Query 033679
Match_columns 113
No_of_seqs 105 out of 361
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 05:03:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033679.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/033679hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12738 PTCB-BRCT: twin BRCT 99.8 4.2E-19 9E-24 109.2 5.9 63 24-90 1-63 (63)
2 PF00533 BRCT: BRCA1 C Terminu 99.7 2.7E-17 5.9E-22 102.8 7.6 75 17-95 2-78 (78)
3 KOG0323 TFIIF-interacting CTD 99.7 2.2E-17 4.8E-22 139.7 2.8 104 9-112 430-534 (635)
4 smart00292 BRCT breast cancer 99.6 7.7E-16 1.7E-20 94.6 7.5 77 19-98 1-80 (80)
5 cd00027 BRCT Breast Cancer Sup 99.6 1.2E-15 2.6E-20 91.8 7.3 70 23-95 1-71 (72)
6 KOG3226 DNA repair protein [Re 99.6 3.8E-16 8.1E-21 125.5 4.2 91 18-112 315-405 (508)
7 PLN03123 poly [ADP-ribose] pol 99.2 1.7E-11 3.7E-16 108.5 6.8 90 16-109 389-481 (981)
8 PLN03122 Poly [ADP-ribose] pol 99.2 3.5E-11 7.5E-16 104.9 7.2 88 17-109 186-278 (815)
9 KOG1929 Nucleotide excision re 98.7 9.6E-09 2.1E-13 89.6 4.6 90 18-111 491-580 (811)
10 KOG1929 Nucleotide excision re 98.7 2E-08 4.3E-13 87.7 5.8 94 13-110 96-190 (811)
11 PRK14350 ligA NAD-dependent DN 98.5 3.3E-07 7.2E-12 79.0 7.6 72 19-93 592-663 (669)
12 PRK06063 DNA polymerase III su 98.5 3.8E-07 8.3E-12 72.1 6.7 65 21-89 233-299 (313)
13 PRK06195 DNA polymerase III su 98.4 8.8E-07 1.9E-11 69.7 6.6 67 19-88 219-299 (309)
14 COG5275 BRCT domain type II [G 98.3 1.2E-06 2.6E-11 66.8 5.7 73 13-88 149-222 (276)
15 TIGR00575 dnlj DNA ligase, NAD 98.3 2.2E-06 4.8E-11 73.7 7.5 67 19-88 583-649 (652)
16 PRK14351 ligA NAD-dependent DN 98.3 3E-06 6.5E-11 73.4 7.7 73 19-94 608-681 (689)
17 PRK07956 ligA NAD-dependent DN 98.2 5.4E-06 1.2E-10 71.5 8.0 72 20-94 590-661 (665)
18 KOG3524 Predicted guanine nucl 98.2 6.7E-07 1.4E-11 77.0 1.8 83 18-109 116-198 (850)
19 COG0272 Lig NAD-dependent DNA 98.1 1.4E-05 3.1E-10 68.7 7.7 72 19-93 593-664 (667)
20 KOG0966 ATP-dependent DNA liga 98.0 2.7E-05 5.8E-10 68.1 7.3 82 18-102 631-715 (881)
21 KOG3548 DNA damage checkpoint 97.9 9.6E-06 2.1E-10 71.8 4.3 89 18-111 923-1038(1176)
22 KOG4362 Transcriptional regula 97.8 4.2E-05 9E-10 66.1 5.1 80 24-110 479-564 (684)
23 KOG2043 Signaling protein SWIF 97.7 6.6E-05 1.4E-09 66.8 5.5 79 24-109 660-739 (896)
24 KOG2481 Protein required for n 97.4 0.00013 2.9E-09 61.3 3.1 82 18-110 325-417 (570)
25 COG5163 NOP7 Protein required 97.2 0.0003 6.5E-09 58.1 3.7 83 18-110 348-441 (591)
26 KOG3524 Predicted guanine nucl 96.8 0.00082 1.8E-08 58.5 2.3 96 11-111 201-296 (850)
27 PRK05601 DNA polymerase III su 92.6 0.23 4.9E-06 40.8 4.7 74 20-97 294-369 (377)
28 KOG0966 ATP-dependent DNA liga 91.0 0.32 6.9E-06 43.4 4.1 66 42-107 804-881 (881)
29 COG5190 FCP1 TFIIF-interacting 85.6 0.52 1.1E-05 38.8 1.9 77 9-108 284-360 (390)
30 COG1105 FruK Fructose-1-phosph 81.3 8.6 0.00019 30.8 7.1 52 9-60 116-168 (310)
31 KOG3548 DNA damage checkpoint 78.8 3.1 6.8E-05 38.1 4.2 91 11-101 1050-1158(1176)
32 PRK05476 S-adenosyl-L-homocyst 76.4 7.2 0.00016 32.4 5.5 60 17-88 42-103 (425)
33 cd00401 AdoHcyase S-adenosyl-L 72.7 8.1 0.00018 32.0 4.9 59 17-87 30-90 (413)
34 TIGR00936 ahcY adenosylhomocys 70.9 9.5 0.00021 31.6 4.9 57 18-87 27-86 (406)
35 PF05221 AdoHcyase: S-adenosyl 69.0 6.2 0.00013 31.1 3.3 59 17-87 37-97 (268)
36 PRK02261 methylaspartate mutas 47.0 68 0.0015 22.3 5.2 44 7-51 69-112 (137)
37 PF09673 TrbC_Ftype: Type-F co 45.7 33 0.00071 23.1 3.4 55 3-60 7-61 (113)
38 COG5067 DBF4 Protein kinase es 44.2 17 0.00037 30.4 2.0 31 40-70 138-168 (468)
39 PRK00724 formate dehydrogenase 42.9 75 0.0016 24.5 5.4 61 9-87 188-248 (263)
40 cd04258 AAK_AKiii-LysC-EC AAK_ 41.8 1.5E+02 0.0032 23.4 6.9 89 10-99 165-274 (292)
41 COG0480 FusA Translation elong 39.9 35 0.00075 30.3 3.4 47 9-59 90-136 (697)
42 cd00807 GlnRS_core catalytic c 39.5 31 0.00067 26.6 2.7 29 52-80 112-143 (238)
43 PLN02494 adenosylhomocysteinas 37.8 1.1E+02 0.0023 26.1 5.9 58 18-87 41-100 (477)
44 TIGR01501 MthylAspMutase methy 37.4 92 0.002 21.8 4.7 49 7-60 67-117 (134)
45 COG0334 GdhA Glutamate dehydro 36.2 1.3E+02 0.0028 25.2 6.0 66 21-93 205-280 (411)
46 PTZ00075 Adenosylhomocysteinas 34.0 2.5E+02 0.0054 23.9 7.5 38 17-58 39-76 (476)
47 PF08777 RRM_3: RNA binding mo 33.5 1.2E+02 0.0025 20.1 4.5 48 23-73 1-50 (105)
48 cd09287 GluRS_non_core catalyt 33.2 52 0.0011 25.4 3.1 29 52-80 114-145 (240)
49 TIGR00715 precor6x_red precorr 32.9 52 0.0011 25.4 3.1 26 61-86 197-227 (256)
50 cd00418 GlxRS_core catalytic c 32.6 40 0.00086 25.8 2.3 29 52-80 100-131 (230)
51 PRK08057 cobalt-precorrin-6x r 32.4 60 0.0013 24.9 3.3 26 61-86 190-219 (248)
52 PF00189 Ribosomal_S3_C: Ribos 32.1 46 0.001 21.1 2.3 27 8-34 15-42 (85)
53 KOG4777 Aspartate-semialdehyde 30.2 58 0.0012 26.2 2.9 44 11-58 65-108 (361)
54 KOG2524 Cobyrinic acid a,c-dia 30.0 30 0.00065 27.6 1.3 22 74-95 101-122 (338)
55 TIGR03190 benz_CoA_bzdN benzoy 30.0 1.6E+02 0.0034 23.8 5.5 46 8-58 211-259 (377)
56 COG0773 MurC UDP-N-acetylmuram 29.7 1.2E+02 0.0026 25.8 4.9 59 37-97 38-106 (459)
57 TIGR02260 benz_CoA_red_B benzo 28.5 1.1E+02 0.0024 25.2 4.4 48 8-58 238-299 (413)
58 PF02571 CbiJ: Precorrin-6x re 27.4 76 0.0016 24.4 3.1 27 61-87 194-224 (249)
59 PLN03233 putative glutamate-tR 26.6 73 0.0016 27.4 3.2 31 52-82 194-228 (523)
60 COG0528 PyrH Uridylate kinase 26.1 1.8E+02 0.004 22.5 5.0 81 15-97 117-208 (238)
61 COG0008 GlnS Glutamyl- and glu 26.0 54 0.0012 27.8 2.2 29 52-80 197-228 (472)
62 KOG2093 Translesion DNA polyme 26.0 93 0.002 28.8 3.8 86 20-112 47-134 (1016)
63 KOG0465 Mitochondrial elongati 25.3 90 0.002 27.8 3.5 39 19-59 126-164 (721)
64 COG2450 Uncharacterized conser 25.2 1.4E+02 0.003 21.0 3.8 55 13-71 54-113 (124)
65 KOG1299 Vacuolar sorting prote 25.1 83 0.0018 27.1 3.1 36 8-49 78-113 (549)
66 PF08585 DUF1767: Domain of un 25.1 34 0.00073 21.7 0.7 16 81-97 7-22 (90)
67 PRK07168 bifunctional uroporph 24.8 84 0.0018 26.5 3.2 40 12-56 240-279 (474)
68 TIGR02263 benz_CoA_red_C benzo 24.4 2.6E+02 0.0056 22.6 5.9 46 9-57 216-264 (380)
69 PTZ00402 glutamyl-tRNA synthet 24.1 72 0.0016 28.0 2.7 31 52-82 236-270 (601)
70 cd02071 MM_CoA_mut_B12_BD meth 23.3 2.2E+02 0.0049 18.8 4.6 25 9-33 67-91 (122)
71 KOG3957 Predicted L-carnitine 23.3 99 0.0021 25.5 3.2 32 19-56 3-35 (387)
72 KOG3908 Queuine-tRNA ribosyltr 22.9 67 0.0015 26.2 2.1 61 37-108 132-193 (396)
73 COG3113 Predicted NTP binding 22.6 1.4E+02 0.003 20.1 3.3 38 3-51 54-91 (99)
74 cd04245 AAK_AKiii-YclM-BS AAK_ 22.2 3.9E+02 0.0084 20.9 6.7 78 20-98 171-269 (288)
75 TIGR03642 cas_csx13 CRISPR-ass 21.5 1.6E+02 0.0036 20.4 3.7 48 8-66 76-124 (124)
76 COG3096 MukB Uncharacterized p 21.1 1.6E+02 0.0034 27.4 4.2 67 39-111 670-740 (1480)
77 PRK05347 glutaminyl-tRNA synth 20.9 1.1E+02 0.0023 26.7 3.1 30 52-81 217-249 (554)
78 PF10686 DUF2493: Protein of u 20.9 2.2E+02 0.0047 17.5 5.0 60 22-90 2-67 (71)
79 TIGR00440 glnS glutaminyl-tRNA 20.9 70 0.0015 27.5 2.0 32 52-83 188-223 (522)
80 TIGR03838 queuosine_YadB gluta 20.5 55 0.0012 25.6 1.2 28 52-79 176-206 (272)
No 1
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=99.78 E-value=4.2e-19 Score=109.22 Aligned_cols=63 Identities=21% Similarity=0.203 Sum_probs=54.1
Q ss_pred cEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcch
Q 033679 24 CKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTV 90 (113)
Q Consensus 24 c~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~W 90 (113)
|+|+|||+.|. ++..++++++++||++..+++.++||||+.+..++||+.|.++||+||+|+|
T Consensus 1 ~~i~~sg~~~~----~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGK----ERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TT----TCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHH----HHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 68999998764 4669999999999999999999999999999999999999999999999999
No 2
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=99.72 E-value=2.7e-17 Score=102.79 Aligned_cols=75 Identities=16% Similarity=0.215 Sum_probs=68.1
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC--CcHHHHHHHhCCCeecCcchHHHH
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC--SNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~--~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
+.++|+||.+++++. + ..++..+.++++.+||++...+++.+||+|+.++ .+.|+..|...+++||+|+||.+|
T Consensus 2 ~~~~F~g~~f~i~~~-~---~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~c 77 (78)
T PF00533_consen 2 KPKIFEGCTFCISGF-D---SDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDC 77 (78)
T ss_dssp STTTTTTEEEEESST-S---SSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHH
T ss_pred CCCCCCCEEEEEccC-C---CCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHh
Confidence 568999999999554 2 3577899999999999999999999999999987 899999999999999999999999
Q ss_pred H
Q 033679 95 Q 95 (113)
Q Consensus 95 ~ 95 (113)
.
T Consensus 78 i 78 (78)
T PF00533_consen 78 I 78 (78)
T ss_dssp H
T ss_pred C
Confidence 5
No 3
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.67 E-value=2.2e-17 Score=139.70 Aligned_cols=104 Identities=19% Similarity=0.217 Sum_probs=97.9
Q ss_pred HHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCC-CeecC
Q 033679 9 IFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGG-QVFGG 87 (113)
Q Consensus 9 ~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~g-i~IV~ 87 (113)
++.++|++|.++|+||.++|||.+|.+.+.++..+-..+.++||....+++..+||+|+.+++|.|+.+|...+ ++||+
T Consensus 430 vr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i~~~~gt~k~~~a~~~~~~~Vv~ 509 (635)
T KOG0323|consen 430 VRLLIPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLIAANAGTKKVYKAVVSGSAKVVN 509 (635)
T ss_pred hhhhhhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHHhhccCcceeeccccccceeEec
Confidence 68899999999999999999999999888788888888999999999999999999999999999999999986 99999
Q ss_pred cchHHHHHHhhCCCCCCceeccCCC
Q 033679 88 STVDRGSQLFVARATRREVSCEANQ 112 (113)
Q Consensus 88 p~WL~~c~~~w~r~dE~~y~~~~~~ 112 (113)
++||+.|..+|.+++|..|.+...|
T Consensus 510 ~~wl~~~~e~w~~v~ek~~~l~~~~ 534 (635)
T KOG0323|consen 510 AAWLWRSLEKWGKVEEKLEPLDDDQ 534 (635)
T ss_pred hhHHHHHHHHhcchhcccccccccc
Confidence 9999999999999999999986554
No 4
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=99.65 E-value=7.7e-16 Score=94.55 Aligned_cols=77 Identities=19% Similarity=0.154 Sum_probs=66.0
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCC-CccEEEecCCCcHH--HHHHHhCCCeecCcchHHHHH
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDP-SVTHVVSNKCSNEK--VSLGSKGGQVFGGSTVDRGSQ 95 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~-~vTHlV~~~~~t~K--~~~A~k~gi~IV~p~WL~~c~ 95 (113)
.+|+|++++|+|.+ ...++..+++++..+||++...+++ ++||+|+.+....+ +..|.+.+++||+|+|+.+|.
T Consensus 1 ~~f~g~~~~~~g~~---~~~~~~~l~~~i~~~Gg~~~~~~~~~~~thvi~~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 77 (80)
T smart00292 1 KLFKGKVFVITGKF---DKNERDELKELIEALGGKVTSSLSSKTTTHVIVGSPEGGKLELLLAIALGIPIVTEDWLLDCL 77 (80)
T ss_pred CccCCeEEEEeCCC---CCccHHHHHHHHHHcCCEEecccCccceeEEEEcCCCCccHHHHHHHHcCCCCccHHHHHHHH
Confidence 47999999999932 3456789999999999999999999 99999999886555 467777899999999999998
Q ss_pred Hhh
Q 033679 96 LFV 98 (113)
Q Consensus 96 ~~w 98 (113)
..+
T Consensus 78 ~~~ 80 (80)
T smart00292 78 KAG 80 (80)
T ss_pred HCc
Confidence 754
No 5
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=99.63 E-value=1.2e-15 Score=91.76 Aligned_cols=70 Identities=19% Similarity=0.201 Sum_probs=63.3
Q ss_pred CcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHH-HHHHHhCCCeecCcchHHHHH
Q 033679 23 GCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEK-VSLGSKGGQVFGGSTVDRGSQ 95 (113)
Q Consensus 23 Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K-~~~A~k~gi~IV~p~WL~~c~ 95 (113)
||.++|+|..+ ..++..+.++++.+||++..++++.+||+|+.+....+ +..|...+++||+++||.+|.
T Consensus 1 ~~~~~i~g~~~---~~~~~~l~~~i~~~Gg~v~~~~~~~~thvI~~~~~~~~~~~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 1 GLTFVITGDLP---SEERDELKELIEKLGGKVTSSVSKKTTHVIVGSDAGPKKLLKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred CCEEEEEecCC---CcCHHHHHHHHHHcCCEEeccccCCceEEEECCCCCchHHHHHHHcCCeEecHHHHHHHh
Confidence 78999999875 45778999999999999999999999999999887666 888888899999999999996
No 6
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=99.61 E-value=3.8e-16 Score=125.55 Aligned_cols=91 Identities=15% Similarity=0.064 Sum_probs=86.4
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHHHh
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
.++|+|+++|+||+ ++|+++.|...|-.|||++..+.+..+|||||+-++|.||++....|-.||+.+|+.+|..+
T Consensus 315 ~klL~GVV~VlSGf----qNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~ 390 (508)
T KOG3226|consen 315 SKLLEGVVFVLSGF----QNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQ 390 (508)
T ss_pred HHhhhceEEEEecc----cCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHH
Confidence 57899999999998 56899999999999999999999999999999999999999999998899999999999999
Q ss_pred hCCCCCCceeccCCC
Q 033679 98 VARATRREVSCEANQ 112 (113)
Q Consensus 98 w~r~dE~~y~~~~~~ 112 (113)
.+++|=+.|++..|-
T Consensus 391 kk~lp~rrYlm~~~~ 405 (508)
T KOG3226|consen 391 KKLLPIRRYLMHAGK 405 (508)
T ss_pred HhhccHHHHHhcCCC
Confidence 999999999997663
No 7
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=99.23 E-value=1.7e-11 Score=108.52 Aligned_cols=90 Identities=9% Similarity=-0.022 Sum_probs=79.7
Q ss_pred hhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC---CcHHHHHHHhCCCeecCcchHH
Q 033679 16 GQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC---SNEKVSLGSKGGQVFGGSTVDR 92 (113)
Q Consensus 16 ~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~---~t~K~~~A~k~gi~IV~p~WL~ 92 (113)
...++|.|++|+++|.++. .+..+.+.++.+||+++..+++.+||||+.+. ...|+++|.+.||+||+.+||.
T Consensus 389 ~~~~~l~~~~i~i~G~~~~----~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ 464 (981)
T PLN03123 389 SESEFLGDLKVSIVGASKE----KVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLV 464 (981)
T ss_pred ccCCCcCCeEEEEecCCCC----cHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHH
Confidence 3468899999999999863 23577889999999999999999999999853 5788999999999999999999
Q ss_pred HHHHhhCCCCCCceecc
Q 033679 93 GSQLFVARATRREVSCE 109 (113)
Q Consensus 93 ~c~~~w~r~dE~~y~~~ 109 (113)
+|.....+.++..|.+.
T Consensus 465 ds~~~~~~~p~~~y~~~ 481 (981)
T PLN03123 465 DCFKKKKKLPFDKYKLE 481 (981)
T ss_pred HHHhccccCcchhhhhc
Confidence 99999999999999764
No 8
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=99.20 E-value=3.5e-11 Score=104.90 Aligned_cols=88 Identities=14% Similarity=0.080 Sum_probs=78.5
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-----CcHHHHHHHhCCCeecCcchH
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-----SNEKVSLGSKGGQVFGGSTVD 91 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-----~t~K~~~A~k~gi~IV~p~WL 91 (113)
..++|.|++|+|||.++. .+..+..+++.+||++.+.+ .+.||+|++.. ++.|++.|.+.||+||+.+||
T Consensus 186 ~~kpL~G~~fviTGtl~~----sr~elK~~Ie~~GGkvsssV-s~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L 260 (815)
T PLN03122 186 PGKPFSGMMISLSGRLSR----THQYWKKDIEKHGGKVANSV-EGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWL 260 (815)
T ss_pred cCCCcCCcEEEEeCCCCC----CHHHHHHHHHHcCCEEcccc-ccceEEEEcCccccccCccHHHHHHHcCCcCccHHHH
Confidence 456899999999999853 56799999999999999999 77889998873 358999999999999999999
Q ss_pred HHHHHhhCCCCCCceecc
Q 033679 92 RGSQLFVARATRREVSCE 109 (113)
Q Consensus 92 ~~c~~~w~r~dE~~y~~~ 109 (113)
.+|....+.++|..|.+.
T Consensus 261 ~d~i~~~k~~~~~~y~l~ 278 (815)
T PLN03122 261 IDSIEKQEAQPLEAYDVV 278 (815)
T ss_pred HHHHhcCCcccchhhhhc
Confidence 999999999999999884
No 9
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.74 E-value=9.6e-09 Score=89.63 Aligned_cols=90 Identities=10% Similarity=0.004 Sum_probs=82.1
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHHHh
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
.++|.||.|++|+. .-+++..+-..+..+||.....|....|||++.+.+..|+..|.++++++|+|+||..|..+
T Consensus 491 ~~~~e~~~~~~s~~----~~~~~e~ln~~~~~~gas~~~~f~r~~~~l~~~~~k~s~~~~~~kw~ip~vT~~wL~e~~rq 566 (811)
T KOG1929|consen 491 SQPFENLTISNSQS----AEAEREKLNNLANDLGASNVKTFTRKSTTLLTTSAKGSKYEIAGKWSIPIVTPDWLYECVRQ 566 (811)
T ss_pred cccccCceEEeeec----hHHHHHHHhHhhhhccccccceeeecccEEeccccccchhhhccccCCCccChhHHHhhccc
Confidence 67899999999986 23567788889999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCceeccCC
Q 033679 98 VARATRREVSCEAN 111 (113)
Q Consensus 98 w~r~dE~~y~~~~~ 111 (113)
.+..+++.|..+..
T Consensus 567 ~~~~~~e~~l~~~s 580 (811)
T KOG1929|consen 567 NKGERNEGFLNGNS 580 (811)
T ss_pred cCcccceeeccccc
Confidence 99999999988654
No 10
>KOG1929 consensus Nucleotide excision repair factor NEF2, RAD4/CUT5 component [Replication, recombination and repair]
Probab=98.72 E-value=2e-08 Score=87.72 Aligned_cols=94 Identities=13% Similarity=-0.056 Sum_probs=85.0
Q ss_pred HHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcHHHHHHHhCCCeecCcchH
Q 033679 13 TENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGSTVD 91 (113)
Q Consensus 13 l~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p~WL 91 (113)
....+...+.||.||.+|+- .++++.+..++..+|++....++..|+|++.... .|+||++|+++++++|+.+|+
T Consensus 96 ~~~~~~p~~~~~~Vc~tgl~----~~eK~ei~~~v~k~gg~~~~~L~s~v~~~~~~~~~~~~kYe~al~wn~~v~~~~w~ 171 (811)
T KOG1929|consen 96 RDTMKCPGFFGLKVCLTGLS----GDEKSEIKILVPKHGGTLHRSLSSDVNSLKILPEVKTEKYEQALKWNIPVVSDDWL 171 (811)
T ss_pred hhhhcCCcccceEEEecccc----hHHHHHHHHHhhhcccEEehhhhhhhheeeeccccchHHHHHHHhhCCccccHHHH
Confidence 34566788999999999983 4688999999999999999999999999988876 569999999999999999999
Q ss_pred HHHHHhhCCCCCCceeccC
Q 033679 92 RGSQLFVARATRREVSCEA 110 (113)
Q Consensus 92 ~~c~~~w~r~dE~~y~~~~ 110 (113)
++|..+-...++..|.+..
T Consensus 172 ~~s~~~~~~~~~~~~e~~~ 190 (811)
T KOG1929|consen 172 FDSIEKTAVLETKPYEGAP 190 (811)
T ss_pred hhhhccccccccccccccc
Confidence 9999999999999999875
No 11
>PRK14350 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.51 E-value=3.3e-07 Score=78.97 Aligned_cols=72 Identities=13% Similarity=0.069 Sum_probs=64.6
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHH
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRG 93 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~ 93 (113)
.+|.|.++||+|.++. ..+..+.++++++||++++.++.+++.||+.+..+.|.+.|.+.||+|++.+-+.+
T Consensus 592 ~~l~gktfV~TG~l~~---~~R~e~~~lie~~Ggkv~ssVSkktd~LV~G~~aGsKl~KA~~LGI~Ii~e~~f~~ 663 (669)
T PRK14350 592 SFLFGKKFCITGSFNG---YSRSVLIDKLTKKGAIFNTCVTKYLDFLLVGEKAGLKLKKANNLGIKIMSLFDIKS 663 (669)
T ss_pred CccCCcEEEEecccCC---CCHHHHHHHHHHcCCEEeccccCCCcEEEECCCCCchHHHHHHcCCEEecHHHHHH
Confidence 4699999999999864 46789999999999999999999999999998777899999999999999776654
No 12
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=98.48 E-value=3.8e-07 Score=72.08 Aligned_cols=65 Identities=17% Similarity=0.124 Sum_probs=58.7
Q ss_pred CCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCc--HHHHHHHhCCCeecCcc
Q 033679 21 LKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSN--EKVSLGSKGGQVFGGST 89 (113)
Q Consensus 21 L~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t--~K~~~A~k~gi~IV~p~ 89 (113)
|.|-+|||||.+. .++.+++++++.+||.+.+.++++++.||+.+..+ .|.+.|.+.||+|++-+
T Consensus 233 ~~g~~~v~TG~l~----~~R~e~~~~~~~~G~~v~~sVs~~t~~lv~g~~~~~ssK~~kA~~~gi~ii~e~ 299 (313)
T PRK06063 233 VQGMRVALSAEVS----RTHEELVERILHAGLAYSDSVDRDTSLVVCNDPAPEQGKGYHARQLGVPVLDEA 299 (313)
T ss_pred cCCCEEEEecCCC----CCHHHHHHHHHHcCCEecCccccCccEEEECCCCCcccHHHHHHHcCCccccHH
Confidence 7899999999985 36789999999999999999999999999997644 89999999999999854
No 13
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=98.39 E-value=8.8e-07 Score=69.66 Aligned_cols=67 Identities=19% Similarity=0.172 Sum_probs=57.9
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC---------CcHHHHHHHhC-----CCe
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC---------SNEKVSLGSKG-----GQV 84 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~---------~t~K~~~A~k~-----gi~ 84 (113)
.+|.|-++||||.+.. .++..+..+++.+||.+.+.++.+++.||+.+. .+.|.+.|.+. ||+
T Consensus 219 ~~l~g~~~vfTG~l~~---~~R~~~~~~~~~~Gg~v~~sVs~~t~~lV~G~~~~~~~~~~~~~~K~~kA~~l~~~g~~i~ 295 (309)
T PRK06195 219 TAFKEEVVVFTGGLAS---MTRDEAMILVRRLGGTVGSSVTKKTTYLVTNTKDIEDLNREEMSNKLKKAIDLKKKGQNIK 295 (309)
T ss_pred ccccCCEEEEccccCC---CCHHHHHHHHHHhCCEecCCcccCceEEEECCCcchhhcccCcChHHHHHHHHHhCCCCcE
Confidence 3699999999999843 367899999999999999999999999999853 36899999765 799
Q ss_pred ecCc
Q 033679 85 FGGS 88 (113)
Q Consensus 85 IV~p 88 (113)
|++-
T Consensus 296 ii~E 299 (309)
T PRK06195 296 FLNE 299 (309)
T ss_pred EecH
Confidence 9974
No 14
>COG5275 BRCT domain type II [General function prediction only]
Probab=98.32 E-value=1.2e-06 Score=66.79 Aligned_cols=73 Identities=18% Similarity=0.133 Sum_probs=64.3
Q ss_pred HHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcHHHHHHHhCCCeecCc
Q 033679 13 TENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGS 88 (113)
Q Consensus 13 l~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p 88 (113)
.|+.+++.|.|.+|+|+|+++. -++.+...++..+||+|....+.++|-||+.+. |..|++.+++.+|+.++-
T Consensus 149 ~peg~~~cL~G~~fVfTG~l~T---lsR~~a~~lvk~yGgrvT~~pSskTtflvlGdnaGP~K~ekiKqlkIkaidE 222 (276)
T COG5275 149 VPEGERECLKGKVFVFTGDLKT---LSRDDAKTLVKVYGGRVTAVPSSKTTFLVLGDNAGPSKMEKIKQLKIKAIDE 222 (276)
T ss_pred CCCCCcccccccEEEEeccccc---ccchhHHHHHHHhCCeeecccccceeEEEecCCCChHHHHHHHHhCCccccH
Confidence 5889999999999999999984 345577888999999999999999999999864 889999999999998773
No 15
>TIGR00575 dnlj DNA ligase, NAD-dependent. The member of this family from Treponema pallidum differs in having three rather than just one copy of the BRCT (BRCA1 C Terminus) domain (pfam00533) at the C-terminus. It is included in the seed.
Probab=98.30 E-value=2.2e-06 Score=73.72 Aligned_cols=67 Identities=13% Similarity=0.178 Sum_probs=60.3
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCc
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGS 88 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p 88 (113)
.+|.|-++||+|.++. .++..+..+++.+||++.+.++.+++.||+.+..+.|.+.|.+.||+|++-
T Consensus 583 ~~l~gk~~v~TG~l~~---~~R~~~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsKl~kA~~lgi~ii~E 649 (652)
T TIGR00575 583 SPLAGKTFVLTGTLSQ---MSRDEAKELLENLGGKVASSVSKKTDYVIAGEKAGSKLAKAQELGIPIINE 649 (652)
T ss_pred CCccCcEEEEeccCCC---CCHHHHHHHHHHcCCEEeCCcCCCccEEEECCCCChHHHHHHHcCCcEech
Confidence 4699999999999864 367799999999999999999999999999987667999999999999874
No 16
>PRK14351 ligA NAD-dependent DNA ligase LigA; Provisional
Probab=98.27 E-value=3e-06 Score=73.35 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=63.6
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcHHHHHHHhCCCeecCcchHHHH
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
.+|+|-++||+|.+.. .++..+..+++.+||++.+.++.+++.||+.+. |..|.+.|.+.||+|++-+-+.+=
T Consensus 608 ~~l~g~~~v~TG~l~~---~~R~~~~~~i~~~Gg~v~~sVs~kt~~Lv~G~~~g~sKl~kA~~lgi~ii~E~~f~~l 681 (689)
T PRK14351 608 DALDGLTFVFTGSLSG---YTRSEAQELVEAHGGNATGSVSGNTDYLVVGENPGQSKRDDAEANDVPTLDEEEFEEL 681 (689)
T ss_pred CCCCCcEEEEccCCCC---CCHHHHHHHHHHcCCEEcCCcCCCccEEEEcCCCChhHHHHHHHCCCeEecHHHHHHH
Confidence 4699999999999854 367899999999999999999999999999875 448999999999999997766553
No 17
>PRK07956 ligA NAD-dependent DNA ligase LigA; Validated
Probab=98.21 E-value=5.4e-06 Score=71.51 Aligned_cols=72 Identities=17% Similarity=0.091 Sum_probs=63.5
Q ss_pred CCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHH
Q 033679 20 VLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 20 vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
.|.|-++||+|.++. ..+..+..+++.+||.+++.++.+++-||+.+..+.|.+.|.+.||+|++-+-+.+-
T Consensus 590 ~~~g~~~v~TG~l~~---~~R~e~~~~i~~~G~~v~~sVs~kt~~lv~G~~~gsK~~kA~~lgI~ii~E~~f~~~ 661 (665)
T PRK07956 590 DLAGKTVVLTGTLEQ---LSRDEAKEKLEALGAKVSGSVSKKTDLVVAGEAAGSKLAKAQELGIEVLDEEEFLRL 661 (665)
T ss_pred CccccEEEEeCCCCC---CCHHHHHHHHHHcCCEEeCcccCCCCEEEECCCCChHHHHHHHcCCeEEcHHHHHHH
Confidence 389999999999853 357799999999999999999999999999987779999999999999987665543
No 18
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=98.18 E-value=6.7e-07 Score=77.02 Aligned_cols=83 Identities=18% Similarity=0.189 Sum_probs=71.9
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHHHh
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
...++|++.+|+|..+.. ..+..+...||+.+..+.+.++||+|+...+.+|+..|+-. .+++.|+|+.+|
T Consensus 116 ~~~m~~vvlcfTg~rkk~-----e~lv~lvh~mgg~irkd~nsktthli~n~s~gek~~~a~t~-~~~~rp~wv~~a--- 186 (850)
T KOG3524|consen 116 CELMKDVVMCFTGERKKK-----EELVDLVHYMGGSIRKDTNSKTTHLIANKVEGEKQSIALVG-VPTMRPDWVTEA--- 186 (850)
T ss_pred chhhcCceeeeeccchhh-----HHHHHHHHHhcceeEeeeccCceEEEeecccceEEEEEeec-cceechHhhhhh---
Confidence 345899999999997642 28999999999999999999999999999999999888766 999999999998
Q ss_pred hCCCCCCceecc
Q 033679 98 VARATRREVSCE 109 (113)
Q Consensus 98 w~r~dE~~y~~~ 109 (113)
|++.++..|-+.
T Consensus 187 w~~rn~~yfda~ 198 (850)
T KOG3524|consen 187 WKHRNDSYFDAM 198 (850)
T ss_pred hcCcchhhhhhh
Confidence 777777766553
No 19
>COG0272 Lig NAD-dependent DNA ligase (contains BRCT domain type II) [DNA replication, recombination, and repair]
Probab=98.07 E-value=1.4e-05 Score=68.70 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=64.5
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHH
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRG 93 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~ 93 (113)
.+|.|-++||+|.++. -++.....+++++||++...++.++.-||+.+.-+.|+..|.+.||+|.+-+++.+
T Consensus 593 ~~l~gkt~V~TGtL~~---~sR~eak~~le~lGakv~~SVSkktD~vvaG~~aGSKl~kA~eLgv~i~~E~~~~~ 664 (667)
T COG0272 593 SPLAGKTFVLTGTLEG---MSRDEAKALLEALGAKVSGSVSKKTDYVVAGENAGSKLAKAQELGVKIIDEEEFLA 664 (667)
T ss_pred cccCCCEEEEeccCCC---CCHHHHHHHHHHcCCEEeceecccccEEEEcCCCChHHHHHHHcCCeEecHHHHHH
Confidence 6799999999999863 46678899999999999999999999999998877899999999999999776653
No 20
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=97.96 E-value=2.7e-05 Score=68.08 Aligned_cols=82 Identities=11% Similarity=-0.014 Sum_probs=67.4
Q ss_pred hcCCCCcEEE-EccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEe--cCCCcHHHHHHHhCCCeecCcchHHHH
Q 033679 18 REVLKGCKLV-FSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVS--NKCSNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 18 ~~vL~Gc~I~-fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~--~~~~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
..+|+|.-++ +||.- ..+.++.+.+++-.+||.++.++.++.||.|+ ....+.+-.+|+++++-||+|+||.+|
T Consensus 631 s~if~gl~f~Vlsgt~---~~~tk~~le~~ivenGG~iv~nv~p~~~~ci~~a~~et~~vk~~~~~~~cdVl~p~Wlldc 707 (881)
T KOG0966|consen 631 SNIFDGLEFCVLSGTS---ETHTKAKLEEIIVENGGKIVQNVGPSDTLCIATAGKETTRVKAQAIKRSCDVLKPAWLLDC 707 (881)
T ss_pred hhhhcCeeEEEecCCc---ccccHHHHHHHHHHcCCEEEEcCCCCCcceEEeccccchHHHHHHHhccCceeeHHHHHHH
Confidence 4568888765 55542 33446799999999999999999999999996 566788888899999999999999999
Q ss_pred HHhhCCCC
Q 033679 95 QLFVARAT 102 (113)
Q Consensus 95 ~~~w~r~d 102 (113)
+...+-++
T Consensus 708 c~~~~l~p 715 (881)
T KOG0966|consen 708 CKKQRLLP 715 (881)
T ss_pred Hhhhhccc
Confidence 98877444
No 21
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=97.94 E-value=9.6e-06 Score=71.83 Aligned_cols=89 Identities=11% Similarity=0.031 Sum_probs=65.3
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCC-ccE-------------------------EEecC-C
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPS-VTH-------------------------VVSNK-C 70 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~-vTH-------------------------lV~~~-~ 70 (113)
+.+|.||+++|++.+-. +..+..-.+.+|+.+....=.. -+| ||+.. .
T Consensus 923 kniFd~cvF~lTsa~~s-----d~~~r~s~e~~gg~vle~gl~~~Fn~p~~g~~~~lr~Ln~~q~~ks~~qalLIsdth~ 997 (1176)
T KOG3548|consen 923 KNIFDGCVFMLTSANRS-----DSASRPSMEKHGGLVLEKGLMNLFNTPFKGGGIVLRQLNSFQERKSNYQALLISDTHY 997 (1176)
T ss_pred cchhcceeEEEeccccc-----hhhhhhhhhccCChhhhccccccccccccCCcchHHhhhHHhhhccccceeEeehhhh
Confidence 48999999999998643 2344444455777665432111 111 22221 1
Q ss_pred CcHHHHHHHhCCCeecCcchHHHHHHhhCCCCCCceeccCC
Q 033679 71 SNEKVSLGSKGGQVFGGSTVDRGSQLFVARATRREVSCEAN 111 (113)
Q Consensus 71 ~t~K~~~A~k~gi~IV~p~WL~~c~~~w~r~dE~~y~~~~~ 111 (113)
.|-||-.|++.||+.||+.||.+|.+.++.+|=.+|+++.|
T Consensus 998 Rt~KYLeaLA~giPcVh~~fI~aC~e~nr~Vdy~~YLLpsG 1038 (1176)
T KOG3548|consen 998 RTHKYLEALARGIPCVHNTFIQACGEQNRCVDYTDYLLPSG 1038 (1176)
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHhccccccchhhcccCc
Confidence 58899999999999999999999999999999999999877
No 22
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=97.75 E-value=4.2e-05 Score=66.05 Aligned_cols=80 Identities=20% Similarity=0.076 Sum_probs=66.6
Q ss_pred cEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC------CcHHHHHHHhCCCeecCcchHHHHHHh
Q 033679 24 CKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC------SNEKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 24 c~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~------~t~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
.+.+-||.-|. +...+...|.. +.....++.+||+|+.-. +|-|+..++.+|.+|++.+|+.+|+..
T Consensus 479 ~~~~~s~l~p~----ek~~v~~~a~~---t~~k~~~~~~thvi~~~~~~g~c~rTlk~~~gil~gkwi~~~~w~~~s~k~ 551 (684)
T KOG4362|consen 479 LVLLVSGLTPS----EKQLVEKFAVD---TISKFWIEPVTHVIASTDLEGACLRTLKVLMGILRGKWILSYDWVLASLKL 551 (684)
T ss_pred eeeeeccCCcc----hHHHHHHHHHH---HHhhccCCCceeeeeecccccchhhhHHHHHHhhcCceeeeHHHHHHHHHh
Confidence 45566777664 34466777766 777788999999999843 699999999999999999999999999
Q ss_pred hCCCCCCceeccC
Q 033679 98 VARATRREVSCEA 110 (113)
Q Consensus 98 w~r~dE~~y~~~~ 110 (113)
-+.++|++|++..
T Consensus 552 ~~~~~eepfEl~~ 564 (684)
T KOG4362|consen 552 RKWVSEEPFELQI 564 (684)
T ss_pred cCCCCCCCeeEee
Confidence 9999999999853
No 23
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.69 E-value=6.6e-05 Score=66.75 Aligned_cols=79 Identities=11% Similarity=0.041 Sum_probs=65.4
Q ss_pred cEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcHHHHHHHhCCCeecCcchHHHHHHhhCCCC
Q 033679 24 CKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGSTVDRGSQLFVARAT 102 (113)
Q Consensus 24 c~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p~WL~~c~~~w~r~d 102 (113)
..+.|++.... ..+-..+..+|+.+.... ...||+|+.+- .|-|.-.|+..|++||+++||.+|......+|
T Consensus 660 ~~~lfs~~~~~------~~~k~~~k~lg~s~~ss~-~e~Th~i~~rirRT~k~Leai~~G~~ivT~~wL~s~~k~g~~~d 732 (896)
T KOG2043|consen 660 IEVLFSDKNDG------KNYKLAKKFLGGSVASSD-SEATHFIADRIRRTLKFLEAISSGKPLVTPQWLVSSLKSGEKLD 732 (896)
T ss_pred eeeeeeeccCc------hhhhhHHhhccceeeccc-ccceeeeehhhhccHHHHhhhccCCcccchHHHHHHhhcccccc
Confidence 45778887422 246667888887777665 56799999975 69999999999999999999999999999999
Q ss_pred CCceecc
Q 033679 103 RREVSCE 109 (113)
Q Consensus 103 E~~y~~~ 109 (113)
|..|.+.
T Consensus 733 ek~yil~ 739 (896)
T KOG2043|consen 733 EKPYILH 739 (896)
T ss_pred Ccccccc
Confidence 9999873
No 24
>KOG2481 consensus Protein required for normal rRNA processing [RNA processing and modification]
Probab=97.38 E-value=0.00013 Score=61.27 Aligned_cols=82 Identities=15% Similarity=0.168 Sum_probs=67.4
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEee----------eCCCccEEEecCCC-cHHHHHHHhCCCeec
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIE----------LDPSVTHVVSNKCS-NEKVSLGSKGGQVFG 86 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~----------l~~~vTHlV~~~~~-t~K~~~A~k~gi~IV 86 (113)
+..|+||++.+|.-+|. ..|.-++.++||.|+-+ -|.++||=|+..|+ ..+| .|..-|
T Consensus 325 kslF~glkFfl~reVPr------esL~fiI~s~GG~V~wd~~~~g~~~~~~d~~ITH~IvDrP~~~~~v-----~gR~Yv 393 (570)
T KOG2481|consen 325 KSLFSGLKFFLNREVPR------ESLEFIIRSFGGKVSWDPLGIGATYDESDERITHQIVDRPGQQTSV-----IGRTYV 393 (570)
T ss_pred HHHhhcceeeeeccCch------HHHHHHHHHcCCceecCccCCCCcccccccceeeeeecccCcccee-----eeeeee
Confidence 56799999999998886 48899999999999877 24568999999986 1111 266789
Q ss_pred CcchHHHHHHhhCCCCCCceeccC
Q 033679 87 GSTVDRGSQLFVARATRREVSCEA 110 (113)
Q Consensus 87 ~p~WL~~c~~~w~r~dE~~y~~~~ 110 (113)
-|.|++||.....+++-+.|....
T Consensus 394 QPQWvfDsvNar~llpt~~Y~~G~ 417 (570)
T KOG2481|consen 394 QPQWVFDSVNARLLLPTEKYFPGK 417 (570)
T ss_pred cchhhhhhccchhhccHhhhCCCc
Confidence 999999999999999999998754
No 25
>COG5163 NOP7 Protein required for biogenesis of the 60S ribosomal subunit [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0003 Score=58.08 Aligned_cols=83 Identities=16% Similarity=0.127 Sum_probs=67.0
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEE-----------eeeCCCccEEEecCCCcHHHHHHHhCCCeec
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCS-----------IELDPSVTHVVSNKCSNEKVSLGSKGGQVFG 86 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~-----------~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV 86 (113)
..+|+|.++.+|.-+|.+ .|.-++.++||.|. .++|+.+||-|+.+|. ...+=.|.--+
T Consensus 348 ~slFS~f~FyisreVp~d------sLefiilscGG~V~~~p~~~~i~~~~~vD~~vth~i~drp~----~~~kvegrtYi 417 (591)
T COG5163 348 KSLFSGFKFYISREVPGD------SLEFIILSCGGSVVGSPCEADIHVSEKVDEKVTHQIVDRPV----MKNKVEGRTYI 417 (591)
T ss_pred hhhhhceEEEEeccccch------HHHHHHHHcCCcccCchhhccCCchhhccchhhhhhccchh----hhhhhcceeee
Confidence 346899999999998864 78888999999876 3457889999999873 11122377888
Q ss_pred CcchHHHHHHhhCCCCCCceeccC
Q 033679 87 GSTVDRGSQLFVARATRREVSCEA 110 (113)
Q Consensus 87 ~p~WL~~c~~~w~r~dE~~y~~~~ 110 (113)
-|.||++|.....++.-+.|.+..
T Consensus 418 QPQw~fDsiNkG~l~~~~~Y~~G~ 441 (591)
T COG5163 418 QPQWLFDSINKGKLACVENYCVGK 441 (591)
T ss_pred chHHHHhhhccccchhhhhccccc
Confidence 999999999999999999998754
No 26
>KOG3524 consensus Predicted guanine nucleotide exchange factor (PEBBLE) [Signal transduction mechanisms]
Probab=96.76 E-value=0.00082 Score=58.48 Aligned_cols=96 Identities=20% Similarity=0.115 Sum_probs=79.5
Q ss_pred HHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcch
Q 033679 11 FCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTV 90 (113)
Q Consensus 11 ~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~W 90 (113)
.....-|-.+|.||.++|=|. .+-+.+.+-...+.-|+.+.. =+..+||||..+..+.---.+......+|.-+|
T Consensus 201 ~f~d~hrl~~feg~~~~f~gF----~~ee~~~m~~sle~~gg~~a~-~d~~cthvvv~e~~~~~~p~~~s~~~~~vk~ew 275 (850)
T KOG3524|consen 201 CFVDKHRLGVFEGLSLFFHGF----KQEEIDDMLRSLENTGGKLAP-SDTLCTHVVVNEDNDEVEPLAVSSNQVHVKKEW 275 (850)
T ss_pred chhhhhccccccCCeEeecCC----cHHHHHHHHHHHHhcCCcccC-CCCCceeEeecCCccccccccccccceeecccc
Confidence 344556778899999999776 234667888999999999999 678999999998765554556666789999999
Q ss_pred HHHHHHhhCCCCCCceeccCC
Q 033679 91 DRGSQLFVARATRREVSCEAN 111 (113)
Q Consensus 91 L~~c~~~w~r~dE~~y~~~~~ 111 (113)
.+-+..+..+.-|..|+.+.+
T Consensus 276 fw~siq~g~~a~e~~yl~~~~ 296 (850)
T KOG3524|consen 276 FWVSIQRGCCAIEDNYLLPTG 296 (850)
T ss_pred eEEEEecchhccccceecccc
Confidence 999999999999999998875
No 27
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=92.57 E-value=0.23 Score=40.76 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=60.7
Q ss_pred CCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC--CcHHHHHHHhCCCeecCcchHHHHHHh
Q 033679 20 VLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC--SNEKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 20 vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~--~t~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
.-+|-.|+||+-+- .++..|...+-..|=.++..++..+.=|||+++ .+.|.+.|.+.||++++-.=+.+.+..
T Consensus 294 lv~Gm~v~~~~e~~----~~~d~li~~~~~agL~y~~~~~r~tslvv~n~~~~~~gk~~~a~~~gipl~~d~~fl~~~~~ 369 (377)
T PRK05601 294 LVAGMEVVVAPEIT----MDPDIIIQAIVRAGLAYSEKLTRQTSVVVCNQTRDLDGKAMHAQRKGIPLLSDVAFLAAVER 369 (377)
T ss_pred cccCcEEEEeCCcc----CCHHHHHHHHHHccchhhhccccceeEEEeCCCCCccchhhhhhhcCCCccCHHHHHHHHHH
Confidence 56899999999764 344688888999999999999999999999876 489999999999999986555554443
No 28
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=90.99 E-value=0.32 Score=43.38 Aligned_cols=66 Identities=11% Similarity=-0.030 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCEEEeeeC------CCccEEEecC--CCcHHHHHH--HhC--CCeecCcchHHHHHHhhCCCCCCcee
Q 033679 42 YLWKVVEQLGATCSIELD------PSVTHVVSNK--CSNEKVSLG--SKG--GQVFGGSTVDRGSQLFVARATRREVS 107 (113)
Q Consensus 42 ~l~~~a~~lGA~~~~~l~------~~vTHlV~~~--~~t~K~~~A--~k~--gi~IV~p~WL~~c~~~w~r~dE~~y~ 107 (113)
.+-..++.+|+.+...=. ...||+|+.. ....+...- .+. .-+||.|.|+.+|..+...++|+.|+
T Consensus 804 ~~~l~~k~~g~~i~~~~~~~~~~~~~~t~~v~~~i~~~h~~~~~~~~~~lt~~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 804 IIELKLKNFGGRITDAQSECNNIGAKYTHCVLRCIDEDHEKIKEQKKASLTIKRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred HHHHHHHHhcceeeeccchhhhcccceeeeeeeecchHHHHHHHHHHHHhcccccccCHHHHHHhhcccccCccccCC
Confidence 444457788988876543 4689999983 334444322 222 34999999999999999999999985
No 29
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=85.60 E-value=0.52 Score=38.83 Aligned_cols=77 Identities=5% Similarity=-0.177 Sum_probs=55.4
Q ss_pred HHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCc
Q 033679 9 IFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGS 88 (113)
Q Consensus 9 ~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p 88 (113)
|.++|+..| ++++|-.-++++++.+.-. . ++..+. .+=.-||+|..++.+. +......|+.+
T Consensus 284 v~d~l~~~k--~~~~~lfr~sc~~~~G~~i-k-Dis~i~----------r~l~~viiId~~p~SY----~~~p~~~i~i~ 345 (390)
T COG5190 284 VLDILDSDK--VFSHRLFRESCVSYLGVYI-K-DISKIG----------RSLDKVIIIDNSPASY----EFHPENAIPIE 345 (390)
T ss_pred HHHhccccc--eeehhhhcccceeccCchh-h-hHHhhc----------cCCCceEEeeCChhhh----hhCccceeccC
Confidence 678899888 9999999999999887511 1 333322 3446699999998766 33335899999
Q ss_pred chHHHHHHhhCCCCCCceec
Q 033679 89 TVDRGSQLFVARATRREVSC 108 (113)
Q Consensus 89 ~WL~~c~~~w~r~dE~~y~~ 108 (113)
.|+.+ ++.+|..|++
T Consensus 346 ~W~~d-----~~d~el~~ll 360 (390)
T COG5190 346 KWISD-----EHDDELLNLL 360 (390)
T ss_pred ccccc-----ccchhhhhhc
Confidence 99998 5556655544
No 30
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=81.32 E-value=8.6 Score=30.81 Aligned_cols=52 Identities=17% Similarity=0.194 Sum_probs=41.8
Q ss_pred HHHHHHhhhhcCCCCcEEEEccccCCCCCccc-hHHHHHHHhcCCEEEeeeCC
Q 033679 9 IFFCTENGQREVLKGCKLVFSHAFPSKFPAHI-HYLWKVVEQLGATCSIELDP 60 (113)
Q Consensus 9 ~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~-~~l~~~a~~lGA~~~~~l~~ 60 (113)
++.++..+++..-++-.+++||-+|.+..++- .++-+.+++.|+.+.-|.+.
T Consensus 116 ~~~~l~~~~~~l~~~d~VvlsGSlP~g~~~d~y~~li~~~~~~g~~vilD~Sg 168 (310)
T COG1105 116 LEQFLEQLKALLESDDIVVLSGSLPPGVPPDAYAELIRILRQQGAKVILDTSG 168 (310)
T ss_pred HHHHHHHHHHhcccCCEEEEeCCCCCCCCHHHHHHHHHHHHhcCCeEEEECCh
Confidence 45677788887888888999999999876543 57778889999999888764
No 31
>KOG3548 consensus DNA damage checkpoint protein RHP9/CRB2/53BP1 [Replication, recombination and repair]
Probab=78.76 E-value=3.1 Score=38.10 Aligned_cols=91 Identities=12% Similarity=0.085 Sum_probs=52.8
Q ss_pred HHHHhhhhcCCCCcEEEEccccCCC----C--CccchHHHHHHHhcCCEEEeee------------CCCccEEEecCCCc
Q 033679 11 FCTENGQREVLKGCKLVFSHAFPSK----F--PAHIHYLWKVVEQLGATCSIEL------------DPSVTHVVSNKCSN 72 (113)
Q Consensus 11 ~il~~~k~~vL~Gc~I~fSg~~p~~----~--~~~~~~l~~~a~~lGA~~~~~l------------~~~vTHlV~~~~~t 72 (113)
.|.|..+.+-|+|-++..++.+... . ...--.+|.-...+|+.-..++ ..-.-||++...++
T Consensus 1050 ~i~~fn~~~nLkd~~l~vk~~l~~~~v~q~gp~~~f~e~~~e~le~G~aa~vd~~hada~~~D~~l~~fdvvl~d~~~~~ 1129 (1176)
T KOG3548|consen 1050 AIEPFNPSENLKDTTLYVKSTLSAREVTQTGPGGTFIEIWKEILELGGAAVVDGYHADAETLDETLLKFDVVLVDGTFRD 1129 (1176)
T ss_pred CccccCchhhccceeeEeeccccceeEEEecCCcchHHHHHHHHHhhchheecccccccccccccccceeEEEecCccHH
Confidence 3444555555666666655542111 0 1122466765555555544443 11234555555556
Q ss_pred HHHHHHHhCCCeecCcchHHHHHHhhCCC
Q 033679 73 EKVSLGSKGGQVFGGSTVDRGSQLFVARA 101 (113)
Q Consensus 73 ~K~~~A~k~gi~IV~p~WL~~c~~~w~r~ 101 (113)
.-.+.|-..+.++|+++|+-+|.-...+.
T Consensus 1130 svmk~ad~l~~pvvs~EWvIQtiI~~~~i 1158 (1176)
T KOG3548|consen 1130 SVMKYADTLGAPVVSSEWVIQTIILGKAI 1158 (1176)
T ss_pred HHHHHHHHhCCCccChhHhheeeeccccC
Confidence 66677777799999999999997655543
No 32
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=76.39 E-value=7.2 Score=32.43 Aligned_cols=60 Identities=18% Similarity=0.202 Sum_probs=42.1
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeee-CCCccEEEecCCCcHHHHHHHhC-CCeecCc
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIEL-DPSVTHVVSNKCSNEKVSLGSKG-GQVFGGS 88 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l-~~~vTHlV~~~~~t~K~~~A~k~-gi~IV~p 88 (113)
+.+||+|++|..+-.+ .++...|......+||.+.-.- ++..|| +.+-.|+.. ||+|...
T Consensus 42 ~~~pl~G~~i~~~~Hl----~~~Ta~l~~~L~~~GA~v~~~~~np~Stq--------d~vaaaL~~~gi~v~a~ 103 (425)
T PRK05476 42 AEKPLKGARIAGCLHM----TIQTAVLIETLKALGAEVRWASCNPFSTQ--------DDVAAALAAAGIPVFAW 103 (425)
T ss_pred ccCCCCCCEEEEEEec----cccHHHHHHHHHHcCCEEEEEeCCCcccC--------HHHHHHHHHCCceEEec
Confidence 3689999999987654 3566788888899999986444 333343 345566654 8998764
No 33
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=72.73 E-value=8.1 Score=32.00 Aligned_cols=59 Identities=15% Similarity=0.135 Sum_probs=40.5
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeee-CCCccEEEecCCCcHHHHHHHhC-CCeecC
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIEL-DPSVTHVVSNKCSNEKVSLGSKG-GQVFGG 87 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l-~~~vTHlV~~~~~t~K~~~A~k~-gi~IV~ 87 (113)
+.+||+|++|..+-.+ .++...|.......||.+.-.- ++-.|+ +-+-.|+.. ||++..
T Consensus 30 ~~~p~~g~~i~~~~hl----~~~ta~l~~~L~~~GA~v~~~~~np~stq--------d~vaa~l~~~gi~v~a 90 (413)
T cd00401 30 ASKPLKGARIAGCLHM----TVQTAVLIETLVALGAEVRWSSCNIFSTQ--------DHAAAAIAAAGIPVFA 90 (413)
T ss_pred ccCCCCCCEEEEEEcc----hHHHHHHHHHHHHcCCEEEEEcCCCccch--------HHHHHHHHhcCceEEE
Confidence 3789999999987654 3566788888899999985433 232232 335555554 888776
No 34
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=70.92 E-value=9.5 Score=31.55 Aligned_cols=57 Identities=16% Similarity=0.111 Sum_probs=38.7
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcH-HHHHHHh-CCCeecC
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNE-KVSLGSK-GGQVFGG 87 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~-K~~~A~k-~gi~IV~ 87 (113)
.+||+|++|..+-.+ .++...|......+||.+.-.- .+| +|+ -+-.|+. .||++..
T Consensus 27 ~~pl~G~~i~~~~hl----~~~Ta~l~~~L~~~GA~v~~~~---------~np~stqd~vaaaL~~~gi~v~a 86 (406)
T TIGR00936 27 EKPLKGARIAACLHV----TVETAVLIETLVAGGAEVAWTS---------CNPLSTQDDVAAALAKAGIPVFA 86 (406)
T ss_pred cCCCCCCEEEEEEec----hHHHHHHHHHHHHcCCEEEEEc---------cCCccccHHHHHHHHhCCceEEE
Confidence 689999999987654 3566788888899999985322 122 233 3445555 4898883
No 35
>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....
Probab=68.98 E-value=6.2 Score=31.08 Aligned_cols=59 Identities=20% Similarity=0.210 Sum_probs=37.4
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeee-CCCccEEEecCCCcHHHHHHHh-CCCeecC
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIEL-DPSVTHVVSNKCSNEKVSLGSK-GGQVFGG 87 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l-~~~vTHlV~~~~~t~K~~~A~k-~gi~IV~ 87 (113)
+.+||+|.+|..+=. ..++...|......+||.|.-.= ++-.|. +-+-.|+. .|+.|..
T Consensus 37 ~~kPl~G~rIa~cLH----le~kTA~L~~tL~a~GAeV~~~~sNplSTQ--------DdvaAAL~~~Gi~V~A 97 (268)
T PF05221_consen 37 AEKPLKGARIAGCLH----LEAKTAVLAETLKALGAEVRWTGSNPLSTQ--------DDVAAALAEEGIPVFA 97 (268)
T ss_dssp TT-TTTTEEEEEES------SHHHHHHHHHHHHTTEEEEEEESSTTT----------HHHHHHHHHTTEEEEE
T ss_pred ccCCCCCCEEEEEEe----chHHHHHHHHHHHHcCCeEEEecCCCcccc--------hHHHHHhccCCceEEE
Confidence 478999999988544 34677889999999999987332 222222 23445554 4777754
No 36
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=47.01 E-value=68 Score=22.25 Aligned_cols=44 Identities=11% Similarity=-0.064 Sum_probs=31.3
Q ss_pred hhHHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcC
Q 033679 7 VLIFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLG 51 (113)
Q Consensus 7 ~~~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lG 51 (113)
..+++++..+|++-+.++.|.+.|.++.+.. ........++.+|
T Consensus 69 ~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~-~~~~~~~~l~~~G 112 (137)
T PRK02261 69 IDCRGLREKCIEAGLGDILLYVGGNLVVGKH-DFEEVEKKFKEMG 112 (137)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEECCCCCCcc-ChHHHHHHHHHcC
Confidence 4578899999999899999999998754211 1223445577787
No 37
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=45.68 E-value=33 Score=23.10 Aligned_cols=55 Identities=15% Similarity=0.193 Sum_probs=35.6
Q ss_pred cchhhhHHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCC
Q 033679 3 SIGWVLIFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDP 60 (113)
Q Consensus 3 ~~~~~~~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~ 60 (113)
|++-..++.++.+..+. |.+++|-|+.+.+..+....+.++.+..+....-.+||
T Consensus 7 SMP~~~L~~l~~~a~~~---~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~~~v~IdP 61 (113)
T PF09673_consen 7 SMPDASLRNLLKQAERA---GVVVVFRGFPDGSFKPTAKAIQELLRKDDPCPGVQIDP 61 (113)
T ss_pred CCCHHHHHHHHHHHHhC---CcEEEEECCCCCCHHHHHHHHHHHhhccCCCcceeECh
Confidence 44555677888888777 99999999987655544445555555444333445555
No 38
>COG5067 DBF4 Protein kinase essential for the initiation of DNA replication [DNA replication, recombination, and repair / Cell division and chromosome partitioning]
Probab=44.25 E-value=17 Score=30.44 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=26.7
Q ss_pred chHHHHHHHhcCCEEEeeeCCCccEEEecCC
Q 033679 40 IHYLWKVVEQLGATCSIELDPSVTHVVSNKC 70 (113)
Q Consensus 40 ~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~ 70 (113)
++.+.+-...+||.+.+.++..|||++..+.
T Consensus 138 khRvk~gf~~LGa~v~tfF~~~VThfiTrR~ 168 (468)
T COG5067 138 KHRVKEGFCELGAVVFTFFEEHVTHFITRRF 168 (468)
T ss_pred HHHHHHHHHHhhhhhheeeccceEEEEEeee
Confidence 3566777889999999999999999999753
No 39
>PRK00724 formate dehydrogenase accessory protein; Reviewed
Probab=42.90 E-value=75 Score=24.53 Aligned_cols=61 Identities=16% Similarity=0.084 Sum_probs=41.3
Q ss_pred HHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecC
Q 033679 9 IFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGG 87 (113)
Q Consensus 9 ~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~ 87 (113)
|+..+ +++-.|++|.+.+||.+|. ++-.-|-..|-.+.-..+. |.+.=++.|.+.|+.+|.
T Consensus 188 iG~al--l~g~~~~~~~l~~SGR~s~-------emv~Ka~~aGipvivS~sa---------PT~lAVelA~~~giTLiG 248 (263)
T PRK00724 188 IGAAL--RAGIPLRDGALLVSGRASS-------EMVQKAAMAGIPILVAVSA---------PTSLAVELAEELGLTLVG 248 (263)
T ss_pred HHHHH--HcCCCccCcEEEEeCCchH-------HHHHHHHHcCCcEEEEccc---------chHHHHHHHHHhCCEEEE
Confidence 44444 3556799999999999874 6666677777666544432 223347788888987775
No 40
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=41.77 E-value=1.5e+02 Score=23.35 Aligned_cols=89 Identities=10% Similarity=-0.139 Sum_probs=59.5
Q ss_pred HHHHHhhhhcCCCCcEEEEccccCCCC---------CccchHHHHHHHhcCCEEEeeeCCCccEEEecCCC---------
Q 033679 10 FFCTENGQREVLKGCKLVFSHAFPSKF---------PAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCS--------- 71 (113)
Q Consensus 10 ~~il~~~k~~vL~Gc~I~fSg~~p~~~---------~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~--------- 71 (113)
..-+....++.+++-++++.|.+..+. ..+......+|..+||....-.+ +|-.+-.++|.
T Consensus 165 ~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~t-dv~Gv~~~dP~~~~~a~~i~ 243 (292)
T cd04258 165 AELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWT-DVAGIYTTDPRICPAARAIK 243 (292)
T ss_pred HHHHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEE-CCCccCCCCCCCCCCCeEec
Confidence 333444444557888999999975432 12245666789999999877664 46666666653
Q ss_pred cHHHHHHHh---CCCeecCcchHHHHHHhhC
Q 033679 72 NEKVSLGSK---GGQVFGGSTVDRGSQLFVA 99 (113)
Q Consensus 72 t~K~~~A~k---~gi~IV~p~WL~~c~~~w~ 99 (113)
.--|..|.+ .|.+|+||..+.-+....-
T Consensus 244 ~isy~Ea~ela~~Gakvlhp~a~~~~~~~~i 274 (292)
T cd04258 244 EISFAEAAEMATFGAKVLHPATLLPAIRKNI 274 (292)
T ss_pred eeCHHHHHHHHHCCCcccCHHHHHHHHHcCC
Confidence 112666765 4899999999998876543
No 41
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=39.88 E-value=35 Score=30.32 Aligned_cols=47 Identities=13% Similarity=0.275 Sum_probs=37.2
Q ss_pred HHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC
Q 033679 9 IFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD 59 (113)
Q Consensus 9 ~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~ 59 (113)
..++-+++| +++|++++|+.+ .+..++...+|++|...+-.+..-+|
T Consensus 90 t~EV~rslr--vlDgavvVvdav--eGV~~QTEtv~rqa~~~~vp~i~fiN 136 (697)
T COG0480 90 TIEVERSLR--VLDGAVVVVDAV--EGVEPQTETVWRQADKYGVPRILFVN 136 (697)
T ss_pred HHHHHHHHH--hhcceEEEEECC--CCeeecHHHHHHHHhhcCCCeEEEEE
Confidence 345555554 799999999998 57888999999999999877766663
No 42
>cd00807 GlnRS_core catalytic core domain of glutaminyl-tRNA synthetase. Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=39.53 E-value=31 Score=26.60 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=23.5
Q ss_pred CEEEeeeCCCccEEEecCC---CcHHHHHHHh
Q 033679 52 ATCSIELDPSVTHVVSNKC---SNEKVSLGSK 80 (113)
Q Consensus 52 A~~~~~l~~~vTHlV~~~~---~t~K~~~A~k 80 (113)
|.+++|....+||+|..+. +|++..+-.+
T Consensus 112 A~vVDD~~~gIThVvRG~D~l~~t~~Q~~l~~ 143 (238)
T cd00807 112 AHPIVDSIEGITHSLCTLEFEDRRPSYYWLCD 143 (238)
T ss_pred ceEeeccccCCCeEEechhhhcCCHHHHHHHH
Confidence 6788888899999999976 7888765544
No 43
>PLN02494 adenosylhomocysteinase
Probab=37.78 E-value=1.1e+02 Score=26.13 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=38.1
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeee-CCCccEEEecCCCcHHHHHHHh-CCCeecC
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIEL-DPSVTHVVSNKCSNEKVSLGSK-GGQVFGG 87 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l-~~~vTHlV~~~~~t~K~~~A~k-~gi~IV~ 87 (113)
.+||+|.+|..+=.+ .++...|......+||.|.-.= ++-.|+ +-+-.|+. .||.|..
T Consensus 41 ~~pl~G~~i~~~lHl----~~kTa~L~~tL~~~GA~v~~~~~Np~sTq--------d~vaaal~~~gi~vfa 100 (477)
T PLN02494 41 SQPFKGARITGSLHM----TIQTAVLIETLTALGAEVRWCSCNIFSTQ--------DHAAAAIARDSAAVFA 100 (477)
T ss_pred cCCCCCCEEEEEEec----hHHHHHHHHHHHHcCCEEEEEcCCCccch--------HHHHHHHHhCCceEEE
Confidence 689999999886553 4567788888999999976322 222222 23445554 4777654
No 44
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=37.44 E-value=92 Score=21.79 Aligned_cols=49 Identities=12% Similarity=0.059 Sum_probs=32.4
Q ss_pred hhHHHHHHhhhhcCCCCcEEEEccc--cCCCCCccchHHHHHHHhcCCEEEeeeCC
Q 033679 7 VLIFFCTENGQREVLKGCKLVFSHA--FPSKFPAHIHYLWKVVEQLGATCSIELDP 60 (113)
Q Consensus 7 ~~~~~il~~~k~~vL~Gc~I~fSg~--~p~~~~~~~~~l~~~a~~lGA~~~~~l~~ 60 (113)
..+++++..+|++=|.++.+.+-|. +|. ++.......++.+| +..-|++
T Consensus 67 ~~~~~~~~~l~~~gl~~~~vivGG~~vi~~---~d~~~~~~~l~~~G--v~~vF~p 117 (134)
T TIGR01501 67 IDCKGLRQKCDEAGLEGILLYVGGNLVVGK---QDFPDVEKRFKEMG--FDRVFAP 117 (134)
T ss_pred HHHHHHHHHHHHCCCCCCEEEecCCcCcCh---hhhHHHHHHHHHcC--CCEEECc
Confidence 4588999999999999999889885 332 11122344567788 4444544
No 45
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=36.17 E-value=1.3e+02 Score=25.22 Aligned_cols=66 Identities=14% Similarity=0.078 Sum_probs=41.4
Q ss_pred CCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCC--cHHH-------HHHHhC-CCeecCcch
Q 033679 21 LKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCS--NEKV-------SLGSKG-GQVFGGSTV 90 (113)
Q Consensus 21 L~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~--t~K~-------~~A~k~-gi~IV~p~W 90 (113)
|+|.+++.+|.= +.- ..+.+.+.++||++..-=+..- .|....| .++. ...... |-..++.+|
T Consensus 205 l~G~rVaVQG~G--NVg---~~aa~~l~~~GAkvva~sds~g--~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e 277 (411)
T COG0334 205 LEGARVAVQGFG--NVG---QYAAEKLHELGAKVVAVSDSKG--GIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEE 277 (411)
T ss_pred cCCCEEEEECcc--HHH---HHHHHHHHHcCCEEEEEEcCCC--ceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccc
Confidence 999999999983 222 3666677777999886544443 2333332 2222 222233 578888899
Q ss_pred HHH
Q 033679 91 DRG 93 (113)
Q Consensus 91 L~~ 93 (113)
+++
T Consensus 278 ~~~ 280 (411)
T COG0334 278 LLE 280 (411)
T ss_pred ccc
Confidence 887
No 46
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=34.03 E-value=2.5e+02 Score=23.94 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=29.0
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeee
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIEL 58 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l 58 (113)
+.+||+|.+|..|=.+ .++...|......+||.|.-.=
T Consensus 39 ~~~pl~G~ri~~~lh~----~~~Ta~l~~tL~~~GA~v~~~~ 76 (476)
T PTZ00075 39 PSKPLKGARITGCLHM----TVQTAVLIETLKALGAEVRWCS 76 (476)
T ss_pred ccCCCCCCEEEEEEcc----hHHHHHHHHHHHHcCCEEEEEc
Confidence 3689999999886543 3556788888899999987443
No 47
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=33.47 E-value=1.2e+02 Score=20.14 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=25.8
Q ss_pred CcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCC--ccEEEecCCCcH
Q 033679 23 GCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPS--VTHVVSNKCSNE 73 (113)
Q Consensus 23 Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~--vTHlV~~~~~t~ 73 (113)
||.+.|+|+ +. +.++..+......+|..-.-++.+. .=||=...+.++
T Consensus 1 G~il~~~g~-~~--~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A 50 (105)
T PF08777_consen 1 GCILKFSGL-GE--PTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAA 50 (105)
T ss_dssp --EEEEEE---S--S--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---H
T ss_pred CeEEEEecC-CC--CcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchH
Confidence 899999995 33 3447899999999998888888764 455656666443
No 48
>cd09287 GluRS_non_core catalytic core domain of non-discriminating glutamyl-tRNA synthetase. Non-discriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Glu to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=33.21 E-value=52 Score=25.36 Aligned_cols=29 Identities=28% Similarity=0.135 Sum_probs=22.7
Q ss_pred CEEEeeeCCCccEEEecCC---CcHHHHHHHh
Q 033679 52 ATCSIELDPSVTHVVSNKC---SNEKVSLGSK 80 (113)
Q Consensus 52 A~~~~~l~~~vTHlV~~~~---~t~K~~~A~k 80 (113)
|.+++|....+||+|..+. +|++..+-.+
T Consensus 114 a~vVDD~~~gIThViRg~d~~~~t~~q~~l~~ 145 (240)
T cd09287 114 AVAVDDHLLGVTHVLRGKDHIDNTEKQRYIYE 145 (240)
T ss_pred ceeeeccccCCCeEEechhhhhCCHHHHHHHH
Confidence 6788888899999999976 7877654433
No 49
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=32.88 E-value=52 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.148 Sum_probs=20.9
Q ss_pred CccEEEecCCC-----cHHHHHHHhCCCeec
Q 033679 61 SVTHVVSNKCS-----NEKVSLGSKGGQVFG 86 (113)
Q Consensus 61 ~vTHlV~~~~~-----t~K~~~A~k~gi~IV 86 (113)
.++.||+.+.| .+|...|.+.||+|+
T Consensus 197 ~i~~lVtK~SG~~Gg~~eKi~AA~~lgi~vi 227 (256)
T TIGR00715 197 RIDAVVTKASGEQGGELEKVKAAEALGINVI 227 (256)
T ss_pred CCCEEEEcCCCCccchHHHHHHHHHcCCcEE
Confidence 68889998763 489999999987655
No 50
>cd00418 GlxRS_core catalytic core domain of glutamyl-tRNA and glutaminyl-tRNA synthetase. Glutamyl-tRNA synthetase(GluRS)/Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Glu or Gln, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea, cellular organelles, and some bacteria lack GlnRS. In these cases, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme. The discriminating form of GluRS differs from GlnRS and the non-discriminating form of GluRS in their C-terminal anti-codon bind
Probab=32.59 E-value=40 Score=25.79 Aligned_cols=29 Identities=10% Similarity=-0.062 Sum_probs=22.4
Q ss_pred CEEEeeeCCCccEEEecCC---CcHHHHHHHh
Q 033679 52 ATCSIELDPSVTHVVSNKC---SNEKVSLGSK 80 (113)
Q Consensus 52 A~~~~~l~~~vTHlV~~~~---~t~K~~~A~k 80 (113)
|.+++|....+||+|..+. +|++..+-.+
T Consensus 100 a~vvDD~~~gIThViRG~D~l~st~~q~~l~~ 131 (230)
T cd00418 100 VHPVDDALMGITHVLRGEDHLDNTPIQDWLYE 131 (230)
T ss_pred cccccccccCCCEEEECHhhhhchHHHHHHHH
Confidence 6778888889999999976 6777654433
No 51
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=32.36 E-value=60 Score=24.94 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=20.2
Q ss_pred CccEEEecCCCc----HHHHHHHhCCCeec
Q 033679 61 SVTHVVSNKCSN----EKVSLGSKGGQVFG 86 (113)
Q Consensus 61 ~vTHlV~~~~~t----~K~~~A~k~gi~IV 86 (113)
.++.||+.+.|. +|...|.+.||+++
T Consensus 190 ~i~~lVtK~SG~~g~~eKi~AA~~lgi~vi 219 (248)
T PRK08057 190 RIDVVVTKNSGGAGTEAKLEAARELGIPVV 219 (248)
T ss_pred CCCEEEEcCCCchhhHHHHHHHHHcCCeEE
Confidence 567788887754 89999999986655
No 52
>PF00189 Ribosomal_S3_C: Ribosomal protein S3, C-terminal domain; InterPro: IPR001351 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S3 is one of the proteins from the small ribosomal subunit. In Escherichia coli, S3 is known to be involved in the binding of initiator Met-tRNA. This family of ribosomal proteins includes S3 from bacteria, algae and plant chloroplast, cyanelle, archaebacteria, plant mitochondria, vertebrates, insects, Caenorhabditis elegans and yeast []. This entry is the C-terminal domain.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_C 2XZM_C 3OAR_C 3OFX_C 1VS7_C 3I1O_C 2WWL_C 3R8O_C 2QAL_C 3J00_C ....
Probab=32.15 E-value=46 Score=21.12 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=19.4
Q ss_pred hHHHHHHhh-hhcCCCCcEEEEccccCC
Q 033679 8 LIFFCTENG-QREVLKGCKLVFSHAFPS 34 (113)
Q Consensus 8 ~~~~il~~~-k~~vL~Gc~I~fSg~~p~ 34 (113)
.+..++..+ +..=..||.|.+||.+..
T Consensus 15 ~i~~~~~~i~~~~~~~GikI~isGRl~g 42 (85)
T PF00189_consen 15 IIKKIIRRIMMNKGIKGIKIQISGRLNG 42 (85)
T ss_dssp HHHHHHHHHHHCTTSSEEEEEEESSGGG
T ss_pred HHHHHHHHHHhhcccceEEEEEeecCCC
Confidence 355566666 444469999999999854
No 53
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=30.23 E-value=58 Score=26.20 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=29.5
Q ss_pred HHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeee
Q 033679 11 FCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIEL 58 (113)
Q Consensus 11 ~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l 58 (113)
-+..+++.+-|.+|-|+|||. ..+.. -++.++...-|-.++++-
T Consensus 65 ~~V~ec~~~~F~ecDIvfsgl-dad~a---geiek~f~eag~iiVsNa 108 (361)
T KOG4777|consen 65 YTVEECTADSFNECDIVFSGL-DADIA---GEIEKLFAEAGTIIVSNA 108 (361)
T ss_pred hhHhhcChhhcccccEEEecC-Cchhh---hhhhHHHHhcCeEEEeCc
Confidence 356788899999999999997 22222 145555666666665544
No 54
>KOG2524 consensus Cobyrinic acid a,c-diamide synthase [Coenzyme transport and metabolism]
Probab=30.02 E-value=30 Score=27.60 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=18.2
Q ss_pred HHHHHHhCCCeecCcchHHHHH
Q 033679 74 KVSLGSKGGQVFGGSTVDRGSQ 95 (113)
Q Consensus 74 K~~~A~k~gi~IV~p~WL~~c~ 95 (113)
-++.|++.||+|.+|+|..+|-
T Consensus 101 AinkAi~aGipv~sp~fy~q~~ 122 (338)
T KOG2524|consen 101 AINKAIDAGIPVTSPAFYAQCP 122 (338)
T ss_pred HHHHHHhcCCCcCCHHHHhhCC
Confidence 3567778899999999998774
No 55
>TIGR03190 benz_CoA_bzdN benzoyl-CoA reductase, bzd-type, N subunit. Members of this family are the N subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=29.99 E-value=1.6e+02 Score=23.76 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=34.4
Q ss_pred hHHHHHHhhhhc---CCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeee
Q 033679 8 LIFFCTENGQRE---VLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIEL 58 (113)
Q Consensus 8 ~~~~il~~~k~~---vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l 58 (113)
+++.++.+++.+ --.+.+|..+|. |. +...+.++.+..||.++.+-
T Consensus 211 ~l~~l~~el~~~~~~~~~~~ril~tG~-~~----~~~~i~~~iE~~G~~VV~~e 259 (377)
T TIGR03190 211 MLKKVLAALPSRKVERKTGARFMTIGS-EN----DDIAFMAMVESVGATIVIDD 259 (377)
T ss_pred HHHHHHHHHHhccccCCCCeEEEEECC-CC----CcHHHHHHHHHCCCEEEEEC
Confidence 467778888754 367899999998 32 33467899999999988554
No 56
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=29.73 E-value=1.2e+02 Score=25.78 Aligned_cols=59 Identities=19% Similarity=0.103 Sum_probs=43.0
Q ss_pred CccchHHHHHHHhcCCEEEeeeCCC------ccEEEecC---CCcHHHHHHHhCCCeecC-cchHHHHHHh
Q 033679 37 PAHIHYLWKVVEQLGATCSIELDPS------VTHVVSNK---CSNEKVSLGSKGGQVFGG-STVDRGSQLF 97 (113)
Q Consensus 37 ~~~~~~l~~~a~~lGA~~~~~l~~~------vTHlV~~~---~~t~K~~~A~k~gi~IV~-p~WL~~c~~~ 97 (113)
+......-+..+.+|+.+..-.++. + ||++. .+.+-+..|+++||+|++ |+||-+=+..
T Consensus 38 D~~~~~~t~~L~~~G~~i~~gh~~~ni~~~~~--VV~s~Ai~~~NpEi~~A~e~~ipi~~r~e~Laelm~~ 106 (459)
T COG0773 38 DLAESPMTQRLEALGIEIFIGHDAENILDADV--VVVSNAIKEDNPEIVAALERGIPVISRAEMLAELMRF 106 (459)
T ss_pred cccccHHHHHHHHCCCeEeCCCCHHHcCCCce--EEEecccCCCCHHHHHHHHcCCCeEcHHHHHHHHHhC
Confidence 3344567778899999998777553 3 56553 478889999999999997 5787765443
No 57
>TIGR02260 benz_CoA_red_B benzoyl-CoA reductase, bcr type, subunit B. This model describes B, or beta, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA.
Probab=28.50 E-value=1.1e+02 Score=25.24 Aligned_cols=48 Identities=17% Similarity=0.245 Sum_probs=32.6
Q ss_pred hHHHHHHhhhhcCC--------------CCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeee
Q 033679 8 LIFFCTENGQREVL--------------KGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIEL 58 (113)
Q Consensus 8 ~~~~il~~~k~~vL--------------~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l 58 (113)
+.+.++.+++.++= ...+|.++|. |... ....+|++.+..||.++.+-
T Consensus 238 ~~~~L~~el~~r~~~g~~~~~~~~~~~~e~~Ril~~G~-P~~~--~~~~~~k~~ee~Ga~VV~~~ 299 (413)
T TIGR02260 238 YYGFLRAEIEQRIAEGKGPITPDGDMGEEKYRLVVEGP-PNWT--NFREFWKLFYDEGAVVVASS 299 (413)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCcccCCCcceEEEEECC-Ccch--hHHHHHHHHHHCCCEEEEEe
Confidence 35666777775422 2569999997 4421 12367888999999999874
No 58
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=27.42 E-value=76 Score=24.36 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=20.5
Q ss_pred CccEEEecCCC----cHHHHHHHhCCCeecC
Q 033679 61 SVTHVVSNKCS----NEKVSLGSKGGQVFGG 87 (113)
Q Consensus 61 ~vTHlV~~~~~----t~K~~~A~k~gi~IV~ 87 (113)
.+++||+.+.| -+|...|++.|++||=
T Consensus 194 ~i~~lVtK~SG~~g~~eKi~AA~~lgi~viv 224 (249)
T PF02571_consen 194 GIDVLVTKESGGSGFDEKIEAARELGIPVIV 224 (249)
T ss_pred CCCEEEEcCCCchhhHHHHHHHHHcCCeEEE
Confidence 45678888764 3799999999977653
No 59
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=26.62 E-value=73 Score=27.41 Aligned_cols=31 Identities=19% Similarity=0.154 Sum_probs=25.2
Q ss_pred CEEEeeeCCCccEEEecCC---CcHHHHHHHhC-C
Q 033679 52 ATCSIELDPSVTHVVSNKC---SNEKVSLGSKG-G 82 (113)
Q Consensus 52 A~~~~~l~~~vTHlV~~~~---~t~K~~~A~k~-g 82 (113)
|.+.+|....+||+|.... +|+++.+-.+. |
T Consensus 194 A~~VDD~l~gITHviRg~E~~~~t~~q~~l~~aLg 228 (523)
T PLN03233 194 ACPIVDSIEGVTHALRTTEYDDRDAQFFWIQKALG 228 (523)
T ss_pred ceeeeccccCCCeEEechhhhcCCHHHHHHHHHhC
Confidence 7788888899999999976 78998766553 5
No 60
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=26.12 E-value=1.8e+02 Score=22.54 Aligned_cols=81 Identities=16% Similarity=0.007 Sum_probs=54.4
Q ss_pred hhhhcCCCCcEEEEcc--ccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCc----HH-----HHHHHhCCC
Q 033679 15 NGQREVLKGCKLVFSH--AFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSN----EK-----VSLGSKGGQ 83 (113)
Q Consensus 15 ~~k~~vL~Gc~I~fSg--~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t----~K-----~~~A~k~gi 83 (113)
+..+..-+|-+++|+| --|--. ..+...-.|+.++|.+....+..|-.|-..+|+. .| |+.+++.+.
T Consensus 117 ~A~~~l~~grVvIf~gGtg~P~fT--TDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l 194 (238)
T COG0528 117 EAIRHLEKGRVVIFGGGTGNPGFT--TDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGL 194 (238)
T ss_pred HHHHHHHcCCEEEEeCCCCCCCCc--hHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcC
Confidence 3334445688999998 555422 3345566699999999999999999999988842 22 556666666
Q ss_pred eecCcchHHHHHHh
Q 033679 84 VFGGSTVDRGSQLF 97 (113)
Q Consensus 84 ~IV~p~WL~~c~~~ 97 (113)
.++.+.=+.=|...
T Consensus 195 ~vmD~tA~~l~~~~ 208 (238)
T COG0528 195 KVMDPTAFSLARDN 208 (238)
T ss_pred eeecHHHHHHHHHc
Confidence 66665544444433
No 61
>COG0008 GlnS Glutamyl- and glutaminyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=26.03 E-value=54 Score=27.77 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=24.1
Q ss_pred CEEEeeeCCCccEEEecCC---CcHHHHHHHh
Q 033679 52 ATCSIELDPSVTHVVSNKC---SNEKVSLGSK 80 (113)
Q Consensus 52 A~~~~~l~~~vTHlV~~~~---~t~K~~~A~k 80 (113)
|.|++|..-.+||+|..+. +|.|..+-.+
T Consensus 197 avvvDD~~mgITHviRG~d~~~nt~~q~~l~~ 228 (472)
T COG0008 197 AVVVDDHLMGITHVLRGEDHLDNTPRQIWLYE 228 (472)
T ss_pred eeeechhhcCCceEEechhhccCCHHHHHHHH
Confidence 7788888889999999976 7999776544
No 62
>KOG2093 consensus Translesion DNA polymerase - REV1 deoxycytidyl transferase [Replication, recombination and repair]
Probab=26.02 E-value=93 Score=28.79 Aligned_cols=86 Identities=5% Similarity=-0.192 Sum_probs=57.1
Q ss_pred CCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEE-eeeCCCccEEEecCCCcHHHHHHHhC-CCeecCcchHHHHHHh
Q 033679 20 VLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCS-IELDPSVTHVVSNKCSNEKVSLGSKG-GQVFGGSTVDRGSQLF 97 (113)
Q Consensus 20 vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~-~~l~~~vTHlV~~~~~t~K~~~A~k~-gi~IV~p~WL~~c~~~ 97 (113)
.++|.-|+-.|.. .+....+.+.-...|+... ...-+.+||+|+.+....|++ .. +=...++.|+.+|++.
T Consensus 47 ~fs~is~~~ngs~----~e~~nelk~~~~~~t~~~~~~~~rs~T~~ii~~~l~a~~vk---~~~~~~~~~~e~iie~~~~ 119 (1016)
T KOG2093|consen 47 SFSGISISVNGST----DESANELKLQNMFHTGASAASYERSGTENIIAQGLPADLVK---GFTIPKHISIEWIIECCEN 119 (1016)
T ss_pred eeeeeeeccCCcc----ccchHHHhhhhhhcccccccccccccceeeecccchHHHhc---cccchhhhcHHHHHHHHhc
Confidence 3444444444432 3333456666667777666 677788999999885433332 22 2456789999999999
Q ss_pred hCCCCCCceeccCCC
Q 033679 98 VARATRREVSCEANQ 112 (113)
Q Consensus 98 w~r~dE~~y~~~~~~ 112 (113)
.+-+.=.+|..+.+|
T Consensus 120 ~~~~~~~~~~~~t~~ 134 (1016)
T KOG2093|consen 120 GMDVGYYPYQLYTGQ 134 (1016)
T ss_pred cCccccccceeeccc
Confidence 998888888777665
No 63
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=25.29 E-value=90 Score=27.82 Aligned_cols=39 Identities=15% Similarity=0.350 Sum_probs=30.8
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD 59 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~ 59 (113)
+||+||+.++-++ .+.+.+....|+++...|.-....++
T Consensus 126 rVlDGaVlvl~aV--~GVqsQt~tV~rQ~~ry~vP~i~FiN 164 (721)
T KOG0465|consen 126 RVLDGAVLVLDAV--AGVESQTETVWRQMKRYNVPRICFIN 164 (721)
T ss_pred hhccCeEEEEEcc--cceehhhHHHHHHHHhcCCCeEEEEe
Confidence 5899999999887 46777788999999977766655553
No 64
>COG2450 Uncharacterized conserved protein [Function unknown]
Probab=25.18 E-value=1.4e+02 Score=20.95 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=36.9
Q ss_pred HHhhhhcCCCCcEEEEccccCCCCCccc-----hHHHHHHHhcCCEEEeeeCCCccEEEecCCC
Q 033679 13 TENGQREVLKGCKLVFSHAFPSKFPAHI-----HYLWKVVEQLGATCSIELDPSVTHVVSNKCS 71 (113)
Q Consensus 13 l~~~k~~vL~Gc~I~fSg~~p~~~~~~~-----~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~ 71 (113)
+.++++++-.| .|+.--+-|...++.. ..|...|+.+||-+..-=++ ||+.+.+|
T Consensus 54 l~~~~~eiy~G-NIvIaDit~l~~d~~~~~~V~e~lr~~a~~~ggdi~~l~~n---~viITP~~ 113 (124)
T COG2450 54 LEEAKREIYAG-NIVIADITPLERDDDLFERVIEELRDTAEEVGGDIAKLGDN---VVIITPNG 113 (124)
T ss_pred HHHHHHHHhcC-CEEEEEcCCcccChhHHHHHHHHHHHHHHHhCchhhhhcCC---EEEECCCC
Confidence 45777888888 8887776555433322 56778889999887654443 77776543
No 65
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.14 E-value=83 Score=27.12 Aligned_cols=36 Identities=19% Similarity=0.141 Sum_probs=28.8
Q ss_pred hHHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHh
Q 033679 8 LIFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQ 49 (113)
Q Consensus 8 ~~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~ 49 (113)
-|+.++.++|.+-+.-..|.||.++|. +.+.++|++
T Consensus 78 niq~L~~ELrnPry~~Y~lyFsN~i~k------s~le~LAes 113 (549)
T KOG1299|consen 78 NIQLLIEELRNPRYGEYHLYFSNIISK------SDLERLAES 113 (549)
T ss_pred HHHHHHHHhcCCcceeEEEEEeccCCH------HHHHHHHhc
Confidence 378889999999999999999999864 455555553
No 66
>PF08585 DUF1767: Domain of unknown function (DUF1767); InterPro: IPR013894 This domain is present in eukaryotic proteins of unknown function, and is sometimes found to the N terminus of ubiquitin-binding and nucleic acid-binding domains. ; PDB: 3NBI_A.
Probab=25.13 E-value=34 Score=21.69 Aligned_cols=16 Identities=6% Similarity=-0.141 Sum_probs=9.2
Q ss_pred CCCeecCcchHHHHHHh
Q 033679 81 GGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 81 ~gi~IV~p~WL~~c~~~ 97 (113)
.| .-|+++||.+|...
T Consensus 7 ~g-~~l~~~wl~~c~~~ 22 (90)
T PF08585_consen 7 RG-WHLSPEWLEECVEY 22 (90)
T ss_dssp H------HHHHHHHHHH
T ss_pred cC-CCcCHHHHHHHHHH
Confidence 35 56899999999865
No 67
>PRK07168 bifunctional uroporphyrinogen-III methyltransferase/uroporphyrinogen-III synthase; Reviewed
Probab=24.83 E-value=84 Score=26.47 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=30.7
Q ss_pred HHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEe
Q 033679 12 CTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSI 56 (113)
Q Consensus 12 il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~ 56 (113)
-++-...+||.|.+|.+++-- .+...+....+.+||.+..
T Consensus 240 ~~~~~~~~PL~G~~IlVtR~~-----~q~~~l~~~L~~~GA~v~~ 279 (474)
T PRK07168 240 QIAWKERKPLHGKKVLFTSAT-----NKTSVMKQKLQEAGAEIYQ 279 (474)
T ss_pred ccchhhcccccCceEEeeccH-----HHHHHHHHHHHHcCCEEEE
Confidence 344446799999999997642 2446889999999998875
No 68
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=24.39 E-value=2.6e+02 Score=22.57 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=29.9
Q ss_pred HHHHHHhhhh---cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEee
Q 033679 9 IFFCTENGQR---EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIE 57 (113)
Q Consensus 9 ~~~il~~~k~---~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~ 57 (113)
+...+.+++. ....+.+|.++|. |.... ...+-++.+..||.++.+
T Consensus 216 L~~~l~el~~~~~~~~~~~RIl~tG~-~~~~~--~~k~~~~iE~~G~~VV~d 264 (380)
T TIGR02263 216 LADYLAAARKQEAPIKDNCRVIICGM-FCEQP--PLNLIKSIELSGCYIVDD 264 (380)
T ss_pred HHHHHHHHHhccccCCCCCEEEEECc-CCCCc--hHHHHHHHHHCCCEEEEe
Confidence 4555665542 3357899999994 33211 135667899999998855
No 69
>PTZ00402 glutamyl-tRNA synthetase; Provisional
Probab=24.11 E-value=72 Score=27.96 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=25.3
Q ss_pred CEEEeeeCCCccEEEecCC---CcHHHHHHHhC-C
Q 033679 52 ATCSIELDPSVTHVVSNKC---SNEKVSLGSKG-G 82 (113)
Q Consensus 52 A~~~~~l~~~vTHlV~~~~---~t~K~~~A~k~-g 82 (113)
|.+.+|....+||+|+... +|+++.+-.+. |
T Consensus 236 A~vVDD~l~gITHvlRg~E~l~~tp~q~~L~~aLg 270 (601)
T PTZ00402 236 CCPIIDSVEGVTHALRTNEYHDRNDQYYWFCDALG 270 (601)
T ss_pred ceeeEccccCCceEeechhhhhCcHHHHHHHHHhC
Confidence 7788888899999999975 78898776553 5
No 70
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=23.33 E-value=2.2e+02 Score=18.82 Aligned_cols=25 Identities=12% Similarity=-0.182 Sum_probs=16.4
Q ss_pred HHHHHHhhhhcCCCCcEEEEccccC
Q 033679 9 IFFCTENGQREVLKGCKLVFSHAFP 33 (113)
Q Consensus 9 ~~~il~~~k~~vL~Gc~I~fSg~~p 33 (113)
++.++..+|++-+.++.+.+.|..|
T Consensus 67 ~~~~~~~L~~~~~~~i~i~~GG~~~ 91 (122)
T cd02071 67 FPEVIELLRELGAGDILVVGGGIIP 91 (122)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCC
Confidence 4666777777666677777766543
No 71
>KOG3957 consensus Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase [Lipid transport and metabolism]
Probab=23.32 E-value=99 Score=25.52 Aligned_cols=32 Identities=25% Similarity=0.364 Sum_probs=24.5
Q ss_pred cCCCCcEEE-EccccCCCCCccchHHHHHHHhcCCEEEe
Q 033679 19 EVLKGCKLV-FSHAFPSKFPAHIHYLWKVVEQLGATCSI 56 (113)
Q Consensus 19 ~vL~Gc~I~-fSg~~p~~~~~~~~~l~~~a~~lGA~~~~ 56 (113)
.+|+|..|+ +||+.|. | .--.....|||+|..
T Consensus 3 ~pL~GIkVlelsglapg---P---fC~MvLaDfGA~V~~ 35 (387)
T KOG3957|consen 3 MPLSGIKVLELSGLAPG---P---FCGMVLADFGAEVTK 35 (387)
T ss_pred cccCCcEEEEeccccCC---c---hhhhhhhhcCceEEE
Confidence 579999876 8999885 2 445667899999863
No 72
>KOG3908 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification]
Probab=22.87 E-value=67 Score=26.19 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=42.8
Q ss_pred CccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHHHhhCCCCCCc-eec
Q 033679 37 PAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQLFVARATRRE-VSC 108 (113)
Q Consensus 37 ~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~~~w~r~dE~~-y~~ 108 (113)
.||++.- +-.++||-+.-.+|+ ||..-..+++++.|..+. +.||..|...-.|.||.. |++
T Consensus 132 tPE~Si~--iQnalG~DImMQLDd----VV~~~ttg~rveeAM~Rs-----IRWlDRCi~Ah~R~d~Q~lFpI 193 (396)
T KOG3908|consen 132 TPEKSIE--IQNALGADIMMQLDD----VVHTLTTGPRVEEAMYRS-----IRWLDRCIMAHNRDDEQNLFPI 193 (396)
T ss_pred CchhhHH--HHHHhchhhhhhhhc----cccccCCchHHHHHHHHH-----HHHHHHHHHHhcCccchhhhhh
Confidence 4454433 347899988888864 333344457899998875 579999999999999653 443
No 73
>COG3113 Predicted NTP binding protein (contains STAS domain) [General function prediction only]
Probab=22.61 E-value=1.4e+02 Score=20.13 Aligned_cols=38 Identities=18% Similarity=0.346 Sum_probs=26.6
Q ss_pred cchhhhHHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcC
Q 033679 3 SIGWVLIFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLG 51 (113)
Q Consensus 3 ~~~~~~~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lG 51 (113)
|-|..|.=+++...|++ |+.+.++|+ | ..+..+++.+|
T Consensus 54 SaglALL~~~~~~~k~~---g~~~~L~~~-p-------~~L~tLa~Ly~ 91 (99)
T COG3113 54 SAGLALLLHLIRLAKKQ---GNAVTLTGV-P-------EQLRTLAELYN 91 (99)
T ss_pred hHHHHHHHHHHHHHHHc---CCeeEEecC-c-------HHHHHHHHHhC
Confidence 55777777777777764 678888776 4 26677777665
No 74
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=22.25 E-value=3.9e+02 Score=20.93 Aligned_cols=78 Identities=8% Similarity=-0.183 Sum_probs=53.5
Q ss_pred CCCCcEEEEccccCC---------CCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCC----cHH-----HHHHHh-
Q 033679 20 VLKGCKLVFSHAFPS---------KFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCS----NEK-----VSLGSK- 80 (113)
Q Consensus 20 vL~Gc~I~fSg~~p~---------~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~----t~K-----~~~A~k- 80 (113)
.-+|-++++.|.+.. +..-+......+|..+||....-.+ +|..+-.++|+ ..+ |+.|.+
T Consensus 171 ~~~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~t-dVdGvytaDPr~v~~A~~i~~lsy~EA~el 249 (288)
T cd04245 171 RDSDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFT-DVDGIYAANPRIVANPKPISEMTYREMREL 249 (288)
T ss_pred HhCCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEe-CCCceECCCCCCCCCCeEeCccCHHHHHHH
Confidence 334678888888732 2234456667789999998777665 78888887763 111 667766
Q ss_pred --CCCeecCcchHHHHHHhh
Q 033679 81 --GGQVFGGSTVDRGSQLFV 98 (113)
Q Consensus 81 --~gi~IV~p~WL~~c~~~w 98 (113)
.|.+|+||.=+.-|....
T Consensus 250 a~~GakVlhp~ai~~a~~~~ 269 (288)
T cd04245 250 SYAGFSVFHDEALIPAIEAG 269 (288)
T ss_pred HHCCCcccCHHHHHHHHHCC
Confidence 489999998666665543
No 75
>TIGR03642 cas_csx13 CRISPR-associated protein, Csx13 family. This model describes a protein N-terminal protein sequence domain strictly associated with CRISPR and CRISPR-associated protein systems. This model and TIGR02584 identify two separate clades from a larger homology domain family, both CRISPR-associated, while other homologs are found that may not be. Members are found in bacteria that include Pelotomaculum thermopropionicum SI, Thermoanaerobacter tengcongensis MB4, and Roseiflexus sp. RS-1, and in archaea that include Thermoplasma volcanium, Picrophilus torridus, and Methanospirillum hungatei. The molecular function is unknown.
Probab=21.51 E-value=1.6e+02 Score=20.36 Aligned_cols=48 Identities=10% Similarity=-0.081 Sum_probs=27.2
Q ss_pred hHHHHHHhhhhcCCC-CcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEE
Q 033679 8 LIFFCTENGQREVLK-GCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVV 66 (113)
Q Consensus 8 ~~~~il~~~k~~vL~-Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV 66 (113)
.|...+.++|.+.-. -.++++|| |.+--.-.+...+..|| .+.+-|+|
T Consensus 76 ~I~~~i~~l~~~~~~~~lh~~iaG----GRK~Ms~~~~~a~sl~g-------~Drl~Hv~ 124 (124)
T TIGR03642 76 IAAKEVKKERENYGCERIIVNISG----GRKIMTIILALYAQLLF-------EDEVYHII 124 (124)
T ss_pred HHHHHHHHHhhCCCcceEEEEecC----CHHHHHHHHHHHHHHhC-------CcceeeeC
Confidence 466667777776543 56777766 33322234444555666 56666664
No 76
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=21.12 E-value=1.6e+02 Score=27.42 Aligned_cols=67 Identities=12% Similarity=0.003 Sum_probs=46.6
Q ss_pred cchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHH----hCCCeecCcchHHHHHHhhCCCCCCceeccCC
Q 033679 39 HIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGS----KGGQVFGGSTVDRGSQLFVARATRREVSCEAN 111 (113)
Q Consensus 39 ~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~----k~gi~IV~p~WL~~c~~~w~r~dE~~y~~~~~ 111 (113)
+...|-.+|+.|||...+++-++||- + -+-|-.|+ +++|.|-..+=+.+-...-.--||..|+++..
T Consensus 670 eD~RL~~LAerfGGVLLSEiYDDvtI----e--DAPYFSAlYGPsRHaIVV~DL~~vke~L~~L~dCPeDLYLIEGD 740 (1480)
T COG3096 670 EDQRLNALAERFGGVLLSEIYDDVTI----E--DAPYFSALYGPSRHAIVVPDLSQVKEHLEGLTDCPEDLYLIEGD 740 (1480)
T ss_pred ccHHHHHHHHHhcceeHHHHhccCcc----c--cchhHHHhhCcccceeeeccHHHHHHHHhhhccCcchheeecCC
Confidence 44689999999999999999999885 2 22344443 23455545555666666666678899988753
No 77
>PRK05347 glutaminyl-tRNA synthetase; Provisional
Probab=20.92 E-value=1.1e+02 Score=26.68 Aligned_cols=30 Identities=13% Similarity=0.082 Sum_probs=24.2
Q ss_pred CEEEeeeCCCccEEEecCC---CcHHHHHHHhC
Q 033679 52 ATCSIELDPSVTHVVSNKC---SNEKVSLGSKG 81 (113)
Q Consensus 52 A~~~~~l~~~vTHlV~~~~---~t~K~~~A~k~ 81 (113)
|.+..|--..+||+++... +|+|+.+-.+.
T Consensus 217 A~~vdD~l~gITHvlRg~E~~~~t~~~~~i~~a 249 (554)
T PRK05347 217 AHCISDAIEGITHSLCTLEFEDHRPLYDWVLDN 249 (554)
T ss_pred cceeeccccCCceEEeccccccChHHHHHHHHH
Confidence 6777888889999999965 78998776553
No 78
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=20.91 E-value=2.2e+02 Score=17.55 Aligned_cols=60 Identities=10% Similarity=0.323 Sum_probs=34.1
Q ss_pred CCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC--CcHH--HHHHHhCCC--eecCcch
Q 033679 22 KGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC--SNEK--VSLGSKGGQ--VFGGSTV 90 (113)
Q Consensus 22 ~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~--~t~K--~~~A~k~gi--~IV~p~W 90 (113)
+|-+|+|+|- .+.. +.+.+|......=++. +..+ ||.... |.++ .++|.++|+ ....|+|
T Consensus 2 ~g~rVli~Gg--R~~~-D~~~i~~~Ld~~~~~~-----~~~~-lvhGga~~GaD~iA~~wA~~~gv~~~~~~adW 67 (71)
T PF10686_consen 2 EGMRVLITGG--RDWT-DHELIWAALDKVHARH-----PDMV-LVHGGAPKGADRIAARWARERGVPVIRFPADW 67 (71)
T ss_pred CCCEEEEEEC--Cccc-cHHHHHHHHHHHHHhC-----CCEE-EEECCCCCCHHHHHHHHHHHCCCeeEEeCcCh
Confidence 4778899885 3333 3445665544433333 3334 666543 4444 367888885 4456677
No 79
>TIGR00440 glnS glutaminyl-tRNA synthetase. This protein is a relatively rare aminoacyl-tRNA synthetase, found in the cytosolic compartment of eukaryotes, in E. coli and a number of other Gram-negative Bacteria, and in Deinococcus radiodurans. In contrast, the pathway to Gln-tRNA in mitochondria, Archaea, Gram-positive Bacteria, and a number of other lineages is by misacylation with Glu followed by transamidation to correct the aminoacylation to Gln. This enzyme is a class I tRNA synthetase (hit by the pfam model tRNA-synt_1c) and is quite closely related to glutamyl-tRNA synthetases.
Probab=20.86 E-value=70 Score=27.49 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=25.2
Q ss_pred CEEEeeeCCCccEEEecCC---CcHHHHHHHhC-CC
Q 033679 52 ATCSIELDPSVTHVVSNKC---SNEKVSLGSKG-GQ 83 (113)
Q Consensus 52 A~~~~~l~~~vTHlV~~~~---~t~K~~~A~k~-gi 83 (113)
|.+.+|.-..+||+|+.+. +|.+|++-.+. ++
T Consensus 188 a~~vdD~l~gITHviRg~E~~~nt~~Y~~~~~~l~~ 223 (522)
T TIGR00440 188 THCISDAMENITHSLCTLEFQDNRRLYDWVLDNIHI 223 (522)
T ss_pred ceeehhccCCCceEeecHhhhhcHHHHHHHHHhcCc
Confidence 6777778889999999976 78888877643 54
No 80
>TIGR03838 queuosine_YadB glutamyl-queuosine tRNA(Asp) synthetase. This protein resembles a shortened glutamyl-tRNA ligase, but its purpose is to modify tRNA(Asp) at a queuosine position in the anticodon rather than to charge a tRNA with its cognate amino acid.
Probab=20.49 E-value=55 Score=25.61 Aligned_cols=28 Identities=21% Similarity=0.138 Sum_probs=21.6
Q ss_pred CEEEeeeCCCccEEEecCC---CcHHHHHHH
Q 033679 52 ATCSIELDPSVTHVVSNKC---SNEKVSLGS 79 (113)
Q Consensus 52 A~~~~~l~~~vTHlV~~~~---~t~K~~~A~ 79 (113)
|.+++|....+||+|-.+. +|.|..+-.
T Consensus 176 A~vVDD~~~gIThViRG~D~l~~t~~q~~l~ 206 (272)
T TIGR03838 176 AVVVDDAAQGITHVVRGADLLDSTPRQIYLQ 206 (272)
T ss_pred hhhhhcccCCCCEEEeCHhhhhccHHHHHHH
Confidence 5677777889999999984 788865443
Done!