Query 033679
Match_columns 113
No_of_seqs 105 out of 361
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 07:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/033679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/033679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ef1_A RNA polymerase II subun 100.0 1.7E-29 5.7E-34 205.4 9.5 102 8-109 340-442 (442)
2 3ef0_A RNA polymerase II subun 100.0 1.4E-28 4.6E-33 196.4 10.5 101 9-109 271-372 (372)
3 3l3e_A DNA topoisomerase 2-bin 99.9 8.8E-27 3E-31 156.0 9.7 94 14-111 9-105 (107)
4 3pa6_A Microcephalin; BRCT dom 99.9 4.8E-25 1.6E-29 149.1 9.3 97 15-111 2-98 (107)
5 3l46_A Protein ECT2; alternati 99.9 2.6E-26 8.8E-31 156.7 3.1 97 13-113 14-110 (112)
6 2cou_A ECT2 protein; BRCT doma 99.9 2.4E-26 8.3E-31 155.1 2.6 94 15-112 7-100 (109)
7 2d8m_A DNA-repair protein XRCC 99.9 1.2E-24 4E-29 150.4 8.9 91 17-111 19-109 (129)
8 4id3_A DNA repair protein REV1 99.9 4.1E-23 1.4E-27 133.3 8.6 87 17-109 4-92 (92)
9 2ebw_A DNA repair protein REV1 99.9 6.7E-22 2.3E-26 129.5 7.9 87 17-109 9-96 (97)
10 3olc_X DNA topoisomerase 2-bin 99.9 9E-22 3.1E-26 152.5 8.2 95 14-112 193-288 (298)
11 1wf6_A Similar to S.pombe -RAD 99.8 9.9E-21 3.4E-25 131.1 8.0 94 12-110 32-128 (132)
12 3pc6_A DNA repair protein XRCC 99.8 2.9E-20 9.8E-25 125.2 8.8 89 19-110 6-96 (104)
13 1l0b_A BRCA1; TANDEM-BRCT, thr 99.8 3.3E-20 1.1E-24 136.7 7.9 90 17-110 1-96 (229)
14 2nte_A BARD-1, BRCA1-associate 99.8 2.6E-19 8.7E-24 131.1 8.0 85 22-110 1-88 (210)
15 1t15_A Breast cancer type 1 su 99.8 3.1E-19 1.1E-23 129.7 7.3 84 22-109 3-92 (214)
16 3sqd_A PAX-interacting protein 99.8 3.5E-19 1.2E-23 132.6 6.2 91 15-110 8-99 (219)
17 2etx_A Mediator of DNA damage 99.8 9.7E-19 3.3E-23 128.6 7.4 86 16-109 5-91 (209)
18 3al2_A DNA topoisomerase 2-bin 99.7 2.1E-17 7.2E-22 124.2 8.5 88 19-110 5-95 (235)
19 3olc_X DNA topoisomerase 2-bin 99.7 2.8E-17 9.6E-22 127.3 7.6 85 18-106 103-187 (298)
20 3u3z_A Microcephalin; DNA repa 99.7 9.3E-17 3.2E-21 117.8 8.2 86 22-111 10-97 (199)
21 2jw5_A DNA polymerase lambda; 99.7 2.4E-17 8.1E-22 110.9 3.3 92 15-109 6-104 (106)
22 3l41_A BRCT-containing protein 99.6 1.8E-16 6.2E-21 118.3 5.8 83 19-109 4-87 (220)
23 1kzy_C Tumor suppressor P53-bi 99.6 2.6E-15 8.9E-20 114.0 7.8 94 18-111 13-138 (259)
24 2vxb_A DNA repair protein RHP9 99.6 7.6E-15 2.6E-19 110.5 7.8 92 19-111 1-119 (241)
25 3ii6_X DNA ligase 4; XRCC4, NH 99.5 1.9E-14 6.6E-19 109.3 8.6 91 13-108 3-95 (263)
26 3ii6_X DNA ligase 4; XRCC4, NH 99.5 2.5E-14 8.7E-19 108.7 8.2 93 16-108 160-263 (263)
27 1l7b_A DNA ligase; BRCT, autos 99.5 5.2E-14 1.8E-18 92.6 5.9 77 18-98 5-81 (92)
28 2k6g_A Replication factor C su 99.4 3.4E-13 1.1E-17 91.2 7.7 81 14-97 26-107 (109)
29 1z56_C DNA ligase IV; DNA repa 99.4 8.8E-14 3E-18 104.6 2.9 91 16-109 156-262 (264)
30 2ebu_A Replication factor C su 99.4 6.1E-13 2.1E-17 90.4 6.7 90 13-106 15-105 (112)
31 2ep8_A Pescadillo homolog 1; A 99.4 1E-12 3.5E-17 87.5 6.0 81 17-107 9-100 (100)
32 2coe_A Deoxynucleotidyltransfe 99.4 3.4E-12 1.2E-16 87.7 8.6 87 19-108 19-113 (120)
33 2cok_A Poly [ADP-ribose] polym 99.3 2.6E-12 8.8E-17 87.4 6.3 76 18-97 8-86 (113)
34 1l0b_A BRCA1; TANDEM-BRCT, thr 99.3 5.3E-12 1.8E-16 92.6 6.5 92 17-111 114-215 (229)
35 1t15_A Breast cancer type 1 su 99.3 4.3E-12 1.5E-16 91.8 5.2 91 17-110 112-212 (214)
36 1z56_C DNA ligase IV; DNA repa 99.2 1.5E-12 5.1E-17 97.9 0.9 91 17-108 2-100 (264)
37 3pc7_A DNA ligase 3; DNA repai 99.1 6.3E-11 2.2E-15 77.4 5.3 73 19-104 15-88 (88)
38 3u3z_A Microcephalin; DNA repa 99.0 1.6E-10 5.6E-15 84.4 4.5 82 17-109 116-198 (199)
39 2dun_A POL MU, DNA polymerase 99.0 2.8E-10 9.7E-15 79.3 5.0 85 20-107 10-105 (133)
40 2etx_A Mediator of DNA damage 99.0 1.3E-09 4.4E-14 79.7 8.6 90 16-110 111-203 (209)
41 1kzy_C Tumor suppressor P53-bi 98.9 1.2E-09 4.2E-14 82.6 6.6 89 17-108 152-251 (259)
42 2nte_A BARD-1, BRCA1-associate 98.9 1.5E-09 5.1E-14 78.9 4.3 84 18-104 102-209 (210)
43 3sqd_A PAX-interacting protein 98.5 5.9E-07 2E-11 66.4 9.0 89 15-108 117-218 (219)
44 1dgs_A DNA ligase; AMP complex 98.5 1.5E-08 5.1E-13 86.0 0.0 75 18-96 585-659 (667)
45 2owo_A DNA ligase; protein-DNA 98.5 1.8E-08 6.1E-13 85.5 0.0 75 18-95 595-669 (671)
46 2vxb_A DNA repair protein RHP9 98.4 2.9E-07 9.9E-12 68.9 5.6 81 16-102 147-240 (241)
47 3al2_A DNA topoisomerase 2-bin 98.1 2.7E-06 9.1E-11 63.5 5.0 88 18-110 133-230 (235)
48 3t7k_A RTT107, regulator of TY 98.0 3.3E-05 1.1E-09 58.8 8.7 98 10-110 9-120 (256)
49 3huf_A DNA repair and telomere 97.9 8.4E-06 2.9E-10 63.9 4.9 57 40-97 126-187 (325)
50 4gns_A Chitin biosynthesis pro 97.9 4.8E-05 1.7E-09 56.1 7.4 96 16-112 157-257 (290)
51 2l42_A DNA-binding protein RAP 97.3 0.00032 1.1E-08 46.6 4.9 87 18-112 9-98 (106)
52 3l41_A BRCT-containing protein 97.0 0.0011 3.7E-08 49.0 5.2 88 17-107 110-213 (220)
53 3qbz_A DDK kinase regulatory s 96.9 0.0011 3.8E-08 47.2 4.9 70 18-87 56-142 (160)
54 3oq0_A DBF4, protein DNA52; DD 96.9 0.004 1.4E-07 43.9 7.3 76 18-93 18-110 (151)
55 3oq4_A DBF4, protein DNA52; DD 96.6 0.0038 1.3E-07 43.3 5.6 71 23-93 7-93 (134)
56 3t7k_A RTT107, regulator of TY 77.4 2.6 8.8E-05 31.9 4.1 82 14-99 129-240 (256)
57 3gvp_A Adenosylhomocysteinase 68.9 8.9 0.00031 30.9 5.6 58 17-87 48-108 (435)
58 3h9u_A Adenosylhomocysteinase; 60.8 12 0.00041 30.1 4.9 57 17-86 37-96 (436)
59 3pmo_A UDP-3-O-[3-hydroxymyris 53.1 4 0.00014 31.6 0.9 66 29-94 12-91 (372)
60 3ond_A Adenosylhomocysteinase; 52.2 18 0.00062 29.5 4.6 58 17-87 51-111 (488)
61 3o3m_B Beta subunit 2-hydroxya 46.7 34 0.0012 26.4 5.3 47 8-59 211-260 (385)
62 3o3m_A Alpha subunit 2-hydroxy 32.4 55 0.0019 25.4 4.5 50 8-60 233-291 (408)
63 1y9j_A SEC1 family domain cont 31.2 58 0.002 22.4 3.9 35 8-48 105-139 (159)
64 3d64_A Adenosylhomocysteinase; 29.2 53 0.0018 26.7 3.9 35 17-55 69-103 (494)
65 3ce6_A Adenosylhomocysteinase; 28.5 54 0.0019 26.5 3.9 35 17-55 54-88 (494)
66 1v8b_A Adenosylhomocysteinase; 28.1 56 0.0019 26.4 3.9 35 17-55 40-74 (479)
67 3n58_A Adenosylhomocysteinase; 27.3 59 0.002 26.4 3.9 58 17-87 39-99 (464)
68 3vqt_A RF-3, peptide chain rel 27.2 38 0.0013 27.5 2.8 46 10-59 115-160 (548)
69 1cn3_F Fragment of coat protei 26.2 16 0.00053 18.1 0.2 10 84-93 13-22 (29)
70 4ed9_A CAIB/BAIF family protei 24.6 45 0.0015 26.0 2.6 38 16-59 5-43 (385)
71 4evu_A Putative periplasmic pr 24.0 71 0.0024 19.3 2.9 33 25-58 22-54 (72)
72 1wcw_A Uroporphyrinogen III sy 23.4 88 0.003 22.0 3.9 34 16-55 1-34 (261)
73 2k2w_A Recombination and DNA r 22.8 1.4E+02 0.0046 19.8 4.4 35 17-57 10-44 (118)
74 3p94_A GDSL-like lipase; serin 21.2 1.7E+02 0.0059 18.8 5.6 24 9-35 103-126 (204)
No 1
>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}
Probab=99.96 E-value=1.7e-29 Score=205.42 Aligned_cols=102 Identities=20% Similarity=0.161 Sum_probs=98.3
Q ss_pred hHHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhC-CCeec
Q 033679 8 LIFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKG-GQVFG 86 (113)
Q Consensus 8 ~~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~-gi~IV 86 (113)
=|+.|||++|+++|+||+|||||++|.+.++++..++++++++||+++.+++++||||||.+.+|.|+++|+++ ||+||
T Consensus 340 Dv~~il~~~k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa~~~~t~K~~~A~~~g~IkIV 419 (442)
T 3ef1_A 340 NVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVV 419 (442)
T ss_dssp CHHHHHHHHHHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEECSCCCHHHHHHHHHSSSEEE
T ss_pred cHHHHHHHHhhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEeCCCCCHHHHHHHhcCCCEEE
Confidence 48899999999999999999999999988889999999999999999999999999999999999999999998 59999
Q ss_pred CcchHHHHHHhhCCCCCCceecc
Q 033679 87 GSTVDRGSQLFVARATRREVSCE 109 (113)
Q Consensus 87 ~p~WL~~c~~~w~r~dE~~y~~~ 109 (113)
+|+||++|..+|+|+||++|++.
T Consensus 420 s~~WL~dcl~~~krldE~~YlLy 442 (442)
T 3ef1_A 420 KLNWLTESLSQWKRLPESDYLLY 442 (442)
T ss_dssp EHHHHHHHHHHTSCCCGGGTBCC
T ss_pred eHHHHHHHHHcCCcCChhccccC
Confidence 99999999999999999999974
No 2
>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.4e-28 Score=196.37 Aligned_cols=101 Identities=20% Similarity=0.172 Sum_probs=97.5
Q ss_pred HHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhC-CCeecC
Q 033679 9 IFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKG-GQVFGG 87 (113)
Q Consensus 9 ~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~-gi~IV~ 87 (113)
++.||+++|+++|+||+|+|||.+|.+.++++..++++++++||+|+.+++++||||||.+.+|.|+++|++. ||+||+
T Consensus 271 v~~ii~~lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t~K~~~A~~~~~I~IV~ 350 (372)
T 3ef0_A 271 VGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKVVK 350 (372)
T ss_dssp HHHHHHHHHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCCHHHHHHHHSSSCCEEE
T ss_pred HHHHHHHHHhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCchHHHHHHhcCCCEEEc
Confidence 7899999999999999999999999887888999999999999999999999999999999999999999998 799999
Q ss_pred cchHHHHHHhhCCCCCCceecc
Q 033679 88 STVDRGSQLFVARATRREVSCE 109 (113)
Q Consensus 88 p~WL~~c~~~w~r~dE~~y~~~ 109 (113)
|+||++|..+|+|+||++|++.
T Consensus 351 ~~Wl~~c~~~~~~vdE~~Y~l~ 372 (372)
T 3ef0_A 351 LNWLTESLSQWKRLPESDYLLY 372 (372)
T ss_dssp HHHHHHHHHTTSCCCGGGGBCC
T ss_pred HHHHHHHHHhCCcCChhhceeC
Confidence 9999999999999999999873
No 3
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=99.94 E-value=8.8e-27 Score=156.02 Aligned_cols=94 Identities=14% Similarity=0.064 Sum_probs=83.3
Q ss_pred HhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEe---cCCCcHHHHHHHhCCCeecCcch
Q 033679 14 ENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVS---NKCSNEKVSLGSKGGQVFGGSTV 90 (113)
Q Consensus 14 ~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~---~~~~t~K~~~A~k~gi~IV~p~W 90 (113)
++...++|+||+|+|||.++ .++..+.++++++||++..+++++|||||+ ....+.|++.|++.|++||+|+|
T Consensus 9 ~~~~~~~l~g~~i~isg~~~----~~r~~l~~li~~~Gg~v~~~~s~~~THlI~~~~~~~~~~K~~~A~~~gi~IV~~~W 84 (107)
T 3l3e_A 9 KEEAPKPLHKVVVCVSKKLS----KKQSELNGIAASLGADYRRSFDETVTHFIYQGRPNDTNREYKSVKERGVHIVSEHW 84 (107)
T ss_dssp -----CTTTTCEEEECGGGG----GGHHHHHHHHHHTTCEEESSCCTTCCEEECCCCTTCCCHHHHHHHHTTCEEECHHH
T ss_pred cccccCCCCCeEEEEeCCCh----HhHHHHHHHHHHcCCEEeccccCCceEEEecCCCCCCCHHHHHHHHCCCeEecHHH
Confidence 34567899999999999986 578899999999999999999999999999 44568999999999999999999
Q ss_pred HHHHHHhhCCCCCCceeccCC
Q 033679 91 DRGSQLFVARATRREVSCEAN 111 (113)
Q Consensus 91 L~~c~~~w~r~dE~~y~~~~~ 111 (113)
|.+|..+++|+||++|++..+
T Consensus 85 l~~c~~~~~~l~e~~Y~~~~~ 105 (107)
T 3l3e_A 85 LLDCAQECKHLPESLYPHTYN 105 (107)
T ss_dssp HHHHHHHTSCCCGGGCCTTCC
T ss_pred HHHHHHhCCCCchhhCCCCCC
Confidence 999999999999999998654
No 4
>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*
Probab=99.92 E-value=4.8e-25 Score=149.13 Aligned_cols=97 Identities=12% Similarity=0.002 Sum_probs=85.1
Q ss_pred hhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHH
Q 033679 15 NGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 15 ~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
.+..++|+||+++|++.-+.+.......++.+++++||+++.+++++|||||+.+.++.|++.|++++++||+|+||++|
T Consensus 2 ~~~~p~f~g~vvyvd~~~~~g~~~~s~~l~~~l~~~GA~v~~~l~~~vTHvV~~~~~~~~~~~A~~~~i~iV~~~Wv~~C 81 (107)
T 3pa6_A 2 HMAAPILKDVVAYVEVWSSNGTENYSKTFTTQLVDMGAKVSKTFNKQVTHVIFKDGYQSTWDKAQKRGVKLVSVLWVEKC 81 (107)
T ss_dssp --CCCTTTTCEEEEEEBCTTSCCBCHHHHHHHHHHTTCEECSSCCTTCCEEEEESCCHHHHHHHHHHTCEEECHHHHHHH
T ss_pred CccccccCCEEEEEeccCCCChhhHHHHHHHHHHHcCCEEecccCCCccEEEEeCCCChHHHHHhcCCCEEECHHHHHHH
Confidence 35678999999999887533332344689999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCceeccCC
Q 033679 95 QLFVARATRREVSCEAN 111 (113)
Q Consensus 95 ~~~w~r~dE~~y~~~~~ 111 (113)
..+|+|+||++|++...
T Consensus 82 ~~~~~~vdE~~Y~i~~~ 98 (107)
T 3pa6_A 82 RTAGAHIDESLFPAANM 98 (107)
T ss_dssp HHHTSCCCGGGSBCCCT
T ss_pred HHhCccCChhcccCCCC
Confidence 99999999999998654
No 5
>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}
Probab=99.92 E-value=2.6e-26 Score=156.65 Aligned_cols=97 Identities=16% Similarity=0.040 Sum_probs=84.8
Q ss_pred HHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHH
Q 033679 13 TENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDR 92 (113)
Q Consensus 13 l~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~ 92 (113)
+..-|-++|.||+|+|||. + +.++..|+++++++||+++.++++++||||+.++.+.|++.|.+++|+||+++||+
T Consensus 14 ~~~~~~p~F~g~~Ic~sGf-~---~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl~ 89 (112)
T 3l46_A 14 LYFQGVPPFQDCILSFLGF-S---DEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWFW 89 (112)
T ss_dssp ----CCCTTTTCEECEESC-C---HHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHHH
T ss_pred ccccCCCccCCeEEEEeCC-C---HHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHHH
Confidence 4556778999999999995 4 25788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCceeccCCCC
Q 033679 93 GSQLFVARATRREVSCEANQT 113 (113)
Q Consensus 93 ~c~~~w~r~dE~~y~~~~~~~ 113 (113)
+|.+++.++||+.|.++..+|
T Consensus 90 dsi~~g~~ldE~~Y~~~~~~~ 110 (112)
T 3l46_A 90 GSIQMDARAGETMYLYEKANT 110 (112)
T ss_dssp HHHHHTSCCCGGGSBCCC---
T ss_pred HHHHcCCccChhhceeccCCC
Confidence 999999999999999976543
No 6
>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.92 E-value=2.4e-26 Score=155.12 Aligned_cols=94 Identities=16% Similarity=0.097 Sum_probs=86.0
Q ss_pred hhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHH
Q 033679 15 NGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 15 ~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
+.|-++|+||+|+|||. + ..++..++++++++||++...+++++||||+.++.+.|++.|.+++++||+++||++|
T Consensus 7 ~~~~~~F~g~~i~~sg~-~---~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~ds 82 (109)
T 2cou_A 7 GFKVPPFQDCILSFLGF-S---DEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGS 82 (109)
T ss_dssp SSCCCTTTTCBEEEESS-C---HHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHH
T ss_pred cccCCcCCCeEEEecCC-C---HHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHH
Confidence 34678999999999995 3 2478899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCceeccCCC
Q 033679 95 QLFVARATRREVSCEANQ 112 (113)
Q Consensus 95 ~~~w~r~dE~~y~~~~~~ 112 (113)
..+++++||++|.+...+
T Consensus 83 i~~g~~ldE~~Y~~~~~~ 100 (109)
T 2cou_A 83 IQMDARAGETMYLYEKAN 100 (109)
T ss_dssp HHTTSCCCGGGTBCCCCC
T ss_pred HHcCCcCChhccCCCCCC
Confidence 999999999999997644
No 7
>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.91 E-value=1.2e-24 Score=150.44 Aligned_cols=91 Identities=15% Similarity=0.056 Sum_probs=85.2
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHHH
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQL 96 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~~ 96 (113)
..++|+||+|+|||.++ +++..|.++++.+||++..+++++|||||+.+..+.|++.|++.||+||+++||++|..
T Consensus 19 ~~~~f~g~~i~itG~~~----~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~ 94 (129)
T 2d8m_A 19 LGKILQGVVVVLSGFQN----PFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHR 94 (129)
T ss_dssp HTTTSTTEEEEEESCCT----THHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHH
T ss_pred ccccCCCeEEEEeCCCc----HHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHH
Confidence 45689999999999863 57889999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCCceeccCC
Q 033679 97 FVARATRREVSCEAN 111 (113)
Q Consensus 97 ~w~r~dE~~y~~~~~ 111 (113)
+|+++||++|++...
T Consensus 95 ~~~~l~e~~Y~l~~~ 109 (129)
T 2d8m_A 95 MRRRLPSQRYLMAGP 109 (129)
T ss_dssp TTSCCCGGGGBCSSS
T ss_pred hCCcCChHhcccCCC
Confidence 999999999998654
No 8
>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}
Probab=99.89 E-value=4.1e-23 Score=133.32 Aligned_cols=87 Identities=14% Similarity=0.025 Sum_probs=75.9
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC--CCccEEEecCCCcHHHHHHHhCCCeecCcchHHHH
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD--PSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~--~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
+.++|+||+|+|||.. .+++..+.++++++||++...++ +++||||+.++.+.|+..+ .|++||+|+||++|
T Consensus 4 ~~~~f~g~~~~i~g~~----~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~--~~~~iV~~~Wi~dc 77 (92)
T 4id3_A 4 SSKIFKNCVIYINGYT----KPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEF--ANYKVVSPDWIVDS 77 (92)
T ss_dssp --CTTTTCEEEECSCC----SSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHT--TTSCEECTHHHHHH
T ss_pred cccccCCEEEEEeCCC----CcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHc--CCCCEEcccHHHHH
Confidence 4689999999999953 24578999999999999999999 8999999999888885433 58999999999999
Q ss_pred HHhhCCCCCCceecc
Q 033679 95 QLFVARATRREVSCE 109 (113)
Q Consensus 95 ~~~w~r~dE~~y~~~ 109 (113)
..+++++||++|.+.
T Consensus 78 i~~~~~l~e~~Y~l~ 92 (92)
T 4id3_A 78 VKEARLLPWQNYSLT 92 (92)
T ss_dssp HHHTSCCCGGGGBCC
T ss_pred HHcCCcCChhhcccC
Confidence 999999999999873
No 9
>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}
Probab=99.86 E-value=6.7e-22 Score=129.53 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=78.6
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC-CCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHH
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD-PSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQ 95 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~-~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~ 95 (113)
..++|+||+|++||.- .+++..|.++++++||++..+++ +.+||+|+.+..+.|++.+. +++||+|+||.||.
T Consensus 9 ~~~lF~g~~~~isg~~----~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~~--~~~iV~p~Wl~dci 82 (97)
T 2ebw_A 9 SSTIFSGVAIYVNGYT----DPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKELK--GEKVIRPEWIVESI 82 (97)
T ss_dssp CCCTTTTCEEEECSSC----SSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHTS--SSCCBCTHHHHHHH
T ss_pred CCCCCCCeEEEEeCCC----cccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHhc--CCCEeChHHHHHHH
Confidence 4678999999999973 34678999999999999998887 68999999999899998775 89999999999999
Q ss_pred HhhCCCCCCceecc
Q 033679 96 LFVARATRREVSCE 109 (113)
Q Consensus 96 ~~w~r~dE~~y~~~ 109 (113)
.+++++||++|.+.
T Consensus 83 ~~~~~l~~~~Y~l~ 96 (97)
T 2ebw_A 83 KAGRLLSYIPYQLY 96 (97)
T ss_dssp HHTSCCCSGGGBSC
T ss_pred HcCCccCchHcEec
Confidence 99999999999875
No 10
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.85 E-value=9e-22 Score=152.54 Aligned_cols=95 Identities=11% Similarity=0.008 Sum_probs=86.6
Q ss_pred HhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC-CCccEEEecCCCcHHHHHHHhCCCeecCcchHH
Q 033679 14 ENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD-PSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDR 92 (113)
Q Consensus 14 ~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~-~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~ 92 (113)
+.-+.++|+||+|+|||..+ +++..+..+++.+||++..+++ +++||||+.++.+.|++.|+++||+||+|+||.
T Consensus 193 ~~~~~~~f~g~~i~~tG~~~----~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~ 268 (298)
T 3olc_X 193 EDFKCPIFLGCIICVTGLCG----LDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFF 268 (298)
T ss_dssp GGGBCCTTTTCEEEECSCCH----HHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHH
T ss_pred ccccccccCCeEEEEeCCCC----ccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHH
Confidence 34567889999999999754 4788999999999999999999 899999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCceeccCCC
Q 033679 93 GSQLFVARATRREVSCEANQ 112 (113)
Q Consensus 93 ~c~~~w~r~dE~~y~~~~~~ 112 (113)
+|..+|+++||++|.+....
T Consensus 269 dsi~~g~~lde~~Y~l~~~~ 288 (298)
T 3olc_X 269 DSIEKGFCQDESIYKTEPRP 288 (298)
T ss_dssp HHHHHTSCCCGGGSBSCC--
T ss_pred HHHHCCCCCCchhcCCCCCc
Confidence 99999999999999997653
No 11
>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5
Probab=99.83 E-value=9.9e-21 Score=131.13 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=80.7
Q ss_pred HHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHh---CCCeecCc
Q 033679 12 CTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSK---GGQVFGGS 88 (113)
Q Consensus 12 il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k---~gi~IV~p 88 (113)
.+++.+..+|+||+|+|+|.- ..++..|.++++.+||++...+++.+||+|+.++ +.+++.+.+ .+++||+|
T Consensus 32 ~~~~~~~~lF~g~~i~i~G~~----~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~-~~~~~~~~~~~~~~~~iV~~ 106 (132)
T 1wf6_A 32 SAFQAPEDLLDGCRIYLCGFS----GRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDY-DDELKQFWNKSAHRPHVVGA 106 (132)
T ss_dssp GGCCCCTTTTTTCEEEEESCC----SHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSC-CSHHHHHHHHSCCCCCEEEH
T ss_pred ccccccccccCCEEEEEECCC----hHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCc-hHHHHHHHHhhCCCCeEech
Confidence 457788999999999999972 3567899999999999999999999999999875 445555543 36999999
Q ss_pred chHHHHHHhhCCCCCCceeccC
Q 033679 89 TVDRGSQLFVARATRREVSCEA 110 (113)
Q Consensus 89 ~WL~~c~~~w~r~dE~~y~~~~ 110 (113)
+||++|...++++||++|++..
T Consensus 107 ~Wv~dsi~~~~ll~e~~Y~~~~ 128 (132)
T 1wf6_A 107 KWLLECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp HHHHHHHHHSSCCCSGGGBCCC
T ss_pred HHHHHHHHcCCcCCHhhccCCC
Confidence 9999999999999999998764
No 12
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=99.82 E-value=2.9e-20 Score=125.24 Aligned_cols=89 Identities=9% Similarity=0.039 Sum_probs=82.2
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhC--CCeecCcchHHHHHH
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKG--GQVFGGSTVDRGSQL 96 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~--gi~IV~p~WL~~c~~ 96 (113)
.+|+||++.|||.+| +.++..++++..++||+++..++++|||+|+.++.+.|++.|++. ++.+|+|+||++|..
T Consensus 6 d~F~g~~f~l~~~~p---~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~ 82 (104)
T 3pc6_A 6 DFFEGKHFFLYGEFP---GDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNE 82 (104)
T ss_dssp CTTTTCEEEEESCCS---TTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHH
T ss_pred hhhCCeEEEEcCCCc---HHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHh
Confidence 579999999999987 357789999999999999999999999999999999999999864 699999999999999
Q ss_pred hhCCCCCCceeccC
Q 033679 97 FVARATRREVSCEA 110 (113)
Q Consensus 97 ~w~r~dE~~y~~~~ 110 (113)
+++++++++|.+..
T Consensus 83 ~~klvp~~~y~~~~ 96 (104)
T 3pc6_A 83 KQKLLPHQLYGVVP 96 (104)
T ss_dssp HTSCCCGGGGBCCC
T ss_pred cCccCCcccceecc
Confidence 99999999998753
No 13
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.81 E-value=3.3e-20 Score=136.71 Aligned_cols=90 Identities=17% Similarity=0.107 Sum_probs=81.3
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC------CcHHHHHHHhCCCeecCcch
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC------SNEKVSLGSKGGQVFGGSTV 90 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~------~t~K~~~A~k~gi~IV~p~W 90 (113)
|+..+++++|+|||+.+ .++..+.++++.+||++..++++.|||||+... .|.|+..|+..|++||+|+|
T Consensus 1 ~~~~~~~~~i~~sg~~~----~~~~~l~~~~~~~G~~~~~~~~~~~THlI~~~~~~~~~~rt~K~~~a~~~g~~IV~~~W 76 (229)
T 1l0b_A 1 KERAERDISMVVSGLTP----KEVMIVQKFAEKYRLALTDVITEETTHVIIKTDAEFVCERTLKYFLGIAGGKWIVSYSW 76 (229)
T ss_dssp --CCCCCCEEEEESCCH----HHHHHHHHHHHHTTCEECSSCCSSCCEEEECBCTTSEECCCHHHHHHHHTTCEEEETHH
T ss_pred CCCCCCCeEEEEcCCCH----HHHHHHHHHHHHcCCEEeCCcCCCCCEEEEcCCccccccccHHHHHHHHCCCcEecHHH
Confidence 56789999999999854 356789999999999999999999999999975 69999999999999999999
Q ss_pred HHHHHHhhCCCCCCceeccC
Q 033679 91 DRGSQLFVARATRREVSCEA 110 (113)
Q Consensus 91 L~~c~~~w~r~dE~~y~~~~ 110 (113)
|.+|...++++||++|.+..
T Consensus 77 l~~~~~~~~~~~e~~y~~~~ 96 (229)
T 1l0b_A 77 VIKSIQERKLLSVHEFEVKG 96 (229)
T ss_dssp HHHHHTTTSCCCSGGGBCCE
T ss_pred HHHHHHCCCcCChHHeEecc
Confidence 99999999999999998863
No 14
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=99.79 E-value=2.6e-19 Score=131.08 Aligned_cols=85 Identities=20% Similarity=0.034 Sum_probs=78.2
Q ss_pred CCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecC---CCcHHHHHHHhCCCeecCcchHHHHHHhh
Q 033679 22 KGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNK---CSNEKVSLGSKGGQVFGGSTVDRGSQLFV 98 (113)
Q Consensus 22 ~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~---~~t~K~~~A~k~gi~IV~p~WL~~c~~~w 98 (113)
.|++|++||+.+ .++..+.++++.|||++..+++++|||||+.+ ..|.|+..|+..|++||+|+||.+|...+
T Consensus 1 ~~~vi~~sg~~~----~~~~~l~~~~~~~G~~~~~~~~~~~THlV~~~~~~~rt~K~l~a~~~g~~IV~~~Wl~~c~~~~ 76 (210)
T 2nte_A 1 GPLVLIGSGLSS----EQQKMLSELAVILKAKKYTEFDSTVTHVVVPGDAVQSTLKCMLGILNGCWILKFEWVKACLRRK 76 (210)
T ss_dssp CCCEEEESSCCH----HHHHHHHHHHHHTTCEEESSCCTTCCEEEESSSSCCCSHHHHHHHHTTCEEEETHHHHHHHHHT
T ss_pred CCEEEEECCCCH----HHHHHHHHHHHHcCCEEeCCCCCCCeEEEEcCCCcchHHHHHHHHhcCCEEecHHHHHHHHHcC
Confidence 378999999853 46678999999999999999999999999987 57999999999999999999999999999
Q ss_pred CCCCCCceeccC
Q 033679 99 ARATRREVSCEA 110 (113)
Q Consensus 99 ~r~dE~~y~~~~ 110 (113)
+++||++|++..
T Consensus 77 ~~~~e~~y~~~~ 88 (210)
T 2nte_A 77 VCEQEEKYEIPE 88 (210)
T ss_dssp SCCCGGGTBCTT
T ss_pred CcCChhhccCCC
Confidence 999999999863
No 15
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.78 E-value=3.1e-19 Score=129.74 Aligned_cols=84 Identities=19% Similarity=0.115 Sum_probs=76.9
Q ss_pred CCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC------CcHHHHHHHhCCCeecCcchHHHHH
Q 033679 22 KGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC------SNEKVSLGSKGGQVFGGSTVDRGSQ 95 (113)
Q Consensus 22 ~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~------~t~K~~~A~k~gi~IV~p~WL~~c~ 95 (113)
+|++|++||+.+ .++..+.++++.+||++..+++++|||||+.+. .|.|+..|+..|++||+|+||.+|.
T Consensus 3 ~~~~~~~sg~~~----~~~~~l~~~~~~~G~~~~~~~~~~~THli~~~~~~~~~~rt~k~~~a~~~g~~IV~~~Wl~~~~ 78 (214)
T 1t15_A 3 KRMSMVVSGLTP----EEFMLVYKFARKHHITLTNLITEETTHVVMKTDAEFVCERTLKYFLGIAGGKWVVSYFWVTQSI 78 (214)
T ss_dssp -CCEEEEESCCH----HHHHHHHHHHHHHTCEECSSCCTTCCEEEECBCTTSEECCBHHHHHHHHTTCEEEETHHHHHHH
T ss_pred CcEEEEECCCCH----HHHHHHHHHHHHhCCEEeCccCCCCcEEEEeCCcccchhhhHHHHHHHhcCCEEeCHHHHHHHH
Confidence 589999999843 366789999999999999999999999999975 4999999999999999999999999
Q ss_pred HhhCCCCCCceecc
Q 033679 96 LFVARATRREVSCE 109 (113)
Q Consensus 96 ~~w~r~dE~~y~~~ 109 (113)
..++++||++|.+.
T Consensus 79 ~~~~~~~e~~y~~~ 92 (214)
T 1t15_A 79 KERKMLNEHDFEVR 92 (214)
T ss_dssp HTTSCCCGGGGBCC
T ss_pred HCCCcCChHHeEee
Confidence 99999999999886
No 16
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=99.77 E-value=3.5e-19 Score=132.62 Aligned_cols=91 Identities=10% Similarity=-0.036 Sum_probs=81.3
Q ss_pred hhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcHHHHHHHhCCCeecCcchHHH
Q 033679 15 NGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGSTVDRG 93 (113)
Q Consensus 15 ~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p~WL~~ 93 (113)
-+|-.++.|++|+|||.-+ .++..+.++++.|||.+.++. +++||||+.+. +|.|+..|+..|++||+|+||.+
T Consensus 8 ~~~~~~~~~~~i~~SG~~~----~~~~~l~~~i~~lGg~v~~~~-~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~ 82 (219)
T 3sqd_A 8 HMKLTPELTPFVLFTGFEP----VQVQQYIKKLYILGGEVAESA-QKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEE 82 (219)
T ss_dssp -CCCCGGGCCEEEECSCCH----HHHHHHHHHHHHTTCEECSSG-GGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHH
T ss_pred ccccCCCCCeEEEEeCCCh----HHHHHHHHHHHHCCCEEeCCC-CCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHH
Confidence 3567889999999999744 355688999999999999986 89999999876 68999999999999999999999
Q ss_pred HHHhhCCCCCCceeccC
Q 033679 94 SQLFVARATRREVSCEA 110 (113)
Q Consensus 94 c~~~w~r~dE~~y~~~~ 110 (113)
|...++.+||++|.+..
T Consensus 83 c~~~~~~l~e~~y~l~d 99 (219)
T 3sqd_A 83 CFRCQKFIDEQNYILRD 99 (219)
T ss_dssp HHHHTSCCCSGGGBCCC
T ss_pred HHHcCCCCChHhccCCC
Confidence 99999999999999863
No 17
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.76 E-value=9.7e-19 Score=128.64 Aligned_cols=86 Identities=13% Similarity=-0.009 Sum_probs=72.6
Q ss_pred hhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcHHHHHHHhCCCeecCcchHHHH
Q 033679 16 GQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 16 ~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
-+++.++|++|+|||..+ ..+.++++.|||.+..++++ +||||+.+. .|.|+..|+..|++||+|+||.+|
T Consensus 5 ~~~~~~~~~~v~~sG~~~-------~~~~~~i~~lGg~~~~~~~~-~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~ 76 (209)
T 2etx_A 5 KLNQESTAPKVLFTGVVD-------ARGERAVLALGGSLAGSAAE-ASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQS 76 (209)
T ss_dssp -------CCEEEECSSCC-------HHHHHHHHHTTCEECSSTTT-CSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHH
T ss_pred cccccCCCcEEEEeCCCc-------HHHHHHHHHCCCEEeCCCCC-ceEEEECCCCCCHHHHHHHhcCCccccHHHHHHH
Confidence 467899999999999853 24578999999999999985 999999876 699999999999999999999999
Q ss_pred HHhhCCCCCCceecc
Q 033679 95 QLFVARATRREVSCE 109 (113)
Q Consensus 95 ~~~w~r~dE~~y~~~ 109 (113)
...++.+||++|.+.
T Consensus 77 ~~~~~~l~e~~y~~~ 91 (209)
T 2etx_A 77 RKAGFFLPPDEYVVT 91 (209)
T ss_dssp HHHTSCCCSGGGBCC
T ss_pred HHcCCCCChhhcccc
Confidence 999999999999985
No 18
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=99.71 E-value=2.1e-17 Score=124.24 Aligned_cols=88 Identities=17% Similarity=0.134 Sum_probs=77.6
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEe--eeCCCccEEEecCC-CcHHHHHHHhCCCeecCcchHHHHH
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSI--ELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGSTVDRGSQ 95 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~--~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p~WL~~c~ 95 (113)
++.++.+|+|||+.+ .++..+.++++.|||.+.. +++++|||||+.++ .|.|+..|+..|++||+|+||.+|.
T Consensus 5 ~~~~~~~~~~Sg~~~----~~~~~l~~~i~~LGg~~~~~~~~~~~~THlV~~~~~RT~K~l~aia~G~wIvs~~wl~~s~ 80 (235)
T 3al2_A 5 SLKKQYIFQLSSLNP----QERIDYCHLIEKLGGLVIEKQCFDPTCTHIVVGHPLRNEKYLASVAAGKWVLHRSYLEACR 80 (235)
T ss_dssp ---CCCEEEEESCCH----HHHHHHHHHHHHTTCEECCSSSCCTTCCEEEESSCCCSHHHHHHHHTTCEEECTHHHHHHH
T ss_pred cCCCCEEEEEcCCCH----HHHHHHHHHHHHcCCEEeccCCCCCCCcEEEECCCCCCHHHHHHHHcCCcCccHHHHHHHH
Confidence 456899999999743 4667899999999999976 58999999999997 4999999999999999999999999
Q ss_pred HhhCCCCCCceeccC
Q 033679 96 LFVARATRREVSCEA 110 (113)
Q Consensus 96 ~~w~r~dE~~y~~~~ 110 (113)
+..+.+||++|++..
T Consensus 81 ~~g~~l~E~~ye~~~ 95 (235)
T 3al2_A 81 TAGHFVQEEDYEWGS 95 (235)
T ss_dssp HHTSCCCSGGGBTTS
T ss_pred HcCCCCChhceeecC
Confidence 999999999999864
No 19
>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*
Probab=99.70 E-value=2.8e-17 Score=127.26 Aligned_cols=85 Identities=12% Similarity=0.056 Sum_probs=77.5
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHHHh
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
+.+|+|++|+|||+.| .++..+..+++.+||++..+++++|||||+.+.+|.||+.|.+.|++||+|+||.+|...
T Consensus 103 ~~~l~g~~~~~tG~~~----~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~ 178 (298)
T 3olc_X 103 NMVMSDVTISCTSLEK----EKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEK 178 (298)
T ss_dssp CCTTTTCEEEEESCCH----HHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred ccccCCeEEEeCCCcH----HhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHc
Confidence 4579999999999965 377899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCCce
Q 033679 98 VARATRREV 106 (113)
Q Consensus 98 w~r~dE~~y 106 (113)
.+..+...|
T Consensus 179 ~~~~~~~~~ 187 (298)
T 3olc_X 179 SQEKKITRY 187 (298)
T ss_dssp HHTTCCSSG
T ss_pred CCcCCcccc
Confidence 887766443
No 20
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.68 E-value=9.3e-17 Score=117.79 Aligned_cols=86 Identities=17% Similarity=0.081 Sum_probs=76.3
Q ss_pred CCcEEEEccccCCCCCccchHHHHHHHhcCC-EEEeeeCCCccEEEecCC-CcHHHHHHHhCCCeecCcchHHHHHHhhC
Q 033679 22 KGCKLVFSHAFPSKFPAHIHYLWKVVEQLGA-TCSIELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGSTVDRGSQLFVA 99 (113)
Q Consensus 22 ~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA-~~~~~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p~WL~~c~~~w~ 99 (113)
..-+|++||+-+ .++..+.++++.||| .+..++++.+||||+.++ .|.|+..|+..|++||+|+||.+|.+..+
T Consensus 10 ~~~~~~~sgl~~----~~~~~l~~~i~~lgG~~~~~~~~~~~THlv~~~~~rT~K~l~ai~~g~~Iv~~~Wv~~~~~~g~ 85 (199)
T 3u3z_A 10 PTRTLVMTSMPS----EKQNVVIQVVDKLKGFSIAPDVCETTTHVLSGKPLRTLNVLLGIARGCWVLSYDWVLWSLELGH 85 (199)
T ss_dssp CCCEEEEESCCH----HHHHHHHHHHHHHCSCEEESSCCTTEEEEEESSCCCBHHHHHHHHTTCEEEETHHHHHHHHHTS
T ss_pred CCeEEEEcCCCH----HHHHHHHHHHHHcCCcEEecCCCCCCeEEEECCCCCCHHHHHHHHCCCcEEeHHHHHHHhhCCC
Confidence 366899999832 356678999999976 788999999999999985 79999999999999999999999999999
Q ss_pred CCCCCceeccCC
Q 033679 100 RATRREVSCEAN 111 (113)
Q Consensus 100 r~dE~~y~~~~~ 111 (113)
++||++|++...
T Consensus 86 ~l~e~~y~~~~~ 97 (199)
T 3u3z_A 86 WISEEPFELSHH 97 (199)
T ss_dssp CCCSGGGBCTTT
T ss_pred CCChhhccccCC
Confidence 999999998754
No 21
>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-17 Score=110.88 Aligned_cols=92 Identities=15% Similarity=0.039 Sum_probs=73.5
Q ss_pred hhhhcCCCCcEEEEccccCCCCCccchHHHH-HHHhcCCEEEeeeCCCccEEEecCCCcHHHHHH-Hh-----CCCeecC
Q 033679 15 NGQREVLKGCKLVFSHAFPSKFPAHIHYLWK-VVEQLGATCSIELDPSVTHVVSNKCSNEKVSLG-SK-----GGQVFGG 87 (113)
Q Consensus 15 ~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~-~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A-~k-----~gi~IV~ 87 (113)
+.+..+|+||++.| +|.+....+..++. .|..+||++++++++.|||+|+.+..+.+.... ++ .+++||+
T Consensus 6 ~~~~~~F~g~~v~~---~p~~~~~~r~~i~~~~a~~~Ga~v~~~~~~~vTHVVvd~~~s~~~~l~~l~~~~l~~~~~iV~ 82 (106)
T 2jw5_A 6 EEAEEWLSSLRAHV---VRTGIGRARAELFEKQIVQHGGQLCPAQGPGVTHIVVDEGMDYERALRLLRLPQLPPGAQLVK 82 (106)
T ss_dssp CCGGGCGGGSCCCB---CTTTCCSSSTTHHHHHHHHTTCCCCSTTCTTCCEEEECSSSCHHHHHHHTTCSSCCSSCEEEE
T ss_pred ccCcCEeCCeEEEE---EecCCchHHHHHHHHHHHHcCCEEeeccCCCccEEEEcCCCCHHHHHHHHhhcccCCCcEEec
Confidence 46788999999997 56665445545554 899999999999999999999986555544322 22 2479999
Q ss_pred cchHHHHHHhhCCCCCCceecc
Q 033679 88 STVDRGSQLFVARATRREVSCE 109 (113)
Q Consensus 88 p~WL~~c~~~w~r~dE~~y~~~ 109 (113)
++|+.+|...|+.+||+.|.+.
T Consensus 83 ~~Wv~dci~~~~llde~~y~~~ 104 (106)
T 2jw5_A 83 SAWLSLCLQERRLVDVAGFSIF 104 (106)
T ss_dssp HHHHHHHHHTCSCCCGGGTBCS
T ss_pred CchHHHHHhcCcccCccccccc
Confidence 9999999999999999999875
No 22
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=99.64 E-value=1.8e-16 Score=118.32 Aligned_cols=83 Identities=8% Similarity=-0.022 Sum_probs=72.2
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcHHHHHHHhCCCeecCcchHHHHHHh
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
+.-++.+|+|||.-|.. ..++++.|||.+.++++ .+||||+.+. .|.|+..|+..|++||+|+||.+|...
T Consensus 4 ~~~~~~~v~fSG~~~~~-------~~~~i~~lGg~v~~~~~-~~THlV~~~~~RT~K~l~Aia~g~~IVs~~Wl~~~~~~ 75 (220)
T 3l41_A 4 KASKRVYITFTGYDKKP-------SIDNLKKLDMSITSNPS-KCTHLIAPRILRTSKFLCSIPYGPCVVTMDWINSCLKT 75 (220)
T ss_dssp ---CCEEEEECSCSSCC-------CCGGGGGGTEEECSCTT-TCSEEECSSCCCBHHHHHHGGGCCEEECHHHHHHHHHH
T ss_pred cccceEEEEEeccCCCC-------CcchHhhcceeeccCch-hhhhhhhhhHhhhcceeecCCCCCeEEEhHHHHhhhhh
Confidence 34578999999996642 16778999999999986 5999999977 699999999999999999999999999
Q ss_pred hCCCCCCceecc
Q 033679 98 VARATRREVSCE 109 (113)
Q Consensus 98 w~r~dE~~y~~~ 109 (113)
++.+||++|++.
T Consensus 76 ~~~l~e~~y~l~ 87 (220)
T 3l41_A 76 HEIVDEEPYLLN 87 (220)
T ss_dssp TSCCCSGGGBCC
T ss_pred hhccccCccccC
Confidence 999999999985
No 23
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=99.59 E-value=2.6e-15 Score=114.04 Aligned_cols=94 Identities=13% Similarity=0.089 Sum_probs=81.5
Q ss_pred hcCCCCcEEEEccccCCCC-------------------------CccchHHHHHHHhcCCEEEeeeCCC------ccEEE
Q 033679 18 REVLKGCKLVFSHAFPSKF-------------------------PAHIHYLWKVVEQLGATCSIELDPS------VTHVV 66 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~-------------------------~~~~~~l~~~a~~lGA~~~~~l~~~------vTHlV 66 (113)
+.+|.||.+++|+..+.+. ..++..|.++++.+||++..++++. +||||
T Consensus 13 ~~iF~g~~F~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~I~~~GG~v~~~~~~~~~~~~~~t~LI 92 (259)
T 1kzy_C 13 KTLFLGYAFLLTMATTSDKLASRSKLPDGPTGSSEEEEEFLEIPPFNKQYTESQLRAGAGYILEDFNEAQCNTAYQCLLI 92 (259)
T ss_dssp TTTTTTEEEEECCCC---------------------------CCCCCHHHHHHHHHTTTCEECSSCCTTTTTTTCEEEEE
T ss_pred CcCcCCcEEEEEcccccccccccccccccccccccccccccccCcccHHHHHHHHHHCCCEEecCccccccccCCCeEEE
Confidence 6789999999999976421 1355799999999999999999876 79999
Q ss_pred ecC-CCcHHHHHHHhCCCeecCcchHHHHHHhhCCCCCCceeccCC
Q 033679 67 SNK-CSNEKVSLGSKGGQVFGGSTVDRGSQLFVARATRREVSCEAN 111 (113)
Q Consensus 67 ~~~-~~t~K~~~A~k~gi~IV~p~WL~~c~~~w~r~dE~~y~~~~~ 111 (113)
+.. ..|.|+.+|+..|++||+++||.+|....+.+|+++|+++.+
T Consensus 93 a~~~~rt~K~l~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~l~~g 138 (259)
T 1kzy_C 93 ADQHCRTRKYFLCLASGIPCVSHVWVHDSCHANQLQNYRNYLLPAG 138 (259)
T ss_dssp ESSCCCSHHHHHHHHHTCCEEETHHHHHHHHHTSCCCGGGSBCCCE
T ss_pred cCCCCCcHHHHHHHhcCCCCccHHHHHHHHHcCCcCCHHHccCCCC
Confidence 987 479999999999999999999999999999999999999753
No 24
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=99.56 E-value=7.6e-15 Score=110.51 Aligned_cols=92 Identities=12% Similarity=-0.013 Sum_probs=77.6
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEee-----eC--C-------------------CccEEEecCC-C
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIE-----LD--P-------------------SVTHVVSNKC-S 71 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~-----l~--~-------------------~vTHlV~~~~-~ 71 (113)
.+|+||.+++||.- .....++..|.++++++||++..+ ++ . ..||||+... .
T Consensus 1 ~lF~g~~F~ls~~~-~~~~~~k~~L~~~I~~~GG~v~~~g~~~lf~~~~~~~~~~~~~~k~~~~~~~~~~t~lia~~~~r 79 (241)
T 2vxb_A 1 LIFDDCVFAFSGPV-HEDAYDRSALETVVQDHGGLVLDTGLRPLFNDPFKSKQKKLRHLKPQKRSKSWNQAFVVSDTFSR 79 (241)
T ss_dssp CTTTTEEEEECCCS-STTSSCHHHHHHHHHHTTCEECTTCSGGGBCCSCC----CCCSCCBCGGGGGCSEEEEECSSCCC
T ss_pred CCCCCcEEEEecCC-CCchhhHHHHHHHHHHCCCEEecCcchhhccCccccccccccccccccccccccceEEEcCCCCC
Confidence 47999999999982 112346689999999999999887 32 1 2499999976 4
Q ss_pred cHHHHHHHhCCCeecCcchHHHHHHhhCCCCCCceeccCC
Q 033679 72 NEKVSLGSKGGQVFGGSTVDRGSQLFVARATRREVSCEAN 111 (113)
Q Consensus 72 t~K~~~A~k~gi~IV~p~WL~~c~~~w~r~dE~~y~~~~~ 111 (113)
|.||.+|+..|++||+|+||.+|....+.+|+++|+++.+
T Consensus 80 t~K~~~ala~gipiV~~~Wi~dc~~~~~~~~~~~ylL~~~ 119 (241)
T 2vxb_A 80 KVKYLEALAFNIPCVHPQFIKQCLKMNRVVDFSPYLLASG 119 (241)
T ss_dssp CHHHHHHHHHTCCEECTHHHHHHHHHTSCCCSGGGBBEEE
T ss_pred cHHHHHHHHcCCCEecHHHHHHHHHcCCcCChhhccCCCC
Confidence 9999999999999999999999999999999999998643
No 25
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.54 E-value=1.9e-14 Score=109.35 Aligned_cols=91 Identities=8% Similarity=-0.080 Sum_probs=76.5
Q ss_pred HHhhhhcCCCCcEEEE-ccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCC-CeecCcch
Q 033679 13 TENGQREVLKGCKLVF-SHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGG-QVFGGSTV 90 (113)
Q Consensus 13 l~~~k~~vL~Gc~I~f-Sg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~g-i~IV~p~W 90 (113)
|++.+.++|+|+.|++ ||. ..+++..|.+++.++||++..+.++.+||+|+.+. |.|++.+.+.| ++||+|+|
T Consensus 3 ~~~~~s~lF~G~~f~V~sg~----~~~~k~~L~~lI~~~GG~v~~n~~~~t~~iIa~~~-~~k~~~~~~~g~~~IV~p~W 77 (263)
T 3ii6_X 3 MGSKISNIFEDVEFCVMSGT----DSQPKPDLENRIAEFGGYIVQNPGPDTYCVIAGSE-NIRVKNIILSNKHDVVKPAW 77 (263)
T ss_dssp ---CCCCTTTTCEEEECCCC------CCHHHHHHHHHHTTCEECSSCCTTEEEEECSSC-CHHHHHHHHSCSCCEECHHH
T ss_pred CCCcCcccCCCeEEEEEcCC----CCCCHHHHHHHHHHcCCEEEecCCCCEEEEEeCCC-CHHHHHHHhcCCCCEeehHH
Confidence 6788899999999986 663 34678899999999999999999988888787764 59999999987 99999999
Q ss_pred HHHHHHhhCCCCCCceec
Q 033679 91 DRGSQLFVARATRREVSC 108 (113)
Q Consensus 91 L~~c~~~w~r~dE~~y~~ 108 (113)
|.+|..+.+.+|-++|.+
T Consensus 78 v~Dci~~~~llp~~p~~~ 95 (263)
T 3ii6_X 78 LLECFKTKSFVPWQPRFM 95 (263)
T ss_dssp HHHHHHHTSCCCCCGGGE
T ss_pred HHHHHhcCCcCCCCHHHH
Confidence 999999999999888754
No 26
>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*
Probab=99.52 E-value=2.5e-14 Score=108.69 Aligned_cols=93 Identities=8% Similarity=-0.106 Sum_probs=69.1
Q ss_pred hhhcCCCCcEEEEccccCCCC-----Cccc-hHHHHHHHhcCCEEEeeeCCCccEEEecCCCc--HHHHHHHh---CCCe
Q 033679 16 GQREVLKGCKLVFSHAFPSKF-----PAHI-HYLWKVVEQLGATCSIELDPSVTHVVSNKCSN--EKVSLGSK---GGQV 84 (113)
Q Consensus 16 ~k~~vL~Gc~I~fSg~~p~~~-----~~~~-~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t--~K~~~A~k---~gi~ 84 (113)
.+..+|+||++.|.+.-..+. ...+ ..+..++.++||+++..+++.|||+|+.++.+ +..+...+ .+++
T Consensus 160 ~~~~lF~~~~vy~~~~~~~~~~~~~i~~~~l~~~~~~i~~~GG~v~~~l~~~vTHVVv~~~~~r~~~~~~~~~~~~~~~~ 239 (263)
T 3ii6_X 160 SPLSMFRRHTVYLDSYAVINDLSTKNEGTRLAIKALELRFHGAKVVSCLAEGVSHVIIGEDHSRVADFKAFRRTFKRKFK 239 (263)
T ss_dssp CGGGTTTTCEEEECCBSSTTCGGGBCCSSHHHHHHHHHHHTTCEEESSCCTTCCEEEECSCCTTHHHHHHHHHTCSSCCE
T ss_pred CcchhhCCeEEEEecccccCCcccccchhHHHHHHHHHHccCCEEecCCCCCceEEEECCCCccHHHHHHHHhhcCCCCE
Confidence 456789999999976422111 1111 23467899999999999999999999987543 12222222 2589
Q ss_pred ecCcchHHHHHHhhCCCCCCceec
Q 033679 85 FGGSTVDRGSQLFVARATRREVSC 108 (113)
Q Consensus 85 IV~p~WL~~c~~~w~r~dE~~y~~ 108 (113)
||+|+|+.+|...++++||++|.+
T Consensus 240 iV~~~Wv~dci~~~~~l~E~~Y~i 263 (263)
T 3ii6_X 240 ILKESWVTDSIDKCELQEENQYLI 263 (263)
T ss_dssp EEETHHHHHHHHTTSCCCGGGTBC
T ss_pred EeChHHHHHHHHcCCcCCHhhCCC
Confidence 999999999999999999999975
No 27
>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2
Probab=99.48 E-value=5.2e-14 Score=92.56 Aligned_cols=77 Identities=14% Similarity=0.059 Sum_probs=70.5
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHHHh
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
.++|.|.+|||+|.++. ++.++..+++.+||.+...++.+++|||+.+..+.|++.|.+.||+|++.+|+.++...
T Consensus 5 ~~~l~G~~~v~TG~l~~----~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~~ 80 (92)
T 1l7b_A 5 GEALKGLTFVITGELSR----PREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEA 80 (92)
T ss_dssp CCSSTTCEEECSTTTTS----CHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHH
T ss_pred CCCcCCcEEEEecCCCC----CHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHHh
Confidence 56899999999999863 67899999999999999999999999999998889999999999999999999988764
Q ss_pred h
Q 033679 98 V 98 (113)
Q Consensus 98 w 98 (113)
-
T Consensus 81 ~ 81 (92)
T 1l7b_A 81 R 81 (92)
T ss_dssp H
T ss_pred c
Confidence 3
No 28
>2k6g_A Replication factor C subunit 1; protein, BRCT, DNA binding, activator, alternative splicing, ATP-binding, DNA replication, DNA- binding; NMR {Homo sapiens} PDB: 2k7f_A
Probab=99.44 E-value=3.4e-13 Score=91.18 Aligned_cols=81 Identities=14% Similarity=0.081 Sum_probs=71.6
Q ss_pred HhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCc-HHHHHHHhCCCeecCcchHH
Q 033679 14 ENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSN-EKVSLGSKGGQVFGGSTVDR 92 (113)
Q Consensus 14 ~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t-~K~~~A~k~gi~IV~p~WL~ 92 (113)
|+-...+|.|.+|||+|.++. ..+.++..+++.+||.+...++.+++|||+.+..+ .|++.|.+.||+|++-+|+.
T Consensus 26 p~~~~~~l~G~~~v~TG~l~~---~~R~e~~~~i~~~Gg~v~~sVSkkTd~LV~G~~~g~sK~~kA~~lgI~Ii~E~~f~ 102 (109)
T 2k6g_A 26 PKGAENCLEGLIFVITGVLES---IERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGLL 102 (109)
T ss_dssp CCCCTTTTTTCEEEEESBCSS---CCHHHHHHHHHHTTCEEESSCCTTCCEEEECBCCCHHHHHHHHHHTCEEECHHHHH
T ss_pred CCCCCCCCCCCEEEEeeeCCC---CCHHHHHHHHHHcCCEeeCcccCCceEEEECCCCChHHHHHHHHcCCeEEeHHHHH
Confidence 444567899999999999853 35779999999999999999999999999997644 99999999999999999999
Q ss_pred HHHHh
Q 033679 93 GSQLF 97 (113)
Q Consensus 93 ~c~~~ 97 (113)
+....
T Consensus 103 ~ll~~ 107 (109)
T 2k6g_A 103 NLIRN 107 (109)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98754
No 29
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.39 E-value=8.8e-14 Score=104.65 Aligned_cols=91 Identities=5% Similarity=-0.151 Sum_probs=52.6
Q ss_pred hhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCc--HH----HHHHHh-C-------
Q 033679 16 GQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSN--EK----VSLGSK-G------- 81 (113)
Q Consensus 16 ~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t--~K----~~~A~k-~------- 81 (113)
.+..+|+||+++|+|..+.. ....+..+++++||+++.++++.+||+|+...++ .+ .+..+. +
T Consensus 156 ~~~~lF~g~~~yl~~~~~~~---~~~~l~~~i~~~GG~v~~~l~~~t~hVV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (264)
T 1z56_C 156 FPLFLFSNRIAYVPRRKIST---EDDIIEMKIKLFGGKITDQQSLCNLIIIPYTDPILRKDCMNEVHEKIKEQIKASDTI 232 (264)
T ss_dssp CCCC-----------------------CHHHHHHHTTSCCCCSSSCSEEECCCSSTTTHHHHSSHHHHTTTTTTTSSSSC
T ss_pred CchhhhCCeEEEEecCCCch---hHHHHHHHHHHcCCEEecccCCCEEEEEeCCCccchHHHHHHHHHHHHhhccccccc
Confidence 34668999999999975431 2235677899999999999998888888865332 22 332222 1
Q ss_pred -CC-eecCcchHHHHHHhhCCCCCCceecc
Q 033679 82 -GQ-VFGGSTVDRGSQLFVARATRREVSCE 109 (113)
Q Consensus 82 -gi-~IV~p~WL~~c~~~w~r~dE~~y~~~ 109 (113)
++ +||+|+||++|...++++||++|...
T Consensus 233 ~~~~~iV~~~Wv~dci~~~~ll~e~~Y~~~ 262 (264)
T 1z56_C 233 PKIARVVAPEWVDHSINENCQVPEEDFPVV 262 (264)
T ss_dssp CCCCEEECTHHHHHHHTTSCCCSSCCC---
T ss_pred CCCCEEecHHHHHHHHHcCCcCCHHHcCCC
Confidence 33 99999999999999999999999764
No 30
>2ebu_A Replication factor C subunit 1; A/B/A 3 layers, parallel beta-sheet, DNA replication, clamp loader, RFC1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=6.1e-13 Score=90.43 Aligned_cols=90 Identities=11% Similarity=0.075 Sum_probs=76.1
Q ss_pred HHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcHHHHHHHhCCCeecCcchH
Q 033679 13 TENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNEKVSLGSKGGQVFGGSTVD 91 (113)
Q Consensus 13 l~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~K~~~A~k~gi~IV~p~WL 91 (113)
+|.-...+|.|.+|||+|.++. ..+.++..+++.+||.+...++.+++|||+.+. ++.|++.|.+.||+|++-+|+
T Consensus 15 ~P~~~~~~l~G~~~v~TG~l~~---~~R~e~~~~i~~~Ggkv~~sVSkkTd~LV~G~~~g~sKl~KA~~lgI~IisE~~f 91 (112)
T 2ebu_A 15 IPKGAENCLEGLIFVITGVLES---IERDEAKSLIERYGGKVTGNVSKKTNYLVMGRDSGQSKSDKAAALGTKIIDEDGL 91 (112)
T ss_dssp CCCCCSSSSTTCEEEECSCCSS---SCHHHHHHHHHHTTCEECSSCCSSCCEEEECSSCCSHHHHHHHHHTCEEEEHHHH
T ss_pred CCCCCCCCcCCCEEEEeeeCCC---CCHHHHHHHHHHcCCEEeccccCCeeEEEecCCCChHHHHHHHHcCCeEEeHHHH
Confidence 4555667899999999999853 467899999999999999999999999999976 459999999999999999999
Q ss_pred HHHHHhhCCCCCCce
Q 033679 92 RGSQLFVARATRREV 106 (113)
Q Consensus 92 ~~c~~~w~r~dE~~y 106 (113)
.+.+.. ...+...|
T Consensus 92 ~~ll~~-~~~~~~~~ 105 (112)
T 2ebu_A 92 LNLIRT-MPGKKSKY 105 (112)
T ss_dssp HHHHHH-SCCCCCSS
T ss_pred HHHHhh-CCCccccc
Confidence 999874 33344444
No 31
>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=1e-12 Score=87.50 Aligned_cols=81 Identities=16% Similarity=0.194 Sum_probs=66.9
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEee-----------eCCCccEEEecCCCcHHHHHHHhCCCee
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIE-----------LDPSVTHVVSNKCSNEKVSLGSKGGQVF 85 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~-----------l~~~vTHlV~~~~~t~K~~~A~k~gi~I 85 (113)
...+|+||++++++-.| +..|..++.++||.+..+ .++++||+|+.++...+ ...+..+
T Consensus 9 ~~~LF~g~~F~i~~e~p------~~~le~~I~~~GG~v~~~~~~~~g~~~~~~~~~iTh~I~drp~~~~----~~~~r~~ 78 (100)
T 2ep8_A 9 HKKLFEGLKFFLNREVP------REALAFIIRSFGGEVSWDKSLCIGATYDVTDSRITHQIVDRPGQQT----SVIGRCY 78 (100)
T ss_dssp SCCTTSSCEEECCSSSC------HHHHHHHHHHTTCEEECCTTTSSCCCSCTTCTTCCEEECSCTTTSC----CBTTBEE
T ss_pred hHHHcCCcEEEEecCCC------HHHHHHHHHHcCCEEEeccccccCcccccCCCceEEEEecccchhh----hcCCCeE
Confidence 35789999999987654 468899999999999876 36799999999874322 1235799
Q ss_pred cCcchHHHHHHhhCCCCCCcee
Q 033679 86 GGSTVDRGSQLFVARATRREVS 107 (113)
Q Consensus 86 V~p~WL~~c~~~w~r~dE~~y~ 107 (113)
|.|.|++||....+.+|+++|.
T Consensus 79 VqPqWV~Dcin~~~lLp~~~Y~ 100 (100)
T 2ep8_A 79 VQPQWVFDSVNARLLLPVAEYF 100 (100)
T ss_dssp ECTHHHHHHHHHTSCCCTTTCC
T ss_pred EcchHHHHHHhcCCcCChhhcC
Confidence 9999999999999999999994
No 32
>2coe_A Deoxynucleotidyltransferase, terminal variant; BRCT domain, DNA polymerase, teminal deoxynucleotidyltransferase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=3.4e-12 Score=87.69 Aligned_cols=87 Identities=14% Similarity=-0.012 Sum_probs=68.0
Q ss_pred cCCCCcEEEEccccCCCCCcc-chHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHh-----C--CCeecCcch
Q 033679 19 EVLKGCKLVFSHAFPSKFPAH-IHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSK-----G--GQVFGGSTV 90 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~-~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k-----~--gi~IV~p~W 90 (113)
..|+||+|.| .|...... +.-+.+++.+.||++.+++++.|||+|+.+...+.+..-++ . +.+||+..|
T Consensus 19 ~~F~g~~iy~---v~~~~g~~R~~~l~~l~r~~G~~V~~~ls~~VTHVVve~~~~~e~~~~l~~~~l~~~~~~~lv~i~W 95 (120)
T 2coe_A 19 IKFQDLVVFI---LEKKMGTTRRALLMELARRKGFRVENELSDSVTHIVAENNSGSDVLEWLQAQKVQVSSQPELLDVSW 95 (120)
T ss_dssp CSCTTCEEEE---ECTTTCHHHHHHHHHHHHHHTCEECSSCCTTCCEEEESSCCHHHHHHHHHHCCCCCSSCCEEEEHHH
T ss_pred cccCCeEEEE---eecccchHHHHHHHHHHHHcCCEEeeccCCCcCEEEecCCCHHHHHHHHhccccccccccEEeecHH
Confidence 4699999999 34443333 35567799999999999999999999997655544544433 2 579999999
Q ss_pred HHHHHHhhCCCCCCceec
Q 033679 91 DRGSQLFVARATRREVSC 108 (113)
Q Consensus 91 L~~c~~~w~r~dE~~y~~ 108 (113)
+.+|....+.+||+.|..
T Consensus 96 l~esmk~g~lv~ee~~~~ 113 (120)
T 2coe_A 96 LIECIGAGKPVEMTGKHQ 113 (120)
T ss_dssp HHHHHHTTSCCCCSSSSB
T ss_pred HHHHHHcCCccCcccceE
Confidence 999999999999966643
No 33
>2cok_A Poly [ADP-ribose] polymerase-1; BRCT domain, DNA repair, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2le0_A
Probab=99.32 E-value=2.6e-12 Score=87.40 Aligned_cols=76 Identities=11% Similarity=0.052 Sum_probs=66.5
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC---CcHHHHHHHhCCCeecCcchHHHH
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC---SNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~---~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
.++|.|.+|+|+|.++. .+.++..+++.+||.+...++.+++|||+.+. .+.|++.|.+.||+||+-+||.++
T Consensus 8 ~~~l~G~~~ViTG~l~~----~R~e~k~~ie~~Ggkv~~sVskkT~~lV~g~~~e~~gsKl~kA~~lgI~IvsE~~l~~~ 83 (113)
T 2cok_A 8 DKPLSNMKILTLGKLSR----NKDEVKAMIEKLGGKLTGTANKASLCISTKKEVEKMNKKMEEVKEANIRVVSEDFLQDV 83 (113)
T ss_dssp CCSSSSCEEEECSCCSS----CHHHHHHHHHHTTCEEESCSTTCSEEECCHHHHHHCCHHHHHHHHTTCCEECTHHHHHH
T ss_pred CCCcCCCEEEEEecCCC----CHHHHHHHHHHCCCEEcCccccCccEEEECCCCCCCChHHHHHHHCCCcEEeHHHHHHH
Confidence 56899999999999842 56799999999999999999999999999943 678999999999999999996655
Q ss_pred HHh
Q 033679 95 QLF 97 (113)
Q Consensus 95 ~~~ 97 (113)
...
T Consensus 84 ~~~ 86 (113)
T 2cok_A 84 SAS 86 (113)
T ss_dssp HSC
T ss_pred Hhh
Confidence 443
No 34
>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3
Probab=99.28 E-value=5.3e-12 Score=92.62 Aligned_cols=92 Identities=12% Similarity=-0.027 Sum_probs=64.4
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCC-----ccEEEecCCC----cHHHHHH-HhCCCeec
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPS-----VTHVVSNKCS----NEKVSLG-SKGGQVFG 86 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~-----vTHlV~~~~~----t~K~~~A-~k~gi~IV 86 (113)
+..+|+||.|+|+|-+. .+.+..|..+++..||++...+++. +||+|...+. ..+++.+ .+.+++||
T Consensus 114 ~~~lF~g~~~~~~~~~~---~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~~vvv~~~~~~~~~~~~~l~~~~~i~iV 190 (229)
T 1l0b_A 114 QEKLFEGLQIYCCEPFT---NMPKDELERMLQLCGASVVKELPLLTRDTGAHPIVLVQPSAWTEDNDCPDIGQLCKGRLV 190 (229)
T ss_dssp C--CCTTCEEEECSCCS---SSCHHHHHHHHHHTTCEEECSSSCGGGCCSSCCEEEEC-------------------CEE
T ss_pred hhhhhcCceEEEEecCC---CCCHHHHHHHHHHCCCEEeCCcccccccCCCceEEEEcCCccchhhhHHHHHHHcCCeEe
Confidence 46799999999988653 3467799999999999999999763 6886665432 3455533 44689999
Q ss_pred CcchHHHHHHhhCCCCCCceeccCC
Q 033679 87 GSTVDRGSQLFVARATRREVSCEAN 111 (113)
Q Consensus 87 ~p~WL~~c~~~w~r~dE~~y~~~~~ 111 (113)
+++||.+|..+.+.++|++|+++..
T Consensus 191 s~~WlldsI~~~~~~~~~~Y~l~~~ 215 (229)
T 1l0b_A 191 MWDWVLDSISVYRCRDLDAYLVQNI 215 (229)
T ss_dssp ETHHHHHHHHTTSCCCGGGGBCC--
T ss_pred ehhHHHHHHhcCCcCCccceEcccc
Confidence 9999999999999999999998753
No 35
>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A
Probab=99.26 E-value=4.3e-12 Score=91.83 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=71.3
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCC-----ccEEEecCCCc----HHHH-HHHhCCCeec
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPS-----VTHVVSNKCSN----EKVS-LGSKGGQVFG 86 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~-----vTHlV~~~~~t----~K~~-~A~k~gi~IV 86 (113)
+.++|+|+.|+|+|.++ .+.+..+..+++..||++..++++. +.|+|..++.. .|++ .|.+.|+++|
T Consensus 112 ~~~lF~g~~~~~~~~~~---~~~~~~l~~li~~~GG~v~~~~~~~~~~~~~~~ivi~~~~~~~~~~~~~~~a~~~~~~iV 188 (214)
T 1t15_A 112 DRKIFRGLEICCYGPFT---NMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVV 188 (214)
T ss_dssp TSCTTTTCEEEECSCCS---SSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEE
T ss_pred CCcccCCCEEEEEecCC---CCCHHHHHHHHHHCCCEEecCccccccCCCCccEEEECCCcccchhhHHHHHHhcCCcEE
Confidence 45789999999988654 3567799999999999999988652 23455554321 2443 3556689999
Q ss_pred CcchHHHHHHhhCCCCCCceeccC
Q 033679 87 GSTVDRGSQLFVARATRREVSCEA 110 (113)
Q Consensus 87 ~p~WL~~c~~~w~r~dE~~y~~~~ 110 (113)
+|+||.+|..+.+.+||++|+++.
T Consensus 189 ~~~Wi~dsi~~~~~l~~~~Y~l~~ 212 (214)
T 1t15_A 189 TREWVLDSVALYQCQELDTYLIPQ 212 (214)
T ss_dssp EHHHHHHHHHHTSCCCSGGGBCCC
T ss_pred eccHHHHhHhhcCcCCCcceeecc
Confidence 999999999999999999998863
No 36
>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=99.22 E-value=1.5e-12 Score=97.90 Aligned_cols=91 Identities=10% Similarity=-0.010 Sum_probs=71.5
Q ss_pred hhcCCCCcEEEE-ccccCC--CCCccchHHHHHHHhcCCEEEeeeCCC-----ccEEEecCCCcHHHHHHHhCCCeecCc
Q 033679 17 QREVLKGCKLVF-SHAFPS--KFPAHIHYLWKVVEQLGATCSIELDPS-----VTHVVSNKCSNEKVSLGSKGGQVFGGS 88 (113)
Q Consensus 17 k~~vL~Gc~I~f-Sg~~p~--~~~~~~~~l~~~a~~lGA~~~~~l~~~-----vTHlV~~~~~t~K~~~A~k~gi~IV~p 88 (113)
..++|+||++++ ||.+.. +...++..|.+++.++||+++.+..+. .||+|+.+ .|.|++.+.+.|+.||+|
T Consensus 2 ~s~lF~g~~f~v~~~~~~p~~~~~~~~~~L~~li~~~GG~~~~~~~~~t~~~~~~~iI~~~-~t~k~~~~~~~~~~vV~p 80 (264)
T 1z56_C 2 ISNIFAGLLFYVLSDYVTEDTGIRITRAELEKTIVEHGGKLIYNVILKRHSIGDVRLISCK-TTTECKALIDRGYDILHP 80 (264)
T ss_dssp -CCCCCTTCCCCSEEEECCCCCSSSSCCCTHHHHHHHHTTSCCCSSCCCCCSSCCEEEECS-CCGGGGGGTTTTCCCBCS
T ss_pred ccccCCCcEEEEEcCCCCccccccCCHHHHHHHHHHcCCEEeecCCCCccCccceEEEecC-CcHHHHHHHhCCCCEEec
Confidence 357899999965 776421 122356799999999999887654433 46777765 688999888888999999
Q ss_pred chHHHHHHhhCCCCCCceec
Q 033679 89 TVDRGSQLFVARATRREVSC 108 (113)
Q Consensus 89 ~WL~~c~~~w~r~dE~~y~~ 108 (113)
+||.+|...++.++.++|.+
T Consensus 81 ~Wv~dci~~~~llp~~~y~~ 100 (264)
T 1z56_C 81 NWVLDCIAYKRLILIEPNYC 100 (264)
T ss_dssp STTHHHHSSCSCCCCCSCBS
T ss_pred hHHHHHhhcCCCCCCChHHh
Confidence 99999999999999999854
No 37
>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*
Probab=99.13 E-value=6.3e-11 Score=77.39 Aligned_cols=73 Identities=14% Similarity=0.117 Sum_probs=61.1
Q ss_pred cCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCC-CccEEEecCCCcHHHHHHHhCCCeecCcchHHHHHHh
Q 033679 19 EVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDP-SVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 19 ~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~-~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
.+|+||++.+++-+| ....|.++..++||.+..+.+. ++||+|+.++ ...+..+|+|+||++|..+
T Consensus 15 diFsg~~~~l~~~v~-----~~~~l~RyiiAfgG~v~~~~~~~~vTHvI~~~~--------~~~~~~~V~p~WI~dcI~k 81 (88)
T 3pc7_A 15 DIFTGVRLYLPPSTP-----DFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRD--------KNPAAQQVSPEWIWACIRK 81 (88)
T ss_dssp CCSTTCEECCCTTST-----THHHHHHHHHHTTCEECCGGGGGGCSEEESCCT--------TCTTSEEECHHHHHHHHHH
T ss_pred hhhcCeEEEccCCcC-----chhhheeeeeecCCEEecccCCCcCeEEecCCC--------cCCCCcEEchHHHHHHHhC
Confidence 569999999987765 2358889999999999888874 9999998774 2347999999999999999
Q ss_pred hCCCCCC
Q 033679 98 VARATRR 104 (113)
Q Consensus 98 w~r~dE~ 104 (113)
.+.++++
T Consensus 82 ~~Ll~~~ 88 (88)
T 3pc7_A 82 RRLVAPS 88 (88)
T ss_dssp TSCCSCC
T ss_pred CcccCCC
Confidence 9988763
No 38
>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*
Probab=99.03 E-value=1.6e-10 Score=84.38 Aligned_cols=82 Identities=11% Similarity=-0.001 Sum_probs=64.9
Q ss_pred hhcCCCCcE-EEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHH
Q 033679 17 QREVLKGCK-LVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQ 95 (113)
Q Consensus 17 k~~vL~Gc~-I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~ 95 (113)
+.++|+|+. ++.++. ..+.+..|..+++..||++..++. .++++|+.... ++..++++|+|+||.||.
T Consensus 116 ~~~LF~g~~~~~v~~~----~~~~~~~L~~lI~~~GG~v~~~~~-~~~iiI~~~~~------~~~~~~~~V~p~Wi~DsI 184 (199)
T 3u3z_A 116 RGTLFADQPVMFVSPA----SSPPVAKLCELVHLCGGRVSQVPR-QASIVIGPYSG------KKKATVKYLSEKWVLDSI 184 (199)
T ss_dssp CCCTTTTSCCEEECTT----CSSCHHHHHHHHHHTTCCBCSSGG-GCSEEESCCCS------CCCTTCEEECHHHHHHHH
T ss_pred cchhhCCCeEEEECCC----CCCCHHHHHHHHHHcCCEEeccCC-CCEEEEeCCch------hccCCCcEEChhHHHHHH
Confidence 468899996 544553 345678999999999999999985 45666654322 334589999999999999
Q ss_pred HhhCCCCCCceecc
Q 033679 96 LFVARATRREVSCE 109 (113)
Q Consensus 96 ~~w~r~dE~~y~~~ 109 (113)
.+.+.+|+++|.+.
T Consensus 185 ~~~~llp~~~Y~~~ 198 (199)
T 3u3z_A 185 TQHKVCAPENYLLS 198 (199)
T ss_dssp HHTSCCCGGGGBCC
T ss_pred HcCCcCChHhccCC
Confidence 99999999999874
No 39
>2dun_A POL MU, DNA polymerase MU; layers A/B/A, parallel beta-sheet of 4 strands, non- homologous END jonting, somatic hypermutation, V(D)J recombination; HET: DNA; NMR {Homo sapiens} PDB: 2htf_A*
Probab=99.02 E-value=2.8e-10 Score=79.29 Aligned_cols=85 Identities=12% Similarity=-0.006 Sum_probs=65.4
Q ss_pred CCCCcEEEEccccCCCC-CccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHH---------h-CCCeecCc
Q 033679 20 VLKGCKLVFSHAFPSKF-PAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGS---------K-GGQVFGGS 88 (113)
Q Consensus 20 vL~Gc~I~fSg~~p~~~-~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~---------k-~gi~IV~p 88 (113)
-|.||+|.+=.. .. ...+.-|.++|.+.|+++.++++++|||+|+.+.+.+.+..=+ + .+..+|+.
T Consensus 10 ~F~~v~iyive~---kmG~sRr~fL~~la~~kGf~v~~~~S~~VTHVV~E~~s~~~~~~~L~~~~~~l~~~~~~~~lLdi 86 (133)
T 2dun_A 10 RFPGVAIYLVEP---RMGRSRRAFLTGLARSKGFRVLDACSSEATHVVMEETSAEEAVSWQERRMAAAPPGCTPPALLDI 86 (133)
T ss_dssp SEEEEEEEECHH---HHCSHHHHHHHHHHHHHTEEECSSCCTTCCEEEESSCCHHHHHHHHHHHHHHSCTTCCCCEEEEH
T ss_pred ccCccEEEEecC---CcCHHHHHHHHHHHHhcCCEeccccCCCceEEEecCCCHHHHHHHHHHhhcccCcCCCCcEEecc
Confidence 478888888443 22 3345788999999999999999999999999665543333112 1 35899999
Q ss_pred chHHHHHHhhCCCCCCcee
Q 033679 89 TVDRGSQLFVARATRREVS 107 (113)
Q Consensus 89 ~WL~~c~~~w~r~dE~~y~ 107 (113)
.||.+|+...+.+||+.|.
T Consensus 87 sWltecm~~g~pV~~e~~~ 105 (133)
T 2dun_A 87 SWLTESLGAGQPVPVECRH 105 (133)
T ss_dssp HHHHHHHHHTSCCCCCTTT
T ss_pred HHHHHHHhcCCcCCcccce
Confidence 9999999999999996553
No 40
>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A
Probab=99.01 E-value=1.3e-09 Score=79.74 Aligned_cols=90 Identities=13% Similarity=0.071 Sum_probs=72.4
Q ss_pred hhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCc--cEEEecCC-CcHHHHHHHhCCCeecCcchHH
Q 033679 16 GQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSV--THVVSNKC-SNEKVSLGSKGGQVFGGSTVDR 92 (113)
Q Consensus 16 ~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~v--THlV~~~~-~t~K~~~A~k~gi~IV~p~WL~ 92 (113)
-+..+|+|++|++++.+ .+....+..+++..||++...+++.. +|+|...+ ...+++.+.+.|+++|+++||.
T Consensus 111 ~~~~lF~g~~~~~~~~~----~~~~~~l~~li~~~GG~v~~~~~~~~~~~~ivI~~~~d~~~~~~~~~~~i~vvs~eWi~ 186 (209)
T 2etx_A 111 RERRLLEGYEIYVTPGV----QPPPPQMGEIISCCGGTYLPSMPRSYKPQRVVITCPQDFPHCSIPLRVGLPLLSPEFLL 186 (209)
T ss_dssp HHSCTTTTCEEEECTTC----SSCHHHHHHHHHHTTCEECSSCCCSCCTTEEEECCGGGGGGCHHHHHHTCCEECTHHHH
T ss_pred hhCCCcCCcEEEEeCCC----CCCHHHHHHHHHHCCCEEECCCCCCCCCceEEEECcccHHHHHHHHHCCCeEEcHHHHH
Confidence 34588999999998764 34567899999999999999887643 67777543 4456677778899999999999
Q ss_pred HHHHhhCCCCCCceeccC
Q 033679 93 GSQLFVARATRREVSCEA 110 (113)
Q Consensus 93 ~c~~~w~r~dE~~y~~~~ 110 (113)
+|..+ .++|++.|.+..
T Consensus 187 ~sI~~-q~ld~e~y~l~~ 203 (209)
T 2etx_A 187 TGVLK-QEAKPEAFVLSP 203 (209)
T ss_dssp HHHHH-TCCCGGGGBCCT
T ss_pred HHHHh-cccChHHheecC
Confidence 99998 557999999854
No 41
>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B
Probab=98.95 E-value=1.2e-09 Score=82.64 Aligned_cols=89 Identities=8% Similarity=-0.018 Sum_probs=69.1
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC---------CCccEEEecCC--CcHHHHHHHhCCCee
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD---------PSVTHVVSNKC--SNEKVSLGSKGGQVF 85 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~---------~~vTHlV~~~~--~t~K~~~A~k~gi~I 85 (113)
+.++|+|+.|++++.+..+ ....+..+++.+||++...+. ...+|+|..+. ..++.+.|.+.+++|
T Consensus 152 ~~~LF~G~~I~i~~~~~~~---~~~~~~~Il~~~Ga~vv~~~~s~~~~~d~~~~~~~viv~d~~~~~~~~~~a~~~~i~i 228 (259)
T 1kzy_C 152 RENPFQNLKVLLVSDQQQN---FLELWSEILMTGGAASVKQHHSSAHNKDIALGVFDVVVTDPSCPASVLKCAEALQLPV 228 (259)
T ss_dssp CCCTTTTCEEEEEESCTTT---THHHHHHHHHHTTCSEEEEEESSSSCCCSCGGGCSEEEECTTCCHHHHHHHHHHTCCE
T ss_pred cCCCCCCeEEEEecCCCCC---HHHHHHHHHHhcCCEEEeccccchhhhhccCCCCeEEEECCCChHHHHHHHHhcCCCE
Confidence 3578999999998875211 223455589999999988874 25677777653 246677888889999
Q ss_pred cCcchHHHHHHhhCCCCCCceec
Q 033679 86 GGSTVDRGSQLFVARATRREVSC 108 (113)
Q Consensus 86 V~p~WL~~c~~~w~r~dE~~y~~ 108 (113)
|+.+||.+|..+.+.+|+..++=
T Consensus 229 Vs~EWv~~sI~~~~ll~~~~hp~ 251 (259)
T 1kzy_C 229 VSQEWVIQCLIVGERIGFKQHPK 251 (259)
T ss_dssp ECHHHHHHHHHHTSCCCTTSSGG
T ss_pred ecHHHHHHHHHhCCcCCCCcCcc
Confidence 99999999999999999998763
No 42
>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A
Probab=98.86 E-value=1.5e-09 Score=78.94 Aligned_cols=84 Identities=12% Similarity=-0.016 Sum_probs=65.0
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC-----------------------CCccEEEecCCCcHH
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD-----------------------PSVTHVVSNKCSNEK 74 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~-----------------------~~vTHlV~~~~~t~K 74 (113)
.++|+||.++|+|-+. .+.+..|..+++..||++..... +.+||.|..+++...
T Consensus 102 ~~lF~g~~~~l~~~~~---~~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~v~~~~~~~~~~~~~t~~iv~~~~~~~ 178 (210)
T 2nte_A 102 PKLFDGCYFYLWGTFK---HHPKDNLIKLVTAGGGQILSRKPKPDSDVTQTINTVAYHARPDSDQRFCTQYIIYEDLCNY 178 (210)
T ss_dssp CCTTTTCEEEECSCCS---SSCHHHHHHHHHHTTCEEESSCCCGGGCGGGSSCCCCTTSCTTCGGGTCCEEEEECSCSSC
T ss_pred ccccCceEEEEeccCC---CCCHHHHHHHHHHCCCEEEecCCCCccccccccceeeeccCCCcccccceEEEEecccccc
Confidence 5789999999998643 35678999999999999986221 457999998875221
Q ss_pred -HHHHHhCCCeecCcchHHHHHHhhCCCCCC
Q 033679 75 -VSLGSKGGQVFGGSTVDRGSQLFVARATRR 104 (113)
Q Consensus 75 -~~~A~k~gi~IV~p~WL~~c~~~w~r~dE~ 104 (113)
...|...++++|+++||++|..+.+.+|.+
T Consensus 179 ~~~~~~~~~v~~V~~~Wl~dcI~~~~llp~~ 209 (210)
T 2nte_A 179 HPERVRQGKVWKAPSSWFIDCVMSFELLPLD 209 (210)
T ss_dssp CCSCSEETTEEEEEHHHHHHHHHHTSCCCSC
T ss_pred CHHHHhccCcccccHHHHHHHHHhCeeccCC
Confidence 123444578999999999999999998865
No 43
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}
Probab=98.51 E-value=5.9e-07 Score=66.37 Aligned_cols=89 Identities=9% Similarity=-0.052 Sum_probs=69.9
Q ss_pred hhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCC-------------CccEEEecCCCcHHHHHHHhC
Q 033679 15 NGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDP-------------SVTHVVSNKCSNEKVSLGSKG 81 (113)
Q Consensus 15 ~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~-------------~vTHlV~~~~~t~K~~~A~k~ 81 (113)
.-+.++|+|+.|++++.+. +....+..+++..||++...+.+ .-..+|+.+.....++.+.+.
T Consensus 117 a~~~~LF~G~~f~it~~~~----~~~~~l~~lI~~~GG~v~~~~p~~~~~~~~~~~~~~~~~ivis~~~d~~~~~~~~~~ 192 (219)
T 3sqd_A 117 AHVSPLFKAKYFYITPGIC----PSLSTMKAIVECAGGKVLSKQPSFRKLMEHKQNSSLSEIILISCENDLHLCREYFAR 192 (219)
T ss_dssp HHHSCTTTTEEEEECTTCS----SCHHHHHHHHHHTTCEEESSCCCHHHHHHHHHCTTSCEEEEEECGGGGGGGHHHHHT
T ss_pred hccccccCCcEEEEeCCCC----CCHHHHHHHHHHCCCEEECCCCchHHhhhhhcccCCCCEEEEecccHHHHHHHHHHC
Confidence 3467899999999998653 45679999999999999998753 234566666677788888889
Q ss_pred CCeecCcchHHHHHHhhCCCCCCceec
Q 033679 82 GQVFGGSTVDRGSQLFVARATRREVSC 108 (113)
Q Consensus 82 gi~IV~p~WL~~c~~~w~r~dE~~y~~ 108 (113)
|++|++++|+.+|..+-+- |=+.|.+
T Consensus 193 ~~~v~s~E~il~~Il~q~l-d~~~~~~ 218 (219)
T 3sqd_A 193 GIDVHNAEFVLTGVLTQTL-DYESYKF 218 (219)
T ss_dssp TCCCEETHHHHHHHHHTCC-CTTTSBC
T ss_pred CCcEEeHHHHHHHHHheee-cchhccc
Confidence 9999999999999996544 5555543
No 44
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A*
Probab=98.49 E-value=1.5e-08 Score=85.97 Aligned_cols=75 Identities=12% Similarity=0.089 Sum_probs=0.0
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHHH
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQL 96 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~~ 96 (113)
..+|.|.++||+|.++. ++..+..+++.+||++...++.++++||+.+..+.|.+.|.+.||+|++-+|+.+...
T Consensus 585 ~~~l~G~~~v~TG~l~~----~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l~ 659 (667)
T 1dgs_A 585 SDLLSGLTFVLTGELSR----PREEVKALLGRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVAVLTEEEFWRFLK 659 (667)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred ccccCCCEEEEeCCCCC----CHHHHHHHHHHcCCEEcCcccCCeeEEEECCCCChHHHHHHHCCCeEEeHHHHHHHHh
Confidence 45799999999999864 5568899999999999999999999999998878999999999999999999888765
No 45
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=98.47 E-value=1.8e-08 Score=85.52 Aligned_cols=75 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCCCcHHHHHHHhCCCeecCcchHHHHH
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCSNEKVSLGSKGGQVFGGSTVDRGSQ 95 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c~ 95 (113)
..+|.|.++||+|.++. .++..+..+++.+||++...++.++++||+.+..+.|.+.|.+.||+|++-+|+.+..
T Consensus 595 ~~~l~G~~~v~TG~l~~---~~R~e~~~~i~~~Ggkv~~sVSkkTd~lV~G~~~gsKl~KA~~lgI~Ii~E~~f~~~l 669 (671)
T 2owo_A 595 DSPFAGKTVVLTGSLSQ---MSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMLRLL 669 (671)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred CCcccCcEEEEcCCCCC---CCHHHHHHHHHHcCCEEeCcccCceeEEEECCCCChHHHHHHHCCCcEEcHHHHHHHh
Confidence 35799999999999864 2456889999999999999999999999999887899999999999999999887764
No 46
>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*
Probab=98.42 E-value=2.9e-07 Score=68.95 Aligned_cols=81 Identities=10% Similarity=-0.059 Sum_probs=60.6
Q ss_pred hhhcCCCCcEEEEccccCCCCCc-----------cchHHHHHHHhcCCEE--EeeeCCCccEEEecCCCcHHHHHHHhCC
Q 033679 16 GQREVLKGCKLVFSHAFPSKFPA-----------HIHYLWKVVEQLGATC--SIELDPSVTHVVSNKCSNEKVSLGSKGG 82 (113)
Q Consensus 16 ~k~~vL~Gc~I~fSg~~p~~~~~-----------~~~~l~~~a~~lGA~~--~~~l~~~vTHlV~~~~~t~K~~~A~k~g 82 (113)
-|.++|.|++|.|..-.. ..+ .......+++.+||++ ..++++..+|+|..+.+. .|.+.+
T Consensus 147 ~~~~Lf~g~~i~~~~~~~--~~~~~~~~~~~~g~~~~~~~~i~~~~Ga~~~~v~~~~~~~~d~v~~~~~~----~~~~~~ 220 (241)
T 2vxb_A 147 ARKGPLFGKKILFIIPEA--KSWQKKIENTEQGQKALAHVYHALALGADVEIRPNVAHLECDLILTMDGN----IVDETN 220 (241)
T ss_dssp HCCCTTTTCEEEECCCC--------------CHHHHHHHHHHHHHTTCEEECCSCCSSCCCSEEECSSSC----CCSSCS
T ss_pred hcCcCCCCcEEEEEeCCC--cccccccccccccchHHHHHHHHHHcCCceecccccccCCccEEEECCcc----ccccCC
Confidence 356889999999964311 001 1245667899999999 666666789999986543 255678
Q ss_pred CeecCcchHHHHHHhhCCCC
Q 033679 83 QVFGGSTVDRGSQLFVARAT 102 (113)
Q Consensus 83 i~IV~p~WL~~c~~~w~r~d 102 (113)
++||+++|+.+|....+++|
T Consensus 221 ~~iV~~eWv~~~i~~g~~l~ 240 (241)
T 2vxb_A 221 CPVVDPEWIVECLISQSDIS 240 (241)
T ss_dssp SCEECHHHHHHHHHHTSCTT
T ss_pred CCEecHHHHHHHHHhceecC
Confidence 99999999999999999886
No 47
>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*
Probab=98.12 E-value=2.7e-06 Score=63.51 Aligned_cols=88 Identities=8% Similarity=0.013 Sum_probs=69.0
Q ss_pred hcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCC----CccEEEecCCC------cHHHHHHHhCCCeecC
Q 033679 18 REVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDP----SVTHVVSNKCS------NEKVSLGSKGGQVFGG 87 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~----~vTHlV~~~~~------t~K~~~A~k~gi~IV~ 87 (113)
.++|+|+.++|.+. .+....+.++++.-||++....++ ..||.+....+ ..+++.+.+.|+++|+
T Consensus 133 ~~lF~g~~v~l~~~-----~~~~~~l~~ii~agGg~vl~~~~~~~~~~~t~~~vd~~~~~~~~~~~~~~~~~~~~i~~v~ 207 (235)
T 3al2_A 133 EGAFSGWKVILHVD-----QSREAGFKRLLQSGGAKVLPGHSVPLFKEATHLFSDLNKLKPDDSGVNIAEAAAQNVYCLR 207 (235)
T ss_dssp SSTTTTCEEEEECC-----HHHHHHHHHHHHHTTCEECSSCCGGGGGGCSEEEECC--------CCCHHHHHHTTCEEEE
T ss_pred CCCCCCcEEEEecC-----CCcHHHHHHHHHcCCcEEecCCCCCccccCceEEEecccCCccchhHHHHHHHHcCCcEEc
Confidence 47999999999764 134568899999999999876543 46898775321 1346667778999999
Q ss_pred cchHHHHHHhhCCCCCCceeccC
Q 033679 88 STVDRGSQLFVARATRREVSCEA 110 (113)
Q Consensus 88 p~WL~~c~~~w~r~dE~~y~~~~ 110 (113)
++||.++..+-...+-++|.++.
T Consensus 208 ~ewlld~i~~~~~~~~~~y~l~~ 230 (235)
T 3al2_A 208 TEYIADYLMQESPPHVENYCLPE 230 (235)
T ss_dssp THHHHHHHHCSSCCCHHHHBCGG
T ss_pred HHHHHHHHhcCCCCChhheEccc
Confidence 99999999999999999998864
No 48
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=97.99 E-value=3.3e-05 Score=58.76 Aligned_cols=98 Identities=9% Similarity=-0.094 Sum_probs=73.0
Q ss_pred HHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCC--CccEEEecCC-CcHHHHHHHhCC--Ce
Q 033679 10 FFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDP--SVTHVVSNKC-SNEKVSLGSKGG--QV 84 (113)
Q Consensus 10 ~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~--~vTHlV~~~~-~t~K~~~A~k~g--i~ 84 (113)
+.||..+-...--..+++.+|.--. .-+..++ +..+.+|-.+..+++. .++|++|++. .|+|+-.|+..+ -+
T Consensus 9 ~~il~~~~~~~~~~i~ai~TGc~~~--~~~~~D~-~~Lr~LGI~Iv~d~~~~~~~n~LiAPkilRT~KFL~sLa~~P~~~ 85 (256)
T 3t7k_A 9 EKILARFNELPNYDLKAVCTGCFHD--GFNEVDI-EILNQLGIKIFDNIKETDKLNCIFAPKILRTEKFLKSLSFEPLKF 85 (256)
T ss_dssp HHHHHTCSCCCCCCEEEEESSSCSS--CCCHHHH-HHHHHTTEEECSSCCGGGCCCEEECSSCCCBHHHHHHTTSTTCCE
T ss_pred HHHHHhcccCCCeeEEEEecCCccc--ccCHHHH-HHHHHcCeEEEecCcccCCCCEEEcCchhhHHHHHHHhccCccce
Confidence 3444433333336778888888412 2333343 5689999999999974 8999999987 899999999986 37
Q ss_pred ecCcchHHHHHHh---hC------CCCCCceeccC
Q 033679 85 FGGSTVDRGSQLF---VA------RATRREVSCEA 110 (113)
Q Consensus 85 IV~p~WL~~c~~~---w~------r~dE~~y~~~~ 110 (113)
|++|+||.+|+.. .+ ..|.++|.+..
T Consensus 86 il~p~FI~~~Lk~ih~~~~~~~~~~l~~~dY~L~d 120 (256)
T 3t7k_A 86 ALKPEFIIDLLKQIHSKKDKLSQININLFDYEING 120 (256)
T ss_dssp EECTHHHHHHHHHHC-------CCCCCSSTTBCTT
T ss_pred EeCHHHHHHHHHHhhcCCcccccccCChhhccCCC
Confidence 9999999999998 56 77888888754
No 49
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=97.94 E-value=8.4e-06 Score=63.94 Aligned_cols=57 Identities=12% Similarity=-0.010 Sum_probs=48.3
Q ss_pred chHHHHHHHhcCCEEEeee-CCCccEEEecCCCc----HHHHHHHhCCCeecCcchHHHHHHh
Q 033679 40 IHYLWKVVEQLGATCSIEL-DPSVTHVVSNKCSN----EKVSLGSKGGQVFGGSTVDRGSQLF 97 (113)
Q Consensus 40 ~~~l~~~a~~lGA~~~~~l-~~~vTHlV~~~~~t----~K~~~A~k~gi~IV~p~WL~~c~~~ 97 (113)
+..+...+++||+.+. +. ++.|||||..+.+| .|.-+|+=.|++||+|+|+.+....
T Consensus 126 ~~~L~~~L~~LGik~v-~~~~detTHlVm~krnT~KvTvK~L~ALI~gkPIV~~~Fl~al~~~ 187 (325)
T 3huf_A 126 LSQWASNLNLLGIPTG-LRDSDATTHFVMNRQAGSSITVGTMYAFLKKTVIIDDSYLQYLSTV 187 (325)
T ss_dssp HHHHHHHHHTTTCCEE-SSCCTTCCEEECCCCCSSCCCHHHHHHHHTTCEEECHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCEEE-EccCCCEEEEEEeccccccchHHHHHHHHCCCcEecHHHHHHHHHh
Confidence 3458889999999999 77 78899999986554 5599999999999999999997543
No 50
>4gns_A Chitin biosynthesis protein CHS5; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=97.86 E-value=4.8e-05 Score=56.08 Aligned_cols=96 Identities=17% Similarity=0.107 Sum_probs=72.6
Q ss_pred hhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEE-eeeCCCccEEEecCC----CcHHHHHHHhCCCeecCcch
Q 033679 16 GQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCS-IELDPSVTHVVSNKC----SNEKVSLGSKGGQVFGGSTV 90 (113)
Q Consensus 16 ~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~-~~l~~~vTHlV~~~~----~t~K~~~A~k~gi~IV~p~W 90 (113)
-|-.-++|.++|+.-.-|.. ..+.-.+.+.....||+-. ..+.-++||.||.+. +.+..-.|+-.+|+||.|+|
T Consensus 157 hkmtdmsgitvclgpldplk-eisdlqisqclshigarplqrhvaidtthfvcndldneesneelirakhnnipivrpew 235 (290)
T 4gns_A 157 HKMTDMSGITVCLGPLDPLK-EISDLQISQCLSHIGARPLQRHVAIDTTHFVCNDLDNEESNEELIRAKHNNIPIVRPEW 235 (290)
T ss_dssp CCTTCCTTCCEEECCCCGGG-TCCHHHHHHHHHHTTCCCCBSSCCTTCCEEECSCCTTCTTCHHHHHHHHTTCCEECTHH
T ss_pred cccccccCceEEecCCChhh-hhhhccHHHHHHHhCCchhhheeeeecceeeecCCCcccchHHHHhhhccCCCccCHHH
Confidence 33445789999996555543 2234567788888999854 445568999999865 46667778778999999999
Q ss_pred HHHHHHhhCCCCCCceeccCCC
Q 033679 91 DRGSQLFVARATRREVSCEANQ 112 (113)
Q Consensus 91 L~~c~~~w~r~dE~~y~~~~~~ 112 (113)
+.+|.-..+-+.-+.|-+...|
T Consensus 236 vracevekrivgvrgfyldadq 257 (290)
T 4gns_A 236 VRACEVEKRIVGVRGFYLDADQ 257 (290)
T ss_dssp HHHHHHTTSCCCSGGGBTTSCG
T ss_pred HHHHhhhheeeeeeeEEEcccH
Confidence 9999999998888888776654
No 51
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00032 Score=46.56 Aligned_cols=87 Identities=7% Similarity=-0.051 Sum_probs=66.7
Q ss_pred hcCCCCcEEEEccccCC-CCCccchHHHHHHHhcCCEEEeeeCCCc--cEEEecCCCcHHHHHHHhCCCeecCcchHHHH
Q 033679 18 REVLKGCKLVFSHAFPS-KFPAHIHYLWKVVEQLGATCSIELDPSV--THVVSNKCSNEKVSLGSKGGQVFGGSTVDRGS 94 (113)
Q Consensus 18 ~~vL~Gc~I~fSg~~p~-~~~~~~~~l~~~a~~lGA~~~~~l~~~v--THlV~~~~~t~K~~~A~k~gi~IV~p~WL~~c 94 (113)
..||+|..+.+..--.. +.--+...|.++++..||++...+..+. -+.|++..++. +++.|+|..|.+|
T Consensus 9 ~~vF~g~~Fyin~d~~a~ds~~d~d~L~~lI~~nGG~Vl~~lP~~s~~~~yVVSpyN~t--------~LpTVtpTYI~aC 80 (106)
T 2l42_A 9 GPPLSNMKFYLNRDADAHDSLNDIDQLARLIRANGGEVLDSKPRESKENVFIVSPYNHT--------NLPTVTPTYIKAC 80 (106)
T ss_dssp SCSSCCCCBEECCSSSCSSCSSTHHHHHHHHHTTTSCCCEECCCCCSSCCCCBCTTCCC--------SSSBCCTTHHHHH
T ss_pred CccccCcEEEEcCCCccchhhhHHHHHHHHHHhcCcEEhhhCcccccCCeEEEeCCCCC--------CCccccHHHHHHH
Confidence 35689988888654221 1222347999999999999999997654 35566555533 7899999999999
Q ss_pred HHhhCCCCCCceeccCCC
Q 033679 95 QLFVARATRREVSCEANQ 112 (113)
Q Consensus 95 ~~~w~r~dE~~y~~~~~~ 112 (113)
+.+.+.++=.+|+++-.+
T Consensus 81 ~~~nTLLnv~~YLvp~d~ 98 (106)
T 2l42_A 81 CQSNSLLNMENYLVPYDN 98 (106)
T ss_dssp HHSTTSCGGGGCCBCSCC
T ss_pred HhcCceecccccccCchh
Confidence 999999999999997543
No 52
>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*
Probab=96.96 E-value=0.0011 Score=48.95 Aligned_cols=88 Identities=9% Similarity=0.088 Sum_probs=59.7
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC-----------CCccEEEecCCCc---HHHHHHHh--
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD-----------PSVTHVVSNKCSN---EKVSLGSK-- 80 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~-----------~~vTHlV~~~~~t---~K~~~A~k-- 80 (113)
+.++|+|+.|++++.+- .+|....+..+++..||++.. .. +.-..||+.+... .+++...+
T Consensus 110 ~~~LF~G~~f~it~~~~--~~p~~~~l~~iI~~~GG~v~~-~p~~~~~~~~~~~~~~~~vis~~~d~~~~~~f~~~~~~~ 186 (220)
T 3l41_A 110 GPSLLEDYVVYLTSKTV--APENVPAVISIVKSNGGVCST-LNVYNKRLARHLEDGNVVLITCNEDSHIWTNFLDNASQN 186 (220)
T ss_dssp CSCTTTTSEEEEETTSS--CGGGHHHHHHHHHHTTCEEEE-ECSCCHHHHHHHHHCCEEEEECGGGHHHHTTTHHHHTTC
T ss_pred CchhhhheeEEEecccc--CCCCCceEEEEEecCCcEech-hhHHHHHHHHhcccCCEEEEEeCCcchHHHHhhcccccc
Confidence 37899999999987650 035677999999999999988 21 1125677664322 12222222
Q ss_pred CCCeecCcchHHHHHHhhCCCCCCcee
Q 033679 81 GGQVFGGSTVDRGSQLFVARATRREVS 107 (113)
Q Consensus 81 ~gi~IV~p~WL~~c~~~w~r~dE~~y~ 107 (113)
.++.||+++||.++..+-+---|+.+.
T Consensus 187 ~~~~i~~~e~ll~~il~q~l~~~~~~~ 213 (220)
T 3l41_A 187 KTIFLQNYDWLIKTVLRQEIDVNDRIA 213 (220)
T ss_dssp TTEEEEEHHHHHHHHHHTCCCTTCCBC
T ss_pred ceEEEechhHHHHHHHHHHcCcchHHH
Confidence 247799999999999877665555543
No 53
>3qbz_A DDK kinase regulatory subunit DBF4; FHA domain,RAD53, replication checkpoint, cell cycle; 2.69A {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0011 Score=47.19 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=48.5
Q ss_pred hcCCC-CcEEEEccccCCCCCc-cc-------hHHHHHHHhcCCEEEeeeCCCccEEEecCCC--------cHHHHHHHh
Q 033679 18 REVLK-GCKLVFSHAFPSKFPA-HI-------HYLWKVVEQLGATCSIELDPSVTHVVSNKCS--------NEKVSLGSK 80 (113)
Q Consensus 18 ~~vL~-Gc~I~fSg~~p~~~~~-~~-------~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~--------t~K~~~A~k 80 (113)
+++|. +++|.|=..-+...+. .+ ..+.+....|||++..-++..|||||..++- ++-+..|.+
T Consensus 56 Rkifk~~~vfYFDt~~~~~~~~~~k~kl~K~~~llkr~f~~LGA~I~~FFd~~VTiVIT~R~i~~~~~~~~~Dil~~A~~ 135 (160)
T 3qbz_A 56 KKIMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKK 135 (160)
T ss_dssp HHHHHHHCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHTTTCEEESSCCTTCCEEEESSCSSCGGGSCTTSHHHHHHH
T ss_pred HHhCccCcEEEecCCChhhhhHHHHHHHHHHHHHHHHHHHHcCCEeeeeccCCeEEEEecCcCcccccCCchhHHHHHHH
Confidence 56677 8999997653221110 01 1233456799999999999999999999872 334677877
Q ss_pred CCCeecC
Q 033679 81 GGQVFGG 87 (113)
Q Consensus 81 ~gi~IV~ 87 (113)
.+++|=+
T Consensus 136 ~~mKVW~ 142 (160)
T 3qbz_A 136 NYMKVWS 142 (160)
T ss_dssp TTCEEEE
T ss_pred cCceecc
Confidence 7888744
No 54
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.70A {Saccharomyces cerevisiae}
Probab=96.88 E-value=0.004 Score=43.91 Aligned_cols=76 Identities=14% Similarity=0.124 Sum_probs=51.5
Q ss_pred hcCC-CCcEEEEccccCCCCCc--------cchHHHHHHHhcCCEEEeeeCCCccEEEecCC--------CcHHHHHHHh
Q 033679 18 REVL-KGCKLVFSHAFPSKFPA--------HIHYLWKVVEQLGATCSIELDPSVTHVVSNKC--------SNEKVSLGSK 80 (113)
Q Consensus 18 ~~vL-~Gc~I~fSg~~p~~~~~--------~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~--------~t~K~~~A~k 80 (113)
++++ ++-+|.|=..-+.+... .+..|.+....+||++..-++..|||+|..++ .++-...|.+
T Consensus 18 rkIM~r~s~iYFdt~~~~~~~~~~~~~l~k~~~llkk~f~~LGa~I~~FFd~~VTiIITrR~~~~~~~yp~~DIL~rAr~ 97 (151)
T 3oq0_A 18 GSHMKRDSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKK 97 (151)
T ss_dssp ---CCCCCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHH
T ss_pred HHHhccCCEEEEeCCCcchhhHHHHHHHHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHH
Confidence 5566 88899996542221110 11334455689999999999999999999986 3445678888
Q ss_pred CCCeecCcchHHH
Q 033679 81 GGQVFGGSTVDRG 93 (113)
Q Consensus 81 ~gi~IV~p~WL~~ 93 (113)
.|++|=+.+=|..
T Consensus 98 ~~mKIWs~EKl~R 110 (151)
T 3oq0_A 98 NYMKVWSYEKAAR 110 (151)
T ss_dssp TTCEEEEHHHHHH
T ss_pred cCCeeecHHHHHH
Confidence 9999977665553
No 55
>3oq4_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA domain, regula subunit of DDK, CDC7, phosphorylation, nuclear; 2.40A {Saccharomyces cerevisiae}
Probab=96.64 E-value=0.0038 Score=43.25 Aligned_cols=71 Identities=15% Similarity=0.108 Sum_probs=49.3
Q ss_pred CcEEEEccccCCCCC--------ccchHHHHHHHhcCCEEEeeeCCCccEEEecCCC--------cHHHHHHHhCCCeec
Q 033679 23 GCKLVFSHAFPSKFP--------AHIHYLWKVVEQLGATCSIELDPSVTHVVSNKCS--------NEKVSLGSKGGQVFG 86 (113)
Q Consensus 23 Gc~I~fSg~~p~~~~--------~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~~--------t~K~~~A~k~gi~IV 86 (113)
..+|.|-+.-+.+.. ..+..|.+-...+||++..-++..|||+|..++- ++-...|.+.|++|=
T Consensus 7 ~s~iyfd~~~~~~~~~~~~~k~~k~~~llk~~f~~LGa~I~~FFd~~VTiiITrR~~~~~~~~p~~DIL~rAr~~~mKIW 86 (134)
T 3oq4_A 7 DSRIYFDITDDVEMNTYNKSKMDKRRDLLKRGFLTLGAQITQFFDTTVTIVITRRSVENIYLLKDTDILSRAKKNYMKVW 86 (134)
T ss_dssp TCEEEECCCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCEEESSCCTTCCEEEESSCGGGGGGSCTTSHHHHHHHTTCEEE
T ss_pred cceEEecCCchHHHHHHHHHhhHHHHHHHHHHHHHcCCEEeeecCCceEEEEeCCcCcccccCCcchHHHHHHHcCCeee
Confidence 457888655332211 0113455556799999999999999999999863 444678888999997
Q ss_pred CcchHHH
Q 033679 87 GSTVDRG 93 (113)
Q Consensus 87 ~p~WL~~ 93 (113)
+.+=|..
T Consensus 87 s~EKl~R 93 (134)
T 3oq4_A 87 SYEKAAR 93 (134)
T ss_dssp EHHHHHH
T ss_pred eHHHHHH
Confidence 7665543
No 56
>3t7k_A RTT107, regulator of TY1 transposition protein 107; BRCT, DNA repair, phospho-peptide, protein binding; HET: SEP; 2.03A {Saccharomyces cerevisiae} PDB: 3t7j_A* 3t7i_A
Probab=77.40 E-value=2.6 Score=31.88 Aligned_cols=82 Identities=11% Similarity=-0.028 Sum_probs=53.7
Q ss_pred HhhhhcCCCCc---EEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCC--------------------CccEEEecCC
Q 033679 14 ENGQREVLKGC---KLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDP--------------------SVTHVVSNKC 70 (113)
Q Consensus 14 ~~~k~~vL~Gc---~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~--------------------~vTHlV~~~~ 70 (113)
.+.+.++|+|. .|-+|--+|.|.+ .+..+++.+||.-...+.. ...+++.+..
T Consensus 129 ~~~~gkLf~~~~I~ciNls~dI~GG~e----~issIleahG~~~~~~l~~~~~~~~dl~~n~~~~~~~~~~~~~ILia~K 204 (256)
T 3t7k_A 129 TKLPTKVFERANIRCINLVNDIPGGVD----TIGSVLKAHGIEKINVLRSKKCTFEDIIPNDVSKQENGGIFKYVLIVTK 204 (256)
T ss_dssp TTSSSCHHHHTTCCEEEEETTCTTCHH----HHHHHHHHTTCCEEEEECTTTCCGGGCCCCC--------CCSEEEECSC
T ss_pred hccccccccCCcceeeeeccCCCCCHH----HHHHHHHHcCCceeeecccccccHHHhhhccccccccCCCCCEEEEEcc
Confidence 45567889998 5666888887755 7788999999976555533 1334444433
Q ss_pred -C-cHHHHHHHh-----CCCeecCcchHHHHHHhhC
Q 033679 71 -S-NEKVSLGSK-----GGQVFGGSTVDRGSQLFVA 99 (113)
Q Consensus 71 -~-t~K~~~A~k-----~gi~IV~p~WL~~c~~~w~ 99 (113)
+ +.+++.-.+ ..+.+|..+|.-.|...-+
T Consensus 205 ~~q~k~Fkk~~~~~~~n~~~lvveWdWCVksIF~le 240 (256)
T 3t7k_A 205 ASQVKKFTKLINDRDKNETILIVEWNWCVESIFHLN 240 (256)
T ss_dssp HHHHHHHHHHHHHHSTTSCEEEECHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhcccccceEEEEEcHHHHHHHhhee
Confidence 1 233333332 2479999999999986543
No 57
>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*
Probab=68.87 E-value=8.9 Score=30.88 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=40.1
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-Cc-HHHHHHHh-CCCeecC
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SN-EKVSLGSK-GGQVFGG 87 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t-~K~~~A~k-~gi~IV~ 87 (113)
+.+||+|++|..+-.+ .++...|-.-...+||.+.-.- .++ +| +-+-.|+. .||+|..
T Consensus 48 ~~~pl~G~ri~~~lH~----~~~Ta~l~~tL~~~GA~v~~~~---------~n~~stqd~~aaal~~~gi~v~a 108 (435)
T 3gvp_A 48 GEKPLAGAKIVGCTHI----TAQTAVLMETLGALGAQCRWAA---------CNIYSTLNEVAAALAESGFPVFA 108 (435)
T ss_dssp TTCTTTTCEEEEEECC----SHHHHHHHHHHHHTTCEEEEEE---------SSSSCCCHHHHHHHHHHTCCEEC
T ss_pred ccCCCCCCEEEEEEcc----HHHHHHHHHHHHHCCCEEEEEe---------cCCCcChHHHHHHHHhcCCeEEE
Confidence 3789999999986653 4667788888899999998322 233 34 33445554 4888864
No 58
>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*
Probab=60.79 E-value=12 Score=30.10 Aligned_cols=57 Identities=19% Similarity=0.162 Sum_probs=38.7
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcH-HHHHHHh-CCCeec
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNE-KVSLGSK-GGQVFG 86 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~-K~~~A~k-~gi~IV 86 (113)
+.+||+|++|.-+-. ..++...|-.-...+||.|.-. ..++ +|+ -+-.|+. .||+|.
T Consensus 37 ~~~pl~g~ri~~~lh----~~~~Ta~l~~tL~~~GA~v~~~---------~~n~~stqd~~aaal~~~gi~v~ 96 (436)
T 3h9u_A 37 PSKPLKGAKIAGCLH----MTMQTAVLIETLVELGAEVRWA---------SCNIFSTQDHAAAAIAKRGIPVF 96 (436)
T ss_dssp TTCTTTTCEEEEESC----CSHHHHHHHHHHHHTTCEEEEE---------CSSTTTCCHHHHHHHHHTTCCEE
T ss_pred ccCCCCCCEEEEEec----cHHHHHHHHHHHHHcCCEEEEe---------cCCCCCCcHHHHHHHHhcCCeEE
Confidence 488999999988644 3466778888889999999621 1233 343 3445544 588885
No 59
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=53.13 E-value=4 Score=31.62 Aligned_cols=66 Identities=15% Similarity=0.073 Sum_probs=42.9
Q ss_pred ccccCCCCCcc--chHHHHHHHhcCCEEEeeeCCCccEEEecCC---------CcHHHHHHHhC---CCeecCcchHHHH
Q 033679 29 SHAFPSKFPAH--IHYLWKVVEQLGATCSIELDPSVTHVVSNKC---------SNEKVSLGSKG---GQVFGGSTVDRGS 94 (113)
Q Consensus 29 Sg~~p~~~~~~--~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~---------~t~K~~~A~k~---gi~IV~p~WL~~c 94 (113)
||++|.+.... ...|..+|+.+||.+.-+-+-.++.+-.-+. ...||..+++. +..||+++|+.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~ia~~~~~~~~g~~~~~i~~~~~~~~a~~~~l~fl~~~~~~~~~~~~~a~~~i~~~~~~~~~ 91 (372)
T 3pmo_A 12 SGLVPRGSHMSTLSYTLGQLAAHVGAEVRGDADLPIQGLATLQEAGPAQLSFLANPQYRKYLPESRAGAVLLTAADADGF 91 (372)
T ss_dssp GSCCCCCEEEEEEEEEHHHHHHHHTCEEESCTTCEEEEEECGGGCCTTSEEECCCGGGGGGGGGCCCSEEEECHHHHTTC
T ss_pred CCccccccCCCCccccHHHHHHHhCCEEECCCCceEeeecChhhCCCCeEEEECCHHHHHHHhcCCCcEEEEcHHHHhhc
Confidence 67778774322 2468899999999997754444555322211 36788766542 6888998876654
No 60
>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*
Probab=52.20 E-value=18 Score=29.46 Aligned_cols=58 Identities=17% Similarity=0.138 Sum_probs=39.1
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-CcHH-HHHHHh-CCCeecC
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SNEK-VSLGSK-GGQVFGG 87 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t~K-~~~A~k-~gi~IV~ 87 (113)
+.+||+|++|.-|-.+ ..+...|-.-...+||.|.-. ..++ +|+- +-.|+. .||+|.-
T Consensus 51 ~~~pl~g~ri~~~lh~----t~~ta~l~~tl~~~GA~v~~~---------~~n~~stqd~~aaa~~~~g~~v~a 111 (488)
T 3ond_A 51 PSQPFKGAKITGSLHM----TIQTAVLIETLTALGAEVRWC---------SCNIFSTQDHAAAAIARDSAAVFA 111 (488)
T ss_dssp GGCTTTTCEEEEESCC----SHHHHHHHHHHHHTTCEEEEE---------CSSTTCCCHHHHHHHHHHTCEEEE
T ss_pred cCCCCCCCEEEEEecc----HHHHHHHHHHHHHcCCeEEEe---------cCCCCCCcHHHHHHHHhcCCeEEE
Confidence 4889999999876543 456778888899999999621 1222 3433 444444 4888754
No 61
>3o3m_B Beta subunit 2-hydroxyacyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_B* 3o3o_B
Probab=46.67 E-value=34 Score=26.40 Aligned_cols=47 Identities=9% Similarity=-0.008 Sum_probs=36.3
Q ss_pred hHHHHHHhhhhcCCC---CcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC
Q 033679 8 LIFFCTENGQREVLK---GCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD 59 (113)
Q Consensus 8 ~~~~il~~~k~~vL~---Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~ 59 (113)
+++.++.+++.++-. +.+|.++|+ |.. ...+.++.+.+||.++.+..
T Consensus 211 ~~~~l~~el~~~~~~~~~~~RI~~~G~-~~~----~~~l~~~le~~Ga~VV~~~~ 260 (385)
T 3o3m_B 211 LVKDLIAKLNAMPEEVCSGKKVLLTGI-LAD----SKDILDILEDNNISVVADDL 260 (385)
T ss_dssp HHHHHHHHHHHSCCCCCSSEEEEEEES-CCC----CHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHhhhhcCCCCceEEEECC-CCC----cHHHHHHHHHCCCEEEEECc
Confidence 467778888877754 689999996 432 34888899999999988764
No 62
>3o3m_A Alpha subunit 2-hydroxyisocaproyl-COA dehydratase; atypical dehydratase, lyase; 1.82A {Clostridium difficile} PDB: 3o3n_A* 3o3o_A
Probab=32.36 E-value=55 Score=25.38 Aligned_cols=50 Identities=14% Similarity=0.199 Sum_probs=35.4
Q ss_pred hHHHHHHhhhhc------C---CCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCC
Q 033679 8 LIFFCTENGQRE------V---LKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDP 60 (113)
Q Consensus 8 ~~~~il~~~k~~------v---L~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~ 60 (113)
+++.++.+++.+ + -.+.+|.++|. |.. +....+.++.+.+||.++.+...
T Consensus 233 ~~~~l~~el~~r~~~g~~~~~~~~~~Ril~~G~-p~~--~~~~~l~~~le~~G~~vV~~~~~ 291 (408)
T 3o3m_A 233 AFKLLIEELEDNMKTGKSSFRGEEKYRIMMEGI-PCW--PYIGYKMKTLAKFGVNMTGSVYP 291 (408)
T ss_dssp HHHHHHHHHHHHHHHTCCSSCSCCCEEEEEESC-CCG--GGHHHHHHHHHHHTEEEEECSGG
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCceEEEECC-CCc--ccHHHHHHHHHhCCCEEEEEEcc
Confidence 456677777765 2 56899999997 321 23347888889999999876543
No 63
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=31.21 E-value=58 Score=22.41 Aligned_cols=35 Identities=14% Similarity=0.074 Sum_probs=28.4
Q ss_pred hHHHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHH
Q 033679 8 LIFFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVE 48 (113)
Q Consensus 8 ~~~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~ 48 (113)
-|..|+.+++++-.+..+|.|+..+|. ..+.++|+
T Consensus 105 nI~~i~~D~~~~~Y~~y~i~Ft~~i~~------~lle~LA~ 139 (159)
T 1y9j_A 105 NIDRLCQDLRNQLYESYYLNFISAISR------SKLEDIAN 139 (159)
T ss_dssp HHHHHHHHHHHTCBSEEEEEESSCCCH------HHHHHHHH
T ss_pred HHHHHHHHhhhcccCeEEEEEcCCCCH------HHHHHHHh
Confidence 477889999999999999999998763 36666666
No 64
>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*
Probab=29.21 E-value=53 Score=26.65 Aligned_cols=35 Identities=23% Similarity=0.320 Sum_probs=27.9
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEE
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCS 55 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~ 55 (113)
+.++|+|++|..|=- ...+...|-+....+||.+.
T Consensus 69 ~~~pl~G~ri~~~lh----~~~~ta~li~tL~~~GA~V~ 103 (494)
T 3d64_A 69 AQQPLKGARIAGSLH----MTIQTGVLIETLKALGADVR 103 (494)
T ss_dssp TTCTTTTCEEEEESC----CSHHHHHHHHHHHHTTCEEE
T ss_pred ccCCCCCCEEEEEeC----CcHHHHHHHHHHHhCCCEEE
Confidence 378899999998433 34567788999999999996
No 65
>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*
Probab=28.47 E-value=54 Score=26.52 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=28.2
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEE
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCS 55 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~ 55 (113)
+.+||+|++|..|-.+ ..+...|-.-...+||.+.
T Consensus 54 ~~~pl~g~~i~~~~h~----~~~ta~l~~~l~~~ga~v~ 88 (494)
T 3ce6_A 54 EVQPLKGARISGSLHM----TVQTAVLIETLTALGAEVR 88 (494)
T ss_dssp TTCTTTTCEEEEESCC----SHHHHHHHHHHHHTTCEEE
T ss_pred ccCCCCCCEEEEEeec----HHHHHHHHHHHHHCCCeEE
Confidence 4789999999976543 4566788888899999995
No 66
>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3
Probab=28.09 E-value=56 Score=26.41 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=28.1
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEE
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCS 55 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~ 55 (113)
+.+||+|++|.-|-. ...+...|-.-...+||.+.
T Consensus 40 ~~~pl~g~ri~~~lh----~~~~ta~l~~tL~~~Ga~v~ 74 (479)
T 1v8b_A 40 KDQPLKNAKITGCLH----MTVECALLIETLQKLGAQIR 74 (479)
T ss_dssp TTCTTTTCEEEEESC----CSHHHHHHHHHHHHTTCEEE
T ss_pred ccCCCCCCEEEEEec----cHHHHHHHHHHHHHCCCEEE
Confidence 478999999997654 34567788888999999996
No 67
>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}
Probab=27.34 E-value=59 Score=26.38 Aligned_cols=58 Identities=17% Similarity=0.168 Sum_probs=38.8
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeCCCccEEEecCC-Cc-HHHHHHHh-CCCeecC
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELDPSVTHVVSNKC-SN-EKVSLGSK-GGQVFGG 87 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~~~vTHlV~~~~-~t-~K~~~A~k-~gi~IV~ 87 (113)
+.+||+|++|.-+-. ...+...|-.-...+||.|.-.= .++ +| +-+..|+. .||+|..
T Consensus 39 ~~kPl~G~rI~~~lH----~t~~TavlietL~a~GAev~~~~---------cN~~STqd~~aaal~~~gi~v~A 99 (464)
T 3n58_A 39 KSQPLKGARISGSLH----MTIQTAVLIETLKVLGAEVRWAS---------CNIFSTQDHAAAAIAATGTPVFA 99 (464)
T ss_dssp TTCTTTTCEEEEESC----CSHHHHHHHHHHHHTTCEEEEEC---------SSTTCCCHHHHHHHHHTTCCEEE
T ss_pred ccCCCCCCEEEEEEe----cHHHHHHHHHHHHHcCCeEEEec---------CCCCCCcHHHHHHHHhcCCeEEE
Confidence 478999999988644 34667788888999999996221 222 34 33444543 5888753
No 68
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=27.17 E-value=38 Score=27.47 Aligned_cols=46 Identities=11% Similarity=-0.027 Sum_probs=35.6
Q ss_pred HHHHHhhhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEeeeC
Q 033679 10 FFCTENGQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIELD 59 (113)
Q Consensus 10 ~~il~~~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~ 59 (113)
.++.+.+ ++++|++++++++ .+..++...+|++|..+|=-...-+|
T Consensus 115 ~Ev~raL--~~~DgAvlVvda~--~GV~~qT~~v~~~a~~~~lp~i~fIN 160 (548)
T 3vqt_A 115 EDTYRVL--TAVDSALVVIDAA--KGVEAQTRKLMDVCRMRATPVMTFVN 160 (548)
T ss_dssp HHHHHHH--HSCSEEEEEEETT--TBSCHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHH--HhcCceEEEeecC--CCcccccHHHHHHHHHhCCceEEEEe
Confidence 4455555 4799999999997 57888899999999999876554443
No 69
>1cn3_F Fragment of coat protein VP2; viral coat protein VP1, viral coat protein VP2, viral entry, viral protein; 2.20A {Polyomavirus}
Probab=26.17 E-value=16 Score=18.11 Aligned_cols=10 Identities=0% Similarity=-0.599 Sum_probs=7.2
Q ss_pred eecCcchHHH
Q 033679 84 VFGGSTVDRG 93 (113)
Q Consensus 84 ~IV~p~WL~~ 93 (113)
.-|+|||+.-
T Consensus 13 qrvtpdwmlp 22 (29)
T 1cn3_F 13 QRVTPDWMLP 22 (29)
T ss_dssp CCCEEGGGHH
T ss_pred cccCchhhHH
Confidence 4588999753
No 70
>4ed9_A CAIB/BAIF family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; HET: NHE; 1.95A {Brucella suis}
Probab=24.56 E-value=45 Score=26.02 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=28.3
Q ss_pred hhhcCCCCcEEE-EccccCCCCCccchHHHHHHHhcCCEEEeeeC
Q 033679 16 GQREVLKGCKLV-FSHAFPSKFPAHIHYLWKVVEQLGATCSIELD 59 (113)
Q Consensus 16 ~k~~vL~Gc~I~-fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l~ 59 (113)
+...+|+|++++ ||.+++. | ..-++...|||.|..--.
T Consensus 5 m~~~pL~GirVldls~~~aG---P---~a~~~LAdlGAdVIKVE~ 43 (385)
T 4ed9_A 5 MQNTPLDGLKVVELARILAG---P---WVGQTLCDLGADVIKVES 43 (385)
T ss_dssp -CCCTTTTCEEEECCCTTHH---H---HHHHHHHHTTCEEEEEEC
T ss_pred CCCcCCCCCEEEEeCCccHH---H---HHHHHHHHcCCcEEEEcC
Confidence 456799999987 7777753 2 567788999999976543
No 71
>4evu_A Putative periplasmic protein YDGH; structural genomics, PSI-biology, program for the characteri secreted effector proteins, pcsep; HET: MSE; 1.45A {Salmonella enterica subsp}
Probab=24.05 E-value=71 Score=19.30 Aligned_cols=33 Identities=12% Similarity=0.049 Sum_probs=24.1
Q ss_pred EEEEccccCCCCCccchHHHHHHHhcCCEEEeee
Q 033679 25 KLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIEL 58 (113)
Q Consensus 25 ~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~l 58 (113)
+|.+||.+.. ...-++.|.+.|...||....-+
T Consensus 22 tVsvsg~~~s-p~D~~~~lskkAdekGA~~y~Ii 54 (72)
T 4evu_A 22 SVKFTGNYGN-MTEISYQVAKRAAKKGAKYYHIT 54 (72)
T ss_dssp EEEEEECCSS-HHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEECCccCC-hHHHHHHHHHHHHHcCCCEEEEE
Confidence 7889998643 11124789999999999877544
No 72
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=23.35 E-value=88 Score=21.96 Aligned_cols=34 Identities=15% Similarity=0.093 Sum_probs=21.6
Q ss_pred hhhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEE
Q 033679 16 GQREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCS 55 (113)
Q Consensus 16 ~k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~ 55 (113)
|.+++|.|.+|.++. |. + ...+....+.+|+.+.
T Consensus 1 ~e~~~l~g~~vlvtr--~~---~-~~~l~~~L~~~G~~~~ 34 (261)
T 1wcw_A 1 MRRLEEDAVRVAYAG--LR---R-KEAFKALAEKLGFTPL 34 (261)
T ss_dssp -------CCEEEECC--ST---T-HHHHHHHHHHTTCEEE
T ss_pred CCCCCCCCCEEEEeC--CC---c-hHHHHHHHHHCCCcEE
Confidence 346789999999986 33 2 4688889999999875
No 73
>2k2w_A Recombination and DNA repair protein; BRCT domain, cell cycle checkpoint; NMR {Xenopus laevis}
Probab=22.80 E-value=1.4e+02 Score=19.79 Aligned_cols=35 Identities=14% Similarity=0.185 Sum_probs=25.9
Q ss_pred hhcCCCCcEEEEccccCCCCCccchHHHHHHHhcCCEEEee
Q 033679 17 QREVLKGCKLVFSHAFPSKFPAHIHYLWKVVEQLGATCSIE 57 (113)
Q Consensus 17 k~~vL~Gc~I~fSg~~p~~~~~~~~~l~~~a~~lGA~~~~~ 57 (113)
|+++|+|=+++| + +. .+...+...+..-||.+..-
T Consensus 10 ~~~LF~GKtFvF---L--n~-KQ~kkl~~aV~~~GG~~~l~ 44 (118)
T 2k2w_A 10 RKSIFKDKVFLF---L--NA-KQYKKLSPAVLFGGGKTDLL 44 (118)
T ss_dssp CSCSSTTCEEEE---S--CS-STHHHHHHHHHHTTCEEECC
T ss_pred HHhhccCCEEEE---e--CH-HHHHHHHHHHHhcCceEEec
Confidence 578899999999 2 21 24457788888888888754
No 74
>3p94_A GDSL-like lipase; serine hydrolase, catalytic triad, flavodo structural genomics, joint center for structural genomics; HET: MSE PG4; 1.93A {Parabacteroides distasonis}
Probab=21.22 E-value=1.7e+02 Score=18.79 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=17.1
Q ss_pred HHHHHHhhhhcCCCCcEEEEccccCCC
Q 033679 9 IFFCTENGQREVLKGCKLVFSHAFPSK 35 (113)
Q Consensus 9 ~~~il~~~k~~vL~Gc~I~fSg~~p~~ 35 (113)
+..++..+|+ .|+.|++.+..|..
T Consensus 103 ~~~~i~~~~~---~~~~vil~~~~p~~ 126 (204)
T 3p94_A 103 LVSMAELAKA---NHIKVIFCSVLPAY 126 (204)
T ss_dssp HHHHHHHHHH---TTCEEEEECCCCCS
T ss_pred HHHHHHHHHh---CCCeEEEEeCCCCC
Confidence 4566777776 48888888877653
Done!