BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>033679
MTSIGWVLIFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDP
SVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQLFVARATRREVSCEANQT

High Scoring Gene Products

Symbol, full name Information P value
CPL4
C-terminal domain phosphatase-like 4
protein from Arabidopsis thaliana 9.9e-13
CPL3
C-terminal domain phosphatase-like 3
protein from Arabidopsis thaliana 1.1e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  033679
        (113 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:4010714056 - symbol:CPL4 "C-terminal domain ph...   176  9.9e-13   1
TAIR|locus:2051164 - symbol:CPL3 "C-terminal domain phosp...   154  1.1e-09   1


>TAIR|locus:4010714056 [details] [associations]
            symbol:CPL4 "C-terminal domain phosphatase-like 4"
            species:3702 "Arabidopsis thaliana" [GO:0004721 "phosphoprotein
            phosphatase activity" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
            [GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0009651
            "response to salt stress" evidence=IEP] InterPro:IPR004274
            InterPro:IPR011947 Pfam:PF03031 PROSITE:PS50969 SMART:SM00577
            InterPro:IPR001357 Pfam:PF00533 GO:GO:0005634 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0006355 GO:GO:0046872
            Gene3D:3.40.50.1000 InterPro:IPR023214 SUPFAM:SSF56784
            GO:GO:0009651 GO:GO:0006351 GO:GO:0003723 GO:GO:0004721
            SMART:SM00292 SUPFAM:SSF52113 PROSITE:PS50172 EMBL:AB013396
            eggNOG:COG5190 TIGRFAMs:TIGR02250 EMBL:DQ503426 IPI:IPI00570463
            RefSeq:NP_001078764.1 UniGene:At.71283 ProteinModelPortal:Q00IB6
            SMR:Q00IB6 STRING:Q00IB6 PaxDb:Q00IB6 PRIDE:Q00IB6
            EnsemblPlants:AT5G58003.1 GeneID:5008312 KEGG:ath:AT5G58003
            TAIR:At5g58003 HOGENOM:HOG000239575 OMA:ILDDTEY PhylomeDB:Q00IB6
            ProtClustDB:CLSN2699127 Genevestigator:Q00IB6 Uniprot:Q00IB6
        Length = 440

 Score = 176 (67.0 bits), Expect = 9.9e-13, P = 9.9e-13
 Identities = 32/58 (55%), Positives = 42/58 (72%)

Query:    17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEK 74
             ++E+LKGCK+VFS  FP+K     H LWK+ E+LGATC+ E+D SVTHVV+     EK
Sbjct:   338 RKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVGTEK 395


>TAIR|locus:2051164 [details] [associations]
            symbol:CPL3 "C-terminal domain phosphatase-like 3"
            species:3702 "Arabidopsis thaliana" [GO:0004721 "phosphoprotein
            phosphatase activity" evidence=IEA] [GO:0005622 "intracellular"
            evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IEA;IDA]
            [GO:0008420 "CTD phosphatase activity" evidence=ISS] [GO:0008022
            "protein C-terminus binding" evidence=IPI] [GO:0009651 "response to
            salt stress" evidence=IEP] [GO:0009788 "negative regulation of
            abscisic acid mediated signaling pathway" evidence=IMP] [GO:0000394
            "RNA splicing, via endonucleolytic cleavage and ligation"
            evidence=RCA] [GO:0006366 "transcription from RNA polymerase II
            promoter" evidence=RCA] InterPro:IPR004274 InterPro:IPR011947
            Pfam:PF03031 PROSITE:PS50969 SMART:SM00577 InterPro:IPR001357
            Pfam:PF00533 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0006355 GO:GO:0046872 Gene3D:3.40.50.1000 InterPro:IPR023214
            SUPFAM:SSF56784 GO:GO:0009651 GO:GO:0006351 GO:GO:0003723
            GO:GO:0009788 GO:GO:0004721 SMART:SM00292 SUPFAM:SSF52113
            PROSITE:PS50172 eggNOG:COG5190 EMBL:AC002332 EMBL:AF486633
            IPI:IPI00534740 PIR:G84746 RefSeq:NP_180912.2 UniGene:At.43643
            ProteinModelPortal:Q8LL04 SMR:Q8LL04 STRING:Q8LL04 PaxDb:Q8LL04
            PRIDE:Q8LL04 EnsemblPlants:AT2G33540.1 GeneID:817919
            KEGG:ath:AT2G33540 TAIR:At2g33540 HOGENOM:HOG000085035
            InParanoid:Q8LL04 OMA:HPLWQTA PhylomeDB:Q8LL04
            ProtClustDB:CLSN2680006 Genevestigator:Q8LL04 TIGRFAMs:TIGR02250
            Uniprot:Q8LL04
        Length = 1241

 Score = 154 (59.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 27/61 (44%), Positives = 40/61 (65%)

Query:    17 QREVLKGCKLVFSHAFP-SKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKV 75
             QR++L GC++VFS   P  +   H+H LW+  EQ GA C+ ++D  VTHVV+N    +KV
Sbjct:  1147 QRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKV 1206

Query:    76 S 76
             +
Sbjct:  1207 N 1207


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.413    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      113       113   0.00091  102 3  11 22  0.44    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  575 (61 KB)
  Total size of DFA:  133 KB (2083 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.03u 0.11s 12.14t   Elapsed:  00:00:01
  Total cpu time:  12.03u 0.11s 12.14t   Elapsed:  00:00:01
  Start:  Thu May  9 23:08:40 2013   End:  Thu May  9 23:08:41 2013

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