcCc-ccccceeeecC
Q 033677 63 SLSYNHGGQLLAVASSC-TYQEATVIEEPPQIFIIRIDD-IQQQSACVGSS 111 (114)
Q Consensus 63 ~v~fspdg~~la~~s~d-~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~ 111 (114)
.+.|..+|..|.....+ .+...........+.|.++.. +.+.+.|+..+
T Consensus 18 ~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n 68 (85)
T cd04970 18 TFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQT 68 (85)
T ss_pred EEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEec
Confidence 45666666655432111 111111112334577877755 57888888764
No 429
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=48.65 E-value=1.1e+02 Score=22.99 Aligned_cols=62 Identities=15% Similarity=0.187 Sum_probs=36.2
Q ss_pred cCeEEEEECCC------CCCEEEEEeCCCcEEEEeCCCCeeeEE---e-cCCCCCeEEEEECCCCCEEEEEe
Q 033677 16 VPVNDVVFSPL------SRGAFVTGDNEGYVAAWDAQSRRRLFE---L-PRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 16 ~~V~~v~f~p~------~~~~~~t~s~Dg~I~iwD~~~~~~~~~---~-~~~~~~v~~v~fspdg~~la~~s 77 (114)
..+..+.|.+. .+.+|++.-..+.|...+++....+.. + ......+..|++.|||.++++..
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d 324 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDD 324 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEEC
Confidence 34666666531 234666666667888877764432221 1 23344799999999998777654
No 430
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=48.60 E-value=1.4e+02 Score=23.94 Aligned_cols=55 Identities=18% Similarity=0.281 Sum_probs=37.2
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee--eEEec----C-CCCCeEEEEECCCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR--LFELP----R-FSNSVASLSYNHGG 70 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~--~~~~~----~-~~~~v~~v~fspdg 70 (114)
+.....|+|.| ++++|++--..|.|++++-.++.. +..+. . ...-+..|+|+|+-
T Consensus 29 L~~Pw~maflP-DG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 29 LNKPWALLWGP-DNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCceEEEEcC-CCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 34467899999 988887776679999997655421 11111 1 24567899999874
No 431
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=48.31 E-value=1.2e+02 Score=23.07 Aligned_cols=58 Identities=21% Similarity=0.205 Sum_probs=34.7
Q ss_pred EEECCCCCCEE-EEEeCCC----------cEEEEeCCCCeee--EEecCCCCC--eEEEEECCCCCEEEEEeCC
Q 033677 21 VVFSPLSRGAF-VTGDNEG----------YVAAWDAQSRRRL--FELPRFSNS--VASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 21 v~f~p~~~~~~-~t~s~Dg----------~I~iwD~~~~~~~--~~~~~~~~~--v~~v~fspdg~~la~~s~d 79 (114)
+.|.+ ++..| .+...+. .|.+|.+.+...- ..+...... ...+..++||++|.+.+..
T Consensus 175 ~~W~~-d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~ 247 (414)
T PF02897_consen 175 VSWSD-DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSS 247 (414)
T ss_dssp EEECT-TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEES
T ss_pred EEEeC-CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEc
Confidence 89999 87655 4443331 3778888765322 223332322 5688999999998876654
No 432
>COG3211 PhoX Predicted phosphatase [General function prediction only]
Probab=48.27 E-value=73 Score=26.48 Aligned_cols=59 Identities=14% Similarity=0.213 Sum_probs=35.0
Q ss_pred eEEEEECCCCCCEEEEEeCC-----C-cEEEE-----eCCCCeeeEEec-CCCCCeEEEEECCCCCEEEEEe
Q 033677 18 VNDVVFSPLSRGAFVTGDNE-----G-YVAAW-----DAQSRRRLFELP-RFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~D-----g-~I~iw-----D~~~~~~~~~~~-~~~~~v~~v~fspdg~~la~~s 77 (114)
.-.|+|.| .+++++.-... + ..-+| |-..++...-+. .....++..+|+||++.|.++-
T Consensus 502 PDnl~fD~-~GrLWi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~v 572 (616)
T COG3211 502 PDNLAFDP-WGRLWIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVNV 572 (616)
T ss_pred CCceEECC-CCCEEEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEEe
Confidence 34688999 88876652211 1 22344 222333322222 3456899999999998887654
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=47.79 E-value=1.1e+02 Score=26.12 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=40.9
Q ss_pred ecCeEEEEECCCCC-CEEEEEeCCCcEEEEeCCC-------C----e---------eeEEecCCCCCeEEEEEC--CCCC
Q 033677 15 LVPVNDVVFSPLSR-GAFVTGDNEGYVAAWDAQS-------R----R---------RLFELPRFSNSVASLSYN--HGGQ 71 (114)
Q Consensus 15 ~~~V~~v~f~p~~~-~~~~t~s~Dg~I~iwD~~~-------~----~---------~~~~~~~~~~~v~~v~fs--pdg~ 71 (114)
.+.||.+....+-+ +.|+.+.+||.|.+|..++ . . +...+ .....+..+++. ...+
T Consensus 100 PHtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 100 PHTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSR 178 (717)
T ss_pred CceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcce
Confidence 34578777665333 6788999999999996532 0 0 11111 235678899997 7777
Q ss_pred EEEEEeC
Q 033677 72 LLAVASS 78 (114)
Q Consensus 72 ~la~~s~ 78 (114)
++|+++-
T Consensus 179 lIAVSsN 185 (717)
T PF08728_consen 179 LIAVSSN 185 (717)
T ss_pred EEEEecC
Confidence 8877653
No 434
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.85 E-value=23 Score=31.10 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.4
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCee
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRR 50 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~ 50 (114)
++.+.++.....+ ++..++++-.||.+.+||...+..
T Consensus 232 ~~~~~~~~~~~~~-~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 232 QSAYLPNGQLESR-DGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred hhhcccccccCcc-CCceEEEEEecCCEEeeecCCCce
Confidence 3345555544466 789999999999999999998753
No 435
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=46.72 E-value=1.8e+02 Score=24.67 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=41.0
Q ss_pred cCeEEEEECCCCCCEEEEEeC-----CCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 16 VPVNDVVFSPLSRGAFVTGDN-----EGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~-----Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+.+-+++.+| ++++++-+-+ .=++++.|+.+++.+- ....+....++|.+|++.|.....|
T Consensus 129 ~~Lg~~~~s~-D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~--d~i~~~~~~~~Wa~d~~~lfYt~~d 194 (682)
T COG1770 129 FSLGAASISP-DHNLLAYSVDVLGDEQYTLRFKDLATGEELP--DEITNTSGSFAWAADGKTLFYTRLD 194 (682)
T ss_pred eeeeeeeeCC-CCceEEEEEecccccEEEEEEEecccccccc--hhhcccccceEEecCCCeEEEEEEc
Confidence 4456778888 8777654322 2378888888877432 2334456689999999887776666
No 436
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=46.23 E-value=1.4e+02 Score=23.35 Aligned_cols=59 Identities=8% Similarity=0.153 Sum_probs=39.0
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec---CCCCCeEEEEECCCCCEEEEEe
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP---RFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~---~~~~~v~~v~fspdg~~la~~s 77 (114)
+.++++.|.+ +++.+ .++.+|.+... ...++.-...+ ....++..+.|.++++.++.|.
T Consensus 328 ~~l~~v~~~~-d~~~~-a~G~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~ 389 (398)
T PLN00033 328 FGILDVGYRS-KKEAW-AAGGSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN 389 (398)
T ss_pred cceEEEEEcC-CCcEE-EEECCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcCCCceEEEeC
Confidence 4588899998 66555 55567876655 34455433332 3355788999988888888764
No 437
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=46.06 E-value=1.9e+02 Score=24.67 Aligned_cols=65 Identities=15% Similarity=0.148 Sum_probs=42.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEEeCC---------CCe--ee-EEec--------CCCCCeEEEEECCC---C
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQ---------SRR--RL-FELP--------RFSNSVASLSYNHG---G 70 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~---------~~~--~~-~~~~--------~~~~~v~~v~fspd---g 70 (114)
-.+.|..|.++| ++..++..|..|.+.+.=.+ .++ .. +.+. .....|..+.|.|. +
T Consensus 83 ~~f~v~~i~~n~-~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 83 PLFEVHQISLNP-TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CceeEEEEEECC-CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 367889999999 99999999888855542111 111 11 1111 22457889999996 4
Q ss_pred CEEEEEeCC
Q 033677 71 QLLAVASSC 79 (114)
Q Consensus 71 ~~la~~s~d 79 (114)
..|++=++|
T Consensus 162 ~~l~vLtsd 170 (717)
T PF10168_consen 162 SHLVVLTSD 170 (717)
T ss_pred CeEEEEecC
Confidence 677777777
No 438
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=45.61 E-value=1e+02 Score=24.54 Aligned_cols=47 Identities=13% Similarity=0.132 Sum_probs=26.2
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQ 71 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~ 71 (114)
...++++| +++.++.+ .||...+|.....+.... +.-....|.++++
T Consensus 35 p~~ls~np-ngr~v~V~-g~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n~ 81 (443)
T PF04053_consen 35 PQSLSHNP-NGRFVLVC-GDGEYEIYTALAWRNKAF-----GSGLSFVWSSRNR 81 (443)
T ss_dssp -SEEEE-T-TSSEEEEE-ETTEEEEEETTTTEEEEE-----EE-SEEEE-TSSE
T ss_pred CeeEEECC-CCCEEEEE-cCCEEEEEEccCCccccc-----CceeEEEEecCcc
Confidence 56899999 88877774 477777777544433221 1223566666443
No 439
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=44.07 E-value=55 Score=25.27 Aligned_cols=29 Identities=28% Similarity=0.525 Sum_probs=24.9
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQS 47 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~ 47 (114)
|..|+..+ ..+.+++...+|.|.+||+..
T Consensus 192 I~~v~~d~-~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 192 IVQVAVDP-SRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp EEEEEEET-TTTEEEEEESSE-EEEEEE-S
T ss_pred eeeEEecC-CcCEEEEEeCCCcEEEEEEeC
Confidence 88999999 779999999999999999974
No 440
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=42.98 E-value=45 Score=19.98 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=27.6
Q ss_pred CeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEc-C-cccccceeeecC
Q 033677 60 SVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRI-D-DIQQQSACVGSS 111 (114)
Q Consensus 60 ~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~-~-~~~~~~~~~~~~ 111 (114)
|...+.|-++|..|.......+.. ....+.|.++ . ++.+.+.|.+..
T Consensus 32 P~P~i~W~k~g~~l~~~~~~~~~~-----~~g~L~i~~~~~~~D~G~Y~C~A~N 80 (94)
T cd05848 32 PVPTYRWLRNGTEIDTESDYRYSL-----IDGNLIISNPSEVKDSGRYQCLATN 80 (94)
T ss_pred CCCEEEEEECCeECccCCCceEEe-----eCCeEEEccCCccCcCEEEEEEEEc
Confidence 444788888887775332222221 1235667665 2 578888898754
No 441
>COG4246 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.79 E-value=1.1e+02 Score=23.19 Aligned_cols=54 Identities=11% Similarity=0.222 Sum_probs=33.1
Q ss_pred CeeeEEecCCCCCeEEEEECCCC-CEEEEEeCCCcccccc-------cCCCCcEEEEEcCcc
Q 033677 48 RRRLFELPRFSNSVASLSYNHGG-QLLAVASSCTYQEATV-------IEEPPQIFIIRIDDI 101 (114)
Q Consensus 48 ~~~~~~~~~~~~~v~~v~fspdg-~~la~~s~d~~~~~~~-------~~~~~~i~i~~~~~~ 101 (114)
+..+..-......++++.|-|+| +++|+...-.|-+|.. +.+-+...+++|-+.
T Consensus 63 GlvmTsa~~~fgalSairf~~dG~~fiav~DtG~wfeg~i~rDa~grl~Gl~dgr~~pm~d~ 124 (340)
T COG4246 63 GLVMTSATTLFGALSAIRFLPDGSQFIAVTDTGHWFEGKIQRDANGRLAGLTDGRLTPMRDL 124 (340)
T ss_pred eEEEecccccccchheeEeccCCceeEEEeecCceEEEEEEeccCCCcccccccceeecccC
Confidence 33333333445678999999999 5566665558876632 244445566666554
No 442
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=41.92 E-value=1.5e+02 Score=22.53 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=22.3
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEec
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRRLFELP 55 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~ 55 (114)
..++.++.+|.+..+|.++++.+.+.+
T Consensus 121 ~~v~v~~~~g~l~ald~~tG~~~W~~~ 147 (394)
T PRK11138 121 GKVYIGSEKGQVYALNAEDGEVAWQTK 147 (394)
T ss_pred CEEEEEcCCCEEEEEECCCCCCccccc
Confidence 467778889999999999998876665
No 443
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=41.81 E-value=49 Score=27.47 Aligned_cols=37 Identities=14% Similarity=0.308 Sum_probs=28.5
Q ss_pred eEEEEECCCCC---CEEEEEeCCCcEEEEeCCCCeeeEEec
Q 033677 18 VNDVVFSPLSR---GAFVTGDNEGYVAAWDAQSRRRLFELP 55 (114)
Q Consensus 18 V~~v~f~p~~~---~~~~t~s~Dg~I~iwD~~~~~~~~~~~ 55 (114)
+..++||| +. ..+..-+.|.+|++||....+.++...
T Consensus 168 l~Qa~WHP-~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 168 LKQAAWHP-SSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred eeeccccC-CccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 45678999 54 578888889999999998766665443
No 444
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=39.38 E-value=73 Score=19.09 Aligned_cols=51 Identities=12% Similarity=0.261 Sum_probs=27.4
Q ss_pred EEEEECCCCCEEEEEeCC-CcccccccCCCCcEEEEEcCc-ccccceeeecCC
Q 033677 62 ASLSYNHGGQLLAVASSC-TYQEATVIEEPPQIFIIRIDD-IQQQSACVGSSS 112 (114)
Q Consensus 62 ~~v~fspdg~~la~~s~d-~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~ 112 (114)
..+.|..||+.|-..... .+...........+.|+++.. +.+.+.|+..+.
T Consensus 17 ~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~ 69 (85)
T cd05853 17 IVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTS 69 (85)
T ss_pred cEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcc
Confidence 346676677655321111 111111112234688888866 578888988764
No 445
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=39.15 E-value=34 Score=30.13 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=28.1
Q ss_pred ECCCCCCEEEEEeCCCcEEEEeCC-----CCeeeEEecCCC
Q 033677 23 FSPLSRGAFVTGDNEGYVAAWDAQ-----SRRRLFELPRFS 58 (114)
Q Consensus 23 f~p~~~~~~~t~s~Dg~I~iwD~~-----~~~~~~~~~~~~ 58 (114)
++| |+..|+.+..||.+++|.+. ...|+..++.|+
T Consensus 243 lSp-DGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 243 LSP-DGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eCC-CCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 789 99999999999999998764 235666677666
No 446
>PF08954 DUF1900: Domain of unknown function (DUF1900); InterPro: IPR015049 This domain is predominantly found in the structural protein coronin, and is duplicated in some sequences. It has no known function []. ; PDB: 2B4E_A 2AQ5_A.
Probab=38.28 E-value=1.2e+02 Score=20.12 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=24.5
Q ss_pred ecCeEEEEECCCCCCEEEE-EeCCCcEEEEeCCCCe-eeEEec--CCCCCeEEEEECC
Q 033677 15 LVPVNDVVFSPLSRGAFVT-GDNEGYVAAWDAQSRR-RLFELP--RFSNSVASLSYNH 68 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t-~s~Dg~I~iwD~~~~~-~~~~~~--~~~~~v~~v~fsp 68 (114)
...+.---|.+ +.++|+. |-.|+.|+.|.+.... .+..+. ....+...++|-|
T Consensus 10 s~g~L~P~yD~-dt~llyl~gKGD~~ir~yEv~~~~p~l~~l~~~~s~~~~~G~~~lP 66 (136)
T PF08954_consen 10 SSGVLMPFYDE-DTNLLYLAGKGDGNIRYYEVSDESPYLHYLSEYRSPEPQKGFAFLP 66 (136)
T ss_dssp -SS-EEEEE-T-TT-EEEEEETT-S-EEEEEE-SSTTSEEEEEEE--SS--SEEEE--
T ss_pred CCceeEeeEcC-CCCEEEEEeccCcEEEEEEEcCCCCceEEccccccCCCeEeeEecC
Confidence 34466667888 7776555 4458899999998762 122221 2345556677665
No 447
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=37.39 E-value=7.6 Score=32.49 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=43.6
Q ss_pred cCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECC-CCCEEEEEeCC---Ccc
Q 033677 16 VPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNH-GGQLLAVASSC---TYQ 82 (114)
Q Consensus 16 ~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fsp-dg~~la~~s~d---~~~ 82 (114)
...+.++|-. +..++.+|.....+.++|++....-. ..-....+..+..+| .+.++++.+.+ .|+
T Consensus 155 ~gqns~cwlr-d~klvlaGm~sr~~~ifdlRqs~~~~-~svnTk~vqG~tVdp~~~nY~cs~~dg~iAiwD 223 (783)
T KOG1008|consen 155 DGQNSVCWLR-DTKLVLAGMTSRSVHIFDLRQSLDSV-SSVNTKYVQGITVDPFSPNYFCSNSDGDIAIWD 223 (783)
T ss_pred cCcccccccc-Ccchhhcccccchhhhhhhhhhhhhh-hhhhhhhcccceecCCCCCceeccccCceeecc
Confidence 3456888886 77889999999899999998422111 111233466788888 77788876644 566
No 448
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=36.33 E-value=50 Score=18.84 Aligned_cols=48 Identities=17% Similarity=0.290 Sum_probs=28.5
Q ss_pred CCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcCc-ccccceeeecCC
Q 033677 59 NSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDD-IQQQSACVGSSS 112 (114)
Q Consensus 59 ~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~~ 112 (114)
.|...+.|..++..+.-+ ..+. ......+.|.++.. +.+.+.|+.+..
T Consensus 13 ~P~p~v~W~k~~~~l~~~--~r~~----~~~~g~L~I~~v~~~D~G~Y~C~A~N~ 61 (73)
T cd05852 13 APKPKFSWSKGTELLVNN--SRIS----IWDDGSLEILNITKLDEGSYTCFAENN 61 (73)
T ss_pred eCCCEEEEEeCCEecccC--CCEE----EcCCCEEEECcCChhHCEEEEEEEECC
Confidence 344478888877655321 1111 12234678888855 678888987653
No 449
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=36.28 E-value=1.4e+02 Score=22.98 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=33.8
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 28 RGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+++.++=+..|.+..+|.++++.... ...++....++|. |.++.+|.+-
T Consensus 213 grLwvldsgtGev~~vD~~~G~~e~V-a~vpG~~rGL~f~--G~llvVgmSk 261 (335)
T TIGR03032 213 GKLWLLNSGRGELGYVDPQAGKFQPV-AFLPGFTRGLAFA--GDFAFVGLSK 261 (335)
T ss_pred CeEEEEECCCCEEEEEcCCCCcEEEE-EECCCCCccccee--CCEEEEEecc
Confidence 56777777788888888876643222 2234556788987 8888777664
No 450
>PF12566 DUF3748: Protein of unknown function (DUF3748); InterPro: IPR022223 This domain family is found in bacteria and eukaryotes, and is approximately 120 amino acids in length.
Probab=34.97 E-value=1.1e+02 Score=19.99 Aligned_cols=18 Identities=11% Similarity=0.150 Sum_probs=14.4
Q ss_pred EEEEECCCCCEEEEEeCC
Q 033677 62 ASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 62 ~~v~fspdg~~la~~s~d 79 (114)
.--.|||||++|.....|
T Consensus 71 HvHvfSpDG~~lSFTYND 88 (122)
T PF12566_consen 71 HVHVFSPDGSWLSFTYND 88 (122)
T ss_pred cceEECCCCCEEEEEecc
Confidence 456799999999877766
No 451
>smart00135 LY Low-density lipoprotein-receptor YWTD domain. Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.
Probab=34.48 E-value=61 Score=15.66 Aligned_cols=31 Identities=10% Similarity=-0.023 Sum_probs=19.7
Q ss_pred cCeEEEEECCCCCC-EEEEEeCCCcEEEEeCCC
Q 033677 16 VPVNDVVFSPLSRG-AFVTGDNEGYVAAWDAQS 47 (114)
Q Consensus 16 ~~V~~v~f~p~~~~-~~~t~s~Dg~I~iwD~~~ 47 (114)
..+++++|.| ..+ ++.+-...+.|...+++.
T Consensus 9 ~~~~~la~d~-~~~~lYw~D~~~~~I~~~~~~g 40 (43)
T smart00135 9 GHPNGLAVDW-IEGRLYWTDWGLDVIEVANLDG 40 (43)
T ss_pred CCcCEEEEee-cCCEEEEEeCCCCEEEEEeCCC
Confidence 3467899999 554 455555556777666653
No 452
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=32.43 E-value=2.4e+02 Score=21.82 Aligned_cols=53 Identities=9% Similarity=0.199 Sum_probs=36.5
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCC-------CCeeeEEecC-----CCCCeEEEEECCCCC
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQ-------SRRRLFELPR-----FSNSVASLSYNHGGQ 71 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~-------~~~~~~~~~~-----~~~~v~~v~fspdg~ 71 (114)
-+.|+|+| .+.++++...-+...+||.. ....+..++. .....+.+.|+....
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~ 89 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT 89 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc
Confidence 45899999 88888888778899999986 1222334432 134678888886443
No 453
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=31.93 E-value=1.9e+02 Score=21.12 Aligned_cols=38 Identities=16% Similarity=0.312 Sum_probs=27.2
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCe
Q 033677 21 VVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61 (114)
Q Consensus 21 v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v 61 (114)
+-..| ++++|+.+..++ .+||..+.+.++.++..+..+
T Consensus 175 ~~llP-dG~lFi~an~~s--~i~d~~~n~v~~~lP~lPg~~ 212 (243)
T PF07250_consen 175 VHLLP-DGNLFIFANRGS--IIYDYKTNTVVRTLPDLPGGP 212 (243)
T ss_pred EEEcC-CCCEEEEEcCCc--EEEeCCCCeEEeeCCCCCCCc
Confidence 45578 899998887654 566988887777777655543
No 454
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=31.70 E-value=1.7e+02 Score=21.79 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=34.1
Q ss_pred ecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCC
Q 033677 15 LVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRF 57 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~ 57 (114)
-+=||+|...+ ++++|++.-.-..|.+.|.++++.+..+.+.
T Consensus 143 ~~HiNsV~~~~-~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~ 184 (299)
T PF14269_consen 143 YFHINSVDKDD-DGDYLISSRNTSTIYKIDPSTGKIIWRLGGK 184 (299)
T ss_pred ccEeeeeeecC-CccEEEEecccCEEEEEECCCCcEEEEeCCC
Confidence 44478888888 8899999988889999999998888777543
No 455
>PF09142 TruB_C: tRNA Pseudouridine synthase II, C terminal; InterPro: IPR015225 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SGV_B.
Probab=31.46 E-value=63 Score=17.93 Aligned_cols=14 Identities=21% Similarity=0.468 Sum_probs=10.1
Q ss_pred EEEECCCCCEEEEE
Q 033677 63 SLSYNHGGQLLAVA 76 (114)
Q Consensus 63 ~v~fspdg~~la~~ 76 (114)
...|.|||+++|..
T Consensus 29 ~aa~~pdG~lvAL~ 42 (56)
T PF09142_consen 29 VAAFAPDGRLVALL 42 (56)
T ss_dssp EEEE-TTS-EEEEE
T ss_pred EEEECCCCcEEEEE
Confidence 56889999999987
No 456
>COG3504 VirB9 Type IV secretory pathway, VirB9 components [Intracellular trafficking and secretion]
Probab=31.15 E-value=2.2e+02 Score=21.06 Aligned_cols=67 Identities=12% Similarity=0.046 Sum_probs=41.1
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC--CcccccccCCCCcEEEEEcCc
Q 033677 30 AFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC--TYQEATVIEEPPQIFIIRIDD 100 (114)
Q Consensus 30 ~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d--~~~~~~~~~~~~~i~i~~~~~ 100 (114)
....++-|+.+++|.+..+.... +......++.+.|-++.++.+.+-+| .|.-. ...+.+||+++..
T Consensus 28 ~~~~~~~d~~ir~~~y~p~~~~~-~~~a~g~~~~i~~~~~E~I~~~~lGd~~s~~~~---~~~~~l~IKP~~~ 96 (265)
T COG3504 28 APTRLGRDNRIRVYPYLPGAVYR-LYAALGFVTDIELAPGEEISAVVLGDAVSGIGE---SLRNHLFIKPLEK 96 (265)
T ss_pred cccccCcCcceeEEEeccCcceE-EeeeeceEEEEEecCCCEEEEEEecccccCccc---cccceEEeccccc
Confidence 34456778899999888776433 33444578899998876666545455 33311 2335566665543
No 457
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=30.90 E-value=1.1e+02 Score=27.26 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.7
Q ss_pred eeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 50 RLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 50 ~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
..+.+..+....++++|+-+.+.|++|+..
T Consensus 1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~ 1122 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHA 1122 (1516)
T ss_pred cchhhhccccceeeEEeecCCceEEeeecc
Confidence 344566788889999999999999999865
No 458
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=30.79 E-value=3.3e+02 Score=23.02 Aligned_cols=58 Identities=9% Similarity=0.191 Sum_probs=39.6
Q ss_pred EEECCCCCCEEEEEeCCC-cEEEEeCCC--CeeeEEecC-CCCCeEEEEECCCCCEEEEEeCC
Q 033677 21 VVFSPLSRGAFVTGDNEG-YVAAWDAQS--RRRLFELPR-FSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 21 v~f~p~~~~~~~t~s~Dg-~I~iwD~~~--~~~~~~~~~-~~~~v~~v~fspdg~~la~~s~d 79 (114)
|+|+| ..+.++.+|.-. .|.+|.+.. ...+.+++. .......++|=.|..+|+..+.-
T Consensus 344 iAfn~-kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGkq 405 (671)
T PF15390_consen 344 IAFNP-KAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGKQ 405 (671)
T ss_pred eeeCC-cCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEeccc
Confidence 69999 888999988864 677798764 344555542 24456789998777666554443
No 459
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=30.49 E-value=2.3e+02 Score=21.16 Aligned_cols=61 Identities=15% Similarity=0.294 Sum_probs=38.5
Q ss_pred CeEEEEECCCCCCEEEEEeCC------CcEEEEeCCCCeeeEEec---------------CCCCCeEEEEECCCCCEEEE
Q 033677 17 PVNDVVFSPLSRGAFVTGDNE------GYVAAWDAQSRRRLFELP---------------RFSNSVASLSYNHGGQLLAV 75 (114)
Q Consensus 17 ~V~~v~f~p~~~~~~~t~s~D------g~I~iwD~~~~~~~~~~~---------------~~~~~v~~v~fspdg~~la~ 75 (114)
-..+|++.+ ++.++++.=.+ -.|..+|.. ++....+. .....+-+++++|||+.|.+
T Consensus 86 D~Egi~~~~-~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~ 163 (326)
T PF13449_consen 86 DPEGIAVPP-DGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFA 163 (326)
T ss_pred ChhHeEEec-CCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEE
Confidence 355888855 66666555445 577778866 54443331 12345679999999996666
Q ss_pred EeCC
Q 033677 76 ASSC 79 (114)
Q Consensus 76 ~s~d 79 (114)
+...
T Consensus 164 ~~E~ 167 (326)
T PF13449_consen 164 AMES 167 (326)
T ss_pred EECc
Confidence 5554
No 460
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=30.11 E-value=2.3e+02 Score=21.08 Aligned_cols=61 Identities=18% Similarity=0.335 Sum_probs=38.8
Q ss_pred ecCeEEEEECCCCCCEEEEEe------CCCcEEEEeCCCCeeeEEecC-----CCCCeEEEEECC-CC-CEEEEEe
Q 033677 15 LVPVNDVVFSPLSRGAFVTGD------NEGYVAAWDAQSRRRLFELPR-----FSNSVASLSYNH-GG-QLLAVAS 77 (114)
Q Consensus 15 ~~~V~~v~f~p~~~~~~~t~s------~Dg~I~iwD~~~~~~~~~~~~-----~~~~v~~v~fsp-dg-~~la~~s 77 (114)
...|+++.|.. +.++++.|. ....+-.||+.+.. ...+.. .+.+|+.+.+.. |+ +++++|.
T Consensus 36 ~G~V~~l~~~~-~~~Llv~G~ft~~~~~~~~la~yd~~~~~-w~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~ 109 (281)
T PF12768_consen 36 SGTVTDLQWAS-NNQLLVGGNFTLNGTNSSNLATYDFKNQT-WSSLGGGSSNSIPGPVTALTFISNDGSNFWVAGR 109 (281)
T ss_pred eEEEEEEEEec-CCEEEEEEeeEECCCCceeEEEEecCCCe-eeecCCcccccCCCcEEEEEeeccCCceEEEece
Confidence 45699999986 666777664 34577789998764 323333 357888888743 33 3444443
No 461
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=29.79 E-value=1.5e+02 Score=21.00 Aligned_cols=25 Identities=4% Similarity=0.122 Sum_probs=16.2
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeEEec
Q 033677 30 AFVTGDNEGYVAAWDAQSRRRLFELP 55 (114)
Q Consensus 30 ~~~t~s~Dg~I~iwD~~~~~~~~~~~ 55 (114)
+|+..+. +.|.+|++.+++.++.+.
T Consensus 240 yli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 240 YLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEECC-CEEEEEECcCCcEEEEEE
Confidence 4444444 458888888887666654
No 462
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=29.70 E-value=79 Score=15.88 Aligned_cols=22 Identities=23% Similarity=0.530 Sum_probs=14.1
Q ss_pred CCEEEEEeCCC------cEEEEeCCCCe
Q 033677 28 RGAFVTGDNEG------YVAAWDAQSRR 49 (114)
Q Consensus 28 ~~~~~t~s~Dg------~I~iwD~~~~~ 49 (114)
+.+++.||.++ .+..||.++.+
T Consensus 12 ~~iyv~GG~~~~~~~~~~v~~yd~~~~~ 39 (47)
T PF01344_consen 12 NKIYVIGGYDGNNQPTNSVEVYDPETNT 39 (47)
T ss_dssp TEEEEEEEBESTSSBEEEEEEEETTTTE
T ss_pred CEEEEEeeecccCceeeeEEEEeCCCCE
Confidence 36777787765 55566666543
No 463
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=29.69 E-value=67 Score=20.32 Aligned_cols=21 Identities=14% Similarity=0.306 Sum_probs=16.7
Q ss_pred CCCCeEEEEECCCCCEEEEEe
Q 033677 57 FSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 57 ~~~~v~~v~fspdg~~la~~s 77 (114)
.++.+.+-.|||||++++.-+
T Consensus 11 i~Gv~AAGefs~DGkLv~Ykg 31 (109)
T COG4831 11 IKGVMAAGEFSPDGKLVEYKG 31 (109)
T ss_pred ccceeEeceeCCCCceEEeeC
Confidence 456677889999999998755
No 464
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=29.57 E-value=1.2e+02 Score=23.86 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=24.4
Q ss_pred EECCCCCC-EEEEEeCCC--cEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEE
Q 033677 22 VFSPLSRG-AFVTGDNEG--YVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAV 75 (114)
Q Consensus 22 ~f~p~~~~-~~~t~s~Dg--~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~ 75 (114)
+|.+ +++ +|+.+..|| .+.+-|+.+++..+...+.........++|+++.+..
T Consensus 42 ~ft~-dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Y 97 (386)
T PF14583_consen 42 CFTD-DGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYY 97 (386)
T ss_dssp -B-T-TS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEE
T ss_pred CcCC-CCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEE
Confidence 5677 774 555555576 4555688888754433322222224666787776654
No 465
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=29.42 E-value=52 Score=27.89 Aligned_cols=65 Identities=11% Similarity=0.143 Sum_probs=41.1
Q ss_pred CeecCeEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEec-------CC-----CCCeEEEEECCCCCEEEEEeCC
Q 033677 13 HHLVPVNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELP-------RF-----SNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 13 ~~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~-------~~-----~~~v~~v~fspdg~~la~~s~d 79 (114)
.|.+|+..++|.+ .+.++++++..|. .+.+++..+.+.+.. .+ ...|..++|+....+.++++.+
T Consensus 313 AhkspiSaLcfdq-sgsllViasi~g~-nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s~~r~~gsc~ 389 (788)
T KOG2109|consen 313 AHKSPISALCFDQ-SGSLLVIASITGR-NVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVSTIRTAGSCE 389 (788)
T ss_pred eecCccccccccc-CceEEEEEeeccc-eeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhcceEeecccC
Confidence 4567788999999 8999999998773 333333332222211 11 1224567888888888877755
No 466
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=29.34 E-value=27 Score=30.75 Aligned_cols=62 Identities=19% Similarity=0.157 Sum_probs=33.9
Q ss_pred eEEEEECCC--CCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeE-----------EEEECCCCCEEEEEeCCC
Q 033677 18 VNDVVFSPL--SRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVA-----------SLSYNHGGQLLAVASSCT 80 (114)
Q Consensus 18 V~~v~f~p~--~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~-----------~v~fspdg~~la~~s~d~ 80 (114)
+.-|.|.|. ..-.+..+-.++.|++........ ..+..|...++ --.+||||+.||.++.|.
T Consensus 183 ~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG 257 (1283)
T KOG1916|consen 183 PQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDG 257 (1283)
T ss_pred cceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCC
Confidence 344555551 234555566677888754433211 12223322221 223799999999999884
No 467
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=27.79 E-value=2.6e+02 Score=20.76 Aligned_cols=33 Identities=24% Similarity=0.219 Sum_probs=26.1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCe
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSV 61 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v 61 (114)
.-++.|.++|.|.+.|.+....+.+.+-..-|+
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv 228 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPV 228 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCce
Confidence 578999999999999999888777766444444
No 468
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=27.76 E-value=2.6e+02 Score=21.50 Aligned_cols=56 Identities=14% Similarity=0.089 Sum_probs=42.8
Q ss_pred eEEEEECCCCCCEEEEEeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEE
Q 033677 18 VNDVVFSPLSRGAFVTGDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLA 74 (114)
Q Consensus 18 V~~v~f~p~~~~~~~t~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la 74 (114)
...|+-.| ++...+++...|.|--.|-.+++....--+.......|...|||....
T Consensus 64 p~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Wi 119 (353)
T COG4257 64 PFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWI 119 (353)
T ss_pred ccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeE
Confidence 35778888 888999998889999999999986544445556667788888876544
No 469
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=27.51 E-value=67 Score=16.47 Aligned_cols=23 Identities=13% Similarity=0.323 Sum_probs=13.2
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCe
Q 033677 27 SRGAFVTGDNEG------YVAAWDAQSRR 49 (114)
Q Consensus 27 ~~~~~~t~s~Dg------~I~iwD~~~~~ 49 (114)
++.+++.||.+. .+.+||+.+++
T Consensus 12 ~~~i~v~GG~~~~~~~~~d~~~~d~~~~~ 40 (49)
T PF13418_consen 12 DNSIYVFGGRDSSGSPLNDLWIFDIETNT 40 (49)
T ss_dssp TTEEEEE--EEE-TEE---EEEEETTTTE
T ss_pred CCeEEEECCCCCCCcccCCEEEEECCCCE
Confidence 456777777653 56678887764
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=27.41 E-value=58 Score=22.03 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=12.0
Q ss_pred eEEEEECCCCCEEEEEe
Q 033677 61 VASLSYNHGGQLLAVAS 77 (114)
Q Consensus 61 v~~v~fspdg~~la~~s 77 (114)
..+++||.||++.+++.
T Consensus 7 ~~~l~WS~Dg~laV~t~ 23 (173)
T PF12657_consen 7 PNALAWSEDGQLAVATG 23 (173)
T ss_pred CcCeeECCCCCEEEEcC
Confidence 46899999996544443
No 471
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=27.05 E-value=1.2e+02 Score=23.43 Aligned_cols=40 Identities=20% Similarity=0.157 Sum_probs=28.2
Q ss_pred CcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEeCC
Q 033677 38 GYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVASSC 79 (114)
Q Consensus 38 g~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s~d 79 (114)
+.+.++|.++++.+-.+..- -.-.+.+||||+.++++.+.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~ 56 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETF 56 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEE
T ss_pred ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEE
Confidence 47999999998876665532 22347789999999887654
No 472
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=26.67 E-value=2.2e+02 Score=25.42 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=30.6
Q ss_pred EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 34 GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 34 ~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
++....|++|+..+++.++.-..+..++.++...-.|..+|+|.
T Consensus 844 A~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgD 887 (1096)
T KOG1897|consen 844 AGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGD 887 (1096)
T ss_pred EecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEee
Confidence 34567899999888766655556666777777766677776664
No 473
>PF13964 Kelch_6: Kelch motif
Probab=26.63 E-value=85 Score=16.21 Aligned_cols=21 Identities=19% Similarity=0.401 Sum_probs=12.9
Q ss_pred CEEEEEeCCC------cEEEEeCCCCe
Q 033677 29 GAFVTGDNEG------YVAAWDAQSRR 49 (114)
Q Consensus 29 ~~~~t~s~Dg------~I~iwD~~~~~ 49 (114)
.+++.||.++ .+.+||.++.+
T Consensus 13 ~iyv~GG~~~~~~~~~~v~~yd~~t~~ 39 (50)
T PF13964_consen 13 KIYVFGGYDNSGKYSNDVERYDPETNT 39 (50)
T ss_pred EEEEECCCCCCCCccccEEEEcCCCCc
Confidence 5666666644 56667776653
No 474
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=26.56 E-value=3.1e+02 Score=21.79 Aligned_cols=28 Identities=18% Similarity=0.382 Sum_probs=23.5
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEecC
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRRLFELPR 56 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~ 56 (114)
..++.++.+|.|..+|.++++.+.++..
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 5777888899999999999998877653
No 475
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=26.55 E-value=71 Score=25.02 Aligned_cols=43 Identities=21% Similarity=0.245 Sum_probs=26.7
Q ss_pred EeCCCcEEEEeCCCCeeeEEecCCCCCeEEEEECCCCCEEEEEe
Q 033677 34 GDNEGYVAAWDAQSRRRLFELPRFSNSVASLSYNHGGQLLAVAS 77 (114)
Q Consensus 34 ~s~Dg~I~iwD~~~~~~~~~~~~~~~~v~~v~fspdg~~la~~s 77 (114)
+-.+|.+..||..+...-..+ +.-.-.+.++.|||+..+..+=
T Consensus 195 g~~~GRl~~YD~~tK~~~VLl-d~L~F~NGlaLS~d~sfvl~~E 237 (376)
T KOG1520|consen 195 GDPTGRLFRYDPSTKVTKVLL-DGLYFPNGLALSPDGSFVLVAE 237 (376)
T ss_pred CCCccceEEecCcccchhhhh-hcccccccccCCCCCCEEEEEe
Confidence 334678888887765432222 2223346899999998776543
No 476
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=25.43 E-value=2.6e+02 Score=24.06 Aligned_cols=19 Identities=16% Similarity=0.377 Sum_probs=16.5
Q ss_pred CCcEEEEeCCCCeeeEEec
Q 033677 37 EGYVAAWDAQSRRRLFELP 55 (114)
Q Consensus 37 Dg~I~iwD~~~~~~~~~~~ 55 (114)
+|.|+.+|.++++.+..+.
T Consensus 335 ~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred CcEEEEEECCCCcEeeEEe
Confidence 6889999999999887764
No 477
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=25.41 E-value=82 Score=17.31 Aligned_cols=51 Identities=10% Similarity=0.066 Sum_probs=23.1
Q ss_pred CeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcCc-ccccceeeec
Q 033677 60 SVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDD-IQQQSACVGS 110 (114)
Q Consensus 60 ~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~ 110 (114)
|...+.|-.+|+.+...................+.|.++.. +.+.+.|+..
T Consensus 12 P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~ 63 (75)
T cd05750 12 PSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVE 63 (75)
T ss_pred CCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEE
Confidence 44466666666554322111100001111223455666644 5677778764
No 478
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.05 E-value=2.9e+02 Score=23.21 Aligned_cols=29 Identities=21% Similarity=0.207 Sum_probs=23.5
Q ss_pred eecCeEEEEECCCCCCEEEEEeCCCcEEEE
Q 033677 14 HLVPVNDVVFSPLSRGAFVTGDNEGYVAAW 43 (114)
Q Consensus 14 ~~~~V~~v~f~p~~~~~~~t~s~Dg~I~iw 43 (114)
-.+.|..|..+| .|..++-.|.+|.+..+
T Consensus 102 V~feV~~vl~s~-~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 102 VLFEVYQVLLSP-TGSHVALIGIKGLMVME 130 (741)
T ss_pred ceEEEEEEEecC-CCceEEEecCCeeEEEE
Confidence 356778888999 99999999999977654
No 479
>PRK14751 tetracycline resistance determinant leader peptide; Provisional
Probab=25.03 E-value=49 Score=15.64 Aligned_cols=11 Identities=18% Similarity=0.474 Sum_probs=8.6
Q ss_pred CCCcEEEEeCC
Q 033677 36 NEGYVAAWDAQ 46 (114)
Q Consensus 36 ~Dg~I~iwD~~ 46 (114)
.|..|.-||+-
T Consensus 13 sdksi~hwdf~ 23 (28)
T PRK14751 13 SDKSIYHWDFY 23 (28)
T ss_pred CcCceeeeeeh
Confidence 47889999974
No 480
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=25.00 E-value=3e+02 Score=20.58 Aligned_cols=63 Identities=16% Similarity=0.291 Sum_probs=38.3
Q ss_pred CCeecCeEEEEECCCCCCEEEEEeCC-----C--c-------EEE--EeCCC-CeeeE--Eec--C-----CCCCeEEEE
Q 033677 12 RHHLVPVNDVVFSPLSRGAFVTGDNE-----G--Y-------VAA--WDAQS-RRRLF--ELP--R-----FSNSVASLS 65 (114)
Q Consensus 12 ~~~~~~V~~v~f~p~~~~~~~t~s~D-----g--~-------I~i--wD~~~-~~~~~--~~~--~-----~~~~v~~v~ 65 (114)
........+|++.| ++..|+++... + . +++ ||..+ +.... .++ . ....|+.+.
T Consensus 143 ~~~N~G~E~la~~~-dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~ 221 (326)
T PF13449_consen 143 RRNNRGFEGLAVSP-DGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIA 221 (326)
T ss_pred ccCCCCeEEEEECC-CCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEE
Confidence 34567789999999 98866554432 2 1 344 55554 21222 222 1 345688888
Q ss_pred ECCCCCEEEE
Q 033677 66 YNHGGQLLAV 75 (114)
Q Consensus 66 fspdg~~la~ 75 (114)
+-+++++|+.
T Consensus 222 al~d~~lLvL 231 (326)
T PF13449_consen 222 ALPDGRLLVL 231 (326)
T ss_pred EECCCcEEEE
Confidence 8888887765
No 481
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=24.93 E-value=2.9e+02 Score=21.94 Aligned_cols=47 Identities=19% Similarity=0.193 Sum_probs=30.0
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeEEecC--CCCCeEEEEECCCCCEEEEEeC
Q 033677 29 GAFVTGDNEGYVAAWDAQSRRRLFELPR--FSNSVASLSYNHGGQLLAVASS 78 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~~~~~~~~--~~~~v~~v~fspdg~~la~~s~ 78 (114)
.+|..-+.||.+.+++-+.-.-.+.++. .++| ++|.|.-..|.++++
T Consensus 146 ~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 146 DFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTDSFVTASS 194 (418)
T ss_pred eEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCCEEEEecC
Confidence 6889999999999999765432233332 3444 566665555555554
No 482
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=24.68 E-value=2.9e+02 Score=23.74 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=33.5
Q ss_pred CeEEEEEC--CCCCCEEEEEeCCCcEEEEeCCC--CeeeE-EecCCCCCeEEEEECCC
Q 033677 17 PVNDVVFS--PLSRGAFVTGDNEGYVAAWDAQS--RRRLF-ELPRFSNSVASLSYNHG 69 (114)
Q Consensus 17 ~V~~v~f~--p~~~~~~~t~s~Dg~I~iwD~~~--~~~~~-~~~~~~~~v~~v~fspd 69 (114)
.+++|+++ . ..++||+++....|.+|=+.. .+... .-..+...|.+|+|-++
T Consensus 165 SaWGLdIh~~~-~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~ 221 (717)
T PF08728_consen 165 SAWGLDIHDYK-KSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDD 221 (717)
T ss_pred ceeEEEEEecC-cceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecC
Confidence 57899998 6 667888888777777764432 21111 11135567889999664
No 483
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=24.04 E-value=69 Score=25.42 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=18.5
Q ss_pred CCCEEEEEeCCCcEEEEeCCC
Q 033677 27 SRGAFVTGDNEGYVAAWDAQS 47 (114)
Q Consensus 27 ~~~~~~t~s~Dg~I~iwD~~~ 47 (114)
.+-.|++|+.|..+.+||++.
T Consensus 340 ~Gy~lvtgGTDnHlvLvDLr~ 360 (477)
T KOG2467|consen 340 RGYKLVTGGTDNHLVLVDLRP 360 (477)
T ss_pred cCceEecCCccceEEEEeccc
Confidence 356799999999999999986
No 484
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=23.89 E-value=1.6e+02 Score=17.12 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=12.6
Q ss_pred cEEEEEcCc-ccccceeeecC
Q 033677 92 QIFIIRIDD-IQQQSACVGSS 111 (114)
Q Consensus 92 ~i~i~~~~~-~~~~~~~~~~~ 111 (114)
.+-|.++.. +.+.+.|+..+
T Consensus 48 ~L~I~~v~~~D~G~YtC~A~n 68 (85)
T cd05854 48 DLVIVNAQLSHAGTYTCTAQT 68 (85)
T ss_pred EEEEccCChhhCeEEEEEEec
Confidence 456666644 56777787654
No 485
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=23.58 E-value=1.3e+02 Score=17.55 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=25.3
Q ss_pred eEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcC--cccccceeeecC
Q 033677 61 VASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRID--DIQQQSACVGSS 111 (114)
Q Consensus 61 v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~--~~~~~~~~~~~~ 111 (114)
...+.|..+|..+.......+. .....+.|+++. ++.+.+.|+...
T Consensus 33 ~p~i~W~k~~~~l~~~~~~~~~-----~~~~~L~i~~~~~~~d~G~Y~C~a~N 80 (91)
T cd04967 33 PPTYRWLMNGTEIDDEPDSRYS-----LVGGNLVISNPSKAKDAGRYQCLASN 80 (91)
T ss_pred CCEEEEEECCEECCCCCCCCEE-----EECCEEEEecCCccCCCEEEEEEEEc
Confidence 3467787777655322111111 112355666653 578888898764
No 486
>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E.
Probab=22.25 E-value=1.3e+02 Score=17.36 Aligned_cols=19 Identities=16% Similarity=0.386 Sum_probs=14.3
Q ss_pred CCEEEEEeCCCcEEEEeCC
Q 033677 28 RGAFVTGDNEGYVAAWDAQ 46 (114)
Q Consensus 28 ~~~~~t~s~Dg~I~iwD~~ 46 (114)
.+.|+.-+.+|.|++|.+.
T Consensus 29 ~N~Fav~~e~~~iKIfkyd 47 (63)
T PF14157_consen 29 HNHFAVVDEDGQIKIFKYD 47 (63)
T ss_dssp TTEEEEE-ETTEEEEEEEE
T ss_pred CCEEEEEecCCeEEEEEeC
Confidence 4789999999999986544
No 487
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=21.35 E-value=58 Score=18.79 Aligned_cols=51 Identities=2% Similarity=-0.018 Sum_probs=27.3
Q ss_pred CeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcCc-ccccceeeecC
Q 033677 60 SVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDD-IQQQSACVGSS 111 (114)
Q Consensus 60 ~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~ 111 (114)
|...+.|..+|..+... .+.+..-....+...+.|+++.. +.+.+.|.+..
T Consensus 11 P~P~i~W~k~~~~i~~~-~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N 62 (75)
T cd05892 11 PPPKIFWKRNNEMVQYN-TDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVN 62 (75)
T ss_pred CCCeEEEEECCEECcCC-CCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEc
Confidence 33467887777655421 12221111111223577888864 67888888754
No 488
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=21.22 E-value=4.3e+02 Score=21.01 Aligned_cols=38 Identities=13% Similarity=0.388 Sum_probs=25.9
Q ss_pred CEEEEEeCCCcEEEEeCCCCe-----eeEEecCCCCCeEEEEEC
Q 033677 29 GAFVTGDNEGYVAAWDAQSRR-----RLFELPRFSNSVASLSYN 67 (114)
Q Consensus 29 ~~~~t~s~Dg~I~iwD~~~~~-----~~~~~~~~~~~v~~v~fs 67 (114)
..|++||.+|.+++|+...+. .+.+ .....||..+..-
T Consensus 38 d~IivGS~~G~LrIy~P~~~~~~~~~lllE-~~l~~PILqv~~G 80 (418)
T PF14727_consen 38 DKIIVGSYSGILRIYDPSGNEFQPEDLLLE-TQLKDPILQVECG 80 (418)
T ss_pred cEEEEeccccEEEEEccCCCCCCCccEEEE-EecCCcEEEEEec
Confidence 689999999999999986532 1111 2345677766654
No 489
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=20.90 E-value=1.8e+02 Score=16.55 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=26.3
Q ss_pred CCCeEEEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcC-----cccccceeeecC
Q 033677 58 SNSVASLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRID-----DIQQQSACVGSS 111 (114)
Q Consensus 58 ~~~v~~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~-----~~~~~~~~~~~~ 111 (114)
..|...+.|..+|..|......... .......+.|..+. ++.+.+.|++..
T Consensus 9 G~P~P~v~W~k~g~~~~~~~~~~~~---~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N 64 (77)
T cd05875 9 GNPVPTFQWTRNGKFFNVAKDPRVS---MRRRSGTLVIDFSGGGRPEDYEGEYQCFARN 64 (77)
T ss_pred ccCCCEEEEEECCEEccCcCCCcEE---EeCCCceEEEeccCCCCCCCCCEEEEEEEEe
Confidence 3455567887777655322111111 11223456666552 346777888754
No 490
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=20.51 E-value=1.1e+02 Score=16.85 Aligned_cols=45 Identities=7% Similarity=0.118 Sum_probs=22.7
Q ss_pred EEEECCCCCEEEEEeCCCcccccccCCCCcEEEEEcCc-ccccceeeecC
Q 033677 63 SLSYNHGGQLLAVASSCTYQEATVIEEPPQIFIIRIDD-IQQQSACVGSS 111 (114)
Q Consensus 63 ~v~fspdg~~la~~s~d~~~~~~~~~~~~~i~i~~~~~-~~~~~~~~~~~ 111 (114)
.+.|..+|..+.....+. ........+.|.++.. +.+.+.|.+..
T Consensus 17 ~i~W~~~g~~~~~~~~~~----~~~~~~~~L~i~~v~~~D~G~Y~C~A~N 62 (76)
T cd04978 17 TITWRLNGVPIEELPPDP----RRRVDGGTLILSNVQPNDTAVYQCNASN 62 (76)
T ss_pred EEEEEECCEECCCCCCcc----eEEccCCEEEECCCChhhCEEEEEEEEc
Confidence 466666665443222110 0112234566777754 46677787653
Done!