BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 033679
(113 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4
OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1
Length = 440
Score = 74.7 bits (182), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 42/58 (72%)
Query: 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEK 74
++E+LKGCK+VFS FP+K H LWK+ E+LGATC+ E+D SVTHVV+ EK
Sbjct: 338 RKEILKGCKIVFSRVFPTKAKPEDHPLWKMAEELGATCATEVDASVTHVVAMDVGTEK 395
>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis
thaliana GN=CPL3 PE=1 SV=2
Length = 1241
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 17 QREVLKGCKLVFSHAFP-SKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKV 75
QR++L GC++VFS P + H+H LW+ EQ GA C+ ++D VTHVV+N +KV
Sbjct: 1147 QRKILAGCRIVFSRIIPVGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKV 1206
Query: 76 S 76
+
Sbjct: 1207 N 1207
>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=fcp1 PE=1 SV=1
Length = 723
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVS 76
+++VLKGC+L+FS P + K GA ++ TH+++ K EKV
Sbjct: 487 KQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVK 546
Query: 77 LGSKGGQV 84
G +
Sbjct: 547 KAVSMGNI 554
>sp|Q8NSH9|PRPD1_CORGL 2-methylcitrate dehydratase 1 OS=Corynebacterium glutamicum
(strain ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 /
NCIMB 10025) GN=prpD1 PE=3 SV=1
Length = 498
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 22/82 (26%)
Query: 27 VFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNK-CSNEKVSLGS------ 79
V++H FP H WK E AT +E+ P V+ ++ N+ N VS S
Sbjct: 6 VYTHLSADNFPKAEHLAWKFSEL--ATDPVEVTPDVSEMIINRIIDNAAVSAASVLRRPV 63
Query: 80 -------------KGGQVFGGS 88
KGG+VFG S
Sbjct: 64 TVARQQAQSHPREKGGKVFGIS 85
>sp|Q1BAH2|PYRH_MYCSS Uridylate kinase OS=Mycobacterium sp. (strain MCS) GN=pyrH PE=3
SV=1
Length = 252
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 37 PAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQL 96
P + L K+ ++ ++ LDP V H+V+ + + E V G + V GG RG+QL
Sbjct: 19 PLYSRVLLKLGGEMFGGGAVGLDPDVVHLVARQIA-EVVRSGVQVAVVIGGGNFFRGAQL 77
>sp|A1UEJ0|PYRH_MYCSK Uridylate kinase OS=Mycobacterium sp. (strain KMS) GN=pyrH PE=3
SV=2
Length = 252
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 37 PAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQL 96
P + L K+ ++ ++ LDP V H+V+ + + E V G + V GG RG+QL
Sbjct: 19 PLYSRVLLKLGGEMFGGGAVGLDPDVVHLVARQIA-EVVRSGVQVAVVIGGGNFFRGAQL 77
>sp|A3PXZ4|PYRH_MYCSJ Uridylate kinase OS=Mycobacterium sp. (strain JLS) GN=pyrH PE=3
SV=1
Length = 252
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 37 PAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQL 96
P + L K+ ++ ++ LDP V H+V+ + + E V G + V GG RG+QL
Sbjct: 19 PLYSRVLLKLGGEMFGGGAVGLDPDVVHLVARQIA-EVVRSGVQVAVVIGGGNFFRGAQL 77
>sp|Q7VR80|GPMA_BLOFL 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
OS=Blochmannia floridanus GN=gpmA PE=3 SV=1
Length = 232
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGAT 53
++LK K +F + + S IH LW +++QL T
Sbjct: 43 QLLKKYKFIFDYGYTSVLKRTIHTLWVILDQLNQT 77
>sp|Q12XH7|RSMA_METBU Probable ribosomal RNA small subunit methyltransferase A
OS=Methanococcoides burtonii (strain DSM 6242) GN=rsmA
PE=3 SV=1
Length = 270
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 45 KVVEQLGATCSIELDPSVTHVVSNKCS-NEKVSL 77
+++E+ G IELDP++ HV+ ++ S NEK+ +
Sbjct: 55 RLLEKAGKVYVIELDPALVHVLKDRFSDNEKLEI 88
>sp|Q14746|COG2_HUMAN Conserved oligomeric Golgi complex subunit 2 OS=Homo sapiens
GN=COG2 PE=1 SV=1
Length = 738
Score = 29.3 bits (64), Expect = 6.8, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 36 FPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNE---KVSLGSKGGQVFGGSTVDR 92
P +H LW++ Q+ A S+ ++ +SN+ E + GSK + G+T D+
Sbjct: 436 LPLLVHRLWRLTLQILARYSVFVNELSLRPISNESPKEIKKPLVTGSKEPSITQGNTEDQ 495
Query: 93 GS 94
GS
Sbjct: 496 GS 497
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,358,143
Number of Sequences: 539616
Number of extensions: 1504874
Number of successful extensions: 3159
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3155
Number of HSP's gapped (non-prelim): 10
length of query: 113
length of database: 191,569,459
effective HSP length: 81
effective length of query: 32
effective length of database: 147,860,563
effective search space: 4731538016
effective search space used: 4731538016
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)